Datasets
Models
Downloads: 1
Diff of
/other_tutorials/cbioportal.ipynb
[000000]
..
[38ee8c]
Switch to side-by-side view
--- a +++ b/other_tutorials/cbioportal.ipynb @@ -0,0 +1,4309 @@ +{ + "cells": [ + { + "cell_type": "code", + "execution_count": 1, + "id": "a9b12fb4-8de2-4590-964d-9315e3a3cc97", + "metadata": {}, + "outputs": [ + { + "name": "stderr", + "output_type": "stream", + "text": [ + "Seed set to 42\n" + ] + } + ], + "source": [ + "import os\n", + "import flexynesis\n", + "import torch\n", + "import numpy as np\n", + "import pandas as pd" + ] + }, + { + "cell_type": "markdown", + "id": "59440372-485a-4229-8846-531cc9912904", + "metadata": {}, + "source": [ + "https://www.cbioportal.org/study/summary?id=msk_impact_2017" + ] + }, + { + "cell_type": "code", + "execution_count": 2, + "id": "32f3cbf5-3af6-47a5-9fdd-6f6d89c51e39", + "metadata": {}, + "outputs": [ + { + "name": "stdout", + "output_type": "stream", + "text": [ + "Downloading https://cbioportal-datahub.s3.amazonaws.com/msk_impact_2017.tar.gz...\n", + "Extracting msk_impact_2017.tar.gz...\n", + " Available Data Files\n", + " data_clinical_sample.txt\n", + " data_mutations.txt\n", + " data_cna.txt\n", + "data_gene_panel_matrix.txt\n", + " data_clinical_patient.txt\n", + " data_sv.txt\n", + "\n", + "\n", + "Please select a list of files to import. Example:\n", + " get_cbioportal_data('study_id', files={'mut': 'data_mutations.txt', 'clin': 'data_clinical_patient.txt'})\n" + ] + } + ], + "source": [ + "cbio = flexynesis.CBioPortalData('msk_impact_2017')\n", + "cbio.get_cbioportal_data(cbio.study_id)" + ] + }, + { + "cell_type": "code", + "execution_count": 3, + "id": "13d7e87c-c558-427a-a374-1ee0467e82c6", + "metadata": {}, + "outputs": [], + "source": [ + "cna = pd.read_csv('./msk_impact_2017/data_cna.txt', delimiter='\\t')" + ] + }, + { + "cell_type": "code", + "execution_count": 4, + "id": "9b849acd-2b7d-4316-a065-9e3f68eec7a3", + "metadata": {}, + "outputs": [ + { + "data": { + "text/html": [ + "<div>\n", + "<style scoped>\n", + " .dataframe tbody tr th:only-of-type {\n", + " vertical-align: middle;\n", + " }\n", + "\n", + " .dataframe tbody tr th {\n", + " vertical-align: top;\n", + " }\n", + "\n", + " .dataframe thead th {\n", + " text-align: right;\n", + " }\n", + "</style>\n", + "<table border=\"1\" class=\"dataframe\">\n", + " <thead>\n", + " <tr style=\"text-align: right;\">\n", + " <th></th>\n", + " <th>Hugo_Symbol</th>\n", + " <th>P-0000004-T01-IM3</th>\n", + " <th>P-0000015-T01-IM3</th>\n", + " <th>P-0000023-T01-IM3</th>\n", + " <th>P-0000024-T01-IM3</th>\n", + " <th>P-0000025-T02-IM5</th>\n", + " <th>P-0000025-T01-IM3</th>\n", + " <th>P-0000026-T01-IM3</th>\n", + " <th>P-0000027-T01-IM3</th>\n", + " <th>P-0000030-T01-IM3</th>\n", + " <th>...</th>\n", + " <th>P-0012404-T01-IM5</th>\n", + " <th>P-0012405-T01-IM5</th>\n", + " <th>P-0012406-T01-IM5</th>\n", + " <th>P-0012423-T01-IM5</th>\n", + " <th>P-0012434-T01-IM5</th>\n", + " <th>P-0012442-T01-IM5</th>\n", + " <th>P-0012500-T01-IM5</th>\n", + " <th>P-0012524-T01-IM5</th>\n", + " <th>P-0012557-T01-IM5</th>\n", + " <th>P-0012622-T01-IM5</th>\n", + " </tr>\n", + " </thead>\n", + " <tbody>\n", + " <tr>\n", + " <th>0</th>\n", + " <td>ABL1</td>\n", + " <td>0</td>\n", + " <td>0</td>\n", + " <td>0</td>\n", + " <td>0</td>\n", + " <td>0</td>\n", + " <td>0</td>\n", + " <td>0</td>\n", + " <td>0</td>\n", + " <td>0</td>\n", + " <td>...</td>\n", + " <td>0</td>\n", + " <td>0</td>\n", + " <td>0</td>\n", + " <td>0</td>\n", + " <td>0</td>\n", + " <td>0</td>\n", + " <td>0</td>\n", + " <td>0</td>\n", + " <td>0</td>\n", + " <td>0</td>\n", + " </tr>\n", + " <tr>\n", + " <th>1</th>\n", + " <td>ACVR1</td>\n", + " <td>0</td>\n", + " <td>0</td>\n", + " <td>0</td>\n", + " <td>0</td>\n", + " <td>0</td>\n", + " <td>0</td>\n", + " <td>0</td>\n", + " <td>0</td>\n", + " <td>0</td>\n", + " <td>...</td>\n", + " <td>0</td>\n", + " <td>0</td>\n", + " <td>0</td>\n", + " <td>0</td>\n", + " <td>0</td>\n", + " <td>0</td>\n", + " <td>0</td>\n", + " <td>0</td>\n", + " <td>0</td>\n", + " <td>0</td>\n", + " </tr>\n", + " <tr>\n", + " <th>2</th>\n", + " <td>AKT1</td>\n", + " <td>0</td>\n", + " <td>0</td>\n", + " <td>0</td>\n", + " <td>0</td>\n", + " <td>0</td>\n", + " <td>0</td>\n", + " <td>0</td>\n", + " <td>0</td>\n", + " <td>0</td>\n", + " <td>...</td>\n", + " <td>0</td>\n", + " <td>0</td>\n", + " <td>0</td>\n", + " <td>0</td>\n", + " <td>0</td>\n", + " <td>0</td>\n", + " <td>0</td>\n", + " <td>0</td>\n", + " <td>0</td>\n", + " <td>0</td>\n", + " </tr>\n", + " <tr>\n", + " <th>3</th>\n", + " <td>AKT2</td>\n", + " <td>0</td>\n", + " <td>0</td>\n", + " <td>0</td>\n", + " <td>0</td>\n", + " <td>0</td>\n", + " <td>0</td>\n", + " <td>0</td>\n", + " <td>0</td>\n", + " <td>0</td>\n", + " <td>...</td>\n", + " <td>0</td>\n", + " <td>0</td>\n", + " <td>0</td>\n", + " <td>0</td>\n", + " <td>0</td>\n", + " <td>0</td>\n", + " <td>0</td>\n", + " <td>0</td>\n", + " <td>0</td>\n", + " <td>0</td>\n", + " </tr>\n", + " <tr>\n", + " <th>4</th>\n", + " <td>AKT3</td>\n", + " <td>0</td>\n", + " <td>0</td>\n", + " <td>0</td>\n", + " <td>2</td>\n", + " <td>0</td>\n", + " <td>0</td>\n", + " <td>0</td>\n", + " <td>0</td>\n", + " <td>0</td>\n", + " <td>...</td>\n", + " <td>0</td>\n", + " <td>0</td>\n", + " <td>0</td>\n", + " <td>0</td>\n", + " <td>0</td>\n", + " <td>0</td>\n", + " <td>0</td>\n", + " <td>0</td>\n", + " <td>0</td>\n", + " <td>0</td>\n", + " </tr>\n", + " </tbody>\n", + "</table>\n", + "<p>5 rows × 10946 columns</p>\n", + "</div>" + ], + "text/plain": [ + " Hugo_Symbol P-0000004-T01-IM3 P-0000015-T01-IM3 P-0000023-T01-IM3 \\\n", + "0 ABL1 0 0 0 \n", + "1 ACVR1 0 0 0 \n", + "2 AKT1 0 0 0 \n", + "3 AKT2 0 0 0 \n", + "4 AKT3 0 0 0 \n", + "\n", + " P-0000024-T01-IM3 P-0000025-T02-IM5 P-0000025-T01-IM3 P-0000026-T01-IM3 \\\n", + "0 0 0 0 0 \n", + "1 0 0 0 0 \n", + "2 0 0 0 0 \n", + "3 0 0 0 0 \n", + "4 2 0 0 0 \n", + "\n", + " P-0000027-T01-IM3 P-0000030-T01-IM3 ... P-0012404-T01-IM5 \\\n", + "0 0 0 ... 0 \n", + "1 0 0 ... 0 \n", + "2 0 0 ... 0 \n", + "3 0 0 ... 0 \n", + "4 0 0 ... 0 \n", + "\n", + " P-0012405-T01-IM5 P-0012406-T01-IM5 P-0012423-T01-IM5 P-0012434-T01-IM5 \\\n", + "0 0 0 0 0 \n", + "1 0 0 0 0 \n", + "2 0 0 0 0 \n", + "3 0 0 0 0 \n", + "4 0 0 0 0 \n", + "\n", + " P-0012442-T01-IM5 P-0012500-T01-IM5 P-0012524-T01-IM5 P-0012557-T01-IM5 \\\n", + "0 0 0 0 0 \n", + "1 0 0 0 0 \n", + "2 0 0 0 0 \n", + "3 0 0 0 0 \n", + "4 0 0 0 0 \n", + "\n", + " P-0012622-T01-IM5 \n", + "0 0 \n", + "1 0 \n", + "2 0 \n", + "3 0 \n", + "4 0 \n", + "\n", + "[5 rows x 10946 columns]" + ] + }, + "execution_count": 4, + "metadata": {}, + "output_type": "execute_result" + } + ], + "source": [ + "cna.head()" + ] + }, + { + "cell_type": "code", + "execution_count": 5, + "id": "552617dd-d21c-4084-b57f-7e13e900326f", + "metadata": {}, + "outputs": [], + "source": [ + "mut = pd.read_csv('./msk_impact_2017/data_mutations.txt', delimiter='\\t', skiprows=1)" + ] + }, + { + "cell_type": "code", + "execution_count": 8, + "id": "a9723f14-7ebe-45d2-bc7f-b9e355dcac63", + "metadata": {}, + "outputs": [ + { + "data": { + "text/html": [ + "<div>\n", + "<style scoped>\n", + " .dataframe tbody tr th:only-of-type {\n", + " vertical-align: middle;\n", + " }\n", + "\n", + " .dataframe tbody tr th {\n", + " vertical-align: top;\n", + " }\n", + "\n", + " .dataframe thead th {\n", + " text-align: right;\n", + " }\n", + "</style>\n", + "<table border=\"1\" class=\"dataframe\">\n", + " <thead>\n", + " <tr style=\"text-align: right;\">\n", + " <th></th>\n", + " <th>Hugo_Symbol</th>\n", + " <th>Entrez_Gene_Id</th>\n", + " <th>Center</th>\n", + " <th>NCBI_Build</th>\n", + " <th>Chromosome</th>\n", + " <th>Start_Position</th>\n", + " <th>End_Position</th>\n", + " <th>Strand</th>\n", + " <th>Consequence</th>\n", + " <th>Variant_Classification</th>\n", + " <th>...</th>\n", + " <th>n_alt_count</th>\n", + " <th>HGVSc</th>\n", + " <th>HGVSp</th>\n", + " <th>HGVSp_Short</th>\n", + " <th>Transcript_ID</th>\n", + " <th>RefSeq</th>\n", + " <th>Protein_position</th>\n", + " <th>Codons</th>\n", + " <th>Hotspot</th>\n", + " <th>cDNA_change</th>\n", + " </tr>\n", + " </thead>\n", + " <tbody>\n", + " <tr>\n", + " <th>0</th>\n", + " <td>SPEN</td>\n", + " <td>NaN</td>\n", + " <td>NaN</td>\n", + " <td>GRCh37</td>\n", + " <td>1</td>\n", + " <td>16265908</td>\n", + " <td>16265908</td>\n", + " <td>+</td>\n", + " <td>missense_variant</td>\n", + " <td>Missense_Mutation</td>\n", + " <td>...</td>\n", + " <td>NaN</td>\n", + " <td>ENST00000375759.3:c.10981A>T</td>\n", + " <td>p.Ile3661Phe</td>\n", + " <td>p.I3661F</td>\n", + " <td>ENST00000375759</td>\n", + " <td>NM_015001.2</td>\n", + " <td>3661.0</td>\n", + " <td>Att/Ttt</td>\n", + " <td>0</td>\n", + " <td>c.10981A>T</td>\n", + " </tr>\n", + " <tr>\n", + " <th>1</th>\n", + " <td>ALK</td>\n", + " <td>NaN</td>\n", + " <td>NaN</td>\n", + " <td>GRCh37</td>\n", + " <td>2</td>\n", + " <td>29543736</td>\n", + " <td>29543736</td>\n", + " <td>+</td>\n", + " <td>missense_variant</td>\n", + " <td>Missense_Mutation</td>\n", + " <td>...</td>\n", + " <td>NaN</td>\n", + " <td>ENST00000389048.3:c.1427T>C</td>\n", + " <td>p.Val476Ala</td>\n", + " <td>p.V476A</td>\n", + " <td>ENST00000389048</td>\n", + " <td>NM_004304.4</td>\n", + " <td>476.0</td>\n", + " <td>gTg/gCg</td>\n", + " <td>0</td>\n", + " <td>c.1427T>C</td>\n", + " </tr>\n", + " <tr>\n", + " <th>2</th>\n", + " <td>PDCD1</td>\n", + " <td>NaN</td>\n", + " <td>NaN</td>\n", + " <td>GRCh37</td>\n", + " <td>2</td>\n", + " <td>242793433</td>\n", + " <td>242793433</td>\n", + " <td>+</td>\n", + " <td>missense_variant</td>\n", + " <td>Missense_Mutation</td>\n", + " <td>...</td>\n", + " <td>NaN</td>\n", + " <td>ENST00000334409.5:c.644C>T</td>\n", + " <td>p.Ala215Val</td>\n", + " <td>p.A215V</td>\n", + " <td>ENST00000334409</td>\n", + " <td>NM_005018.2</td>\n", + " <td>215.0</td>\n", + " <td>gCc/gTc</td>\n", + " <td>0</td>\n", + " <td>c.644C>T</td>\n", + " </tr>\n", + " <tr>\n", + " <th>3</th>\n", + " <td>MAP3K1</td>\n", + " <td>NaN</td>\n", + " <td>NaN</td>\n", + " <td>GRCh37</td>\n", + " <td>5</td>\n", + " <td>56177843</td>\n", + " <td>56177843</td>\n", + " <td>+</td>\n", + " <td>missense_variant</td>\n", + " <td>Missense_Mutation</td>\n", + " <td>...</td>\n", + " <td>NaN</td>\n", + " <td>ENST00000399503.3:c.2816C>G</td>\n", + " <td>p.Ser939Cys</td>\n", + " <td>p.S939C</td>\n", + " <td>ENST00000399503</td>\n", + " <td>NM_005921.1</td>\n", + " <td>939.0</td>\n", + " <td>tCt/tGt</td>\n", + " <td>0</td>\n", + " <td>c.2816C>G</td>\n", + " </tr>\n", + " <tr>\n", + " <th>4</th>\n", + " <td>FLT4</td>\n", + " <td>NaN</td>\n", + " <td>NaN</td>\n", + " <td>GRCh37</td>\n", + " <td>5</td>\n", + " <td>180030313</td>\n", + " <td>180030313</td>\n", + " <td>+</td>\n", + " <td>missense_variant</td>\n", + " <td>Missense_Mutation</td>\n", + " <td>...</td>\n", + " <td>NaN</td>\n", + " <td>ENST00000261937.6:c.3971G>T</td>\n", + " <td>p.Arg1324Leu</td>\n", + " <td>p.R1324L</td>\n", + " <td>ENST00000261937</td>\n", + " <td>NM_182925.4</td>\n", + " <td>1324.0</td>\n", + " <td>cGg/cTg</td>\n", + " <td>0</td>\n", + " <td>c.3971G>T</td>\n", + " </tr>\n", + " </tbody>\n", + "</table>\n", + "<p>5 rows × 46 columns</p>\n", + "</div>" + ], + "text/plain": [ + " Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_Position \\\n", + "0 SPEN NaN NaN GRCh37 1 16265908 \n", + "1 ALK NaN NaN GRCh37 2 29543736 \n", + "2 PDCD1 NaN NaN GRCh37 2 242793433 \n", + "3 MAP3K1 NaN NaN GRCh37 5 56177843 \n", + "4 FLT4 NaN NaN GRCh37 5 180030313 \n", + "\n", + " End_Position Strand Consequence Variant_Classification ... \\\n", + "0 16265908 + missense_variant Missense_Mutation ... \n", + "1 29543736 + missense_variant Missense_Mutation ... \n", + "2 242793433 + missense_variant Missense_Mutation ... \n", + "3 56177843 + missense_variant Missense_Mutation ... \n", + "4 180030313 + missense_variant Missense_Mutation ... \n", + "\n", + " n_alt_count HGVSc HGVSp HGVSp_Short \\\n", + "0 NaN ENST00000375759.3:c.10981A>T p.Ile3661Phe p.I3661F \n", + "1 NaN ENST00000389048.3:c.1427T>C p.Val476Ala p.V476A \n", + "2 NaN ENST00000334409.5:c.644C>T p.Ala215Val p.A215V \n", + "3 NaN ENST00000399503.3:c.2816C>G p.Ser939Cys p.S939C \n", + "4 NaN ENST00000261937.6:c.3971G>T p.Arg1324Leu p.R1324L \n", + "\n", + " Transcript_ID RefSeq Protein_position Codons Hotspot \\\n", + "0 ENST00000375759 NM_015001.2 3661.0 Att/Ttt 0 \n", + "1 ENST00000389048 NM_004304.4 476.0 gTg/gCg 0 \n", + "2 ENST00000334409 NM_005018.2 215.0 gCc/gTc 0 \n", + "3 ENST00000399503 NM_005921.1 939.0 tCt/tGt 0 \n", + "4 ENST00000261937 NM_182925.4 1324.0 cGg/cTg 0 \n", + "\n", + " cDNA_change \n", + "0 c.10981A>T \n", + "1 c.1427T>C \n", + "2 c.644C>T \n", + "3 c.2816C>G \n", + "4 c.3971G>T \n", + "\n", + "[5 rows x 46 columns]" + ] + }, + "execution_count": 8, + "metadata": {}, + "output_type": "execute_result" + } + ], + "source": [ + "mut.head()" + ] + }, + { + "cell_type": "code", + "execution_count": 13, + "id": "8935fc81-691d-4370-be9e-1242d8f99510", + "metadata": {}, + "outputs": [], + "source": [ + "clin = pd.read_csv('./msk_impact_2017/data_clinical_sample.txt', delimiter='\\t', skiprows=4)" + ] + }, + { + "cell_type": "code", + "execution_count": 14, + "id": "967a9785-b1c8-42a5-b365-dcf625e9d596", + "metadata": {}, + "outputs": [ + { + "data": { + "text/html": [ + "<div>\n", + "<style scoped>\n", + " .dataframe tbody tr th:only-of-type {\n", + " vertical-align: middle;\n", + " }\n", + "\n", + " .dataframe tbody tr th {\n", + " vertical-align: top;\n", + " }\n", + "\n", + " .dataframe thead th {\n", + " text-align: right;\n", + " }\n", + "</style>\n", + "<table border=\"1\" class=\"dataframe\">\n", + " <thead>\n", + " <tr style=\"text-align: right;\">\n", + " <th></th>\n", + " <th>PATIENT_ID</th>\n", + " <th>SAMPLE_ID</th>\n", + " <th>SAMPLE_COLLECTION_SOURCE</th>\n", + " <th>SPECIMEN_PRESERVATION_TYPE</th>\n", + " <th>SPECIMEN_TYPE</th>\n", + " <th>DNA_INPUT</th>\n", + " <th>SAMPLE_COVERAGE</th>\n", + " <th>TUMOR_PURITY</th>\n", + " <th>MATCHED_STATUS</th>\n", + " <th>SAMPLE_TYPE</th>\n", + " <th>PRIMARY_SITE</th>\n", + " <th>METASTATIC_SITE</th>\n", + " <th>SAMPLE_CLASS</th>\n", + " <th>ONCOTREE_CODE</th>\n", + " <th>CANCER_TYPE</th>\n", + " <th>CANCER_TYPE_DETAILED</th>\n", + " <th>SOMATIC_STATUS</th>\n", + " <th>TMB_NONSYNONYMOUS</th>\n", + " </tr>\n", + " </thead>\n", + " <tbody>\n", + " <tr>\n", + " <th>0</th>\n", + " <td>P-0000004</td>\n", + " <td>P-0000004-T01-IM3</td>\n", + " <td>Outside</td>\n", + " <td>FFPE</td>\n", + " <td>Biopsy</td>\n", + " <td>250.0</td>\n", + " <td>428</td>\n", + " <td>50.0</td>\n", + " <td>Matched</td>\n", + " <td>Primary</td>\n", + " <td>Breast</td>\n", + " <td>Not Applicable</td>\n", + " <td>Tumor</td>\n", + " <td>IDC</td>\n", + " <td>Breast Cancer</td>\n", + " <td>Breast Invasive Ductal Carcinoma</td>\n", + " <td>Matched</td>\n", + " <td>17.746485</td>\n", + " </tr>\n", + " <tr>\n", + " <th>1</th>\n", + " <td>P-0000015</td>\n", + " <td>P-0000015-T01-IM3</td>\n", + " <td>In-House</td>\n", + " <td>FFPE</td>\n", + " <td>Biopsy</td>\n", + " <td>198.0</td>\n", + " <td>281</td>\n", + " <td>40.0</td>\n", + " <td>Matched</td>\n", + " <td>Metastasis</td>\n", + " <td>Breast</td>\n", + " <td>Liver</td>\n", + " <td>Tumor</td>\n", + " <td>IDC</td>\n", + " <td>Breast Cancer</td>\n", + " <td>Breast Invasive Ductal Carcinoma</td>\n", + " <td>Matched</td>\n", + " <td>7.764087</td>\n", + " </tr>\n", + " <tr>\n", + " <th>2</th>\n", + " <td>P-0000023</td>\n", + " <td>P-0000023-T01-IM3</td>\n", + " <td>In-House</td>\n", + " <td>FFPE</td>\n", + " <td>Biopsy</td>\n", + " <td>250.0</td>\n", + " <td>454</td>\n", + " <td>30.0</td>\n", + " <td>Matched</td>\n", + " <td>Primary</td>\n", + " <td>Peritoneum</td>\n", + " <td>Not Applicable</td>\n", + " <td>Tumor</td>\n", + " <td>PEMESO</td>\n", + " <td>Mesothelioma</td>\n", + " <td>Peritoneal Mesothelioma</td>\n", + " <td>Matched</td>\n", + " <td>5.545777</td>\n", + " </tr>\n", + " <tr>\n", + " <th>3</th>\n", + " <td>P-0000024</td>\n", + " <td>P-0000024-T01-IM3</td>\n", + " <td>In-House</td>\n", + " <td>FFPE</td>\n", + " <td>Resection</td>\n", + " <td>250.0</td>\n", + " <td>1016</td>\n", + " <td>40.0</td>\n", + " <td>Matched</td>\n", + " <td>Metastasis</td>\n", + " <td>Uterus</td>\n", + " <td>Lung</td>\n", + " <td>Tumor</td>\n", + " <td>UEC</td>\n", + " <td>Endometrial Cancer</td>\n", + " <td>Uterine Endometrioid Carcinoma</td>\n", + " <td>Matched</td>\n", + " <td>6.654932</td>\n", + " </tr>\n", + " <tr>\n", + " <th>4</th>\n", + " <td>P-0000025</td>\n", + " <td>P-0000025-T02-IM5</td>\n", + " <td>In-House</td>\n", + " <td>FFPE</td>\n", + " <td>Biopsy</td>\n", + " <td>250.0</td>\n", + " <td>1147</td>\n", + " <td>30.0</td>\n", + " <td>Matched</td>\n", + " <td>Metastasis</td>\n", + " <td>Uterus</td>\n", + " <td>Peritoneum</td>\n", + " <td>Tumor</td>\n", + " <td>USC</td>\n", + " <td>Endometrial Cancer</td>\n", + " <td>Uterine Serous Carcinoma/Uterine Papillary Ser...</td>\n", + " <td>Matched</td>\n", + " <td>1.957439</td>\n", + " </tr>\n", + " </tbody>\n", + "</table>\n", + "</div>" + ], + "text/plain": [ + " PATIENT_ID SAMPLE_ID SAMPLE_COLLECTION_SOURCE \\\n", + "0 P-0000004 P-0000004-T01-IM3 Outside \n", + "1 P-0000015 P-0000015-T01-IM3 In-House \n", + "2 P-0000023 P-0000023-T01-IM3 In-House \n", + "3 P-0000024 P-0000024-T01-IM3 In-House \n", + "4 P-0000025 P-0000025-T02-IM5 In-House \n", + "\n", + " SPECIMEN_PRESERVATION_TYPE SPECIMEN_TYPE DNA_INPUT SAMPLE_COVERAGE \\\n", + "0 FFPE Biopsy 250.0 428 \n", + "1 FFPE Biopsy 198.0 281 \n", + "2 FFPE Biopsy 250.0 454 \n", + "3 FFPE Resection 250.0 1016 \n", + "4 FFPE Biopsy 250.0 1147 \n", + "\n", + " TUMOR_PURITY MATCHED_STATUS SAMPLE_TYPE PRIMARY_SITE METASTATIC_SITE \\\n", + "0 50.0 Matched Primary Breast Not Applicable \n", + "1 40.0 Matched Metastasis Breast Liver \n", + "2 30.0 Matched Primary Peritoneum Not Applicable \n", + "3 40.0 Matched Metastasis Uterus Lung \n", + "4 30.0 Matched Metastasis Uterus Peritoneum \n", + "\n", + " SAMPLE_CLASS ONCOTREE_CODE CANCER_TYPE \\\n", + "0 Tumor IDC Breast Cancer \n", + "1 Tumor IDC Breast Cancer \n", + "2 Tumor PEMESO Mesothelioma \n", + "3 Tumor UEC Endometrial Cancer \n", + "4 Tumor USC Endometrial Cancer \n", + "\n", + " CANCER_TYPE_DETAILED SOMATIC_STATUS \\\n", + "0 Breast Invasive Ductal Carcinoma Matched \n", + "1 Breast Invasive Ductal Carcinoma Matched \n", + "2 Peritoneal Mesothelioma Matched \n", + "3 Uterine Endometrioid Carcinoma Matched \n", + "4 Uterine Serous Carcinoma/Uterine Papillary Ser... Matched \n", + "\n", + " TMB_NONSYNONYMOUS \n", + "0 17.746485 \n", + "1 7.764087 \n", + "2 5.545777 \n", + "3 6.654932 \n", + "4 1.957439 " + ] + }, + "execution_count": 14, + "metadata": {}, + "output_type": "execute_result" + } + ], + "source": [ + "clin.head()" + ] + }, + { + "cell_type": "code", + "execution_count": 15, + "id": "7ebdbd09-b49c-4199-8172-bd3d486fc7ef", + "metadata": {}, + "outputs": [ + { + "name": "stdout", + "output_type": "stream", + "text": [ + "Importing data_mutations.txt...