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a |
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b/pipeline.config |
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params { |
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kFold = 2 |
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label = "PH_EOSI_B_300" |
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metPropagate_dir = "$baseDir/metPropagate_dir" |
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metPropagate_STRING_dir = "$baseDir/metPropagate_dir/integration/graph_files/" |
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clinical = "$baseDir/data/Merged_clinical_subgroups_concat.tsv" |
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proteome = "$baseDir/data/proteome" |
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metabolome = "$baseDir/data/metabolome" |
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metabolome_identifier = "$baseDir/data/metabolome_identifier" |
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transcriptome = "$baseDir/data/transcriptome" |
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network = "$baseDir/data/PPI_human.tsv" |
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methylome = "$baseDir/data/methylome" |
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GO_graph = "$baseDir/GO_basic/GO_tree.tsv" |
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GO_gene2GO = "$baseDir/GO_basic/goa_human.gaf.filt" |
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publish_dir = "outDir" |
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k_DAM = 100 |
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pval = 0.05 |
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corrCut = 0.3 |
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K = 150 |
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} |
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docker { |
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enabled = true |
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runOptions = '-u \$(id -u):\$(id -g)' |
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} |