--- a +++ b/environment.yml @@ -0,0 +1,60 @@ +name: base +channels: + - pyg + - pytorch + - anaconda + - conda-forge + - bioconda + - defaults +dependencies: + - _libgcc_mutex=0.1 + - _openmp_mutex=4.5 + - _tflow_select=2.3.0 + - aioeasywebdav=2.4.0 + - aiohttp=3.8.1 + - aiosignal=1.2.0 + - alsa-lib=1.2.3.2 + - amply=0.1.5 + - anyio=3.3.0 + - appdirs=1.4.4 + - argon2-cffi=20.1.0 + - astor=0.8.1 + - astunparse=1.6.3 + - async-timeout=4.0.2 + - async_generator=1.10 + - atk-1.0=2.36.0 + - attmap=0.13.2 + - attrs=21.2.0 + - babel=2.9.1 + - backcall=0.2.0 + - backports=1.0 + - backports.functools_lru_cache + - bcrypt=3.2.2 + - binutils_impl_linux-64 + - binutils_linux-64=2.36 + - wheel=0.37.0 + - conda + - pip=21.0.1 + - cudatoolkit=10.1 + - cudnn=7.6 + - curl + - networkx=2.5 + - nextflow=21.04.0 + - ninja + - python=3.7.4 + - tensorflow=2.3 + - pip: + - scipy>=1.2.3 + - statsmodels==0.9.0 + - argparse==1.4.0 + - d3graph==0.1.12 + - gseapy==0.10.5 + - jinja2==2.11.3 + - keras==2.9.0 + - numpy<1.19.0 + - pandas + - pysam==0.19.1 + - scikit-bio + - sklearn + - termcolor==1.1.0 + - threadpoolctl==3.0.0