\n", + "Binarizing and converting data_mutations.txt to matrix...\n", + "Importing data_cna.txt...\n", + "Converting data_cna.txt to matrix...\n", + "Importing data_clinical_sample.txt...\n", + "{'mut': (414, 10129), 'cna': (410, 10945), 'clin': (10336, 17)}\n" + ] + } + ], + "source": [ + "cbio.get_cbioportal_data(cbio.study_id, files={'mut': 'data_mutations.txt', 'cna': 'data_cna.txt', 'clin': 'data_clinical_sample.txt'})" + ] + }, + { + "cell_type": "code", + "execution_count": 16, + "id": "c31984c3-4f1b-4b4b-a055-c889ab4e1d52", + "metadata": {}, + "outputs": [], + "source": [ + "data = cbio.data" + ] + }, + { + "cell_type": "code", + "execution_count": 21, + "id": "3b9f4c71-0b01-47d5-8ddc-7361fb4ed5ca", + "metadata": {}, + "outputs": [ + { + "data": { + "text/html": [ + "<div>\n", + "<style scoped>\n", + " .dataframe tbody tr th:only-of-type {\n", + " vertical-align: middle;\n", + " }\n", + "\n", + " .dataframe tbody tr th {\n", + " vertical-align: top;\n", + " }\n", + "\n", + " .dataframe thead th {\n", + " text-align: right;\n", + " }\n", + "</style>\n", + "<table border=\"1\" class=\"dataframe\">\n", + " <thead>\n", + " <tr style=\"text-align: right;\">\n", + " <th></th>\n", + " <th>SAMPLE_ID</th>\n", + " <th>SAMPLE_COLLECTION_SOURCE</th>\n", + " <th>SPECIMEN_PRESERVATION_TYPE</th>\n", + " <th>SPECIMEN_TYPE</th>\n", + " <th>DNA_INPUT</th>\n", + " <th>SAMPLE_COVERAGE</th>\n", + " <th>TUMOR_PURITY</th>\n", + " <th>MATCHED_STATUS</th>\n", + " <th>SAMPLE_TYPE</th>\n", + " <th>PRIMARY_SITE</th>\n", + " <th>METASTATIC_SITE</th>\n", + " <th>SAMPLE_CLASS</th>\n", + " <th>ONCOTREE_CODE</th>\n", + " <th>CANCER_TYPE</th>\n", + " <th>CANCER_TYPE_DETAILED</th>\n", + " <th>SOMATIC_STATUS</th>\n", + " <th>TMB_NONSYNONYMOUS</th>\n", + " </tr>\n", + " <tr>\n", + " <th>PATIENT_ID</th>\n", + " <th></th>\n", + " <th></th>\n", + " <th></th>\n", + " <th></th>\n", + " <th></th>\n", + " <th></th>\n", + " <th></th>\n", + " <th></th>\n", + " <th></th>\n", + " <th></th>\n", + " <th></th>\n", + " <th></th>\n", + " <th></th>\n", + " <th></th>\n", + " <th></th>\n", + " <th></th>\n", + " <th></th>\n", + " </tr>\n", + " </thead>\n", + " <tbody>\n", + " <tr>\n", + " <th>P-0000004</th>\n", + " <td>P-0000004-T01-IM3</td>\n", + " <td>Outside</td>\n", + " <td>FFPE</td>\n", + " <td>Biopsy</td>\n", + " <td>250.0</td>\n", + " <td>428.0</td>\n", + " <td>50.0</td>\n", + " <td>Matched</td>\n", + " <td>Primary</td>\n", + " <td>Breast</td>\n", + " <td>Not Applicable</td>\n", + " <td>Tumor</td>\n", + " <td>IDC</td>\n", + " <td>Breast Cancer</td>\n", + " <td>Breast Invasive Ductal Carcinoma</td>\n", + " <td>Matched</td>\n", + " <td>17.746485</td>\n", + " </tr>\n", + " <tr>\n", + " <th>P-0000015</th>\n", + " <td>P-0000015-T01-IM3</td>\n", + " <td>In-House</td>\n", + " <td>FFPE</td>\n", + " <td>Biopsy</td>\n", + " <td>198.0</td>\n", + " <td>281.0</td>\n", + " <td>40.0</td>\n", + " <td>Matched</td>\n", + " <td>Metastasis</td>\n", + " <td>Breast</td>\n", + " <td>Liver</td>\n", + " <td>Tumor</td>\n", + " <td>IDC</td>\n", + " <td>Breast Cancer</td>\n", + " <td>Breast Invasive Ductal Carcinoma</td>\n", + " <td>Matched</td>\n", + " <td>7.764087</td>\n", + " </tr>\n", + " <tr>\n", + " <th>P-0000023</th>\n", + " <td>P-0000023-T01-IM3</td>\n", + " <td>In-House</td>\n", + " <td>FFPE</td>\n", + " <td>Biopsy</td>\n", + " <td>250.0</td>\n", + " <td>454.0</td>\n", + " <td>30.0</td>\n", + " <td>Matched</td>\n", + " <td>Primary</td>\n", + " <td>Peritoneum</td>\n", + " <td>Not Applicable</td>\n", + " <td>Tumor</td>\n", + " <td>PEMESO</td>\n", + " <td>Mesothelioma</td>\n", + " <td>Peritoneal Mesothelioma</td>\n", + " <td>Matched</td>\n", + " <td>5.545777</td>\n", + " </tr>\n", + " <tr>\n", + " <th>P-0000024</th>\n", + " <td>P-0000024-T01-IM3</td>\n", + " <td>In-House</td>\n", + " <td>FFPE</td>\n", + " <td>Resection</td>\n", + " <td>250.0</td>\n", + " <td>1016.0</td>\n", + " <td>40.0</td>\n", + " <td>Matched</td>\n", + " <td>Metastasis</td>\n", + " <td>Uterus</td>\n", + " <td>Lung</td>\n", + " <td>Tumor</td>\n", + " <td>UEC</td>\n", + " <td>Endometrial Cancer</td>\n", + " <td>Uterine Endometrioid Carcinoma</td>\n", + " <td>Matched</td>\n", + " <td>6.654932</td>\n", + " </tr>\n", + " <tr>\n", + " <th>P-0000025</th>\n", + " <td>P-0000025-T02-IM5</td>\n", + " <td>In-House</td>\n", + " <td>FFPE</td>\n", + " <td>Biopsy</td>\n", + " <td>250.0</td>\n", + " <td>1147.0</td>\n", + " <td>30.0</td>\n", + " <td>Matched</td>\n", + " <td>Metastasis</td>\n", + " <td>Uterus</td>\n", + " <td>Peritoneum</td>\n", + " <td>Tumor</td>\n", + " <td>USC</td>\n", + " <td>Endometrial Cancer</td>\n", + " <td>Uterine Serous Carcinoma/Uterine Papillary Ser...</td>\n", + " <td>Matched</td>\n", + " <td>1.957439</td>\n", + " </tr>\n", + " </tbody>\n", + "</table>\n", + "</div>" + ], + "text/plain": [ + " SAMPLE_ID SAMPLE_COLLECTION_SOURCE \\\n", + "PATIENT_ID \n", + "P-0000004 P-0000004-T01-IM3 Outside \n", + "P-0000015 P-0000015-T01-IM3 In-House \n", + "P-0000023 P-0000023-T01-IM3 In-House \n", + "P-0000024 P-0000024-T01-IM3 In-House \n", + "P-0000025 P-0000025-T02-IM5 In-House \n", + "\n", + " SPECIMEN_PRESERVATION_TYPE SPECIMEN_TYPE DNA_INPUT \\\n", + "PATIENT_ID \n", + "P-0000004 FFPE Biopsy 250.0 \n", + "P-0000015 FFPE Biopsy 198.0 \n", + "P-0000023 FFPE Biopsy 250.0 \n", + "P-0000024 FFPE Resection 250.0 \n", + "P-0000025 FFPE Biopsy 250.0 \n", + "\n", + " SAMPLE_COVERAGE TUMOR_PURITY MATCHED_STATUS SAMPLE_TYPE \\\n", + "PATIENT_ID \n", + "P-0000004 428.0 50.0 Matched Primary \n", + "P-0000015 281.0 40.0 Matched Metastasis \n", + "P-0000023 454.0 30.0 Matched Primary \n", + "P-0000024 1016.0 40.0 Matched Metastasis \n", + "P-0000025 1147.0 30.0 Matched Metastasis \n", + "\n", + " PRIMARY_SITE METASTATIC_SITE SAMPLE_CLASS ONCOTREE_CODE \\\n", + "PATIENT_ID \n", + "P-0000004 Breast Not Applicable Tumor IDC \n", + "P-0000015 Breast Liver Tumor IDC \n", + "P-0000023 Peritoneum Not Applicable Tumor PEMESO \n", + "P-0000024 Uterus Lung Tumor UEC \n", + "P-0000025 Uterus Peritoneum Tumor USC \n", + "\n", + " CANCER_TYPE \\\n", + "PATIENT_ID \n", + "P-0000004 Breast Cancer \n", + "P-0000015 Breast Cancer \n", + "P-0000023 Mesothelioma \n", + "P-0000024 Endometrial Cancer \n", + "P-0000025 Endometrial Cancer \n", + "\n", + " CANCER_TYPE_DETAILED SOMATIC_STATUS \\\n", + "PATIENT_ID \n", + "P-0000004 Breast Invasive Ductal Carcinoma Matched \n", + "P-0000015 Breast Invasive Ductal Carcinoma Matched \n", + "P-0000023 Peritoneal Mesothelioma Matched \n", + "P-0000024 Uterine Endometrioid Carcinoma Matched \n", + "P-0000025 Uterine Serous Carcinoma/Uterine Papillary Ser... Matched \n", + "\n", + " TMB_NONSYNONYMOUS \n", + "PATIENT_ID \n", + "P-0000004 17.746485 \n", + "P-0000015 7.764087 \n", + "P-0000023 5.545777 \n", + "P-0000024 6.654932 \n", + "P-0000025 1.957439 " + ] + }, + "execution_count": 21, + "metadata": {}, + "output_type": "execute_result" + } + ], + "source": [ + "data['clin'].head()" + ] + }, + { + "cell_type": "code", + "execution_count": 22, + "id": "00c3c4b7-bca0-4688-8204-6a6d82877f44", + "metadata": {}, + "outputs": [], + "source": [ + "data['clin'].index = data['clin'].SAMPLE_ID" + ] + }, + { + "cell_type": "code", + "execution_count": 23, + "id": "169441c4-9aea-475c-b4b6-59b1f29f4188", + "metadata": {}, + "outputs": [], + "source": [ + "counts = np.unique(list(data['clin'].PRIMARY_SITE), return_counts=True) " + ] + }, + { + "cell_type": "code", + "execution_count": 24, + "id": "35108027-7bbc-4a52-a4a2-f27ad26525db", + "metadata": {}, + "outputs": [ + { + "data": { + "text/plain": [ + "(array([' Lung', 'Abdomen', 'Abdominal Wall', 'Adnexa', 'Adrenal Gland',\n", + " 'Ampulla of Vater', 'Anal', 'Anorectal Junction', 'Anus',\n", + " 'Appendix', 'Arm', 'Ascending Colon', 'Auditory Canal', 'Axilla',\n", + " 'Back', 'Bile Duct', 'Bladder', 'Blood', 'Blood Vessel', 'Bone',\n", + " 'Bone Marrow', 'Bowel', 'Brain', 'Breast', 'Buttock',\n", + " 'Cancer of Unknown Primary', 'Cecum', 'Cervix', 'Cheek', 'Chest',\n", + " 'Chest Wall', 'Clivus', 'Colon', 'Colorectal NOS', 'Conjunctiva',\n", + " 'Descending Colon', 'Diaphragm', 'Duodenum', 'Duodenum-Jejunum',\n", + " 'Ear Canal', 'Ectopic Embryonic Rest', 'Epidural', 'Esophagus',\n", + " 'Ethmoid Sinus', 'Eye', 'Eyelid', 'Femoral Tendon', 'Femoral Vein',\n", + " 'Fibula', 'Foot', 'Forearm', 'Forehead', 'GE Junction',\n", + " 'Gallbladder', 'Gastric Wall', 'Groin', 'Hard palate', 'Heart',\n", + " 'Hip', 'Hypopharynx', 'Ileocecal Valve', 'Ileum', 'Intraabdominal',\n", + " 'Intrahepatic Bile Duct', 'Jejunum', 'Kidney', 'Knee', 'Larynx',\n", + " 'Leg', 'Liver', 'Lower Extremity', 'Lung', 'Lymph Node',\n", + " 'Lymph node', 'Major Salivary Gland', 'Mandible', 'Maxilla',\n", + " 'Maxillary Sinus', 'Mediastinum', 'Mesentery',\n", + " 'Minor Salivary Gland', 'Muscle', 'Nailbed', 'Nasal Cavity',\n", + " 'Nasopharynx', 'Neck', 'Nerve Sheath', 'Not available', 'Omentum',\n", + " 'Oral Cavity', 'Orbit', 'Oropharynx', 'Ovary', 'Palate',\n", + " 'Pancreas', 'Paraspinal', 'Parotid', 'Parotid Gland', 'Pelvis',\n", + " 'Penis', 'Peri-colic gutter', 'Perineal', 'Perineal mass',\n", + " 'Perineum', 'Peritoneum', 'Periurethra', 'Pharynx',\n", + " 'Pituitary Gland', 'Pituitary Mass', 'Pleura', 'Pleural Fluid',\n", + " 'Porto-cava mass', 'Prostate', 'Pubic Mass', 'Rectosigmoid Colon',\n", + " 'Rectum', 'Retroperitoneum', 'Rib', 'Sacral Mass', 'Sacrum',\n", + " 'Salivary Gland', 'Scalp', 'Sigmoid Colon', 'Sinonasal', 'Sinus',\n", + " 'Skin', 'Skull', 'Skull Base', 'Small Bowel', 'Small Intestine',\n", + " 'Soft Palate', 'Soft Tissue', 'Spinal Cord', 'Spinal cord',\n", + " 'Spine', 'Spleen', 'Stomach', 'Submandibular Gland',\n", + " 'Subungual Toe', 'Sweat Gland', 'Testis', 'Thigh',\n", + " 'Thoracic Spine', 'Thymus', 'Thyroid', 'Tongue', 'Tonsil',\n", + " 'Trachea', 'Transverse Colon', 'Umbilical Mass', 'Unknown',\n", + " 'Upper Extremity', 'Upper Tract', 'Urethra', 'Uterus', 'Vagina',\n", + " 'Vulva', 'nan'], dtype='<U32'),\n", + " array([ 1, 19, 3, 1, 78, 15, 1, 1, 36, 81, 4,\n", + " 102, 1, 2, 3, 47, 323, 1, 5, 88, 1, 1,\n", + " 582, 1258, 4, 211, 137, 49, 1, 1, 12, 1, 13,\n", + " 16, 4, 53, 1, 20, 1, 1, 1, 4, 125, 3,\n", + " 51, 5, 1, 1, 1, 8, 1, 1, 38, 51, 1,\n", + " 6, 1, 7, 1, 3, 2, 11, 10, 1, 11, 330,\n", + " 2, 20, 17, 255, 33, 1673, 19, 87, 49, 1, 8,\n", + " 1, 55, 5, 24, 4, 3, 1, 21, 13, 1, 27,\n", + " 3, 47, 1, 40, 240, 1, 497, 1, 2, 11, 27,\n", + " 8, 1, 1, 1, 1, 14, 1, 6, 1, 1, 81,\n", + " 1, 1, 622, 1, 95, 255, 80, 1, 2, 1, 8,\n", + " 11, 266, 10, 8, 326, 1, 1, 61, 1, 1, 148,\n", + " 1, 1, 3, 2, 237, 4, 1, 1, 232, 9, 1,\n", + " 17, 223, 11, 9, 6, 87, 1, 3, 9, 79, 9,\n", + " 306, 13, 10, 1]))" + ] + }, + "execution_count": 24, + "metadata": {}, + "output_type": "execute_result" + } + ], + "source": [ + "counts" + ] + }, + { + "cell_type": "code", + "execution_count": 25, + "id": "118bc876-c86d-4bc4-a8b5-8e18487b083e", + "metadata": {}, + "outputs": [], + "source": [ + "cancer_types = counts[0][np.where(counts[1] > 300)]" + ] + }, + { + "cell_type": "code", + "execution_count": 26, + "id": "bdf59175-9ffb-4728-8117-e4ba70f039af", + "metadata": {}, + "outputs": [ + { + "data": { + "text/plain": [ + "array(['Bladder', 'Brain', 'Breast', 'Kidney', 'Lung', 'Pancreas',\n", + " 'Prostate', 'Skin', 'Uterus'], dtype='<U32')" + ] + }, + "execution_count": 26, + "metadata": {}, + "output_type": "execute_result" + } + ], + "source": [ + "cancer_types" + ] + }, + { + "cell_type": "code", + "execution_count": 27, + "id": "66cffb9b-2308-4ed3-a474-2f720dd54cf4", + "metadata": {}, + "outputs": [], + "source": [ + "clin_subset = data['clin'][data['clin']['PRIMARY_SITE'].isin(cancer_types)]" + ] + }, + { + "cell_type": "code", + "execution_count": 32, + "id": "11056225-b3fa-4f34-a3ca-7381786ca0de", + "metadata": {}, + "outputs": [], + "source": [ + "data['clin'] = clin_subset" + ] + }, + { + "cell_type": "code", + "execution_count": 30, + "id": "f38e6f68-deab-440c-98d6-5556078f06e5", + "metadata": {}, + "outputs": [ + { + "data": { + "text/plain": [ + "(5917, 17)" + ] + }, + "execution_count": 30, + "metadata": {}, + "output_type": "execute_result" + } + ], + "source": [ + "data['clin'].shape" + ] + }, + { + "cell_type": "code", + "execution_count": 31, + "id": "4488ad3d-c7eb-4b0a-9ce4-17883cca743a", + "metadata": {}, + "outputs": [ + { + "data": { + "text/html": [ + "<div>\n", + "<style scoped>\n", + " .dataframe tbody tr th:only-of-type {\n", + " vertical-align: middle;\n", + " }\n", + "\n", + " .dataframe tbody tr th {\n", + " vertical-align: top;\n", + " }\n", + "\n", + " .dataframe thead th {\n", + " text-align: right;\n", + " }\n", + "</style>\n", + "<table border=\"1\" class=\"dataframe\">\n", + " <thead>\n", + " <tr style=\"text-align: right;\">\n", + " <th></th>\n", + " <th>SAMPLE_ID</th>\n", + " <th>SAMPLE_COLLECTION_SOURCE</th>\n", + " <th>SPECIMEN_PRESERVATION_TYPE</th>\n", + " <th>SPECIMEN_TYPE</th>\n", + " <th>DNA_INPUT</th>\n", + " <th>SAMPLE_COVERAGE</th>\n", + " <th>TUMOR_PURITY</th>\n", + " <th>MATCHED_STATUS</th>\n", + " <th>SAMPLE_TYPE</th>\n", + " <th>PRIMARY_SITE</th>\n", + " <th>METASTATIC_SITE</th>\n", + " <th>SAMPLE_CLASS</th>\n", + " <th>ONCOTREE_CODE</th>\n", + " <th>CANCER_TYPE</th>\n", + " <th>CANCER_TYPE_DETAILED</th>\n", + " <th>SOMATIC_STATUS</th>\n", + " <th>TMB_NONSYNONYMOUS</th>\n", + " </tr>\n", + " <tr>\n", + " <th>SAMPLE_ID</th>\n", + " <th></th>\n", + " <th></th>\n", + " <th></th>\n", + " <th></th>\n", + " <th></th>\n", + " <th></th>\n", + " <th></th>\n", + " <th></th>\n", + " <th></th>\n", + " <th></th>\n", + " <th></th>\n", + " <th></th>\n", + " <th></th>\n", + " <th></th>\n", + " <th></th>\n", + " <th></th>\n", + " <th></th>\n", + " </tr>\n", + " </thead>\n", + " <tbody>\n", + " <tr>\n", + " <th>P-0000004-T01-IM3</th>\n", + " <td>P-0000004-T01-IM3</td>\n", + " <td>Outside</td>\n", + " <td>FFPE</td>\n", + " <td>Biopsy</td>\n", + " <td>250.0</td>\n", + " <td>428.0</td>\n", + " <td>50.0</td>\n", + " <td>Matched</td>\n", + " <td>Primary</td>\n", + " <td>Breast</td>\n", + " <td>Not Applicable</td>\n", + " <td>Tumor</td>\n", + " <td>IDC</td>\n", + " <td>Breast Cancer</td>\n", + " <td>Breast Invasive Ductal Carcinoma</td>\n", + " <td>Matched</td>\n", + " <td>17.746485</td>\n", + " </tr>\n", + " <tr>\n", + " <th>P-0000015-T01-IM3</th>\n", + " <td>P-0000015-T01-IM3</td>\n", + " <td>In-House</td>\n", + " <td>FFPE</td>\n", + " <td>Biopsy</td>\n", + " <td>198.0</td>\n", + " <td>281.0</td>\n", + " <td>40.0</td>\n", + " <td>Matched</td>\n", + " <td>Metastasis</td>\n", + " <td>Breast</td>\n", + " <td>Liver</td>\n", + " <td>Tumor</td>\n", + " <td>IDC</td>\n", + " <td>Breast Cancer</td>\n", + " <td>Breast Invasive Ductal Carcinoma</td>\n", + " <td>Matched</td>\n", + " <td>7.764087</td>\n", + " </tr>\n", + " <tr>\n", + " <th>P-0000024-T01-IM3</th>\n", + " <td>P-0000024-T01-IM3</td>\n", + " <td>In-House</td>\n", + " <td>FFPE</td>\n", + " <td>Resection</td>\n", + " <td>250.0</td>\n", + " <td>1016.0</td>\n", + " <td>40.0</td>\n", + " <td>Matched</td>\n", + " <td>Metastasis</td>\n", + " <td>Uterus</td>\n", + " <td>Lung</td>\n", + " <td>Tumor</td>\n", + " <td>UEC</td>\n", + " <td>Endometrial Cancer</td>\n", + " <td>Uterine Endometrioid Carcinoma</td>\n", + " <td>Matched</td>\n", + " <td>6.654932</td>\n", + " </tr>\n", + " <tr>\n", + " <th>P-0000025-T02-IM5</th>\n", + " <td>P-0000025-T02-IM5</td>\n", + " <td>In-House</td>\n", + " <td>FFPE</td>\n", + " <td>Biopsy</td>\n", + " <td>250.0</td>\n", + " <td>1147.0</td>\n", + " <td>30.0</td>\n", + " <td>Matched</td>\n", + " <td>Metastasis</td>\n", + " <td>Uterus</td>\n", + " <td>Peritoneum</td>\n", + " <td>Tumor</td>\n", + " <td>USC</td>\n", + " <td>Endometrial Cancer</td>\n", + " <td>Uterine Serous Carcinoma/Uterine Papillary Ser...</td>\n", + " <td>Matched</td>\n", + " <td>1.957439</td>\n", + " </tr>\n", + " <tr>\n", + " <th>P-0000026-T01-IM3</th>\n", + " <td>P-0000026-T01-IM3</td>\n", + " <td>In-House</td>\n", + " <td>FFPE</td>\n", + " <td>Cytology</td>\n", + " <td>250.0</td>\n", + " <td>1222.0</td>\n", + " <td>10.0</td>\n", + " <td>Matched</td>\n", + " <td>Metastasis</td>\n", + " <td>Uterus</td>\n", + " <td>Pelvis</td>\n", + " <td>Tumor</td>\n", + " <td>UEC</td>\n", + " <td>Endometrial Cancer</td>\n", + " <td>Uterine Endometrioid Carcinoma</td>\n", + " <td>Matched</td>\n", + " <td>4.436621</td>\n", + " </tr>\n", + " <tr>\n", + " <th>...</th>\n", + " <td>...</td>\n", + " <td>...</td>\n", + " <td>...</td>\n", + " <td>...</td>\n", + " <td>...</td>\n", + " <td>...</td>\n", + " <td>...</td>\n", + " <td>...</td>\n", + " <td>...</td>\n", + " <td>...</td>\n", + " <td>...</td>\n", + " <td>...</td>\n", + " <td>...</td>\n", + " <td>...</td>\n", + " <td>...</td>\n", + " <td>...</td>\n", + " <td>...