--- a
+++ b/pipeline.config
@@ -0,0 +1,27 @@
+params {
+        kFold = 2
+        label = "PH_EOSI_B_300"
+        metPropagate_dir = "$baseDir/metPropagate_dir"
+        metPropagate_STRING_dir = "$baseDir/metPropagate_dir/integration/graph_files/"
+        clinical = "$baseDir/data/Merged_clinical_subgroups_concat.tsv"
+        proteome = "$baseDir/data/proteome"
+        metabolome = "$baseDir/data/metabolome"
+        metabolome_identifier = "$baseDir/data/metabolome_identifier"
+        transcriptome = "$baseDir/data/transcriptome"
+        network = "$baseDir/data/PPI_human.tsv"
+        methylome = "$baseDir/data/methylome"
+        GO_graph = "$baseDir/GO_basic/GO_tree.tsv"
+        GO_gene2GO = "$baseDir/GO_basic/goa_human.gaf.filt"
+
+
+        publish_dir = "outDir"
+
+        k_DAM = 100
+        pval = 0.05
+        corrCut = 0.3
+        K = 150
+}
+docker {
+    enabled = true
+    runOptions = '-u \$(id -u):\$(id -g)'
+}