Diff of /pipeline.config [000000] .. [03aca1]

Switch to unified view

a b/pipeline.config
1
params {
2
        kFold = 2
3
        label = "PH_EOSI_B_300"
4
        metPropagate_dir = "$baseDir/metPropagate_dir"
5
        metPropagate_STRING_dir = "$baseDir/metPropagate_dir/integration/graph_files/"
6
        clinical = "$baseDir/data/Merged_clinical_subgroups_concat.tsv"
7
        proteome = "$baseDir/data/proteome"
8
        metabolome = "$baseDir/data/metabolome"
9
        metabolome_identifier = "$baseDir/data/metabolome_identifier"
10
        transcriptome = "$baseDir/data/transcriptome"
11
        network = "$baseDir/data/PPI_human.tsv"
12
        methylome = "$baseDir/data/methylome"
13
        GO_graph = "$baseDir/GO_basic/GO_tree.tsv"
14
        GO_gene2GO = "$baseDir/GO_basic/goa_human.gaf.filt"
15
16
17
        publish_dir = "outDir"
18
19
        k_DAM = 100
20
        pval = 0.05
21
        corrCut = 0.3
22
        K = 150
23
}
24
docker {
25
    enabled = true
26
    runOptions = '-u \$(id -u):\$(id -g)'
27
}