</td>\n", + " </tr>\n", + " <tr>\n", + " <th>P-0012405-T01-IM5</th>\n", + " <td>P-0012405-T01-IM5</td>\n", + " <td>In-House</td>\n", + " <td>FFPE</td>\n", + " <td>Resection</td>\n", + " <td>250.0</td>\n", + " <td>832.0</td>\n", + " <td>10.0</td>\n", + " <td>Matched</td>\n", + " <td>Primary</td>\n", + " <td>Pancreas</td>\n", + " <td>Not Applicable</td>\n", + " <td>Tumor</td>\n", + " <td>PAAD</td>\n", + " <td>Pancreatic Cancer</td>\n", + " <td>Pancreatic Adenocarcinoma</td>\n", + " <td>Matched</td>\n", + " <td>0.978720</td>\n", + " </tr>\n", + " <tr>\n", + " <th>P-0012434-T01-IM5</th>\n", + " <td>P-0012434-T01-IM5</td>\n", + " <td>Outside</td>\n", + " <td>FFPE</td>\n", + " <td>Biopsy</td>\n", + " <td>250.0</td>\n", + " <td>769.0</td>\n", + " <td>70.0</td>\n", + " <td>Matched</td>\n", + " <td>Primary</td>\n", + " <td>Brain</td>\n", + " <td>Not Applicable</td>\n", + " <td>Tumor</td>\n", + " <td>ODG</td>\n", + " <td>Glioma</td>\n", + " <td>Oligodendroglioma</td>\n", + " <td>Matched</td>\n", + " <td>2.936159</td>\n", + " </tr>\n", + " <tr>\n", + " <th>P-0012442-T01-IM5</th>\n", + " <td>P-0012442-T01-IM5</td>\n", + " <td>In-House</td>\n", + " <td>FFPE</td>\n", + " <td>Resection</td>\n", + " <td>250.0</td>\n", + " <td>815.0</td>\n", + " <td>30.0</td>\n", + " <td>Matched</td>\n", + " <td>Primary</td>\n", + " <td>Pancreas</td>\n", + " <td>Not Applicable</td>\n", + " <td>Tumor</td>\n", + " <td>PAAD</td>\n", + " <td>Pancreatic Cancer</td>\n", + " <td>Pancreatic Adenocarcinoma</td>\n", + " <td>Matched</td>\n", + " <td>1.957439</td>\n", + " </tr>\n", + " <tr>\n", + " <th>P-0012500-T01-IM5</th>\n", + " <td>P-0012500-T01-IM5</td>\n", + " <td>In-House</td>\n", + " <td>FFPE</td>\n", + " <td>Resection</td>\n", + " <td>250.0</td>\n", + " <td>812.0</td>\n", + " <td>50.0</td>\n", + " <td>Matched</td>\n", + " <td>Primary</td>\n", + " <td>Breast</td>\n", + " <td>Not Applicable</td>\n", + " <td>Tumor</td>\n", + " <td>BRCA</td>\n", + " <td>Breast Cancer</td>\n", + " <td>Invasive Breast Carcinoma</td>\n", + " <td>Matched</td>\n", + " <td>1.957439</td>\n", + " </tr>\n", + " <tr>\n", + " <th>P-0012557-T01-IM5</th>\n", + " <td>P-0012557-T01-IM5</td>\n", + " <td>Outside</td>\n", + " <td>FFPE</td>\n", + " <td>Biopsy</td>\n", + " <td>90.0</td>\n", + " <td>297.0</td>\n", + " <td>40.0</td>\n", + " <td>Matched</td>\n", + " <td>Metastasis</td>\n", + " <td>Bladder</td>\n", + " <td>Soft Tissue</td>\n", + " <td>Tumor</td>\n", + " <td>BLCA</td>\n", + " <td>Bladder Cancer</td>\n", + " <td>Bladder Urothelial Carcinoma</td>\n", + " <td>Matched</td>\n", + " <td>14.680795</td>\n", + " </tr>\n", + " </tbody>\n", + "</table>\n", + "<p>5917 rows × 17 columns</p>\n", + "</div>" + ], + "text/plain": [ + " SAMPLE_ID SAMPLE_COLLECTION_SOURCE \\\n", + "SAMPLE_ID \n", + "P-0000004-T01-IM3 P-0000004-T01-IM3 Outside \n", + "P-0000015-T01-IM3 P-0000015-T01-IM3 In-House \n", + "P-0000024-T01-IM3 P-0000024-T01-IM3 In-House \n", + "P-0000025-T02-IM5 P-0000025-T02-IM5 In-House \n", + "P-0000026-T01-IM3 P-0000026-T01-IM3 In-House \n", + "... ... ... \n", + "P-0012405-T01-IM5 P-0012405-T01-IM5 In-House \n", + "P-0012434-T01-IM5 P-0012434-T01-IM5 Outside \n", + "P-0012442-T01-IM5 P-0012442-T01-IM5 In-House \n", + "P-0012500-T01-IM5 P-0012500-T01-IM5 In-House \n", + "P-0012557-T01-IM5 P-0012557-T01-IM5 Outside \n", + "\n", + " SPECIMEN_PRESERVATION_TYPE SPECIMEN_TYPE DNA_INPUT \\\n", + "SAMPLE_ID \n", + "P-0000004-T01-IM3 FFPE Biopsy 250.0 \n", + "P-0000015-T01-IM3 FFPE Biopsy 198.0 \n", + "P-0000024-T01-IM3 FFPE Resection 250.0 \n", + "P-0000025-T02-IM5 FFPE Biopsy 250.0 \n", + "P-0000026-T01-IM3 FFPE Cytology 250.0 \n", + "... ... ... ... \n", + "P-0012405-T01-IM5 FFPE Resection 250.0 \n", + "P-0012434-T01-IM5 FFPE Biopsy 250.0 \n", + "P-0012442-T01-IM5 FFPE Resection 250.0 \n", + "P-0012500-T01-IM5 FFPE Resection 250.0 \n", + "P-0012557-T01-IM5 FFPE Biopsy 90.0 \n", + "\n", + " SAMPLE_COVERAGE TUMOR_PURITY MATCHED_STATUS SAMPLE_TYPE \\\n", + "SAMPLE_ID \n", + "P-0000004-T01-IM3 428.0 50.0 Matched Primary \n", + "P-0000015-T01-IM3 281.0 40.0 Matched Metastasis \n", + "P-0000024-T01-IM3 1016.0 40.0 Matched Metastasis \n", + "P-0000025-T02-IM5 1147.0 30.0 Matched Metastasis \n", + "P-0000026-T01-IM3 1222.0 10.0 Matched Metastasis \n", + "... ... ... ... ... \n", + "P-0012405-T01-IM5 832.0 10.0 Matched Primary \n", + "P-0012434-T01-IM5 769.0 70.0 Matched Primary \n", + "P-0012442-T01-IM5 815.0 30.0 Matched Primary \n", + "P-0012500-T01-IM5 812.0 50.0 Matched Primary \n", + "P-0012557-T01-IM5 297.0 40.0 Matched Metastasis \n", + "\n", + " PRIMARY_SITE METASTATIC_SITE SAMPLE_CLASS ONCOTREE_CODE \\\n", + "SAMPLE_ID \n", + "P-0000004-T01-IM3 Breast Not Applicable Tumor IDC \n", + "P-0000015-T01-IM3 Breast Liver Tumor IDC \n", + "P-0000024-T01-IM3 Uterus Lung Tumor UEC \n", + "P-0000025-T02-IM5 Uterus Peritoneum Tumor USC \n", + "P-0000026-T01-IM3 Uterus Pelvis Tumor UEC \n", + "... ... ... ... ... \n", + "P-0012405-T01-IM5 Pancreas Not Applicable Tumor PAAD \n", + "P-0012434-T01-IM5 Brain Not Applicable Tumor ODG \n", + "P-0012442-T01-IM5 Pancreas Not Applicable Tumor PAAD \n", + "P-0012500-T01-IM5 Breast Not Applicable Tumor BRCA \n", + "P-0012557-T01-IM5 Bladder Soft Tissue Tumor BLCA \n", + "\n", + " CANCER_TYPE \\\n", + "SAMPLE_ID \n", + "P-0000004-T01-IM3 Breast Cancer \n", + "P-0000015-T01-IM3 Breast Cancer \n", + "P-0000024-T01-IM3 Endometrial Cancer \n", + "P-0000025-T02-IM5 Endometrial Cancer \n", + "P-0000026-T01-IM3 Endometrial Cancer \n", + "... ... \n", + "P-0012405-T01-IM5 Pancreatic Cancer \n", + "P-0012434-T01-IM5 Glioma \n", + "P-0012442-T01-IM5 Pancreatic Cancer \n", + "P-0012500-T01-IM5 Breast Cancer \n", + "P-0012557-T01-IM5 Bladder Cancer \n", + "\n", + " CANCER_TYPE_DETAILED \\\n", + "SAMPLE_ID \n", + "P-0000004-T01-IM3 Breast Invasive Ductal Carcinoma \n", + "P-0000015-T01-IM3 Breast Invasive Ductal Carcinoma \n", + "P-0000024-T01-IM3 Uterine Endometrioid Carcinoma \n", + "P-0000025-T02-IM5 Uterine Serous Carcinoma/Uterine Papillary Ser... \n", + "P-0000026-T01-IM3 Uterine Endometrioid Carcinoma \n", + "... ... \n", + "P-0012405-T01-IM5 Pancreatic Adenocarcinoma \n", + "P-0012434-T01-IM5 Oligodendroglioma \n", + "P-0012442-T01-IM5 Pancreatic Adenocarcinoma \n", + "P-0012500-T01-IM5 Invasive Breast Carcinoma \n", + "P-0012557-T01-IM5 Bladder Urothelial Carcinoma \n", + "\n", + " SOMATIC_STATUS TMB_NONSYNONYMOUS \n", + "SAMPLE_ID \n", + "P-0000004-T01-IM3 Matched 17.746485 \n", + "P-0000015-T01-IM3 Matched 7.764087 \n", + "P-0000024-T01-IM3 Matched 6.654932 \n", + "P-0000025-T02-IM5 Matched 1.957439 \n", + "P-0000026-T01-IM3 Matched 4.436621 \n", + "... ... ... \n", + "P-0012405-T01-IM5 Matched 0.978720 \n", + "P-0012434-T01-IM5 Matched 2.936159 \n", + "P-0012442-T01-IM5 Matched 1.957439 \n", + "P-0012500-T01-IM5 Matched 1.957439 \n", + "P-0012557-T01-IM5 Matched 14.680795 \n", + "\n", + "[5917 rows x 17 columns]" + ] + }, + "execution_count": 31, + "metadata": {}, + "output_type": "execute_result" + } + ], + "source": [ + "data['clin']" + ] + }, + { + "cell_type": "code", + "execution_count": 33, + "id": "00447551-ed7c-48b5-b862-e7b1f430f713", + "metadata": {}, + "outputs": [], + "source": [ + "cbio.data = data" + ] + }, + { + "cell_type": "code", + "execution_count": 34, + "id": "787cd400-06de-4e90-95bf-0471a1124ad8", + "metadata": {}, + "outputs": [], + "source": [ + "dat_split = cbio.split_data()" + ] + }, + { + "cell_type": "code", + "execution_count": 35, + "id": "83b1997d-33b8-46c5-ab40-f8a4af21b92e", + "metadata": {}, + "outputs": [ + { + "data": { + "text/plain": [ + "{'mut': (414, 1696), 'cna': (410, 1775), 'clin': (1775, 17)}" + ] + }, + "execution_count": 35, + "metadata": {}, + "output_type": "execute_result" + } + ], + "source": [ + "{x: dat_split['test'][x].shape for x in dat_split['test'].keys()}" + ] + }, + { + "cell_type": "code", + "execution_count": 36, + "id": "54d4b72b-4992-4367-8f14-d5d6f950c8fb", + "metadata": {}, + "outputs": [ + { + "data": { + "text/plain": [ + "{'mut': (414, 3918), 'cna': (410, 4142), 'clin': (4142, 17)}" + ] + }, + "execution_count": 36, + "metadata": {}, + "output_type": "execute_result" + } + ], + "source": [ + "{x: dat_split['train'][x].shape for x in dat_split['train'].keys()}" + ] + }, + { + "cell_type": "code", + "execution_count": 38, + "id": "d72aaa38-3ae6-45ba-8f85-c3cd790a4c6b", + "metadata": {}, + "outputs": [], + "source": [ + "cbio.print_dataset(dat_split, 'msk_impact')" + ] + }, + { + "cell_type": "code", + "execution_count": 39, + "id": "4418a4fc-b060-4b55-bcb9-02626245d72e", + "metadata": {}, + "outputs": [ + { + "name": "stdout", + "output_type": "stream", + "text": [ + "\n", + "[INFO] ================= Importing Data =================\n", + "[INFO] Validating data folders...\n", + "\n", + "[INFO] ----------------- Reading Data ----------------- \n", + "[INFO] Importing msk_impact/train/cna.csv...\n", + "[INFO] Importing msk_impact/train/mut.csv...\n", + "[INFO] Importing msk_impact/train/clin.csv...\n", + "\n", + "[INFO] ----------------- Reading Data ----------------- \n", + "[INFO] Importing msk_impact/test/cna.csv...\n", + "[INFO] Importing msk_impact/test/mut.csv...\n", + "[INFO] Importing msk_impact/test/clin.csv...\n", + "\n", + "[INFO] ----------------- Checking for problems with the input data ----------------- \n", + "\n", + "[WARNING] Warnings:\n", + "\n", + "[WARNING] 1. Warning: Some sample labels in train/clin.csv are missing in train/mut.csv: {'P-0006147-T02-IM5', 'P-0001837-T01-IM3', 'P-0007050-T01-IM5', 'P-0007211-T01-IM5', 'P-0003993-T01-IM5', 'P-0008335-T01-IM5', 'P-0005909-T01-IM5', 'P-0006185-T01-IM5', 'P-0009472-T01-IM5', 'P-0004976-T01-IM5', 'P-0000350-T01-IM3', 'P-0008072-T01-IM5', 'P-0000544-T01-IM3', 'P-0008054-T01-IM5', 'P-0005278-T01-IM5', 'P-0005321-T01-IM5', 'P-0000266-T01-IM3', 'P-0003622-T01-IM5', 'P-0004345-T01-IM5', 'P-0004884-T01-IM5', 'P-0010683-T01-IM5', 'P-0006278-T01-IM5', 'P-0002807-T01-IM3', 'P-0009796-T02-IM5', 'P-0008208-T01-IM5', 'P-0011424-T01-IM5', 'P-0003684-T01-IM5', 'P-0007350-T01-IM5', 'P-0004467-T01-IM5', 'P-0003912-T01-IM3', 'P-0006573-T01-IM5', 'P-0011037-T01-IM5', 'P-0001060-T01-IM3', 'P-0011525-T01-IM5', 'P-0000808-T01-IM3', 'P-0001032-T01-IM3', 'P-0001988-T01-IM3', 'P-0006299-T01-IM5', 'P-0005513-T01-IM5', 'P-0001818-T01-IM3', 'P-0007424-T01-IM5', 'P-0002101-T01-IM3', 'P-0011214-T01-IM5', 'P-0011548-T01-IM5', 'P-0004452-T01-IM5', 'P-0005596-T01-IM5', 'P-0004532-T01-IM5', 'P-0001604-T01-IM3', 'P-0011501-T01-IM5', 'P-0003801-T01-IM5', 'P-0010842-T01-IM5', 'P-0012131-T01-IM5', 'P-0004516-T01-IM5', 'P-0002981-T01-IM3', 'P-0002283-T01-IM3', 'P-0005689-T01-IM5', 'P-0001838-T01-IM3', 'P-0001537-T01-IM3', 'P-0011251-T01-IM5', 'P-0010179-T01-IM5', 'P-0004333-T01-IM5', 'P-0012136-T01-IM5', 'P-0006549-T01-IM5', 'P-0011475-T01-IM5', 'P-0001552-T02-IM5', 'P-0003356-T01-IM5', 'P-0007662-T01-IM5', 'P-0001117-T01-IM3', 'P-0000116-T01-IM3', 'P-0003605-T01-IM5', 'P-0002082-T01-IM3', 'P-0000990-T02-IM3', 'P-0012141-T01-IM5', 'P-0001713-T01-IM3', 'P-0006313-T01-IM5', 'P-0004428-T01-IM5', 'P-0000479-T01-IM3', 'P-0006389-T01-IM5', 'P-0001429-T01-IM3', 'P-0010945-T01-IM5', 'P-0005834-T01-IM5', 'P-0005438-T01-IM5', 'P-0003470-T01-IM5', 'P-0007770-T01-IM5', 'P-0012190-T01-IM5', 'P-0002722-T01-IM3', 'P-0011311-T01-IM5', 'P-0006401-T02-IM5', 'P-0009947-T01-IM5', 'P-0005193-T01-IM5', 'P-0005052-T01-IM5', 'P-0003606-T01-IM5', 'P-0007647-T01-IM5', 'P-0005108-T01-IM5', 'P-0000638-T01-IM3', 'P-0001645-T01-IM3', 'P-0001737-T01-IM3', 'P-0001413-T01-IM3', 'P-0002481-T01-IM3', 'P-0009338-T01-IM5', 'P-0001138-T01-IM3', 'P-0005638-T01-IM5', 'P-0002942-T01-IM3', 'P-0009073-T01-IM5', 'P-0002735-T01-IM3', 'P-0006673-T01-IM5', 'P-0004343-T01-IM5', 'P-0000962-T01-IM3', 'P-0010029-T01-IM5', 'P-0008289-T01-IM5', 'P-0005649-T01-IM5', 'P-0011134-T01-IM5', 'P-0005557-T01-IM5', 'P-0007915-T01-IM5', 'P-0009926-T01-IM5', 'P-0012195-T01-IM5', 'P-0009444-T01-IM5', 'P-0001576-T01-IM3', 'P-0002583-T01-IM3', 'P-0012029-T01-IM5', 'P-0005387-T01-IM5', 'P-0004717-T01-IM5', 'P-0005901-T01-IM5', 'P-0003667-T01-IM5', 'P-0003061-T01-IM3', 'P-0002223-T01-IM3', 'P-0010808-T01-IM5', 'P-0002895-T01-IM3', 'P-0003001-T01-IM3', 'P-0010182-T01-IM5', 'P-0001694-T01-IM3', 'P-0000872-T01-IM3', 'P-0002024-T01-IM3', 'P-0010897-T01-IM5', 'P-0002360-T01-IM3', 'P-0010806-T01-IM5', 'P-0006893-T01-IM5', 'P-0003448-T01-IM5', 'P-0011019-T01-IM5', 'P-0003626-T01-IM5', 'P-0009077-T01-IM5', 'P-0004943-T01-IM5', 'P-0006311-T01-IM5', 'P-0000998-T01-IM3', 'P-0005086-T01-IM5', 'P-0005914-T01-IM5', 'P-0011576-T01-IM5', 'P-0004816-T01-IM5', 'P-0003677-T01-IM5', 'P-0004947-T01-IM5', 'P-0012213-T01-IM5', 'P-0003173-T01-IM5', 'P-0006346-T01-IM5', 'P-0000421-T01-IM3', 'P-0007098-T01-IM5', 'P-0011095-T01-IM5', 'P-0012062-T01-IM5', 'P-0000521-T01-IM3', 'P-0001563-T01-IM3', 'P-0011035-T01-IM5', 'P-0001606-T01-IM3', 'P-0003294-T01-IM5', 'P-0009176-T01-IM5', 'P-0012271-T01-IM5', 'P-0002431-T01-IM3', 'P-0007042-T01-IM5', 'P-0002661-T01-IM3', 'P-0008731-T01-IM5', 'P-0009440-T01-IM5', 'P-0007106-T01-IM5', 'P-0009562-T01-IM5', 'P-0004653-T01-IM5', 'P-0004576-T01-IM5', 'P-0002538-T01-IM3', 'P-0000689-T01-IM3', 'P-0012159-T01-IM5', 'P-0011382-T01-IM5', 'P-0003546-T01-IM5', 'P-0003411-T01-IM5', 'P-0003806-T01-IM5', 'P-0001839-T01-IM3', 'P-0001206-T01-IM3', 'P-0002217-T02-IM3', 'P-0010076-T01-IM5', 'P-0009241-T01-IM5', 'P-0005590-T01-IM5', 'P-0005095-T01-IM5', 'P-0012275-T01-IM5', 'P-0011428-T01-IM5', 'P-0011152-T01-IM5', 'P-0009359-T01-IM5', 'P-0007851-T01-IM5', 'P-0008395-T01-IM5', 'P-0008542-T01-IM5', 'P-0006005-T01-IM5', 'P-0005397-T01-IM5', 'P-0008319-T01-IM5', 'P-0007143-T01-IM5', 'P-0009539-T01-IM5', 'P-0010658-T01-IM5', 'P-0010200-T01-IM5', 'P-0005081-T01-IM5', 'P-0007853-T01-IM5', 'P-0000401-T01-IM3', 'P-0011289-T01-IM5', 'P-0010389-T01-IM5', 'P-0009610-T01-IM5', 'P-0003974-T01-IM3', 'P-0010127-T01-IM5', 'P-0002017-T01-IM3', 'P-0006514-T01-IM5', 'P-0000504-T01-IM3', 'P-0002182-T01-IM3', 'P-0010721-T01-IM5', 'P-0002408-T02-IM5', 'P-0006746-T01-IM5', 'P-0007351-T01-IM5', 'P-0001880-T01-IM3', 'P-0003066-T01-IM3', 'P-0008832-T01-IM5', 'P-0009597-T01-IM5', 'P-0007652-T01-IM5', 'P-0012039-T01-IM5', 'P-0004218-T01-IM5'}\n", + "[WARNING] 2. Warning: Some sample labels in test/clin.csv are missing in test/mut.csv: {'P-0001390-T01-IM3', 'P-0001834-T01-IM3', 'P-0006579-T01-IM5', 'P-0004700-T01-IM5', 'P-0005759-T01-IM5', 'P-0004001-T01-IM3', 'P-0002772-T01-IM3', 'P-0009853-T02-IM5', 'P-0008537-T01-IM5', 'P-0011336-T01-IM5', 'P-0005519-T01-IM5', 'P-0011587-T01-IM5', 'P-0005437-T01-IM5', 'P-0010724-T01-IM5', 'P-0009300-T01-IM5', 'P-0001187-T01-IM3', 'P-0010674-T01-IM5', 'P-0009097-T01-IM5', 'P-0009006-T01-IM5', 'P-0009120-T01-IM5', 'P-0006689-T01-IM5', 'P-0008960-T01-IM5', 'P-0002797-T01-IM3', 'P-0005329-T01-IM5', 'P-0002148-T01-IM3', 'P-0000603-T01-IM3', 'P-0004634-T01-IM5', 'P-0008581-T01-IM5', 'P-0001745-T02-IM5', 'P-0009536-T01-IM5', 'P-0006425-T01-IM5', 'P-0007125-T01-IM5', 'P-0009743-T01-IM5', 'P-0008393-T01-IM5', 'P-0006945-T01-IM5', 'P-0008147-T01-IM5', 'P-0000375-T02-IM5', 'P-0005693-T01-IM5', 'P-0007527-T01-IM5', 'P-0000474-T01-IM3', 'P-0008950-T01-IM5', 'P-0000585-T01-IM3', 'P-0005375-T01-IM5', 'P-0001355-T01-IM3', 'P-0003026-T01-IM3', 'P-0003689-T01-IM5', 'P-0002266-T01-IM3', 'P-0000837-T01-IM3', 'P-0004151-T01-IM5', 'P-0003317-T01-IM5', 'P-0006958-T01-IM5', 'P-0008044-T01-IM5', 'P-0008431-T01-IM5', 'P-0003583-T01-IM5', 'P-0006498-T01-IM5', 'P-0001956-T01-IM3', 'P-0004283-T01-IM5', 'P-0007286-T01-IM5', 'P-0011472-T01-IM5', 'P-0001925-T01-IM3', 'P-0006226-T01-IM5', 'P-0002333-T01-IM3', 'P-0005324-T01-IM5', 'P-0008955-T03-IM5', 'P-0001221-T01-IM3', 'P-0002853-T01-IM3', 'P-0007409-T01-IM5', 'P-0010870-T01-IM5', 'P-0001639-T01-IM3', 'P-0010021-T01-IM5', 'P-0011031-T01-IM5', 'P-0000250-T01-IM3', 'P-0001228-T01-IM3', 'P-0012322-T01-IM5', 'P-0005494-T01-IM5', 'P-0011092-T01-IM5', 'P-0006874-T01-IM5', 'P-0001191-T01-IM3', 'P-0012337-T01-IM5'}\n", + "\n", + "[INFO] ----------------- Processing Data (train) ----------------- \n", + "\n", + "[INFO] ----------------- Cleaning Up Data ----------------- \n", + "\n", + "[INFO] working on layer: mut\n", + "[INFO] Number of NA values: 0\n", + "[INFO] DataFrame mut - Removed 42 features.\n", + "\n", + "[INFO] working on layer: cna\n", + "[INFO] Number of NA values: 0\n", + "[INFO] DataFrame cna - Removed 42 features.\n", + "[INFO] DataFrame mut - Removed 1871 samples (47.75%).\n", + "[INFO] DataFrame cna - Removed 2021 samples (48.79%).\n", + "[INFO] Implementing feature selection using laplacian score for layer: mut with 372 features and 2047 samples \n", + "[INFO] No feature selection applied. Returning original matrix. Demanded # of features is larger than existing number of features\n", + "[INFO] Implementing feature selection using laplacian score for layer: cna with 368 features and 2047 samples \n", + "[INFO] No feature selection applied. Returning original matrix. Demanded # of features is larger than existing number of features\n", + "\n", + "[INFO] ----------------- Processing Data (test) ----------------- \n", + "\n", + "[INFO] ----------------- Cleaning Up Data ----------------- \n", + "\n", + "[INFO] working on layer: mut\n", + "[INFO] Number of NA values: 0\n", + "[INFO] DataFrame mut - Removed 45 features.\n", + "\n", + "[INFO] working on layer: cna\n", + "[INFO] Number of NA values: 0\n", + "[INFO] DataFrame cna - Removed 41 features.\n", + "[INFO] DataFrame mut - Removed 879 samples (51.83%).\n", + "[INFO] DataFrame cna - Removed 935 samples (52.68%).\n", + "\n", + "[INFO] ----------------- Harmonizing Data Sets ----------------- \n", + "\n", + "[INFO] ----------------- Finished Harmonizing ----------------- \n", + "\n", + "[INFO] ----------------- Normalizing Data ----------------- \n", + "\n", + "[INFO] ----------------- Normalizing Data ----------------- \n", + "[INFO] Training Data Stats: {'feature_count in: mut': 361, 'feature_count in: cna': 338, 'sample_count': 2047}\n", + "[INFO] Test Data Stats: {'feature_count in: mut': 361, 'feature_count in: cna': 338, 'sample_count': 817}\n", + "[INFO] Merging Feature Logs...\n", + "[INFO] Data import successful.