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/environment.yml
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| a | b/environment.yml | ||
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| 1 | name: base |
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| 2 | channels: |
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| 3 | - pyg |
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| 4 | - pytorch |
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| 5 | - anaconda |
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| 6 | - conda-forge |
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| 7 | - bioconda |
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| 8 | - defaults |
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| 9 | dependencies: |
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| 10 | - _libgcc_mutex=0.1 |
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| 11 | - _openmp_mutex=4.5 |
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| 12 | - _tflow_select=2.3.0 |
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| 13 | - aioeasywebdav=2.4.0 |
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| 14 | - aiohttp=3.8.1 |
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| 15 | - aiosignal=1.2.0 |
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| 16 | - alsa-lib=1.2.3.2 |
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| 17 | - amply=0.1.5 |
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| 18 | - anyio=3.3.0 |
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| 19 | - appdirs=1.4.4 |
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| 20 | - argon2-cffi=20.1.0 |
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| 21 | - astor=0.8.1 |
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| 22 | - astunparse=1.6.3 |
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| 23 | - async-timeout=4.0.2 |
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| 24 | - async_generator=1.10 |
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| 25 | - atk-1.0=2.36.0 |
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| 26 | - attmap=0.13.2 |
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| 27 | - attrs=21.2.0 |
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| 28 | - babel=2.9.1 |
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| 29 | - backcall=0.2.0 |
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| 30 | - backports=1.0 |
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| 31 | - backports.functools_lru_cache |
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| 32 | - bcrypt=3.2.2 |
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| 33 | - binutils_impl_linux-64 |
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| 34 | - binutils_linux-64=2.36 |
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| 35 | - wheel=0.37.0 |
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| 36 | - conda |
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| 37 | - pip=21.0.1 |
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| 38 | - cudatoolkit=10.1 |
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| 39 | - cudnn=7.6 |
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| 40 | - curl |
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| 41 | - networkx=2.5 |
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| 42 | - nextflow=21.04.0 |
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| 43 | - ninja |
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| 44 | - python=3.7.4 |
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| 45 | - tensorflow=2.3 |
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| 46 | - pip: |
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| 47 | - scipy>=1.2.3 |
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| 48 | - statsmodels==0.9.0 |
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| 49 | - argparse==1.4.0 |
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| 50 | - d3graph==0.1.12 |
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| 51 | - gseapy==0.10.5 |
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| 52 | - jinja2==2.11.3 |
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| 53 | - keras==2.9.0 |
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| 54 | - numpy<1.19.0 |
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| 55 | - pandas |
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| 56 | - pysam==0.19.1 |
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| 57 | - scikit-bio |
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| 58 | - sklearn |
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| 59 | - termcolor==1.1.0 |
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| 60 | - threadpoolctl==3.0.0 |