--- a +++ b/solutions/hw3/README.md @@ -0,0 +1,24 @@ +Download and unpack data + +``` +wget https://bimsbstatic.mdc-berlin.de/akalin/buyar/flexynesis-benchmark-datasets/ccle_vs_gdsc.tgz +tar -xzvf ccle_vs_gdsc.tgz +``` + +Define bash script to run multiple experiments: +=> see run_experiments.sh + +``` +mkdir output +srun --gpus=1 bash run_experiments.sh > log + +``` + +Final report: See analyse_experiments.ipynb + +If you'd like to see a more elaborate pipeline that addresses such a benchmarking exercise, check out our benchmarking pipeline for Flexynesis: +https://github.com/BIMSBbioinfo/flexynesis-benchmarks + + + +