\n" + ] + } + ], + "source": [ + "data_importer = flexynesis.DataImporter(path ='msk_impact/', \n", + " data_types = ['mut', 'cna'], \n", + " concatenate=False, top_percentile=90, variance_threshold=0.1,\n", + " min_features=500)\n", + "train_dataset, test_dataset = data_importer.import_data()" + ] + }, + { + "cell_type": "code", + "execution_count": 40, + "id": "1b02ca91-62a1-4f64-8060-fa428844bdff", + "metadata": {}, + "outputs": [ + { + "data": { + "text/plain": [ + "{'DNA_INPUT': tensor([250., 200., 250., ..., 250., 250., 250.], dtype=torch.float64),\n", + " 'SAMPLE_COVERAGE': tensor([629., 985., 986., ..., 721., 922., 894.], dtype=torch.float64),\n", + " 'TUMOR_PURITY': tensor([90., 70., 50., ..., 60., 80., 60.], dtype=torch.float64),\n", + " 'TMB_NONSYNONYMOUS': tensor([36.2126, 12.2007, 2.9362, ..., 47.9573, 1.9574, 2.9362],\n", + " dtype=torch.float64),\n", + " 'SAMPLE_ID.1': tensor([ 678., 41., 1992., ..., 1945., 1977., 1534.], dtype=torch.float64),\n", + " 'SAMPLE_COLLECTION_SOURCE': tensor([0., 0., 1., ..., 0., 0., 0.], dtype=torch.float64),\n", + " 'SPECIMEN_PRESERVATION_TYPE': tensor([2., 2., 2., ..., 2., 2., 2.], dtype=torch.float64),\n", + " 'SPECIMEN_TYPE': tensor([0., 0., 0., ..., 1., 0., 2.], dtype=torch.float64),\n", + " 'MATCHED_STATUS': tensor([0., 0., 0., ..., 0., 0., 0.], dtype=torch.float64),\n", + " 'SAMPLE_TYPE': tensor([1., 0., 1., ..., 0., 1., 0.], dtype=torch.float64),\n", + " 'PRIMARY_SITE': tensor([4., 2., 6., ..., 4., 1., 4.], dtype=torch.float64),\n", + " 'METASTATIC_SITE': tensor([30., 29., 30., ..., 24., 30., 10.], dtype=torch.float64),\n", + " 'SAMPLE_CLASS': tensor([0., 0., 0., ..., 0., 0., 0.], dtype=torch.float64),\n", + " 'ONCOTREE_CODE': tensor([43., 38., 67., ..., 58., 31., 43.], dtype=torch.float64),\n", + " 'CANCER_TYPE': tensor([15., 3., 18., ..., 15., 9., 15.], dtype=torch.float64),\n", + " 'CANCER_TYPE_DETAILED': tensor([44., 19., 67., ..., 66., 33., 44.], dtype=torch.float64),\n", + " 'SOMATIC_STATUS': tensor([0., 0., 0., ..., 0., 0., 0.], dtype=torch.float64)}" + ] + }, + "execution_count": 40, + "metadata": {}, + "output_type": "execute_result" + } + ], + "source": [ + "train_dataset.ann" + ] + }, + { + "cell_type": "code", + "execution_count": 41, + "id": "014b1006-3c2e-4afa-8c67-6f36a34ebf68", + "metadata": {}, + "outputs": [ + { + "data": { + "text/plain": [ + "(array([0., 1., 2., 3., 4., 5., 6., 7., 8.]),\n", + " array([128, 259, 574, 39, 546, 108, 200, 94, 99]))" + ] + }, + "execution_count": 41, + "metadata": {}, + "output_type": "execute_result" + } + ], + "source": [ + "np.unique(train_dataset.ann['PRIMARY_SITE'], return_counts=True)" + ] + }, + { + "cell_type": "code", + "execution_count": 42, + "id": "2d31ee94-26b3-4f5f-8642-41769fc4bbfd", + "metadata": {}, + "outputs": [ + { + "data": { + "text/plain": [ + "{0: 'Bladder',\n", + " 1: 'Brain',\n", + " 2: 'Breast',\n", + " 3: 'Kidney',\n", + " 4: 'Lung',\n", + " 5: 'Pancreas',\n", + " 6: 'Prostate',\n", + " 7: 'Skin',\n", + " 8: 'Uterus'}" + ] + }, + "execution_count": 42, + "metadata": {}, + "output_type": "execute_result" + } + ], + "source": [ + "train_dataset.label_mappings['PRIMARY_SITE']" + ] + }, + { + "cell_type": "code", + "execution_count": 43, + "id": "9290e957-88a4-4df9-a87c-49c698b59713", + "metadata": {}, + "outputs": [ + { + "name": "stdout", + "output_type": "stream", + "text": [ + "Summary for variable: DNA_INPUT\n", + "Numerical Variable Summary: Median = 250.0, Mean = 235.27487835857352\n", + "------\n", + "Summary for variable: SAMPLE_COVERAGE\n", + "Numerical Variable Summary: Median = 735.0, Mean = 731.0004885197851\n", + "------\n", + "Summary for variable: TUMOR_PURITY\n", + "Numerical Variable Summary: Median = 50.0, Mean = 50.638646847770374\n", + "------\n", + "Summary for variable: TMB_NONSYNONYMOUS\n", + "Numerical Variable Summary: Median = 4.436621202, Mean = 7.507028410360039\n", + "------\n", + "Summary for variable: SAMPLE_ID.1\n", + "Categorical Variable Summary:\n", + " Label: P-0000004-T01-IM3, Count: 1\n", + " Label: P-0000030-T01-IM3, Count: 1\n", + " Label: P-0000034-T01-IM3, Count: 1\n", + " Label: P-0000056-T01-IM3, Count: 1\n", + " Label: P-0000058-T01-IM3, Count: 1\n", + " Label: P-0000063-T01-IM3, Count: 1\n", + " Label: P-0000064-T02-IM3, Count: 1\n", + " Label: P-0000066-T01-IM3, Count: 1\n", + " Label: P-0000068-T01-IM3, Count: 1\n", + " Label: P-0000071-T01-IM3, Count: 1\n", + " Label: P-0000075-T01-IM3, Count: 1\n", + " Label: P-0000077-T01-IM3, Count: 1\n", + " Label: P-0000079-T01-IM3, Count: 1\n", + " Label: P-0000080-T01-IM3, Count: 1\n", + " Label: P-0000084-T01-IM3, Count: 1\n", + " Label: P-0000092-T01-IM3, Count: 1\n", + " Label: P-0000093-T01-IM3, Count: 1\n", + " Label: P-0000104-T01-IM3, Count: 1\n", + " Label: P-0000106-T01-IM3, Count: 1\n", + " Label: P-0000110-T01-IM3, Count: 1\n", + " Label: P-0000113-T01-IM3, Count: 1\n", + " Label: P-0000120-T01-IM3, Count: 1\n", + " Label: P-0000122-T01-IM3, Count: 1\n", + " Label: P-0000126-T01-IM3, Count: 1\n", + " Label: P-0000129-T01-IM3, Count: 1\n", + " Label: P-0000130-T01-IM3, Count: 1\n", + " Label: P-0000131-T01-IM3, Count: 1\n", + " Label: P-0000132-T01-IM3, Count: 1\n", + " Label: P-0000140-T01-IM3, Count: 1\n", + " Label: P-0000142-T01-IM3, Count: 1\n", + " Label: P-0000149-T01-IM3, Count: 1\n", + " Label: P-0000156-T01-IM3, Count: 1\n", + " Label: P-0000158-T01-IM3, Count: 1\n", + " Label: P-0000163-T02-IM3, Count: 1\n", + " Label: P-0000165-T01-IM3, Count: 1\n", + " Label: P-0000167-T02-IM3, Count: 1\n", + " Label: P-0000183-T01-IM3, Count: 1\n", + " Label: P-0000187-T01-IM3, Count: 1\n", + " Label: P-0000190-T01-IM3, Count: 1\n", + " Label: P-0000191-T01-IM3, Count: 1\n", + " Label: P-0000195-T01-IM3, Count: 1\n", + " Label: P-0000201-T01-IM3, Count: 1\n", + " Label: P-0000204-T01-IM3, Count: 1\n", + " Label: P-0000205-T01-IM3, Count: 1\n", + " Label: P-0000209-T02-IM3, Count: 1\n", + " Label: P-0000215-T01-IM3, Count: 1\n", + " Label: P-0000220-T01-IM3, Count: 1\n", + " Label: P-0000223-T01-IM3, Count: 1\n", + " Label: P-0000235-T01-IM3, Count: 1\n", + " Label: P-0000242-T01-IM3, Count: 1\n", + " Label: P-0000244-T01-IM3, Count: 1\n", + " Label: P-0000247-T02-IM5, Count: 1\n", + " Label: P-0000252-T01-IM3, Count: 1\n", + " Label: P-0000270-T01-IM3, Count: 1\n", + " Label: P-0000271-T01-IM3, Count: 1\n", + " Label: P-0000274-T01-IM3, Count: 1\n", + " Label: P-0000290-T01-IM3, Count: 1\n", + " Label: P-0000292-T01-IM3, Count: 1\n", + " Label: P-0000308-T01-IM3, Count: 1\n", + " Label: P-0000316-T01-IM3, Count: 1\n", + " Label: P-0000317-T01-IM3, Count: 1\n", + " Label: P-0000318-T01-IM3, Count: 1\n", + " Label: P-0000323-T01-IM3, Count: 1\n", + " Label: P-0000329-T01-IM3, Count: 1\n", + " Label: P-0000335-T02-IM3, Count: 1\n", + " Label: P-0000337-T01-IM3, Count: 1\n", + " Label: P-0000341-T01-IM3, Count: 1\n", + " Label: P-0000345-T01-IM3, Count: 1\n", + " Label: P-0000347-T01-IM3, Count: 1\n", + " Label: P-0000348-T01-IM3, Count: 1\n", + " Label: P-0000353-T01-IM3, Count: 1\n", + " Label: P-0000355-T01-IM3, Count: 1\n", + " Label: P-0000356-T01-IM3, Count: 1\n", + " Label: P-0000363-T01-IM3, Count: 1\n", + " Label: P-0000370-T01-IM3, Count: 1\n", + " Label: P-0000373-T02-IM5, Count: 1\n", + " Label: P-0000378-T01-IM3, Count: 1\n", + " Label: P-0000382-T01-IM3, Count: 1\n", + " Label: P-0000386-T02-IM5, Count: 1\n", + " Label: P-0000390-T01-IM3, Count: 1\n", + " Label: P-0000392-T01-IM3, Count: 1\n", + " Label: P-0000395-T01-IM3, Count: 1\n", + " Label: P-0000399-T01-IM3, Count: 1\n", + " Label: P-0000407-T01-IM3, Count: 1\n", + " Label: P-0000409-T01-IM3, Count: 1\n", + " Label: P-0000410-T01-IM3, Count: 1\n", + " Label: P-0000422-T02-IM3, Count: 1\n", + " Label: P-0000435-T01-IM3, Count: 1\n", + " Label: P-0000447-T01-IM3, Count: 1\n", + " Label: P-0000451-T01-IM3, Count: 1\n", + " Label: P-0000455-T01-IM3, Count: 1\n", + " Label: P-0000459-T01-IM3, Count: 1\n", + " Label: P-0000462-T01-IM3, Count: 1\n", + " Label: P-0000468-T01-IM3, Count: 1\n", + " Label: P-0000469-T01-IM3, Count: 1\n", + " Label: P-0000470-T02-IM5, Count: 1\n", + " Label: P-0000471-T01-IM3, Count: 1\n", + " Label: P-0000472-T01-IM3, Count: 1\n", + " Label: P-0000473-T01-IM3, Count: 1\n", + " Label: P-0000478-T01-IM3, Count: 1\n", + " Label: P-0000480-T01-IM3, Count: 1\n", + " Label: P-0000483-T01-IM3, Count: 1\n", + " Label: P-0000484-T01-IM3, Count: 1\n", + " Label: P-0000491-T01-IM3, Count: 1\n", + " Label: P-0000517-T01-IM3, Count: 1\n", + " Label: P-0000519-T01-IM3, Count: 1\n", + " Label: P-0000522-T01-IM3, Count: 1\n", + " Label: P-0000530-T01-IM3, Count: 1\n", + " Label: P-0000535-T01-IM3, Count: 1\n", + " Label: P-0000547-T01-IM3, Count: 1\n", + " Label: P-0000550-T05-IM3, Count: 1\n", + " Label: P-0000571-T01-IM3, Count: 1\n", + " Label: P-0000572-T01-IM3, Count: 1\n", + " Label: P-0000582-T01-IM3, Count: 1\n", + " Label: P-0000584-T01-IM3, Count: 1\n", + " Label: P-0000590-T01-IM3, Count: 1\n", + " Label: P-0000597-T01-IM3, Count: 1\n", + " Label: P-0000600-T01-IM3, Count: 1\n", + " Label: P-0000606-T01-IM3, Count: 1\n", + " Label: P-0000610-T01-IM3, Count: 1\n", + " Label: P-0000611-T01-IM3, Count: 1\n", + " Label: P-0000612-T01-IM3, Count: 1\n", + " Label: P-0000613-T01-IM3, Count: 1\n", + " Label: P-0000617-T01-IM3, Count: 1\n", + " Label: P-0000624-T02-IM5, Count: 1\n", + " Label: P-0000636-T01-IM3, Count: 1\n", + " Label: P-0000641-T01-IM3, Count: 1\n", + " Label: P-0000642-T01-IM3, Count: 1\n", + " Label: P-0000651-T01-IM3, Count: 1\n", + " Label: P-0000655-T01-IM3, Count: 1\n", + " Label: P-0000658-T01-IM3, Count: 1\n", + " Label: P-0000679-T01-IM3, Count: 1\n", + " Label: P-0000683-T01-IM3, Count: 1\n", + " Label: P-0000686-T01-IM3, Count: 1\n", + " Label: P-0000690-T03-IM5, Count: 1\n", + " Label: P-0000694-T01-IM3, Count: 1\n", + " Label: P-0000704-T01-IM3, Count: 1\n", + " Label: P-0000706-T01-IM3, Count: 1\n", + " Label: P-0000711-T01-IM3, Count: 1\n", + " Label: P-0000720-T01-IM3, Count: 1\n", + " Label: P-0000725-T01-IM3, Count: 1\n", + " Label: P-0000729-T01-IM3, Count: 1\n", + " Label: P-0000731-T01-IM3, Count: 1\n", + " Label: P-0000746-T01-IM3, Count: 1\n", + " Label: P-0000749-T01-IM3, Count: 1\n", + " Label: P-0000758-T01-IM3, Count: 1\n", + " Label: P-0000759-T01-IM3, Count: 1\n", + " Label: P-0000760-T01-IM3, Count: 1\n", + " Label: P-0000761-T01-IM3, Count: 1\n", + " Label: P-0000770-T01-IM3, Count: 1\n", + " Label: P-0000778-T01-IM3, Count: 1\n", + " Label: P-0000780-T01-IM3, Count: 1\n", + " Label: P-0000783-T01-IM3, Count: 1\n", + " Label: P-0000785-T01-IM3, Count: 1\n", + " Label: P-0000789-T01-IM3, Count: 1\n", + " Label: P-0000795-T01-IM3, Count: 1\n", + " Label: P-0000805-T01-IM3, Count: 1\n", + " Label: P-0000809-T01-IM3, Count: 1\n", + " Label: P-0000818-T01-IM3, Count: 1\n", + " Label: P-0000819-T01-IM3, Count: 1\n", + " Label: P-0000820-T01-IM3, Count: 1\n", + " Label: P-0000828-T02-IM3, Count: 1\n", + " Label: P-0000831-T01-IM3, Count: 1\n", + " Label: P-0000865-T01-IM3, Count: 1\n", + " Label: P-0000877-T01-IM3, Count: 1\n", + " Label: P-0000878-T01-IM3, Count: 1\n", + " Label: P-0000888-T01-IM3, Count: 1\n", + " Label: P-0000891-T01-IM3, Count: 1\n", + " Label: P-0000892-T01-IM3, Count: 1\n", + " Label: P-0000898-T01-IM3, Count: 1\n", + " Label: P-0000900-T01-IM3, Count: 1\n", + " Label: P-0000906-T01-IM3, Count: 1\n", + " Label: P-0000908-T01-IM3, Count: 1\n", + " Label: P-0000913-T02-IM5, Count: 1\n", + " Label: P-0000916-T01-IM3, Count: 1\n", + " Label: P-0000921-T01-IM3, Count: 1\n", + " Label: P-0000924-T01-IM3, Count: 1\n", + " Label: P-0000928-T01-IM3, Count: 1\n", + " Label: P-0000929-T01-IM3, Count: 1\n", + " Label: P-0000930-T01-IM3, Count: 1\n", + " Label: P-0000944-T01-IM3, Count: 1\n", + " Label: P-0000946-T01-IM3, Count: 1\n", + " Label: P-0000947-T01-IM3, Count: 1\n", + " Label: P-0000952-T02-IM5, Count: 1\n", + " Label: P-0000955-T01-IM3, Count: 1\n", + " Label: P-0000960-T01-IM3, Count: 1\n", + " Label: P-0000969-T01-IM3, Count: 1\n", + " Label: P-0000973-T01-IM3, Count: 1\n", + " Label: P-0000984-T01-IM3, Count: 1\n", + " Label: P-0000985-T01-IM3, Count: 1\n", + " Label: P-0000987-T01-IM3, Count: 1\n", + " Label: P-0000993-T01-IM3, Count: 1\n", + " Label: P-0001011-T01-IM3, Count: 1\n", + " Label: P-0001037-T01-IM3, Count: 1\n", + " Label: P-0001038-T01-IM3, Count: 1\n", + " Label: P-0001049-T01-IM3, Count: 1\n", + " Label: P-0001051-T01-IM3, Count: 1\n", + " Label: P-0001052-T01-IM3, Count: 1\n", + " Label: P-0001071-T01-IM3, Count: 1\n", + " Label: P-0001073-T01-IM3, Count: 1\n", + " Label: P-0001074-T01-IM3, Count: 1\n", + " Label: P-0001089-T01-IM3, Count: 1\n", + " Label: P-0001091-T01-IM3, Count: 1\n", + " Label: P-0001092-T01-IM3, Count: 1\n", + " Label: P-0001094-T01-IM3, Count: 1\n", + " Label: P-0001099-T01-IM3, Count: 1\n", + " Label: P-0001100-T01-IM3, Count: 1\n", + " Label: P-0001112-T01-IM3, Count: 1\n", + " Label: P-0001114-T02-IM3, Count: 1\n", + " Label: P-0001118-T01-IM3, Count: 1\n", + " Label: P-0001121-T01-IM3, Count: 1\n", + " Label: P-0001135-T02-IM3, Count: 1\n", + " Label: P-0001141-T01-IM3, Count: 1\n", + " Label: P-0001152-T01-IM3, Count: 1\n", + " Label: P-0001164-T01-IM3, Count: 1\n", + " Label: P-0001165-T01-IM3, Count: 1\n", + " Label: P-0001168-T01-IM3, Count: 1\n", + " Label: P-0001171-T01-IM3, Count: 1\n", + " Label: P-0001176-T01-IM3, Count: 1\n", + " Label: P-0001182-T01-IM3, Count: 1\n", + " Label: P-0001183-T01-IM3, Count: 1\n", + " Label: P-0001189-T01-IM3, Count: 1\n", + " Label: P-0001199-T01-IM3, Count: 1\n", + " Label: P-0001203-T01-IM3, Count: 1\n", + " Label: P-0001211-T01-IM3, Count: 1\n", + " Label: P-0001212-T01-IM3, Count: 1\n", + " Label: P-0001224-T02-IM3, Count: 1\n", + " Label: P-0001226-T01-IM3, Count: 1\n", + " Label: P-0001230-T01-IM3, Count: 1\n", + " Label: P-0001238-T01-IM3, Count: 1\n", + " Label: P-0001240-T01-IM3, Count: 1\n", + " Label: P-0001244-T02-IM3, Count: 1\n", + " Label: P-0001247-T01-IM3, Count: 1\n", + " Label: P-0001250-T01-IM3, Count: 1\n", + " Label: P-0001253-T01-IM3, Count: 1\n", + " Label: P-0001258-T01-IM3, Count: 1\n", + " Label: P-0001263-T01-IM3, Count: 1\n", + " Label: P-0001274-T01-IM3, Count: 1\n", + " Label: P-0001276-T01-IM3, Count: 1\n", + " Label: P-0001278-T01-IM3, Count: 1\n", + " Label: P-0001281-T01-IM3, Count: 1\n", + " Label: P-0001283-T01-IM3, Count: 1\n", + " Label: P-0001290-T01-IM3, Count: 1\n", + " Label: P-0001296-T01-IM3, Count: 1\n", + " Label: P-0001297-T01-IM3, Count: 1\n", + " Label: P-0001309-T01-IM3, Count: 1\n", + " Label: P-0001312-T01-IM3, Count: 1\n", + " Label: P-0001319-T05-IM5, Count: 1\n", + " Label: P-0001325-T02-IM5, Count: 1\n", + " Label: P-0001326-T01-IM3, Count: 1\n", + " Label: P-0001331-T01-IM3, Count: 1\n", + " Label: P-0001332-T01-IM3, Count: 1\n", + " Label: P-0001338-T01-IM3, Count: 1\n", + " Label: P-0001341-T01-IM3, Count: 1\n", + " Label: P-0001350-T01-IM3, Count: 1\n", + " Label: P-0001352-T01-IM3, Count: 1\n", + " Label: P-0001357-T02-IM5, Count: 1\n", + " Label: P-0001365-T01-IM3, Count: 1\n", + " Label: P-0001367-T01-IM3, Count: 1\n", + " Label: P-0001368-T01-IM3, Count: 1\n", + " Label: P-0001372-T01-IM3, Count: 1\n", + " Label: P-0001375-T01-IM3, Count: 1\n", + " Label: P-0001376-T01-IM3, Count: 1\n", + " Label: P-0001383-T01-IM3, Count: 1\n", + " Label: P-0001388-T01-IM3, Count: 1\n", + " Label: P-0001397-T01-IM3, Count: 1\n", + " Label: P-0001406-T01-IM3, Count: 1\n", + " Label: P-0001407-T01-IM3, Count: 1\n", + " Label: P-0001408-T01-IM3, Count: 1\n", + " Label: P-0001412-T01-IM3, Count: 1\n", + " Label: P-0001415-T01-IM3, Count: 1\n", + " Label: P-0001419-T01-IM3, Count: 1\n", + " Label: P-0001420-T02-IM5, Count: 1\n", + " Label: P-0001423-T01-IM3, Count: 1\n", + " Label: P-0001426-T01-IM3, Count: 1\n", + " Label: P-0001432-T02-IM5, Count: 1\n", + " Label: P-0001433-T01-IM3, Count: 1\n", + " Label: P-0001439-T01-IM3, Count: 1\n", + " Label: P-0001443-T01-IM3, Count: 1\n", + " Label: P-0001447-T01-IM3, Count: 1\n", + " Label: P-0001449-T02-IM5, Count: 1\n", + " Label: P-0001453-T01-IM3, Count: 1\n", + " Label: P-0001456-T01-IM3, Count: 1\n", + " Label: P-0001462-T01-IM3, Count: 1\n", + " Label: P-0001468-T01-IM3, Count: 1\n", + " Label: P-0001474-T01-IM3, Count: 1\n", + " Label: P-0001475-T01-IM3, Count: 1\n", + " Label: P-0001481-T01-IM3, Count: 1\n", + " Label: P-0001483-T01-IM3, Count: 1\n", + " Label: P-0001487-T01-IM3, Count: 1\n", + " Label: P-0001488-T01-IM3, Count: 1\n", + " Label: P-0001489-T01-IM3, Count: 1\n", + " Label: P-0001504-T02-IM5, Count: 1\n", + " Label: P-0001505-T02-IM3, Count: 1\n", + " Label: P-0001506-T01-IM3, Count: 1\n", + " Label: P-0001509-T01-IM3, Count: 1\n", + " Label: P-0001515-T01-IM3, Count: 1\n", + " Label: P-0001516-T01-IM3, Count: 1\n", + " Label: P-0001528-T03-IM5, Count: 1\n", + " Label: P-0001536-T01-IM3, Count: 1\n", + " Label: P-0001546-T02-IM5, Count: 1\n", + " Label: P-0001548-T01-IM3, Count: 1\n", + " Label: P-0001549-T01-IM3, Count: 1\n", + " Label: P-0001558-T01-IM3, Count: 1\n", + " Label: P-0001559-T01-IM3, Count: 1\n", + " Label: P-0001560-T01-IM3, Count: 1\n", + " Label: P-0001568-T01-IM3, Count: 1\n", + " Label: P-0001571-T01-IM3, Count: 1\n", + " Label: P-0001578-T01-IM3, Count: 1\n", + " Label: P-0001579-T01-IM3, Count: 1\n", + " Label: P-0001582-T01-IM3, Count: 1\n", + " Label: P-0001589-T01-IM3, Count: 1\n", + " Label: P-0001594-T01-IM3, Count: 1\n", + " Label: P-0001595-T01-IM3, Count: 1\n", + " Label: P-0001601-T01-IM3, Count: 1\n", + " Label: P-0001613-T02-IM5, Count: 1\n", + " Label: P-0001623-T01-IM3, Count: 1\n", + " Label: P-0001632-T01-IM3, Count: 1\n", + " Label: P-0001637-T01-IM3, Count: 1\n", + " Label: P-0001643-T01-IM3, Count: 1\n", + " Label: P-0001648-T01-IM3, Count: 1\n", + " Label: P-0001661-T01-IM3, Count: 1\n", + " Label: P-0001664-T01-IM3, Count: 1\n", + " Label: P-0001687-T01-IM3, Count: 1\n", + " Label: P-0001696-T01-IM3, Count: 1\n", + " Label: P-0001698-T01-IM3, Count: 1\n", + " Label: P-0001704-T01-IM3, Count: 1\n", + " Label: P-0001706-T01-IM3, Count: 1\n", + " Label: P-0001707-T01-IM3, Count: 1\n", + " Label: P-0001715-T01-IM3, Count: 1\n", + " Label: P-0001721-T01-IM3, Count: 1\n", + " Label: P-0001723-T01-IM3, Count: 1\n", + " Label: P-0001726-T01-IM3, Count: 1\n", + " Label: P-0001728-T02-IM5, Count: 1\n", + " Label: P-0001731-T01-IM3, Count: 1\n", + " Label: P-0001744-T01-IM3, Count: 1\n", + " Label: P-0001750-T01-IM3, Count: 1\n", + " Label: P-0001751-T01-IM3, Count: 1\n", + " Label: P-0001753-T01-IM3, Count: 1\n", + " Label: P-0001755-T01-IM3, Count: 1\n", + " Label: P-0001756-T01-IM3, Count: 1\n", + " Label: P-0001757-T01-IM3, Count: 1\n", + " Label: P-0001773-T01-IM3, Count: 1\n", + " Label: P-0001774-T01-IM3, Count: 1\n", + " Label: P-0001777-T01-IM3, Count: 1\n", + " Label: P-0001787-T01-IM3, Count: 1\n", + " Label: P-0001790-T01-IM3, Count: 1\n", + " Label: P-0001797-T01-IM3, Count: 1\n", + " Label: P-0001798-T01-IM3, Count: 1\n", + " Label: P-0001802-T01-IM3, Count: 1\n", + " Label: P-0001805-T01-IM3, Count: 1\n", + " Label: P-0001813-T01-IM3, Count: 1\n", + " Label: P-0001814-T01-IM3, Count: 1\n", + " Label: P-0001817-T02-IM5, Count: 1\n", + " Label: P-0001819-T01-IM3, Count: 1\n", + " Label: P-0001822-T01-IM3, Count: 1\n", + " Label: P-0001826-T01-IM3, Count: 1\n", + " Label: P-0001832-T01-IM3, Count: 1\n", + " Label: P-0001840-T01-IM3, Count: 1\n", + " Label: P-0001843-T01-IM3, Count: 1\n", + " Label: P-0001845-T01-IM3, Count: 1\n", + " Label: P-0001859-T01-IM3, Count: 1\n", + " Label: P-0001860-T01-IM3, Count: 1\n", + " Label: P-0001861-T01-IM3, Count: 1\n", + " Label: P-0001862-T01-IM3, Count: 1\n", + " Label: P-0001863-T01-IM3, Count: 1\n", + " Label: P-0001875-T01-IM3, Count: 1\n", + " Label: P-0001877-T01-IM3, Count: 1\n", + " Label: P-0001882-T01-IM3, Count: 1\n", + " Label: P-0001884-T01-IM3, Count: 1\n", + " Label: P-0001886-T01-IM3, Count: 1\n", + " Label: P-0001887-T01-IM3, Count: 1\n", + " Label: P-0001888-T01-IM3, Count: 1\n", + " Label: P-0001894-T01-IM3, Count: 1\n", + " Label: P-0001898-T01-IM3, Count: 1\n", + " Label: P-0001899-T01-IM3, Count: 1\n", + " Label: P-0001904-T02-IM5, Count: 1\n", + " Label: P-0001915-T01-IM3, Count: 1\n", + " Label: P-0001927-T01-IM3, Count: 1\n", + " Label: P-0001928-T01-IM3, Count: 1\n", + " Label: P-0001932-T01-IM3, Count: 1\n", + " Label: P-0001934-T01-IM3, Count: 1\n", + " Label: P-0001935-T01-IM3, Count: 1\n", + " Label: P-0001936-T01-IM3, Count: 1\n", + " Label: P-0001937-T01-IM3, Count: 1\n", + " Label: P-0001939-T02-IM5, Count: 1\n", + " Label: P-0001945-T01-IM3, Count: 1\n", + " Label: P-0001967-T01-IM3, Count: 1\n", + " Label: P-0001970-T01-IM3, Count: 1\n", + " Label: P-0001972-T01-IM3, Count: 1\n", + " Label: P-0001975-T01-IM3, Count: 1\n", + " Label: P-0001976-T01-IM3, Count: 1\n", + " Label: P-0001979-T01-IM3, Count: 1\n", + " Label: P-0001994-T01-IM3, Count: 1\n", + " Label: P-0002001-T01-IM3, Count: 1\n", + " Label: P-0002004-T01-IM3, Count: 1\n", + " Label: P-0002013-T01-IM3, Count: 1\n", + " Label: P-0002021-T01-IM3, Count: 1\n", + " Label: P-0002036-T01-IM3, Count: 1\n", + " Label: P-0002040-T01-IM3, Count: 1\n", + " Label: P-0002046-T01-IM3, Count: 1\n", + " Label: P-0002060-T01-IM3, Count: 1\n", + " Label: P-0002075-T01-IM3, Count: 1\n", + " Label: P-0002088-T01-IM3, Count: 1\n", + " Label: P-0002093-T01-IM3, Count: 1\n", + " Label: P-0002096-T01-IM3, Count: 1\n", + " Label: P-0002100-T01-IM3, Count: 1\n", + " Label: P-0002123-T02-IM5, Count: 1\n", + " Label: P-0002124-T01-IM3, Count: 1\n", + " Label: P-0002126-T01-IM3, Count: 1\n", + " Label: P-0002127-T01-IM3, Count: 1\n", + " Label: P-0002128-T01-IM3, Count: 1\n", + " Label: P-0002131-T02-IM5, Count: 1\n", + " Label: P-0002138-T01-IM3, Count: 1\n", + " Label: P-0002139-T01-IM3, Count: 1\n", + " Label: P-0002151-T01-IM3, Count: 1\n", + " Label: P-0002177-T01-IM3, Count: 1\n", + " Label: P-0002181-T01-IM3, Count: 1\n", + " Label: P-0002186-T01-IM3, Count: 1\n", + " Label: P-0002187-T01-IM3, Count: 1\n", + " Label: P-0002188-T01-IM3, Count: 1\n", + " Label: P-0002194-T01-IM3, Count: 1\n", + " Label: P-0002197-T01-IM3, Count: 1\n", + " Label: P-0002202-T01-IM3, Count: 1\n", + " Label: P-0002207-T01-IM3, Count: 1\n", + " Label: P-0002216-T01-IM3, Count: 1\n", + " Label: P-0002218-T01-IM3, Count: 1\n", + " Label: P-0002226-T01-IM3, Count: 1\n", + " Label: P-0002229-T01-IM3, Count: 1\n", + " Label: P-0002232-T01-IM3, Count: 1\n", + " Label: P-0002234-T02-IM3, Count: 1\n", + " Label: P-0002237-T01-IM3, Count: 1\n", + " Label: P-0002244-T01-IM3, Count: 1\n", + " Label: P-0002245-T01-IM3, Count: 1\n", + " Label: P-0002248-T01-IM3, Count: 1\n", + " Label: P-0002249-T01-IM3, Count: 1\n", + " Label: P-0002252-T01-IM3, Count: 1\n", + " Label: P-0002265-T01-IM3, Count: 1\n", + " Label: P-0002272-T01-IM3, Count: 1\n", + " Label: P-0002284-T01-IM3, Count: 1\n", + " Label: P-0002290-T01-IM3, Count: 1\n", + " Label: P-0002296-T01-IM3, Count: 1\n", + " Label: P-0002304-T01-IM3, Count: 1\n", + " Label: P-0002305-T01-IM3, Count: 1\n", + " Label: P-0002307-T01-IM3, Count: 1\n", + " Label: P-0002311-T01-IM3, Count: 1\n", + " Label: P-0002313-T01-IM3, Count: 1\n", + " Label: P-0002314-T01-IM3, Count: 1\n", + " Label: P-0002315-T01-IM3, Count: 1\n", + " Label: P-0002316-T01-IM3, Count: 1\n", + " Label: P-0002320-T01-IM3, Count: 1\n", + " Label: P-0002324-T01-IM3, Count: 1\n", + " Label: P-0002329-T01-IM3, Count: 1\n", + " Label: P-0002334-T01-IM3, Count: 1\n", + " Label: P-0002336-T01-IM3, Count: 1\n", + " Label: P-0002337-T01-IM3, Count: 1\n", + " Label: P-0002338-T01-IM3, Count: 1\n", + " Label: P-0002340-T01-IM3, Count: 1\n", + " Label: P-0002344-T01-IM3, Count: 1\n", + " Label: P-0002345-T01-IM3, Count: 1\n", + " Label: P-0002351-T01-IM3, Count: 1\n", + " Label: P-0002356-T01-IM3, Count: 1\n", + " Label: P-0002362-T01-IM3, Count: 1\n", + " Label: P-0002364-T01-IM3, Count: 1\n", + " Label: P-0002366-T01-IM3, Count: 1\n", + " Label: P-0002375-T01-IM3, Count: 1\n", + " Label: P-0002379-T01-IM3, Count: 1\n", + " Label: P-0002382-T01-IM3, Count: 1\n", + " Label: P-0002387-T01-IM3, Count: 1\n", + " Label: P-0002388-T01-IM3, Count: 1\n", + " Label: P-0002390-T01-IM3, Count: 1\n", + " Label: P-0002394-T01-IM3, Count: 1\n", + " Label: P-0002397-T01-IM3, Count: 1\n", + " Label: P-0002399-T01-IM3, Count: 1\n", + " Label: P-0002429-T01-IM3, Count: 1\n", + " Label: P-0002443-T01-IM3, Count: 1\n", + " Label: P-0002446-T01-IM3, Count: 1\n", + " Label: P-0002451-T01-IM3, Count: 1\n", + " Label: P-0002459-T01-IM3, Count: 1\n", + " Label: P-0002472-T01-IM3, Count: 1\n", + " Label: P-0002478-T01-IM3, Count: 1\n", + " Label: P-0002489-T01-IM3, Count: 1\n", + " Label: P-0002508-T01-IM3, Count: 1\n", + " Label: P-0002509-T01-IM3, Count: 1\n", + " Label: P-0002511-T01-IM3, Count: 1\n", + " Label: P-0002513-T02-IM5, Count: 1\n", + " Label: P-0002514-T01-IM3, Count: 1\n", + " Label: P-0002516-T01-IM3, Count: 1\n", + " Label: P-0002523-T01-IM3, Count: 1\n", + " Label: P-0002524-T01-IM3, Count: 1\n", + " Label: P-0002530-T01-IM3, Count: 1\n", + " Label: P-0002531-T01-IM3, Count: 1\n", + " Label: P-0002534-T01-IM3, Count: 1\n", + " Label: P-0002545-T01-IM3, Count: 1\n", + " Label: P-0002546-T01-IM3, Count: 1\n", + " Label: P-0002551-T01-IM3, Count: 1\n", + " Label: P-0002558-T01-IM3, Count: 1\n", + " Label: P-0002562-T02-IM5, Count: 1\n", + " Label: P-0002567-T01-IM3, Count: 1\n", + " Label: P-0002574-T01-IM3, Count: 1\n", + " Label: P-0002578-T01-IM3, Count: 1\n", + " Label: P-0002580-T01-IM3, Count: 1\n", + " Label: P-0002584-T01-IM3, Count: 1\n", + " Label: P-0002585-T01-IM3, Count: 1\n", + " Label: P-0002586-T01-IM3, Count: 1\n", + " Label: P-0002590-T01-IM3, Count: 1\n", + " Label: P-0002593-T01-IM3, Count: 1\n", + " Label: P-0002599-T01-IM3, Count: 1\n", + " Label: P-0002605-T01-IM3, Count: 1\n", + " Label: P-0002606-T01-IM3, Count: 1\n", + " Label: P-0002607-T01-IM3, Count: 1\n", + " Label: P-0002611-T01-IM3, Count: 1\n", + " Label: P-0002617-T02-IM5, Count: 1\n", + " Label: P-0002621-T02-IM5, Count: 1\n", + " Label: P-0002625-T01-IM3, Count: 1\n", + " Label: P-0002631-T01-IM3, Count: 1\n", + " Label: P-0002633-T01-IM3, Count: 1\n", + " Label: P-0002637-T01-IM3, Count: 1\n", + " Label: P-0002647-T01-IM3, Count: 1\n", + " Label: P-0002648-T02-IM5, Count: 1\n", + " Label: P-0002652-T01-IM3, Count: 1\n", + " Label: P-0002682-T01-IM3, Count: 1\n", + " Label: P-0002694-T02-IM3, Count: 1\n", + " Label: P-0002700-T01-IM3, Count: 1\n", + " Label: P-0002707-T01-IM3, Count: 1\n", + " Label: P-0002708-T01-IM3, Count: 1\n", + " Label: P-0002709-T01-IM3, Count: 1\n", + " Label: P-0002738-T01-IM3, Count: 1\n", + " Label: P-0002740-T01-IM3, Count: 1\n", + " Label: P-0002754-T01-IM3, Count: 1\n", + " Label: P-0002758-T01-IM3, Count: 1\n", + " Label: P-0002767-T01-IM3, Count: 1\n", + " Label: P-0002776-T01-IM3, Count: 1\n", + " Label: P-0002780-T01-IM3, Count: 1\n", + " Label: P-0002783-T01-IM3, Count: 1\n", + " Label: P-0002784-T01-IM3, Count: 1\n", + " Label: P-0002789-T01-IM3, Count: 1\n", + " Label: P-0002796-T01-IM3, Count: 1\n", + " Label: P-0002817-T01-IM3, Count: 1\n", + " Label: P-0002824-T01-IM3, Count: 1\n", + " Label: P-0002833-T01-IM3, Count: 1\n", + " Label: P-0002836-T01-IM3, Count: 1\n", + " Label: P-0002841-T01-IM3, Count: 1\n", + " Label: P-0002847-T01-IM3, Count: 1\n", + " Label: P-0002850-T01-IM3, Count: 1\n", + " Label: P-0002856-T01-IM3, Count: 1\n", + " Label: P-0002858-T01-IM3, Count: 1\n", + " Label: P-0002859-T01-IM3, Count: 1\n", + " Label: P-0002860-T01-IM3, Count: 1\n", + " Label: P-0002862-T01-IM3, Count: 1\n", + " Label: P-0002865-T01-IM3, Count: 1\n", + " Label: P-0002869-T01-IM3, Count: 1\n", + " Label: P-0002870-T01-IM3, Count: 1\n", + " Label: P-0002873-T01-IM3, Count: 1\n", + " Label: P-0002874-T01-IM3, Count: 1\n", + " Label: P-0002876-T01-IM3, Count: 1\n", + " Label: P-0002885-T01-IM3, Count: 1\n", + " Label: P-0002890-T01-IM3, Count: 1\n", + " Label: P-0002907-T01-IM3, Count: 1\n", + " Label: P-0002913-T01-IM3, Count: 1\n", + " Label: P-0002916-T02-IM5, Count: 1\n", + " Label: P-0002922-T01-IM3, Count: 1\n", + " Label: P-0002936-T01-IM3, Count: 1\n", + " Label: P-0002943-T01-IM3, Count: 1\n", + " Label: P-0002950-T01-IM3, Count: 1\n", + " Label: P-0002955-T01-IM3, Count: 1\n", + " Label: P-0002957-T01-IM3, Count: 1\n", + " Label: P-0002958-T01-IM3, Count: 1\n", + " Label: P-0002962-T01-IM3, Count: 1\n", + " Label: P-0002965-T01-IM3, Count: 1\n", + " Label: P-0002969-T01-IM3, Count: 1\n", + " Label: P-0002974-T01-IM3, Count: 1\n", + " Label: P-0002975-T02-IM5, Count: 1\n", + " Label: P-0002984-T01-IM3, Count: 1\n", + " Label: P-0002987-T01-IM3, Count: 1\n", + " Label: P-0002990-T02-IM5, Count: 1\n", + " Label: P-0002991-T01-IM3, Count: 1\n", + " Label: P-0002995-T01-IM3, Count: 1\n", + " Label: P-0002997-T01-IM3, Count: 1\n", + " Label: P-0002999-T01-IM3, Count: 1\n", + " Label: P-0003003-T01-IM3, Count: 1\n", + " Label: P-0003013-T01-IM3, Count: 1\n", + " Label: P-0003020-T01-IM3, Count: 1\n", + " Label: P-0003021-T01-IM3, Count: 1\n", + " Label: P-0003033-T02-IM5, Count: 1\n", + " Label: P-0003038-T01-IM5, Count: 1\n", + " Label: P-0003041-T01-IM5, Count: 1\n", + " Label: P-0003042-T01-IM5, Count: 1\n", + " Label: P-0003045-T01-IM3, Count: 1\n", + " Label: P-0003051-T01-IM3, Count: 1\n", + " Label: P-0003055-T01-IM3, Count: 1\n", + " Label: P-0003057-T01-IM3, Count: 1\n", + " Label: P-0003062-T01-IM3, Count: 1\n", + " Label: P-0003068-T01-IM5, Count: 1\n", + " Label: P-0003069-T01-IM5, Count: 1\n", + " Label: P-0003071-T01-IM5, Count: 1\n", + " Label: P-0003072-T01-IM5, Count: 1\n", + " Label: P-0003101-T01-IM5, Count: 1\n", + " Label: P-0003109-T01-IM5, Count: 1\n", + " Label: P-0003119-T01-IM5, Count: 1\n", + " Label: P-0003120-T01-IM5, Count: 1\n", + " Label: P-0003128-T01-IM5, Count: 1\n", + " Label: P-0003129-T01-IM5, Count: 1\n", + " Label: P-0003131-T01-IM5, Count: 1\n", + " Label: P-0003132-T01-IM5, Count: 1\n", + " Label: P-0003133-T01-IM5, Count: 1\n", + " Label: P-0003139-T02-IM5, Count: 1\n", + " Label: P-0003140-T01-IM5, Count: 1\n", + " Label: P-0003156-T01-IM5, Count: 1\n", + " Label: P-0003170-T01-IM5, Count: 1\n", + " Label: P-0003179-T02-IM5, Count: 1\n", + " Label: P-0003181-T01-IM5, Count: 1\n", + " Label: P-0003182-T01-IM5, Count: 1\n", + " Label: P-0003185-T01-IM5, Count: 1\n", + " Label: P-0003198-T02-IM5, Count: 1\n", + " Label: P-0003204-T01-IM5, Count: 1\n", + " Label: P-0003213-T01-IM5, Count: 1\n", + " Label: P-0003218-T01-IM5, Count: 1\n", + " Label: P-0003222-T01-IM5, Count: 1\n", + " Label: P-0003224-T01-IM5, Count: 1\n", + " Label: P-0003225-T01-IM5, Count: 1\n", + " Label: P-0003226-T01-IM5, Count: 1\n", + " Label: P-0003229-T01-IM5, Count: 1\n", + " Label: P-0003234-T01-IM5, Count: 1\n", + " Label: P-0003244-T01-IM5, Count: 1\n", + " Label: P-0003261-T01-IM5, Count: 1\n", + " Label: P-0003265-T01-IM5, Count: 1\n", + " Label: P-0003267-T01-IM5, Count: 1\n", + " Label: P-0003270-T02-IM5, Count: 1\n", + " Label: P-0003273-T01-IM5, Count: 1\n", + " Label: P-0003278-T01-IM5, Count: 1\n", + " Label: P-0003279-T01-IM5, Count: 1\n", + " Label: P-0003282-T01-IM5, Count: 1\n", + " Label: P-0003286-T01-IM5, Count: 1\n", + " Label: P-0003319-T01-IM5, Count: 1\n", + " Label: P-0003321-T01-IM5, Count: 1\n", + " Label: P-0003322-T01-IM5, Count: 1\n", + " Label: P-0003333-T01-IM5, Count: 1\n", + " Label: P-0003335-T01-IM5, Count: 1\n", + " Label: P-0003340-T01-IM5, Count: 1\n", + " Label: P-0003342-T01-IM5, Count: 1\n", + " Label: P-0003350-T01-IM5, Count: 1\n", + " Label: P-0003353-T01-IM5, Count: 1\n", + " Label: P-0003354-T01-IM5, Count: 1\n", + " Label: P-0003376-T02-IM5, Count: 1\n", + " Label: P-0003377-T01-IM5, Count: 1\n", + " Label: P-0003392-T01-IM5, Count: 1\n", + " Label: P-0003395-T01-IM5, Count: 1\n", + " Label: P-0003402-T01-IM5, Count: 1\n", + " Label: P-0003408-T01-IM5, Count: 1\n", + " Label: P-0003419-T02-IM5, Count: 1\n", + " Label: P-0003423-T01-IM5, Count: 1\n", + " Label: P-0003424-T01-IM5, Count: 1\n", + " Label: P-0003425-T01-IM5, Count: 1\n", + " Label: P-0003431-T01-IM5, Count: 1\n", + " Label: P-0003444-T01-IM5, Count: 1\n", + " Label: P-0003456-T01-IM5, Count: 1\n", + " Label: P-0003460-T01-IM5, Count: 1\n", + " Label: P-0003468-T01-IM5, Count: 1\n", + " Label: P-0003472-T01-IM5, Count: 1\n", + " Label: P-0003476-T01-IM5, Count: 1\n", + " Label: P-0003479-T01-IM5, Count: 1\n", + " Label: P-0003480-T01-IM5, Count: 1\n", + " Label: P-0003481-T01-IM5, Count: 1\n", + " Label: P-0003488-T01-IM5, Count: 1\n", + " Label: P-0003502-T01-IM5, Count: 1\n", + " Label: P-0003507-T01-IM5, Count: 1\n", + " Label: P-0003511-T01-IM5, Count: 1\n", + " Label: P-0003523-T01-IM5, Count: 1\n", + " Label: P-0003527-T01-IM5, Count: 1\n", + " Label: P-0003529-T01-IM5, Count: 1\n", + " Label: P-0003535-T01-IM5, Count: 1\n", + " Label: P-0003538-T02-IM5, Count: 1\n", + " Label: P-0003541-T01-IM5, Count: 1\n", + " Label: P-0003553-T01-IM5, Count: 1\n", + " Label: P-0003556-T01-IM5, Count: 1\n", + " Label: P-0003557-T01-IM5, Count: 1\n", + " Label: P-0003558-T01-IM5, Count: 1\n", + " Label: P-0003562-T01-IM5, Count: 1\n", + " Label: P-0003567-T01-IM5, Count: 1\n", + " Label: P-0003570-T01-IM5, Count: 1\n", + " Label: P-0003580-T01-IM5, Count: 1\n", + " Label: P-0003581-T01-IM5, Count: 1\n", + " Label: P-0003586-T01-IM5, Count: 1\n", + " Label: P-0003587-T01-IM5, Count: 1\n", + " Label: P-0003592-T01-IM5, Count: 1\n", + " Label: P-0003599-T01-IM5, Count: 1\n", + " Label: P-0003600-T01-IM5, Count: 1\n", + " Label: P-0003616-T02-IM5, Count: 1\n", + " Label: P-0003619-T01-IM5, Count: 1\n", + " Label: P-0003620-T01-IM5, Count: 1\n", + " Label: P-0003623-T01-IM5, Count: 1\n", + " Label: P-0003624-T01-IM5, Count: 1\n", + " Label: P-0003625-T01-IM5, Count: 1\n", + " Label: P-0003627-T01-IM5, Count: 1\n", + " Label: P-0003632-T01-IM5, Count: 1\n", + " Label: P-0003635-T01-IM5, Count: 1\n", + " Label: P-0003637-T01-IM5, Count: 1\n", + " Label: P-0003644-T01-IM5, Count: 1\n", + " Label: P-0003647-T01-IM5, Count: 1\n", + " Label: P-0003654-T01-IM5, Count: 1\n", + " Label: P-0003656-T02-IM5, Count: 1\n", + " Label: P-0003665-T01-IM5, Count: 1\n", + " Label: P-0003676-T01-IM5, Count: 1\n", + " Label: P-0003678-T01-IM5, Count: 1\n", + " Label: P-0003681-T01-IM5, Count: 1\n", + " Label: P-0003694-T01-IM5, Count: 1\n", + " Label: P-0003702-T02-IM5, Count: 1\n", + " Label: P-0003714-T01-IM5, Count: 1\n", + " Label: P-0003716-T01-IM5, Count: 1\n", + " Label: P-0003719-T01-IM5, Count: 1\n", + " Label: P-0003727-T01-IM5, Count: 1\n", + " Label: P-0003732-T01-IM5, Count: 1\n", + " Label: P-0003740-T01-IM5, Count: 1\n", + " Label: P-0003742-T01-IM5, Count: 1\n", + " Label: P-0003750-T01-IM5, Count: 1\n", + " Label: P-0003751-T01-IM5, Count: 1\n", + " Label: P-0003754-T01-IM5, Count: 1\n", + " Label: P-0003758-T01-IM5, Count: 1\n", + " Label: P-0003761-T01-IM5, Count: 1\n", + " Label: P-0003778-T01-IM5, Count: 1\n", + " Label: P-0003779-T01-IM5, Count: 1\n", + " Label: P-0003783-T01-IM5, Count: 1\n", + " Label: P-0003785-T01-IM5, Count: 1\n", + " Label: P-0003788-T01-IM5, Count: 1\n", + " Label: P-0003790-T01-IM5, Count: 1\n", + " Label: P-0003794-T01-IM5, Count: 1\n", + " Label: P-0003799-T02-IM5, Count: 1\n", + " Label: P-0003809-T01-IM5, Count: 1\n", + " Label: P-0003811-T01-IM5, Count: 1\n", + " Label: P-0003816-T01-IM5, Count: 1\n", + " Label: P-0003819-T01-IM5, Count: 1\n", + " Label: P-0003820-T01-IM5, Count: 1\n", + " Label: P-0003822-T02-IM5, Count: 1\n", + " Label: P-0003823-T01-IM5, Count: 1\n", + " Label: P-0003824-T01-IM5, Count: 1\n", + " Label: P-0003827-T01-IM5, Count: 1\n", + " Label: P-0003832-T01-IM5, Count: 1\n", + " Label: P-0003836-T01-IM5, Count: 1\n", + " Label: P-0003840-T01-IM5, Count: 1\n", + " Label: P-0003847-T01-IM5, Count: 1\n", + " Label: P-0003850-T01-IM5, Count: 1\n", + " Label: P-0003853-T01-IM5, Count: 1\n", + " Label: P-0003854-T02-IM5, Count: 1\n", + " Label: P-0003856-T01-IM5, Count: 1\n", + " Label: P-0003863-T01-IM5, Count: 1\n", + " Label: P-0003864-T01-IM5, Count: 1\n", + " Label: P-0003865-T01-IM5, Count: 1\n", + " Label: P-0003868-T01-IM5, Count: 1\n", + " Label: P-0003869-T01-IM5, Count: 1\n", + " Label: P-0003871-T01-IM5, Count: 1\n", + " Label: P-0003872-T01-IM5, Count: 1\n", + " Label: P-0003878-T01-IM5, Count: 1\n", + " Label: P-0003879-T01-IM5, Count: 1\n", + " Label: P-0003882-T01-IM5, Count: 1\n", + " Label: P-0003899-T01-IM5, Count: 1\n", + " Label: P-0003903-T02-IM5, Count: 1\n", + " Label: P-0003913-T01-IM3, Count: 1\n", + " Label: P-0003916-T01-IM3, Count: 1\n", + " Label: P-0003918-T01-IM3, Count: 1\n", + " Label: P-0003925-T01-IM3, Count: 1\n", + " Label: P-0003935-T01-IM3, Count: 1\n", + " Label: P-0003937-T02-IM5, Count: 1\n", + " Label: P-0003941-T01-IM3, Count: 1\n", + " Label: P-0003942-T01-IM3, Count: 1\n", + " Label: P-0003943-T01-IM3, Count: 1\n", + " Label: P-0003945-T01-IM3, Count: 1\n", + " Label: P-0003954-T01-IM3, Count: 1\n", + " Label: P-0003961-T01-IM3, Count: 1\n", + " Label: P-0003964-T01-IM3, Count: 1\n", + " Label: P-0003967-T01-IM5, Count: 1\n", + " Label: P-0003970-T01-IM5, Count: 1\n", + " Label: P-0003978-T01-IM3, Count: 1\n", + " Label: P-0003980-T01-IM3, Count: 1\n", + " Label: P-0004006-T01-IM3, Count: 1\n", + " Label: P-0004023-T01-IM3, Count: 1\n", + " Label: P-0004035-T01-IM5, Count: 1\n", + " Label: P-0004045-T01-IM3, Count: 1\n", + " Label: P-0004050-T01-IM3, Count: 1\n", + " Label: P-0004054-T01-IM5, Count: 1\n", + " Label: P-0004056-T01-IM5, Count: 1\n", + " Label: P-0004057-T01-IM5, Count: 1\n", + " Label: P-0004058-T01-IM5, Count: 1\n", + " Label: P-0004061-T02-IM5, Count: 1\n", + " Label: P-0004064-T01-IM5, Count: 1\n", + " Label: P-0004065-T01-IM5, Count: 1\n", + " Label: P-0004070-T02-IM5, Count: 1\n", + " Label: P-0004077-T01-IM5, Count: 1\n", + " Label: P-0004085-T01-IM5, Count: 1\n", + " Label: P-0004087-T01-IM5, Count: 1\n", + " Label: P-0004089-T01-IM5, Count: 1\n", + " Label: P-0004090-T01-IM5, Count: 1\n", + " Label: P-0004091-T01-IM5, Count: 1\n", + " Label: P-0004092-T01-IM5, Count: 1\n", + " Label: P-0004102-T01-IM5, Count: 1\n", + " Label: P-0004103-T01-IM5, Count: 1\n", + " Label: P-0004114-T01-IM5, Count: 1\n", + " Label: P-0004115-T01-IM5, Count: 1\n", + " Label: P-0004152-T01-IM5, Count: 1\n", + " Label: P-0004168-T01-IM5, Count: 1\n", + " Label: P-0004169-T01-IM5, Count: 1\n", + " Label: P-0004180-T01-IM5, Count: 1\n", + " Label: P-0004181-T01-IM5, Count: 1\n", + " Label: P-0004189-T01-IM5, Count: 1\n", + " Label: P-0004196-T01-IM5, Count: 1\n", + " Label: P-0004203-T01-IM5, Count: 1\n", + " Label: P-0004204-T01-IM5, Count: 1\n", + " Label: P-0004205-T01-IM5, Count: 1\n", + " Label: P-0004208-T01-IM5, Count: 1\n", + " Label: P-0004209-T01-IM5, Count: 1\n", + " Label: P-0004210-T01-IM5, Count: 1\n", + " Label: P-0004212-T01-IM5, Count: 1\n", + " Label: P-0004213-T01-IM5, Count: 1\n", + " Label: P-0004215-T01-IM5, Count: 1\n", + " Label: P-0004216-T01-IM5, Count: 1\n", + " Label: P-0004224-T01-IM5, Count: 1\n", + " Label: P-0004230-T01-IM5, Count: 1\n", + " Label: P-0004233-T01-IM5, Count: 1\n", + " Label: P-0004237-T01-IM5, Count: 1\n", + " Label: P-0004238-T01-IM5, Count: 1\n", + " Label: P-0004242-T01-IM5, Count: 1\n", + " Label: P-0004243-T01-IM5, Count: 1\n", + " Label: P-0004259-T01-IM5, Count: 1\n", + " Label: P-0004265-T01-IM5, Count: 1\n", + " Label: P-0004277-T01-IM5, Count: 1\n", + " Label: P-0004278-T01-IM5, Count: 1\n", + " Label: P-0004288-T01-IM5, Count: 1\n", + " Label: P-0004293-T01-IM5, Count: 1\n", + " Label: P-0004294-T01-IM5, Count: 1\n", + " Label: P-0004295-T01-IM5, Count: 1\n", + " Label: P-0004298-T01-IM5, Count: 1\n", + " Label: P-0004309-T01-IM5, Count: 1\n", + " Label: P-0004310-T01-IM5, Count: 1\n", + " Label: P-0004312-T01-IM5, Count: 1\n", + " Label: P-0004314-T01-IM5, Count: 1\n", + " Label: P-0004327-T01-IM5, Count: 1\n", + " Label: P-0004328-T02-IM5, Count: 1\n", + " Label: P-0004338-T01-IM5, Count: 1\n", + " Label: P-0004347-T01-IM5, Count: 1\n", + " Label: P-0004349-T01-IM5, Count: 1\n", + " Label: P-0004354-T01-IM5, Count: 1\n", + " Label: P-0004355-T01-IM5, Count: 1\n", + " Label: P-0004359-T01-IM5, Count: 1\n", + " Label: P-0004375-T01-IM5, Count: 1\n", + " Label: P-0004382-T01-IM5, Count: 1\n", + " Label: P-0004386-T01-IM5, Count: 1\n", + " Label: P-0004387-T01-IM5, Count: 1\n", + " Label: P-0004393-T01-IM5, Count: 1\n", + " Label: P-0004394-T01-IM5, Count: 1\n", + " Label: P-0004395-T01-IM5, Count: 1\n", + " Label: P-0004399-T01-IM5, Count: 1\n", + " Label: P-0004410-T01-IM5, Count: 1\n", + " Label: P-0004421-T01-IM5, Count: 1\n", + " Label: P-0004423-T01-IM5, Count: 1\n", + " Label: P-0004424-T01-IM5, Count: 1\n", + " Label: P-0004425-T01-IM5, Count: 1\n", + " Label: P-0004427-T01-IM5, Count: 1\n", + " Label: P-0004432-T01-IM5, Count: 1\n", + " Label: P-0004433-T01-IM5, Count: 1\n", + " Label: P-0004434-T01-IM5, Count: 1\n", + " Label: P-0004436-T01-IM5, Count: 1\n", + " Label: P-0004438-T01-IM5, Count: 1\n", + " Label: P-0004448-T01-IM5, Count: 1\n", + " Label: P-0004455-T01-IM5, Count: 1\n", + " Label: P-0004459-T01-IM5, Count: 1\n", + " Label: P-0004462-T01-IM5, Count: 1\n", + " Label: P-0004463-T01-IM5, Count: 1\n", + " Label: P-0004466-T01-IM5, Count: 1\n", + " Label: P-0004472-T01-IM5, Count: 1\n", + " Label: P-0004476-T01-IM5, Count: 1\n", + " Label: P-0004482-T01-IM5, Count: 1\n", + " Label: P-0004483-T01-IM5, Count: 1\n", + " Label: P-0004491-T01-IM5, Count: 1\n", + " Label: P-0004496-T01-IM5, Count: 1\n", + " Label: P-0004499-T01-IM5, Count: 1\n", + " Label: P-0004510-T01-IM5, Count: 1\n", + " Label: P-0004517-T01-IM5, Count: 1\n", + " Label: P-0004519-T01-IM5, Count: 1\n", + " Label: P-0004531-T01-IM5, Count: 1\n", + " Label: P-0004537-T01-IM5, Count: 1\n", + " Label: P-0004540-T01-IM5, Count: 1\n", + " Label: P-0004548-T01-IM5, Count: 1\n", + " Label: P-0004550-T01-IM5, Count: 1\n", + " Label: P-0004558-T01-IM5, Count: 1\n", + " Label: P-0004562-T01-IM5, Count: 1\n", + " Label: P-0004564-T01-IM5, Count: 1\n", + " Label: P-0004570-T01-IM5, Count: 1\n", + " Label: P-0004578-T01-IM5, Count: 1\n", + " Label: P-0004580-T01-IM5, Count: 1\n", + " Label: P-0004589-T01-IM5, Count: 1\n", + " Label: P-0004591-T01-IM5, Count: 1\n", + " Label: P-0004593-T01-IM5, Count: 1\n", + " Label: P-0004595-T01-IM5, Count: 1\n", + " Label: P-0004596-T01-IM5, Count: 1\n", + " Label: P-0004600-T01-IM5, Count: 1\n", + " Label: P-0004603-T01-IM5, Count: 1\n", + " Label: P-0004607-T03-IM5, Count: 1\n", + " Label: P-0004609-T01-IM5, Count: 1\n", + " Label: P-0004611-T01-IM5, Count: 1\n", + " Label: P-0004613-T01-IM5, Count: 1\n", + " Label: P-0004615-T01-IM5, Count: 1\n", + " Label: P-0004627-T01-IM5, Count: 1\n", + " Label: P-0004646-T01-IM5, Count: 1\n", + " Label: P-0004654-T01-IM5, Count: 1\n", + " Label: P-0004665-T01-IM5, Count: 1\n", + " Label: P-0004668-T01-IM5, Count: 1\n", + " Label: P-0004681-T01-IM5, Count: 1\n", + " Label: P-0004691-T01-IM5, Count: 1\n", + " Label: P-0004694-T01-IM5, Count: 1\n", + " Label: P-0004709-T01-IM5, Count: 1\n", + " Label: P-0004714-T01-IM5, Count: 1\n", + " Label: P-0004718-T01-IM5, Count: 1\n", + " Label: P-0004721-T01-IM5, Count: 1\n", + " Label: P-0004731-T01-IM5, Count: 1\n", + " Label: P-0004739-T01-IM5, Count: 1\n", + " Label: P-0004743-T01-IM5, Count: 1\n", + " Label: P-0004753-T01-IM5, Count: 1\n", + " Label: P-0004755-T01-IM5, Count: 1\n", + " Label: P-0004758-T01-IM5, Count: 1\n", + " Label: P-0004759-T01-IM5, Count: 1\n", + " Label: P-0004764-T01-IM5, Count: 1\n", + " Label: P-0004765-T01-IM5, Count: 1\n", + " Label: P-0004787-T01-IM5, Count: 1\n", + " Label: P-0004793-T01-IM5, Count: 1\n", + " Label: P-0004802-T01-IM5, Count: 1\n", + " Label: P-0004804-T01-IM5, Count: 1\n", + " Label: P-0004807-T01-IM5, Count: 1\n", + " Label: P-0004808-T01-IM5, Count: 1\n", + " Label: P-0004811-T01-IM5, Count: 1\n", + " Label: P-0004826-T01-IM5, Count: 1\n", + " Label: P-0004835-T01-IM5, Count: 1\n", + " Label: P-0004837-T01-IM5, Count: 1\n", + " Label: P-0004841-T01-IM5, Count: 1\n", + " Label: P-0004846-T01-IM5, Count: 1\n", + " Label: P-0004847-T01-IM5, Count: 1\n", + " Label: P-0004850-T01-IM5, Count: 1\n", + " Label: P-0004853-T01-IM5, Count: 1\n", + " Label: P-0004856-T01-IM5, Count: 1\n", + " Label: P-0004861-T01-IM5, Count: 1\n", + " Label: P-0004869-T01-IM5, Count: 1\n", + " Label: P-0004889-T01-IM5, Count: 1\n", + " Label: P-0004890-T01-IM5, Count: 1\n", + " Label: P-0004895-T01-IM5, Count: 1\n", + " Label: P-0004896-T01-IM5, Count: 1\n", + " Label: P-0004903-T01-IM5, Count: 1\n", + " Label: P-0004909-T01-IM5, Count: 1\n", + " Label: P-0004910-T01-IM5, Count: 1\n", + " Label: P-0004911-T01-IM5, Count: 1\n", + " Label: P-0004912-T01-IM5, Count: 1\n", + " Label: P-0004914-T01-IM5, Count: 1\n", + " Label: P-0004919-T01-IM5, Count: 1\n", + " Label: P-0004920-T01-IM5, Count: 1\n", + " Label: P-0004929-T01-IM5, Count: 1\n", + " Label: P-0004933-T01-IM5, Count: 1\n", + " Label: P-0004941-T01-IM5, Count: 1\n", + " Label: P-0004942-T01-IM5, Count: 1\n", + " Label: P-0004944-T02-IM5, Count: 1\n", + " Label: P-0004949-T02-IM5, Count: 1\n", + " Label: P-0004952-T01-IM5, Count: 1\n", + " Label: P-0004963-T01-IM5, Count: 1\n", + " Label: P-0004973-T01-IM5, Count: 1\n", + " Label: P-0004975-T01-IM5, Count: 1\n", + " Label: P-0004981-T01-IM5, Count: 1\n", + " Label: P-0004982-T01-IM5, Count: 1\n", + " Label: P-0004987-T01-IM5, Count: 1\n", + " Label: P-0004991-T01-IM5, Count: 1\n", + " Label: P-0004995-T01-IM5, Count: 1\n", + " Label: P-0004996-T02-IM5, Count: 1\n", + " Label: P-0005002-T01-IM5, Count: 1\n", + " Label: P-0005005-T01-IM5, Count: 1\n", + " Label: P-0005010-T01-IM5, Count: 1\n", + " Label: P-0005012-T01-IM5, Count: 1\n", + " Label: P-0005014-T01-IM5, Count: 1\n", + " Label: P-0005020-T01-IM5, Count: 1\n", + " Label: P-0005024-T01-IM5, Count: 1\n", + " Label: P-0005034-T01-IM5, Count: 1\n", + " Label: P-0005036-T01-IM5, Count: 1\n", + " Label: P-0005037-T01-IM5, Count: 1\n", + " Label: P-0005039-T01-IM5, Count: 1\n", + " Label: P-0005045-T01-IM5, Count: 1\n", + " Label: P-0005051-T01-IM5, Count: 1\n", + " Label: P-0005063-T01-IM5, Count: 1\n", + " Label: P-0005065-T03-IM5, Count: 1\n", + " Label: P-0005070-T01-IM5, Count: 1\n", + " Label: P-0005076-T01-IM5, Count: 1\n", + " Label: P-0005079-T01-IM5, Count: 1\n", + " Label: P-0005083-T01-IM5, Count: 1\n", + " Label: P-0005085-T01-IM5, Count: 1\n", + " Label: P-0005104-T01-IM5, Count: 1\n", + " Label: P-0005109-T01-IM5, Count: 1\n", + " Label: P-0005113-T01-IM5, Count: 1\n", + " Label: P-0005115-T01-IM5, Count: 1\n", + " Label: P-0005129-T01-IM5, Count: 1\n", + " Label: P-0005131-T01-IM5, Count: 1\n", + " Label: P-0005141-T01-IM5, Count: 1\n", + " Label: P-0005142-T01-IM5, Count: 1\n", + " Label: P-0005143-T01-IM5, Count: 1\n", + " Label: P-0005144-T01-IM5, Count: 1\n", + " Label: P-0005146-T01-IM5, Count: 1\n", + " Label: P-0005152-T01-IM5, Count: 1\n", + " Label: P-0005153-T01-IM5, Count: 1\n", + " Label: P-0005156-T01-IM5, Count: 1\n", + " Label: P-0005165-T01-IM5, Count: 1\n", + " Label: P-0005176-T01-IM5, Count: 1\n", + " Label: P-0005178-T01-IM5, Count: 1\n", + " Label: P-0005190-T01-IM5, Count: 1\n", + " Label: P-0005196-T01-IM5, Count: 1\n", + " Label: P-0005205-T01-IM5, Count: 1\n", + " Label: P-0005213-T01-IM5, Count: 1\n", + " Label: P-0005216-T01-IM5, Count: 1\n", + " Label: P-0005219-T01-IM5, Count: 1\n", + " Label: P-0005220-T01-IM5, Count: 1\n", + " Label: P-0005221-T01-IM5, Count: 1\n", + " Label: P-0005226-T01-IM5, Count: 1\n", + " Label: P-0005232-T01-IM5, Count: 1\n", + " Label: P-0005235-T02-IM5, Count: 1\n", + " Label: P-0005243-T01-IM5, Count: 1\n", + " Label: P-0005254-T01-IM5, Count: 1\n", + " Label: P-0005257-T01-IM5, Count: 1\n", + " Label: P-0005261-T01-IM5, Count: 1\n", + " Label: P-0005263-T01-IM5, Count: 1\n", + " Label: P-0005264-T01-IM5, Count: 1\n", + " Label: P-0005268-T01-IM5, Count: 1\n", + " Label: P-0005273-T01-IM5, Count: 1\n", + " Label: P-0005284-T01-IM5, Count: 1\n", + " Label: P-0005315-T01-IM5, Count: 1\n", + " Label: P-0005320-T01-IM5, Count: 1\n", + " Label: P-0005334-T01-IM5, Count: 1\n", + " Label: P-0005335-T01-IM5, Count: 1\n", + " Label: P-0005342-T01-IM5, Count: 1\n", + " Label: P-0005352-T01-IM5, Count: 1\n", + " Label: P-0005353-T01-IM5, Count: 1\n", + " Label: P-0005355-T01-IM5, Count: 1\n", + " Label: P-0005378-T01-IM5, Count: 1\n", + " Label: P-0005380-T01-IM5, Count: 1\n", + " Label: P-0005395-T01-IM5, Count: 1\n", + " Label: P-0005399-T01-IM5, Count: 1\n", + " Label: P-0005416-T01-IM5, Count: 1\n", + " Label: P-0005419-T01-IM5, Count: 1\n", + " Label: P-0005428-T01-IM5, Count: 1\n", + " Label: P-0005429-T01-IM5, Count: 1\n", + " Label: P-0005445-T01-IM5, Count: 1\n", + " Label: P-0005447-T01-IM5, Count: 1\n", + " Label: P-0005452-T01-IM5, Count: 1\n", + " Label: P-0005454-T01-IM5, Count: 1\n", + " Label: P-0005460-T01-IM5, Count: 1\n", + " Label: P-0005461-T02-IM5, Count: 1\n", + " Label: P-0005467-T01-IM5, Count: 1\n", + " Label: P-0005469-T01-IM5, Count: 1\n", + " Label: P-0005471-T01-IM5, Count: 1\n", + " Label: P-0005472-T01-IM5, Count: 1\n", + " Label: P-0005476-T01-IM5, Count: 1\n", + " Label: P-0005477-T01-IM5, Count: 1\n", + " Label: P-0005479-T01-IM5, Count: 1\n", + " Label: P-0005483-T01-IM5, Count: 1\n", + " Label: P-0005492-T01-IM5, Count: 1\n", + " Label: P-0005495-T01-IM5, Count: 1\n", + " Label: P-0005496-T01-IM5, Count: 1\n", + " Label: P-0005497-T01-IM5, Count: 1\n", + " Label: P-0005499-T01-IM5, Count: 1\n", + " Label: P-0005533-T01-IM5, Count: 1\n", + " Label: P-0005535-T01-IM5, Count: 1\n", + " Label: P-0005539-T01-IM5, Count: 1\n", + " Label: P-0005542-T01-IM5, Count: 1\n", + " Label: P-0005546-T01-IM5, Count: 1\n", + " Label: P-0005547-T02-IM5, Count: 1\n", + " Label: P-0005554-T01-IM5, Count: 1\n", + " Label: P-0005555-T01-IM5, Count: 1\n", + " Label: P-0005566-T01-IM5, Count: 1\n", + " Label: P-0005567-T01-IM5, Count: 1\n", + " Label: P-0005573-T01-IM5, Count: 1\n", + " Label: P-0005575-T01-IM5, Count: 1\n", + " Label: P-0005582-T01-IM5, Count: 1\n", + " Label: P-0005600-T02-IM5, Count: 1\n", + " Label: P-0005602-T02-IM5, Count: 1\n", + " Label: P-0005604-T01-IM5, Count: 1\n", + " Label: P-0005606-T01-IM5, Count: 1\n", + " Label: P-0005610-T01-IM5, Count: 1\n", + " Label: P-0005613-T01-IM5, Count: 1\n", + " Label: P-0005615-T02-IM5, Count: 1\n", + " Label: P-0005627-T02-IM5, Count: 1\n", + " Label: P-0005631-T01-IM5, Count: 1\n", + " Label: P-0005636-T01-IM5, Count: 1\n", + " Label: P-0005639-T01-IM5, Count: 1\n", + " Label: P-0005640-T01-IM5, Count: 1\n", + " Label: P-0005645-T01-IM5, Count: 1\n", + " Label: P-0005652-T01-IM5, Count: 1\n", + " Label: P-0005681-T01-IM5, Count: 1\n", + " Label: P-0005696-T01-IM5, Count: 1\n", + " Label: P-0005697-T03-IM5, Count: 1\n", + " Label: P-0005707-T01-IM5, Count: 1\n", + " Label: P-0005711-T01-IM5, Count: 1\n", + " Label: P-0005712-T01-IM5, Count: 1\n", + " Label: P-0005726-T02-IM5, Count: 1\n", + " Label: P-0005731-T01-IM5, Count: 1\n", + " Label: P-0005732-T01-IM5, Count: 1\n", + " Label: P-0005761-T01-IM5, Count: 1\n", + " Label: P-0005763-T01-IM5, Count: 1\n", + " Label: P-0005768-T02-IM5, Count: 1\n", + " Label: P-0005769-T01-IM5, Count: 1\n", + " Label: P-0005770-T02-IM5, Count: 1\n", + " Label: P-0005771-T02-IM5, Count: 1\n", + " Label: P-0005778-T01-IM5, Count: 1\n", + " Label: P-0005781-T01-IM5, Count: 1\n", + " Label: P-0005785-T01-IM5, Count: 1\n", + " Label: P-0005790-T01-IM5, Count: 1\n", + " Label: P-0005793-T01-IM5, Count: 1\n", + " Label: P-0005802-T01-IM5, Count: 1\n", + " Label: P-0005805-T01-IM5, Count: 1\n", + " Label: P-0005806-T01-IM5, Count: 1\n", + " Label: P-0005813-T01-IM5, Count: 1\n", + " Label: P-0005816-T01-IM5, Count: 1\n", + " Label: P-0005836-T01-IM5, Count: 1\n", + " Label: P-0005843-T01-IM5, Count: 1\n", + " Label: P-0005849-T01-IM5, Count: 1\n", + " Label: P-0005852-T02-IM5, Count: 1\n", + " Label: P-0005856-T01-IM5, Count: 1\n", + " Label: P-0005859-T01-IM5, Count: 1\n", + " Label: P-0005868-T02-IM5, Count: 1\n", + " Label: P-0005870-T01-IM5, Count: 1\n", + " Label: P-0005874-T01-IM5, Count: 1\n", + " Label: P-0005875-T02-IM5, Count: 1\n", + " Label: P-0005877-T01-IM5, Count: 1\n", + " Label: P-0005879-T01-IM5, Count: 1\n", + " Label: P-0005886-T01-IM5, Count: 1\n", + " Label: P-0005895-T01-IM5, Count: 1\n", + " Label: P-0005902-T01-IM5, Count: 1\n", + " Label: P-0005912-T01-IM5, Count: 1\n", + " Label: P-0005915-T01-IM5, Count: 1\n", + " Label: P-0005917-T01-IM5, Count: 1\n", + " Label: P-0005929-T01-IM5, Count: 1\n", + " Label: P-0005931-T01-IM5, Count: 1\n", + " Label: P-0005932-T01-IM5, Count: 1\n", + " Label: P-0005933-T01-IM5, Count: 1\n", + " Label: P-0005937-T01-IM5, Count: 1\n", + " Label: P-0005940-T01-IM5, Count: 1\n", + " Label: P-0005948-T01-IM5, Count: 1\n", + " Label: P-0005950-T01-IM5, Count: 1\n", + " Label: P-0005953-T01-IM5, Count: 1\n", + " Label: P-0005954-T01-IM5, Count: 1\n", + " Label: P-0005956-T01-IM5, Count: 1\n", + " Label: P-0005963-T01-IM5, Count: 1\n", + " Label: P-0005966-T01-IM5, Count: 1\n", + " Label: P-0005976-T01-IM5, Count: 1\n", + " Label: P-0005980-T01-IM5, Count: 1\n", + " Label: P-0005981-T01-IM5, Count: 1\n", + " Label: P-0005985-T01-IM5, Count: 1\n", + " Label: P-0005997-T01-IM5, Count: 1\n", + " Label: P-0006013-T01-IM5, Count: 1\n", + " Label: P-0006022-T01-IM5, Count: 1\n", + " Label: P-0006034-T01-IM5, Count: 1\n", + " Label: P-0006044-T01-IM5, Count: 1\n", + " Label: P-0006045-T02-IM5, Count: 1\n", + " Label: P-0006046-T01-IM5, Count: 1\n", + " Label: P-0006051-T01-IM5, Count: 1\n", + " Label: P-0006053-T01-IM5, Count: 1\n", + " Label: P-0006054-T01-IM5, Count: 1\n", + " Label: P-0006055-T01-IM5, Count: 1\n", + " Label: P-0006063-T01-IM5, Count: 1\n", + " Label: P-0006068-T01-IM5, Count: 1\n", + " Label: P-0006071-T01-IM5, Count: 1\n", + " Label: P-0006085-T01-IM5, Count: 1\n", + " Label: P-0006086-T01-IM5, Count: 1\n", + " Label: P-0006090-T01-IM5, Count: 1\n", + " Label: P-0006095-T01-IM5, Count: 1\n", + " Label: P-0006115-T01-IM5, Count: 1\n", + " Label: P-0006126-T01-IM5, Count: 1\n", + " Label: P-0006127-T01-IM5, Count: 1\n", + " Label: P-0006128-T01-IM5, Count: 1\n", + " Label: P-0006134-T01-IM5, Count: 1\n", + " Label: P-0006137-T01-IM5, Count: 1\n", + " Label: P-0006139-T01-IM5, Count: 1\n", + " Label: P-0006142-T01-IM5, Count: 1\n", + " Label: P-0006151-T01-IM5, Count: 1\n", + " Label: P-0006153-T01-IM5, Count: 1\n", + " Label: P-0006155-T02-IM5, Count: 1\n", + " Label: P-0006156-T01-IM5, Count: 1\n", + " Label: P-0006161-T02-IM5, Count: 1\n", + " Label: P-0006162-T01-IM5, Count: 1\n", + " Label: P-0006169-T01-IM5, Count: 1\n", + " Label: P-0006171-T01-IM5, Count: 1\n", + " Label: P-0006173-T01-IM5, Count: 1\n", + " Label: P-0006174-T01-IM5, Count: 1\n", + " Label: P-0006175-T01-IM5, Count: 1\n", + " Label: P-0006177-T01-IM5, Count: 1\n", + " Label: P-0006182-T01-IM5, Count: 1\n", + " Label: P-0006189-T01-IM5, Count: 1\n", + " Label: P-0006192-T01-IM5, Count: 1\n", + " Label: P-0006195-T01-IM5, Count: 1\n", + " Label: P-0006203-T01-IM5, Count: 1\n", + " Label: P-0006221-T02-IM5, Count: 1\n", + " Label: P-0006227-T01-IM5, Count: 1\n", + " Label: P-0006248-T01-IM5, Count: 1\n", + " Label: P-0006253-T01-IM5, Count: 1\n", + " Label: P-0006262-T01-IM5, Count: 1\n", + " Label: P-0006267-T01-IM5, Count: 1\n", + " Label: P-0006268-T01-IM5, Count: 1\n", + " Label: P-0006273-T01-IM5, Count: 1\n", + " Label: P-0006277-T01-IM5, Count: 1\n", + " Label: P-0006280-T01-IM5, Count: 1\n", + " Label: P-0006281-T01-IM5, Count: 1\n", + " Label: P-0006282-T02-IM5, Count: 1\n", + " Label: P-0006303-T01-IM5, Count: 1\n", + " Label: P-0006310-T01-IM5, Count: 1\n", + " Label: P-0006321-T01-IM5, Count: 1\n", + " Label: P-0006331-T01-IM5, Count: 1\n", + " Label: P-0006339-T01-IM5, Count: 1\n", + " Label: P-0006348-T01-IM5, Count: 1\n", + " Label: P-0006351-T01-IM5, Count: 1\n", + " Label: P-0006358-T01-IM5, Count: 1\n", + " Label: P-0006361-T01-IM5, Count: 1\n", + " Label: P-0006376-T01-IM5, Count: 1\n", + " Label: P-0006388-T01-IM5, Count: 1\n", + " Label: P-0006399-T01-IM5, Count: 1\n", + " Label: P-0006404-T01-IM5, Count: 1\n", + " Label: P-0006408-T01-IM5, Count: 1\n", + " Label: P-0006411-T01-IM5, Count: 1\n", + " Label: P-0006412-T01-IM5, Count: 1\n", + " Label: P-0006416-T01-IM5, Count: 1\n", + " Label: P-0006431-T01-IM5, Count: 1\n", + " Label: P-0006433-T01-IM5, Count: 1\n", + " Label: P-0006442-T01-IM5, Count: 1\n", + " Label: P-0006455-T01-IM5, Count: 1\n", + " Label: P-0006458-T01-IM5, Count: 1\n", + " Label: P-0006461-T01-IM5, Count: 1\n", + " Label: P-0006462-T01-IM5, Count: 1\n", + " Label: P-0006463-T01-IM5, Count: 1\n", + " Label: P-0006465-T01-IM5, Count: 1\n", + " Label: P-0006471-T01-IM5, Count: 1\n", + " Label: P-0006476-T01-IM5, Count: 1\n", + " Label: P-0006479-T01-IM5, Count: 1\n", + " Label: P-0006482-T01-IM5, Count: 1\n", + " Label: P-0006485-T01-IM5, Count: 1\n", + " Label: P-0006494-T01-IM5, Count: 1\n", + " Label: P-0006500-T01-IM5, Count: 1\n", + " Label: P-0006508-T01-IM5, Count: 1\n", + " Label: P-0006511-T01-IM5, Count: 1\n", + " Label: P-0006515-T01-IM5, Count: 1\n", + " Label: P-0006535-T01-IM5, Count: 1\n", + " Label: P-0006543-T01-IM5, Count: 1\n", + " Label: P-0006545-T01-IM5, Count: 1\n", + " Label: P-0006550-T01-IM5, Count: 1\n", + " Label: P-0006554-T01-IM5, Count: 1\n", + " Label: P-0006555-T01-IM5, Count: 1\n", + " Label: P-0006558-T01-IM5, Count: 1\n", + " Label: P-0006561-T02-IM5, Count: 1\n", + " Label: P-0006580-T01-IM5, Count: 1\n", + " Label: P-0006584-T01-IM5, Count: 1\n", + " Label: P-0006586-T01-IM5, Count: 1\n", + " Label: P-0006595-T01-IM5, Count: 1\n", + " Label: P-0006596-T01-IM5, Count: 1\n", + " Label: P-0006601-T01-IM5, Count: 1\n", + " Label: P-0006603-T01-IM5, Count: 1\n", + " Label: P-0006618-T01-IM5, Count: 1\n", + " Label: P-0006621-T01-IM5, Count: 1\n", + " Label: P-0006622-T01-IM5, Count: 1\n", + " Label: P-0006628-T01-IM5, Count: 1\n", + " Label: P-0006631-T02-IM5, Count: 1\n", + " Label: P-0006635-T01-IM5, Count: 1\n", + " Label: P-0006637-T01-IM5, Count: 1\n", + " Label: P-0006640-T01-IM5, Count: 1\n", + " Label: P-0006645-T01-IM5, Count: 1\n", + " Label: P-0006653-T01-IM5, Count: 1\n", + " Label: P-0006668-T01-IM5, Count: 1\n", + " Label: P-0006676-T01-IM5, Count: 1\n", + " Label: P-0006684-T01-IM5, Count: 1\n", + " Label: P-0006688-T01-IM5, Count: 1\n", + " Label: P-0006697-T01-IM5, Count: 1\n", + " Label: P-0006698-T03-IM5, Count: 1\n", + " Label: P-0006703-T01-IM5, Count: 1\n", + " Label: P-0006709-T01-IM5, Count: 1\n", + " Label: P-0006716-T01-IM5, Count: 1\n", + " Label: P-0006724-T01-IM5, Count: 1\n", + " Label: P-0006728-T01-IM5, Count: 1\n", + " Label: P-0006742-T01-IM5, Count: 1\n", + " Label: P-0006754-T01-IM5, Count: 1\n", + " Label: P-0006768-T01-IM5, Count: 1\n", + " Label: P-0006772-T01-IM5, Count: 1\n", + " Label: P-0006776-T01-IM5, Count: 1\n", + " Label: P-0006779-T01-IM5, Count: 1\n", + " Label: P-0006785-T01-IM5, Count: 1\n", + " Label: P-0006787-T01-IM5, Count: 1\n", + " Label: P-0006789-T01-IM5, Count: 1\n", + " Label: P-0006800-T01-IM5, Count: 1\n", + " Label: P-0006806-T01-IM5, Count: 1\n", + " Label: P-0006807-T01-IM5, Count: 1\n", + " Label: P-0006809-T01-IM5, Count: 1\n", + " Label: P-0006810-T01-IM5, Count: 1\n", + " Label: P-0006811-T02-IM5, Count: 1\n", + " Label: P-0006829-T01-IM5, Count: 1\n", + " Label: P-0006854-T01-IM5, Count: 1\n", + " Label: P-0006855-T01-IM5, Count: 1\n", + " Label: P-0006857-T01-IM5, Count: 1\n", + " Label: P-0006866-T01-IM5, Count: 1\n", + " Label: P-0006876-T01-IM5, Count: 1\n", + " Label: P-0006879-T01-IM5, Count: 1\n", + " Label: P-0006886-T01-IM5, Count: 1\n", + " Label: P-0006896-T01-IM5, Count: 1\n", + " Label: P-0006905-T01-IM5, Count: 1\n", + " Label: P-0006908-T01-IM5, Count: 1\n", + " Label: P-0006910-T01-IM5, Count: 1\n", + " Label: P-0006912-T01-IM5, Count: 1\n", + " Label: P-0006913-T01-IM5, Count: 1\n", + " Label: P-0006914-T01-IM5, Count: 1\n", + " Label: P-0006915-T01-IM5, Count: 1\n", + " Label: P-0006920-T01-IM5, Count: 1\n", + " Label: P-0006923-T01-IM5, Count: 1\n", + " Label: P-0006928-T01-IM5, Count: 1\n", + " Label: P-0006929-T01-IM5, Count: 1\n", + " Label: P-0006941-T01-IM5, Count: 1\n", + " Label: P-0006946-T01-IM5, Count: 1\n", + " Label: P-0006947-T01-IM5, Count: 1\n", + " Label: P-0006950-T01-IM5, Count: 1\n", + " Label: P-0006964-T01-IM5, Count: 1\n", + " Label: P-0006966-T01-IM5, Count: 1\n", + " Label: P-0006972-T01-IM5, Count: 1\n", + " Label: P-0006976-T01-IM5, Count: 1\n", + " Label: P-0006992-T01-IM5, Count: 1\n", + " Label: P-0006994-T01-IM5, Count: 1\n", + " Label: P-0006995-T01-IM5, Count: 1\n", + " Label: P-0006996-T01-IM5, Count: 1\n", + " Label: P-0007000-T01-IM5, Count: 1\n", + " Label: P-0007001-T01-IM5, Count: 1\n", + " Label: P-0007009-T01-IM5, Count: 1\n", + " Label: P-0007015-T01-IM5, Count: 1\n", + " Label: P-0007017-T01-IM5, Count: 1\n", + " Label: P-0007018-T01-IM5, Count: 1\n", + " Label: P-0007020-T01-IM5, Count: 1\n", + " Label: P-0007024-T01-IM5, Count: 1\n", + " Label: P-0007027-T01-IM5, Count: 1\n", + " Label: P-0007029-T01-IM5, Count: 1\n", + " Label: P-0007031-T01-IM5, Count: 1\n", + " Label: P-0007043-T01-IM5, Count: 1\n", + " Label: P-0007045-T01-IM5, Count: 1\n", + " Label: P-0007062-T01-IM5, Count: 1\n", + " Label: P-0007063-T01-IM5, Count: 1\n", + " Label: P-0007067-T01-IM5, Count: 1\n", + " Label: P-0007068-T01-IM5, Count: 1\n", + " Label: P-0007089-T02-IM5, Count: 1\n", + " Label: P-0007091-T01-IM5, Count: 1\n", + " Label: P-0007093-T01-IM5, Count: 1\n", + " Label: P-0007101-T02-IM5, Count: 1\n", + " Label: P-0007104-T01-IM5, Count: 1\n", + " Label: P-0007108-T01-IM5, Count: 1\n", + " Label: P-0007109-T01-IM5, Count: 1\n", + " Label: P-0007124-T01-IM5, Count: 1\n", + " Label: P-0007127-T01-IM5, Count: 1\n", + " Label: P-0007131-T01-IM5, Count: 1\n", + " Label: P-0007139-T01-IM5, Count: 1\n", + " Label: P-0007148-T01-IM5, Count: 1\n", + " Label: P-0007155-T01-IM5, Count: 1\n", + " Label: P-0007167-T01-IM5, Count: 1\n", + " Label: P-0007178-T01-IM5, Count: 1\n", + " Label: P-0007182-T01-IM5, Count: 1\n", + " Label: P-0007183-T01-IM5, Count: 1\n", + " Label: P-0007224-T01-IM5, Count: 1\n", + " Label: P-0007231-T01-IM5, Count: 1\n", + " Label: P-0007234-T01-IM5, Count: 1\n", + " Label: P-0007236-T01-IM5, Count: 1\n", + " Label: P-0007238-T01-IM5, Count: 1\n", + " Label: P-0007267-T01-IM5, Count: 1\n", + " Label: P-0007278-T01-IM5, Count: 1\n", + " Label: P-0007282-T01-IM5, Count: 1\n", + " Label: P-0007284-T01-IM5, Count: 1\n", + " Label: P-0007285-T01-IM5, Count: 1\n", + " Label: P-0007289-T02-IM5, Count: 1\n", + " Label: P-0007299-T02-IM5, Count: 1\n", + " Label: P-0007307-T02-IM5, Count: 1\n", + " Label: P-0007309-T01-IM5, Count: 1\n", + " Label: P-0007312-T01-IM5, Count: 1\n", + " Label: P-0007313-T01-IM5, Count: 1\n", + " Label: P-0007318-T01-IM5, Count: 1\n", + " Label: P-0007320-T01-IM5, Count: 1\n", + " Label: P-0007324-T01-IM5, Count: 1\n", + " Label: P-0007328-T01-IM5, Count: 1\n", + " Label: P-0007332-T01-IM5, Count: 1\n", + " Label: P-0007335-T02-IM5, Count: 1\n", + " Label: P-0007349-T01-IM5, Count: 1\n", + " Label: P-0007355-T01-IM5, Count: 1\n", + " Label: P-0007393-T01-IM5, Count: 1\n", + " Label: P-0007396-T01-IM5, Count: 1\n", + " Label: P-0007402-T01-IM5, Count: 1\n", + " Label: P-0007416-T01-IM5, Count: 1\n", + " Label: P-0007418-T01-IM5, Count: 1\n", + " Label: P-0007423-T01-IM5, Count: 1\n", + " Label: P-0007496-T01-IM5, Count: 1\n", + " Label: P-0007497-T01-IM5, Count: 1\n", + " Label: P-0007508-T01-IM5, Count: 1\n", + " Label: P-0007515-T01-IM5, Count: 1\n", + " Label: P-0007516-T01-IM5, Count: 1\n", + " Label: P-0007517-T01-IM5, Count: 1\n", + " Label: P-0007518-T01-IM5, Count: 1\n", + " Label: P-0007521-T01-IM5, Count: 1\n", + " Label: P-0007538-T01-IM5, Count: 1\n", + " Label: P-0007539-T01-IM5, Count: 1\n", + " Label: P-0007544-T01-IM5, Count: 1\n", + " Label: P-0007545-T01-IM5, Count: 1\n", + " Label: P-0007556-T01-IM5, Count: 1\n", + " Label: P-0007557-T01-IM5, Count: 1\n", + " Label: P-0007566-T01-IM5, Count: 1\n", + " Label: P-0007573-T01-IM5, Count: 1\n", + " Label: P-0007577-T01-IM5, Count: 1\n", + " Label: P-0007578-T01-IM5, Count: 1\n", + " Label: P-0007580-T01-IM5, Count: 1\n", + " Label: P-0007582-T01-IM5, Count: 1\n", + " Label: P-0007597-T01-IM5, Count: 1\n", + " Label: P-0007608-T01-IM5, Count: 1\n", + " Label: P-0007629-T01-IM5, Count: 1\n", + " Label: P-0007640-T01-IM5, Count: 1\n", + " Label: P-0007658-T01-IM5, Count: 1\n", + " Label: P-0007661-T01-IM5, Count: 1\n", + " Label: P-0007663-T01-IM5, Count: 1\n", + " Label: P-0007680-T01-IM5, Count: 1\n", + " Label: P-0007681-T01-IM5, Count: 1\n", + " Label: P-0007682-T01-IM5, Count: 1\n", + " Label: P-0007684-T01-IM5, Count: 1\n", + " Label: P-0007685-T01-IM5, Count: 1\n", + " Label: P-0007694-T01-IM5, Count: 1\n", + " Label: P-0007700-T01-IM5, Count: 1\n", + " Label: P-0007705-T01-IM5, Count: 1\n", + " Label: P-0007736-T01-IM5, Count: 1\n", + " Label: P-0007749-T01-IM5, Count: 1\n", + " Label: P-0007750-T01-IM5, Count: 1\n", + " Label: P-0007751-T01-IM5, Count: 1\n", + " Label: P-0007755-T01-IM5, Count: 1\n", + " Label: P-0007775-T01-IM5, Count: 1\n", + " Label: P-0007780-T01-IM5, Count: 1\n", + " Label: P-0007792-T01-IM5, Count: 1\n", + " Label: P-0007794-T01-IM5, Count: 1\n", + " Label: P-0007805-T01-IM5, Count: 1\n", + " Label: P-0007806-T01-IM5, Count: 1\n", + " Label: P-0007808-T01-IM5, Count: 1\n", + " Label: P-0007813-T01-IM5, Count: 1\n", + " Label: P-0007815-T01-IM5, Count: 1\n", + " Label: P-0007816-T01-IM5, Count: 1\n", + " Label: P-0007835-T01-IM5, Count: 1\n", + " Label: P-0007837-T01-IM5, Count: 1\n", + " Label: P-0007844-T01-IM5, Count: 1\n", + " Label: P-0007865-T01-IM5, Count: 1\n", + " Label: P-0007870-T01-IM5, Count: 1\n", + " Label: P-0007872-T01-IM5, Count: 1\n", + " Label: P-0007891-T01-IM5, Count: 1\n", + " Label: P-0007894-T01-IM5, Count: 1\n", + " Label: P-0007896-T01-IM5, Count: 1\n", + " Label: P-0007897-T01-IM5, Count: 1\n", + " Label: P-0007900-T01-IM5, Count: 1\n", + " Label: P-0007901-T01-IM5, Count: 1\n", + " Label: P-0007906-T01-IM5, Count: 1\n", + " Label: P-0007924-T01-IM5, Count: 1\n", + " Label: P-0007926-T01-IM5, Count: 1\n", + " Label: P-0007927-T01-IM5, Count: 1\n", + " Label: P-0007932-T01-IM5, Count: 1\n", + " Label: P-0007961-T02-IM5, Count: 1\n", + " Label: P-0007977-T01-IM5, Count: 1\n", + " Label: P-0007980-T01-IM5, Count: 1\n", + " Label: P-0007989-T01-IM5, Count: 1\n", + " Label: P-0007991-T01-IM5, Count: 1\n", + " Label: P-0007994-T01-IM5, Count: 1\n", + " Label: P-0008009-T01-IM5, Count: 1\n", + " Label: P-0008010-T01-IM5, Count: 1\n", + " Label: P-0008012-T01-IM5, Count: 1\n", + " Label: P-0008027-T01-IM5, Count: 1\n", + " Label: P-0008032-T01-IM5, Count: 1\n", + " Label: P-0008041-T01-IM5, Count: 1\n", + " Label: P-0008048-T01-IM5, Count: 1\n", + " Label: P-0008060-T01-IM5, Count: 1\n", + " Label: P-0008062-T01-IM5, Count: 1\n", + " Label: P-0008074-T01-IM5, Count: 1\n", + " Label: P-0008078-T01-IM5, Count: 1\n", + " Label: P-0008099-T01-IM5, Count: 1\n", + " Label: P-0008131-T01-IM5, Count: 1\n", + " Label: P-0008139-T02-IM5, Count: 1\n", + " Label: P-0008140-T01-IM5, Count: 1\n", + " Label: P-0008145-T01-IM5, Count: 1\n", + " Label: P-0008149-T01-IM5, Count: 1\n", + " Label: P-0008166-T01-IM5, Count: 1\n", + " Label: P-0008167-T02-IM5, Count: 1\n", + " Label: P-0008172-T01-IM5, Count: 1\n", + " Label: P-0008179-T01-IM5, Count: 1\n", + " Label: P-0008189-T01-IM5, Count: 1\n", + " Label: P-0008205-T01-IM5, Count: 1\n", + " Label: P-0008206-T01-IM5, Count: 1\n", + " Label: P-0008211-T02-IM5, Count: 1\n", + " Label: P-0008213-T02-IM5, Count: 1\n", + " Label: P-0008215-T01-IM5, Count: 1\n", + " Label: P-0008228-T01-IM5, Count: 1\n", + " Label: P-0008233-T01-IM5, Count: 1\n", + " Label: P-0008242-T01-IM5, Count: 1\n", + " Label: P-0008249-T01-IM5, Count: 1\n", + " Label: P-0008257-T01-IM5, Count: 1\n", + " Label: P-0008258-T01-IM5, Count: 1\n", + " Label: P-0008262-T01-IM5, Count: 1\n", + " Label: P-0008300-T01-IM5, Count: 1\n", + " Label: P-0008313-T01-IM5, Count: 1\n", + " Label: P-0008315-T01-IM5, Count: 1\n", + " Label: P-0008333-T01-IM5, Count: 1\n", + " Label: P-0008336-T01-IM5, Count: 1\n", + " Label: P-0008341-T01-IM5, Count: 1\n", + " Label: P-0008346-T01-IM5, Count: 1\n", + " Label: P-0008369-T01-IM5, Count: 1\n", + " Label: P-0008378-T01-IM5, Count: 1\n", + " Label: P-0008382-T01-IM5, Count: 1\n", + " Label: P-0008385-T01-IM5, Count: 1\n", + " Label: P-0008386-T01-IM5, Count: 1\n", + " Label: P-0008388-T01-IM5, Count: 1\n", + " Label: P-0008390-T01-IM5, Count: 1\n", + " Label: P-0008397-T01-IM5, Count: 1\n", + " Label: P-0008406-T01-IM5, Count: 1\n", + " Label: P-0008419-T01-IM5, Count: 1\n", + " Label: P-0008426-T01-IM5, Count: 1\n", + " Label: P-0008427-T01-IM5, Count: 1\n", + " Label: P-0008430-T01-IM5, Count: 1\n", + " Label: P-0008433-T01-IM5, Count: 1\n", + " Label: P-0008435-T01-IM5, Count: 1\n", + " Label: P-0008441-T01-IM5, Count: 1\n", + " Label: P-0008448-T01-IM5, Count: 1\n", + " Label: P-0008452-T01-IM5, Count: 1\n", + " Label: P-0008457-T02-IM5, Count: 1\n", + " Label: P-0008459-T02-IM5, Count: 1\n", + " Label: P-0008461-T01-IM5, Count: 1\n", + " Label: P-0008466-T01-IM5, Count: 1\n", + " Label: P-0008470-T01-IM5, Count: 1\n", + " Label: P-0008472-T01-IM5, Count: 1\n", + " Label: P-0008482-T01-IM5, Count: 1\n", + " Label: P-0008558-T02-IM5, Count: 1\n", + " Label: P-0008559-T01-IM5, Count: 1\n", + " Label: P-0008562-T01-IM5, Count: 1\n", + " Label: P-0008570-T01-IM5, Count: 1\n", + " Label: P-0008571-T01-IM5, Count: 1\n", + " Label: P-0008572-T01-IM5, Count: 1\n", + " Label: P-0008575-T01-IM5, Count: 1\n", + " Label: P-0008577-T01-IM5, Count: 1\n", + " Label: P-0008598-T01-IM5, Count: 1\n", + " Label: P-0008601-T01-IM5, Count: 1\n", + " Label: P-0008602-T01-IM5, Count: 1\n", + " Label: P-0008645-T01-IM5, Count: 1\n", + " Label: P-0008653-T01-IM5, Count: 1\n", + " Label: P-0008659-T01-IM5, Count: 1\n", + " Label: P-0008666-T01-IM5, Count: 1\n", + " Label: P-0008677-T01-IM5, Count: 1\n", + " Label: P-0008678-T01-IM5, Count: 1\n", + " Label: P-0008682-T01-IM5, Count: 1\n", + " Label: P-0008691-T01-IM5, Count: 1\n", + " Label: P-0008694-T01-IM5, Count: 1\n", + " Label: P-0008707-T01-IM5, Count: 1\n", + " Label: P-0008712-T01-IM5, Count: 1\n", + " Label: P-0008713-T01-IM5, Count: 1\n", + " Label: P-0008732-T01-IM5, Count: 1\n", + " Label: P-0008744-T01-IM5, Count: 1\n", + " Label: P-0008751-T01-IM5, Count: 1\n", + " Label: P-0008757-T01-IM5, Count: 1\n", + " Label: P-0008764-T01-IM5, Count: 1\n", + " Label: P-0008765-T01-IM5, Count: 1\n", + " Label: P-0008767-T01-IM5, Count: 1\n", + " Label: P-0008769-T02-IM5, Count: 1\n", + " Label: P-0008770-T01-IM5, Count: 1\n", + " Label: P-0008772-T01-IM5, Count: 1\n", + " Label: P-0008777-T01-IM5, Count: 1\n", + " Label: P-0008790-T01-IM5, Count: 1\n", + " Label: P-0008795-T01-IM5, Count: 1\n", + " Label: P-0008796-T01-IM5, Count: 1\n", + " Label: P-0008812-T01-IM5, Count: 1\n", + " Label: P-0008817-T01-IM5, Count: 1\n", + " Label: P-0008833-T01-IM5, Count: 1\n", + " Label: P-0008839-T01-IM5, Count: 1\n", + " Label: P-0008846-T01-IM5, Count: 1\n", + " Label: P-0008848-T01-IM5, Count: 1\n", + " Label: P-0008849-T01-IM5, Count: 1\n", + " Label: P-0008852-T01-IM5, Count: 1\n", + " Label: P-0008855-T01-IM5, Count: 1\n", + " Label: P-0008856-T01-IM5, Count: 1\n", + " Label: P-0008906-T01-IM5, Count: 1\n", + " Label: P-0008908-T01-IM5, Count: 1\n", + " Label: P-0008910-T02-IM5, Count: 1\n", + " Label: P-0008911-T01-IM5, Count: 1\n", + " Label: P-0008917-T01-IM5, Count: 1\n", + " Label: P-0008920-T01-IM5, Count: 1\n", + " Label: P-0008923-T01-IM5, Count: 1\n", + " Label: P-0008928-T01-IM5, Count: 1\n", + " Label: P-0008929-T01-IM5, Count: 1\n", + " Label: P-0008930-T01-IM5, Count: 1\n", + " Label: P-0008934-T01-IM5, Count: 1\n", + " Label: P-0008937-T01-IM5, Count: 1\n", + " Label: P-0008942-T01-IM5, Count: 1\n", + " Label: P-0008944-T01-IM5, Count: 1\n", + " Label: P-0008945-T01-IM5, Count: 1\n", + " Label: P-0008947-T01-IM5, Count: 1\n", + " Label: P-0008948-T01-IM5, Count: 1\n", + " Label: P-0008953-T01-IM5, Count: 1\n", + " Label: P-0008963-T01-IM5, Count: 1\n", + " Label: P-0008966-T01-IM5, Count: 1\n", + " Label: P-0008968-T01-IM5, Count: 1\n", + " Label: P-0008970-T01-IM5, Count: 1\n", + " Label: P-0008978-T01-IM5, Count: 1\n", + " Label: P-0008999-T01-IM5, Count: 1\n", + " Label: P-0009001-T01-IM5, Count: 1\n", + " Label: P-0009002-T01-IM5, Count: 1\n", + " Label: P-0009014-T01-IM5, Count: 1\n", + " Label: P-0009017-T01-IM5, Count: 1\n", + " Label: P-0009026-T01-IM5, Count: 1\n", + " Label: P-0009042-T01-IM5, Count: 1\n", + " Label: P-0009045-T01-IM5, Count: 1\n", + " Label: P-0009046-T01-IM5, Count: 1\n", + " Label: P-0009052-T01-IM5, Count: 1\n", + " Label: P-0009056-T01-IM5, Count: 1\n", + " Label: P-0009080-T01-IM5, Count: 1\n", + " Label: P-0009082-T01-IM5, Count: 1\n", + " Label: P-0009083-T01-IM5, Count: 1\n", + " Label: P-0009098-T01-IM5, Count: 1\n", + " Label: P-0009122-T01-IM5, Count: 1\n", + " Label: P-0009143-T01-IM5, Count: 1\n", + " Label: P-0009146-T01-IM5, Count: 1\n", + " Label: P-0009147-T01-IM5, Count: 1\n", + " Label: P-0009148-T01-IM5, Count: 1\n", + " Label: P-0009151-T01-IM5, Count: 1\n", + " Label: P-0009155-T01-IM5, Count: 1\n", + " Label: P-0009160-T01-IM5, Count: 1\n", + " Label: P-0009171-T01-IM5, Count: 1\n", + " Label: P-0009184-T01-IM5, Count: 1\n", + " Label: P-0009189-T01-IM5, Count: 1\n", + " Label: P-0009201-T01-IM5, Count: 1\n", + " Label: P-0009223-T01-IM5, Count: 1\n", + " Label: P-0009240-T01-IM5, Count: 1\n", + " Label: P-0009243-T01-IM5, Count: 1\n", + " Label: P-0009245-T01-IM5, Count: 1\n", + " Label: P-0009249-T01-IM5, Count: 1\n", + " Label: P-0009253-T01-IM5, Count: 1\n", + " Label: P-0009261-T01-IM5, Count: 1\n", + " Label: P-0009266-T01-IM5, Count: 1\n", + " Label: P-0009271-T01-IM5, Count: 1\n", + " Label: P-0009274-T01-IM5, Count: 1\n", + " Label: P-0009297-T01-IM5, Count: 1\n", + " Label: P-0009311-T01-IM5, Count: 1\n", + " Label: P-0009313-T01-IM5, Count: 1\n", + " Label: P-0009314-T01-IM5, Count: 1\n", + " Label: P-0009327-T01-IM5, Count: 1\n", + " Label: P-0009330-T01-IM5, Count: 1\n", + " Label: P-0009333-T01-IM5, Count: 1\n", + " Label: P-0009339-T01-IM5, Count: 1\n", + " Label: P-0009344-T01-IM5, Count: 1\n", + " Label: P-0009349-T01-IM5, Count: 1\n", + " Label: P-0009350-T01-IM5, Count: 1\n", + " Label: P-0009356-T01-IM5, Count: 1\n", + " Label: P-0009364-T01-IM5, Count: 1\n", + " Label: P-0009365-T01-IM5, Count: 1\n", + " Label: P-0009369-T01-IM5, Count: 1\n", + " Label: P-0009374-T02-IM5, Count: 1\n", + " Label: P-0009376-T01-IM5, Count: 1\n", + " Label: P-0009399-T01-IM5, Count: 1\n", + " Label: P-0009406-T02-IM5, Count: 1\n", + " Label: P-0009416-T01-IM5, Count: 1\n", + " Label: P-0009423-T01-IM5, Count: 1\n", + " Label: P-0009431-T01-IM5, Count: 1\n", + " Label: P-0009434-T01-IM5, Count: 1\n", + " Label: P-0009436-T01-IM5, Count: 1\n", + " Label: P-0009439-T01-IM5, Count: 1\n", + " Label: P-0009441-T01-IM5, Count: 1\n", + " Label: P-0009449-T01-IM5, Count: 1\n", + " Label: P-0009451-T01-IM5, Count: 1\n", + " Label: P-0009453-T01-IM5, Count: 1\n", + " Label: P-0009458-T01-IM5, Count: 1\n", + " Label: P-0009460-T01-IM5, Count: 1\n", + " Label: P-0009465-T01-IM5, Count: 1\n", + " Label: P-0009467-T01-IM5, Count: 1\n", + " Label: P-0009468-T01-IM5, Count: 1\n", + " Label: P-0009473-T01-IM5, Count: 1\n", + " Label: P-0009474-T01-IM5, Count: 1\n", + " Label: P-0009475-T01-IM5, Count: 1\n", + " Label: P-0009477-T01-IM5, Count: 1\n", + " Label: P-0009480-T01-IM5, Count: 1\n", + " Label: P-0009490-T01-IM5, Count: 1\n", + " Label: P-0009498-T01-IM5, Count: 1\n", + " Label: P-0009499-T01-IM5, Count: 1\n", + " Label: P-0009501-T01-IM5, Count: 1\n", + " Label: P-0009505-T01-IM5, Count: 1\n", + " Label: P-0009507-T01-IM5, Count: 1\n", + " Label: P-0009526-T01-IM5, Count: 1\n", + " Label: P-0009527-T01-IM5, Count: 1\n", + " Label: P-0009538-T01-IM5, Count: 1\n", + " Label: P-0009542-T01-IM5, Count: 1\n", + " Label: P-0009543-T01-IM5, Count: 1\n", + " Label: P-0009546-T01-IM5, Count: 1\n", + " Label: P-0009557-T01-IM5, Count: 1\n", + " Label: P-0009559-T01-IM5, Count: 1\n", + " Label: P-0009586-T01-IM5, Count: 1\n", + " Label: P-0009587-T01-IM5, Count: 1\n", + " Label: P-0009595-T01-IM5, Count: 1\n", + " Label: P-0009612-T01-IM5, Count: 1\n", + " Label: P-0009614-T01-IM5, Count: 1\n", + " Label: P-0009623-T01-IM5, Count: 1\n", + " Label: P-0009629-T01-IM5, Count: 1\n", + " Label: P-0009632-T01-IM5, Count: 1\n", + " Label: P-0009634-T01-IM5, Count: 1\n", + " Label: P-0009636-T01-IM5, Count: 1\n", + " Label: P-0009641-T01-IM5, Count: 1\n", + " Label: P-0009647-T01-IM5, Count: 1\n", + " Label: P-0009656-T01-IM5, Count: 1\n", + " Label: P-0009687-T01-IM5, Count: 1\n", + " Label: P-0009688-T01-IM5, Count: 1\n", + " Label: P-0009702-T01-IM5, Count: 1\n", + " Label: P-0009708-T01-IM5, Count: 1\n", + " Label: P-0009711-T01-IM5, Count: 1\n", + " Label: P-0009715-T01-IM5, Count: 1\n", + " Label: P-0009736-T01-IM5, Count: 1\n", + " Label: P-0009748-T01-IM5, Count: 1\n", + " Label: P-0009749-T01-IM5, Count: 1\n", + " Label: P-0009753-T01-IM5, Count: 1\n", + " Label: P-0009759-T01-IM5, Count: 1\n", + " Label: P-0009763-T01-IM5, Count: 1\n", + " Label: P-0009765-T01-IM5, Count: 1\n", + " Label: P-0009790-T01-IM5, Count: 1\n", + " Label: P-0009791-T01-IM5, Count: 1\n", + " Label: P-0009793-T01-IM5, Count: 1\n", + " Label: P-0009817-T01-IM5, Count: 1\n", + " Label: P-0009821-T01-IM5, Count: 1\n", + " Label: P-0009823-T01-IM5, Count: 1\n", + " Label: P-0009829-T01-IM5, Count: 1\n", + " Label: P-0009841-T01-IM5, Count: 1\n", + " Label: P-0009846-T01-IM5, Count: 1\n", + " Label: P-0009855-T01-IM5, Count: 1\n", + " Label: P-0009861-T01-IM5, Count: 1\n", + " Label: P-0009864-T01-IM5, Count: 1\n", + " Label: P-0009870-T01-IM5, Count: 1\n", + " Label: P-0009873-T01-IM5, Count: 1\n", + " Label: P-0009874-T02-IM5, Count: 1\n", + " Label: P-0009876-T01-IM5, Count: 1\n", + " Label: P-0009893-T01-IM5, Count: 1\n", + " Label: P-0009907-T01-IM5, Count: 1\n", + " Label: P-0009908-T01-IM5, Count: 1\n", + " Label: P-0009910-T01-IM5, Count: 1\n", + " Label: P-0009915-T01-IM5, Count: 1\n", + " Label: P-0009921-T01-IM5, Count: 1\n", + " Label: P-0009922-T01-IM5, Count: 1\n", + " Label: P-0009923-T01-IM5, Count: 1\n", + " Label: P-0009928-T01-IM5, Count: 1\n", + " Label: P-0009933-T01-IM5, Count: 1\n", + " Label: P-0009936-T01-IM5, Count: 1\n", + " Label: P-0009948-T01-IM5, Count: 1\n", + " Label: P-0009963-T01-IM5, Count: 1\n", + " Label: P-0009970-T01-IM5, Count: 1\n", + " Label: P-0009986-T01-IM5, Count: 1\n", + " Label: P-0009989-T01-IM5, Count: 1\n", + " Label: P-0009998-T01-IM5, Count: 1\n", + " Label: P-0010010-T01-IM5, Count: 1\n", + " Label: P-0010015-T01-IM5, Count: 1\n", + " Label: P-0010024-T01-IM5, Count: 1\n", + " Label: P-0010027-T01-IM5, Count: 1\n", + " Label: P-0010030-T01-IM5, Count: 1\n", + " Label: P-0010043-T01-IM5, Count: 1\n", + " Label: P-0010066-T01-IM5, Count: 1\n", + " Label: P-0010069-T01-IM5, Count: 1\n", + " Label: P-0010075-T01-IM5, Count: 1\n", + " Label: P-0010077-T01-IM5, Count: 1\n", + " Label: P-0010078-T01-IM5, Count: 1\n", + " Label: P-0010089-T01-IM5, Count: 1\n", + " Label: P-0010091-T01-IM5, Count: 1\n", + " Label: P-0010093-T01-IM5, Count: 1\n", + " Label: P-0010094-T01-IM5, Count: 1\n", + " Label: P-0010095-T01-IM5, Count: 1\n", + " Label: P-0010110-T01-IM5, Count: 1\n", + " Label: P-0010117-T01-IM5, Count: 1\n", + " Label: P-0010126-T01-IM5, Count: 1\n", + " Label: P-0010129-T01-IM5, Count: 1\n", + " Label: P-0010133-T01-IM5, Count: 1\n", + " Label: P-0010136-T01-IM5, Count: 1\n", + " Label: P-0010145-T01-IM5, Count: 1\n", + " Label: P-0010162-T01-IM5, Count: 1\n", + " Label: P-0010163-T01-IM5, Count: 1\n", + " Label: P-0010171-T01-IM5, Count: 1\n", + " Label: P-0010172-T01-IM5, Count: 1\n", + " Label: P-0010181-T01-IM5, Count: 1\n", + " Label: P-0010195-T01-IM5, Count: 1\n", + " Label: P-0010209-T01-IM5, Count: 1\n", + " Label: P-0010210-T01-IM5, Count: 1\n", + " Label: P-0010211-T01-IM5, Count: 1\n", + " Label: P-0010213-T01-IM5, Count: 1\n", + " Label: P-0010231-T01-IM5, Count: 1\n", + " Label: P-0010232-T01-IM5, Count: 1\n", + " Label: P-0010235-T01-IM5, Count: 1\n", + " Label: P-0010237-T01-IM5, Count: 1\n", + " Label: P-0010245-T01-IM5, Count: 1\n", + " Label: P-0010256-T01-IM5, Count: 1\n", + " Label: P-0010261-T01-IM5, Count: 1\n", + " Label: P-0010271-T01-IM5, Count: 1\n", + " Label: P-0010272-T01-IM5, Count: 1\n", + " Label: P-0010273-T01-IM5, Count: 1\n", + " Label: P-0010283-T01-IM5, Count: 1\n", + " Label: P-0010302-T01-IM5, Count: 1\n", + " Label: P-0010303-T01-IM5, Count: 1\n", + " Label: P-0010309-T01-IM5, Count: 1\n", + " Label: P-0010333-T01-IM5, Count: 1\n", + " Label: P-0010334-T01-IM5, Count: 1\n", + " Label: P-0010337-T01-IM5, Count: 1\n", + " Label: P-0010338-T01-IM5, Count: 1\n", + " Label: P-0010341-T01-IM5, Count: 1\n", + " Label: P-0010344-T01-IM5, Count: 1\n", + " Label: P-0010354-T01-IM5, Count: 1\n", + " Label: P-0010358-T01-IM5, Count: 1\n", + " Label: P-0010361-T01-IM5, Count: 1\n", + " Label: P-0010372-T01-IM5, Count: 1\n", + " Label: P-0010373-T01-IM5, Count: 1\n", + " Label: P-0010397-T01-IM5, Count: 1\n", + " Label: P-0010427-T01-IM5, Count: 1\n", + " Label: P-0010445-T01-IM5, Count: 1\n", + " Label: P-0010456-T01-IM5, Count: 1\n", + " Label: P-0010458-T01-IM5, Count: 1\n", + " Label: P-0010463-T01-IM5, Count: 1\n", + " Label: P-0010464-T01-IM5, Count: 1\n", + " Label: P-0010488-T01-IM5, Count: 1\n", + " Label: P-0010490-T01-IM5, Count: 1\n", + " Label: P-0010495-T01-IM5, Count: 1\n", + " Label: P-0010507-T01-IM5, Count: 1\n", + " Label: P-0010518-T01-IM5, Count: 1\n", + " Label: P-0010528-T01-IM5, Count: 1\n", + " Label: P-0010529-T01-IM5, Count: 1\n", + " Label: P-0010530-T01-IM5, Count: 1\n", + " Label: P-0010557-T01-IM5, Count: 1\n", + " Label: P-0010558-T01-IM5, Count: 1\n", + " Label: P-0010560-T01-IM5, Count: 1\n", + " Label: P-0010563-T01-IM5, Count: 1\n", + " Label: P-0010565-T01-IM5, Count: 1\n", + " Label: P-0010566-T01-IM5, Count: 1\n", + " Label: P-0010570-T01-IM5, Count: 1\n", + " Label: P-0010575-T02-IM5, Count: 1\n", + " Label: P-0010578-T01-IM5, Count: 1\n", + " Label: P-0010582-T01-IM5, Count: 1\n", + " Label: P-0010600-T01-IM5, Count: 1\n", + " Label: P-0010610-T01-IM5, Count: 1\n", + " Label: P-0010613-T01-IM5, Count: 1\n", + " Label: P-0010632-T01-IM5, Count: 1\n", + " Label: P-0010636-T01-IM5, Count: 1\n", + " Label: P-0010640-T01-IM5, Count: 1\n", + " Label: P-0010643-T01-IM5, Count: 1\n", + " Label: P-0010657-T01-IM5, Count: 1\n", + " Label: P-0010659-T01-IM5, Count: 1\n", + " Label: P-0010662-T01-IM5, Count: 1\n", + " Label: P-0010672-T02-IM5, Count: 1\n", + " Label: P-0010684-T01-IM5, Count: 1\n", + " Label: P-0010688-T01-IM5, Count: 1\n", + " Label: P-0010689-T01-IM5, Count: 1\n", + " Label: P-0010713-T01-IM5, Count: 1\n", + " Label: P-0010720-T01-IM5, Count: 1\n", + " Label: P-0010736-T01-IM5, Count: 1\n", + " Label: P-0010737-T01-IM5, Count: 1\n", + " Label: P-0010738-T01-IM5, Count: 1\n", + " Label: P-0010743-T01-IM5, Count: 1\n", + " Label: P-0010745-T01-IM5, Count: 1\n", + " Label: P-0010753-T01-IM5, Count: 1\n", + " Label: P-0010758-T01-IM5, Count: 1\n", + " Label: P-0010760-T01-IM5, Count: 1\n", + " Label: P-0010782-T01-IM5, Count: 1\n", + " Label: P-0010793-T01-IM5, Count: 1\n", + " Label: P-0010796-T01-IM5, Count: 1\n", + " Label: P-0010802-T01-IM5, Count: 1\n", + " Label: P-0010814-T01-IM5, Count: 1\n", + " Label: P-0010822-T01-IM5, Count: 1\n", + " Label: P-0010823-T01-IM5, Count: 1\n", + " Label: P-0010830-T01-IM5, Count: 1\n", + " Label: P-0010834-T01-IM5, Count: 1\n", + " Label: P-0010838-T01-IM5, Count: 1\n", + " Label: P-0010839-T01-IM5, Count: 1\n", + " Label: P-0010841-T01-IM5, Count: 1\n", + " Label: P-0010847-T01-IM5, Count: 1\n", + " Label: P-0010850-T01-IM5, Count: 1\n", + " Label: P-0010852-T01-IM5, Count: 1\n", + " Label: P-0010857-T01-IM5, Count: 1\n", + " Label: P-0010894-T01-IM5, Count: 1\n", + " Label: P-0010895-T01-IM5, Count: 1\n", + " Label: P-0010899-T01-IM5, Count: 1\n", + " Label: P-0010901-T01-IM5, Count: 1\n", + " Label: P-0010904-T01-IM5, Count: 1\n", + " Label: P-0010911-T01-IM5, Count: 1\n", + " Label: P-0010912-T01-IM5, Count: 1\n", + " Label: P-0010916-T01-IM5, Count: 1\n", + " Label: P-0010921-T01-IM5, Count: 1\n", + " Label: P-0010922-T01-IM5, Count: 1\n", + " Label: P-0010925-T01-IM5, Count: 1\n", + " Label: P-0010930-T01-IM5, Count: 1\n", + " Label: P-0010933-T01-IM5, Count: 1\n", + " Label: P-0010937-T01-IM5, Count: 1\n", + " Label: P-0010939-T01-IM5, Count: 1\n", + " Label: P-0010940-T01-IM5, Count: 1\n", + " Label: P-0010942-T01-IM5, Count: 1\n", + " Label: P-0010948-T01-IM5, Count: 1\n", + " Label: P-0010970-T01-IM5, Count: 1\n", + " Label: P-0010978-T01-IM5, Count: 1\n", + " Label: P-0010981-T01-IM5, Count: 1\n", + " Label: P-0010984-T01-IM5, Count: 1\n", + " Label: P-0010992-T01-IM5, Count: 1\n", + " Label: P-0010993-T01-IM5, Count: 1\n", + " Label: P-0010995-T01-IM5, Count: 1\n", + " Label: P-0010996-T01-IM5, Count: 1\n", + " Label: P-0011003-T01-IM5, Count: 1\n", + " Label: P-0011008-T01-IM5, Count: 1\n", + " Label: P-0011010-T01-IM5, Count: 1\n", + " Label: P-0011016-T01-IM5, Count: 1\n", + " Label: P-0011026-T01-IM5, Count: 1\n", + " Label: P-0011030-T01-IM5, Count: 1\n", + " Label: P-0011033-T01-IM5, Count: 1\n", + " Label: P-0011036-T01-IM5, Count: 1\n", + " Label: P-0011038-T01-IM5, Count: 1\n", + " Label: P-0011043-T01-IM5, Count: 1\n", + " Label: P-0011044-T01-IM5, Count: 1\n", + " Label: P-0011072-T01-IM5, Count: 1\n", + " Label: P-0011080-T01-IM5, Count: 1\n", + " Label: P-0011081-T01-IM5, Count: 1\n", + " Label: P-0011090-T01-IM5, Count: 1\n", + " Label: P-0011093-T01-IM5, Count: 1\n", + " Label: P-0011101-T01-IM5, Count: 1\n", + " Label: P-0011119-T01-IM5, Count: 1\n", + " Label: P-0011125-T01-IM5, Count: 1\n", + " Label: P-0011129-T01-IM5, Count: 1\n", + " Label: P-0011136-T01-IM5, Count: 1\n", + " Label: P-0011141-T01-IM5, Count: 1\n", + " Label: P-0011147-T01-IM5, Count: 1\n", + " Label: P-0011154-T01-IM5, Count: 1\n", + " Label: P-0011155-T01-IM5, Count: 1\n", + " Label: P-0011161-T01-IM5, Count: 1\n", + " Label: P-0011181-T01-IM5, Count: 1\n", + " Label: P-0011185-T01-IM5, Count: 1\n", + " Label: P-0011187-T01-IM5, Count: 1\n", + " Label: P-0011192-T01-IM5, Count: 1\n", + " Label: P-0011193-T01-IM5, Count: 1\n", + " Label: P-0011197-T01-IM5, Count: 1\n", + " Label: P-0011201-T01-IM5, Count: 1\n", + " Label: P-0011206-T01-IM5, Count: 1\n", + " Label: P-0011207-T01-IM5, Count: 1\n", + " Label: P-0011210-T01-IM5, Count: 1\n", + " Label: P-0011213-T01-IM5, Count: 1\n", + " Label: P-0011219-T01-IM5, Count: 1\n", + " Label: P-0011237-T01-IM5, Count: 1\n", + " Label: P-0011241-T01-IM5, Count: 1\n", + " Label: P-0011247-T01-IM5, Count: 1\n", + " Label: P-0011257-T01-IM5, Count: 1\n", + " Label: P-0011260-T01-IM5, Count: 1\n", + " Label: P-0011279-T01-IM5, Count: 1\n", + " Label: P-0011285-T01-IM5, Count: 1\n", + " Label: P-0011290-T01-IM5, Count: 1\n", + " Label: P-0011293-T01-IM5, Count: 1\n", + " Label: P-0011297-T01-IM5, Count: 1\n", + " Label: P-0011299-T01-IM5, Count: 1\n", + " Label: P-0011303-T01-IM5, Count: 1\n", + " Label: P-0011308-T01-IM5, Count: 1\n", + " Label: P-0011321-T01-IM5, Count: 1\n", + " Label: P-0011331-T01-IM5, Count: 1\n", + " Label: P-0011334-T01-IM5, Count: 1\n", + " Label: P-0011338-T01-IM5, Count: 1\n", + " Label: P-0011339-T01-IM5, Count: 1\n", + " Label: P-0011344-T01-IM5, Count: 1\n", + " Label: P-0011348-T01-IM5, Count: 1\n", + " Label: P-0011351-T01-IM5, Count: 1\n", + " Label: P-0011361-T01-IM5, Count: 1\n", + " Label: P-0011365-T01-IM5, Count: 1\n", + " Label: P-0011367-T01-IM5, Count: 1\n", + " Label: P-0011370-T01-IM5, Count: 1\n", + " Label: P-0011373-T01-IM5, Count: 1\n", + " Label: P-0011377-T01-IM5, Count: 1\n", + " Label: P-0011378-T01-IM5, Count: 1\n", + " Label: P-0011383-T01-IM5, Count: 1\n", + " Label: P-0011388-T01-IM5, Count: 1\n", + " Label: P-0011389-T01-IM5, Count: 1\n", + " Label: P-0011390-T01-IM5, Count: 1\n", + " Label: P-0011398-T01-IM5, Count: 1\n", + " Label: P-0011401-T01-IM5, Count: 1\n", + " Label: P-0011413-T01-IM5, Count: 1\n", + " Label: P-0011433-T01-IM5, Count: 1\n", + " Label: P-0011434-T01-IM5, Count: 1\n", + " Label: P-0011435-T01-IM5, Count: 1\n", + " Label: P-0011439-T01-IM5, Count: 1\n", + " Label: P-0011442-T01-IM5, Count: 1\n", + " Label: P-0011449-T01-IM5, Count: 1\n", + " Label: P-0011463-T01-IM5, Count: 1\n", + " Label: P-0011464-T01-IM5, Count: 1\n", + " Label: P-0011470-T01-IM5, Count: 1\n", + " Label: P-0011476-T01-IM5, Count: 1\n", + " Label: P-0011483-T01-IM5, Count: 1\n", + " Label: P-0011486-T01-IM5, Count: 1\n", + " Label: P-0011503-T01-IM5, Count: 1\n", + " Label: P-0011505-T01-IM5, Count: 1\n", + " Label: P-0011521-T01-IM5, Count: 1\n", + " Label: P-0011524-T01-IM5, Count: 1\n", + " Label: P-0011535-T01-IM5, Count: 1\n", + " Label: P-0011537-T01-IM5, Count: 1\n", + " Label: P-0011542-T01-IM5, Count: 1\n", + " Label: P-0011544-T01-IM5, Count: 1\n", + " Label: P-0011555-T01-IM5, Count: 1\n", + " Label: P-0011568-T01-IM5, Count: 1\n", + " Label: P-0011580-T01-IM5, Count: 1\n", + " Label: P-0011582-T01-IM5, Count: 1\n", + " Label: P-0011592-T01-IM5, Count: 1\n", + " Label: P-0011594-T01-IM5, Count: 1\n", + " Label: P-0012002-T01-IM5, Count: 1\n", + " Label: P-0012025-T01-IM5, Count: 1\n", + " Label: P-0012027-T01-IM5, Count: 1\n", + " Label: P-0012031-T01-IM5, Count: 1\n", + " Label: P-0012046-T01-IM5, Count: 1\n", + " Label: P-0012048-T01-IM5, Count: 1\n", + " Label: P-0012055-T01-IM5, Count: 1\n", + " Label: P-0012056-T01-IM5, Count: 1\n", + " Label: P-0012070-T01-IM5, Count: 1\n", + " Label: P-0012076-T01-IM5, Count: 1\n", + " Label: P-0012077-T01-IM5, Count: 1\n", + " Label: P-0012080-T01-IM5, Count: 1\n", + " Label: P-0012081-T01-IM5, Count: 1\n", + " Label: P-0012082-T01-IM5, Count: 1\n", + " Label: P-0012084-T01-IM5, Count: 1\n", + " Label: P-0012086-T01-IM5, Count: 1\n", + " Label: P-0012088-T01-IM5, Count: 1\n", + " Label: P-0012091-T01-IM5, Count: 1\n", + " Label: P-0012092-T01-IM5, Count: 1\n", + " Label: P-0012102-T01-IM5, Count: 1\n", + " Label: P-0012109-T01-IM5, Count: 1\n", + " Label: P-0012112-T01-IM5, Count: 1\n", + " Label: P-0012117-T01-IM5, Count: 1\n", + " Label: P-0012127-T01-IM5, Count: 1\n", + " Label: P-0012148-T01-IM5, Count: 1\n", + " Label: P-0012149-T01-IM5, Count: 1\n", + " Label: P-0012153-T01-IM5, Count: 1\n", + " Label: P-0012160-T01-IM5, Count: 1\n", + " Label: P-0012184-T01-IM5, Count: 1\n", + " Label: P-0012186-T01-IM5, Count: 1\n", + " Label: P-0012194-T01-IM5, Count: 1\n", + " Label: P-0012197-T01-IM5, Count: 1\n", + " Label: P-0012199-T01-IM5, Count: 1\n", + " Label: P-0012206-T01-IM5, Count: 1\n", + " Label: P-0012222-T01-IM5, Count: 1\n", + " Label: P-0012241-T01-IM5, Count: 1\n", + " Label: P-0012243-T01-IM5, Count: 1\n", + " Label: P-0012244-T01-IM5, Count: 1\n", + " Label: P-0012250-T01-IM5, Count: 1\n", + " Label: P-0012252-T01-IM5, Count: 1\n", + " Label: P-0012254-T01-IM5, Count: 1\n", + " Label: P-0012258-T01-IM5, Count: 1\n", + " Label: P-0012259-T01-IM5, Count: 1\n", + " Label: P-0012290-T01-IM5, Count: 1\n", + " Label: P-0012303-T01-IM5, Count: 1\n", + " Label: P-0012306-T01-IM5, Count: 1\n", + " Label: P-0012307-T01-IM5, Count: 1\n", + " Label: P-0012312-T01-IM5, Count: 1\n", + " Label: P-0012314-T01-IM5, Count: 1\n", + " Label: P-0012320-T01-IM5, Count: 1\n", + " Label: P-0012329-T01-IM5, Count: 1\n", + " Label: P-0012341-T01-IM5, Count: 1\n", + " Label: P-0012393-T01-IM5, Count: 1\n", + " Label: P-0012395-T01-IM5, Count: 1\n", + " Label: P-0012400-T01-IM5, Count: 1\n", + " Label: P-0012404-T01-IM5, Count: 1\n", + "------\n", + "Summary for variable: SAMPLE_COLLECTION_SOURCE\n", + "Categorical Variable Summary:\n", + " Label: In-House, Count: 1348\n", + " Label: Outside, Count: 699\n", + "------\n", + "Summary for variable: SPECIMEN_PRESERVATION_TYPE\n", + "Categorical Variable Summary:\n", + " Label: Cell Pellet, Count: 4\n", + " Label: DNA, Count: 364\n", + " Label: FFPE, Count: 1679\n", + "------\n", + "Summary for variable: SPECIMEN_TYPE\n", + "Categorical Variable Summary:\n", + " Label: Biopsy, Count: 1126\n", + " Label: Cytology, Count: 172\n", + " Label: Resection, Count: 749\n", + "------\n", + "Summary for variable: MATCHED_STATUS\n", + "Categorical Variable Summary:\n", + " Label: Matched, Count: 2021\n", + " Label: Unmatched, Count: 26\n", + "------\n", + "Summary for variable: SAMPLE_TYPE\n", + "Categorical Variable Summary:\n", + " Label: Metastasis, Count: 1018\n", + " Label: Primary, Count: 1029\n", + "------\n", + "Summary for variable: PRIMARY_SITE\n", + "Categorical Variable Summary:\n", + " Label: Bladder, Count: 128\n", + " Label: Brain, Count: 259\n", + " Label: Breast, Count: 574\n", + " Label: Kidney, Count: 39\n", + " Label: Lung, Count: 546\n", + " Label: Pancreas, Count: 108\n", + " Label: Prostate, Count: 200\n", + " Label: Skin, Count: 94\n", + " Label: Uterus, Count: 99\n", + "------\n", + "Summary for variable: METASTATIC_SITE\n", + "Categorical Variable Summary:\n", + " Label: Abdomen, Count: 10\n", + " Label: Adrenal, Count: 2\n", + " Label: Adrenal Gland, Count: 13\n", + " Label: Arm, Count: 1\n", + " Label: Axilla, Count: 2\n", + " Label: Bile Duct, Count: 1\n", + " Label: Bladder, Count: 6\n", + " Label: Bladder Neck, Count: 1\n", + " Label: Bone, Count: 108\n", + " Label: Bowel, Count: 1\n", + " Label: Brain, Count: 65\n", + " Label: Breast, Count: 2\n", + " Label: Chest Wall, Count: 30\n", + " Label: Colon, Count: 4\n", + " Label: Duodenum, Count: 1\n", + " Label: Epidural, Count: 4\n", + " Label: Epidural Mass, Count: 1\n", + " Label: Flank, Count: 1\n", + " Label: Foot, Count: 1\n", + " Label: In-transit, Count: 11\n", + " Label: Ipsilateral Breast, Count: 4\n", + " Label: Kidney, Count: 1\n", + " Label: Liver, Count: 216\n", + " Label: Lung, Count: 75\n", + " Label: Lymph Node, Count: 235\n", + " Label: Lymph Node, Non-Regional, Count: 1\n", + " Label: Lymph Node, Regional, Count: 15\n", + " Label: Mediastinum, Count: 5\n", + " Label: Muscle, Count: 1\n", + " Label: Neck, Count: 4\n", + " Label: Not Applicable, Count: 1027\n", + " Label: Not available, Count: 1\n", + " Label: Omentum, Count: 13\n", + " Label: Orbit, Count: 1\n", + " Label: Ovary, Count: 9\n", + " Label: Pancreas, Count: 3\n", + " Label: Paraspinal, Count: 1\n", + " Label: Parasternal Mass, Count: 1\n", + " Label: Paratracheal mass, Count: 1\n", + " Label: Pelvis, Count: 17\n", + " Label: Pericardium, Count: 1\n", + " Label: Peritoneum, Count: 6\n", + " Label: Pleura, Count: 36\n", + " Label: Pleural Fluid, Count: 9\n", + " Label: Prostate, Count: 3\n", + " Label: Pubic bone, Count: 1\n", + " Label: Retroperitoneum, Count: 10\n", + " Label: Rib, Count: 1\n", + " Label: Sacral Mass, Count: 1\n", + " Label: Scalp, Count: 3\n", + " Label: Scapula, Count: 1\n", + " Label: Sigmoid Colon, Count: 1\n", + " Label: Skin, Count: 18\n", + " Label: Small Bowel, Count: 4\n", + " Label: Small bowel, Count: 1\n", + " Label: Soft Tissue, Count: 34\n", + " Label: Spine, Count: 3\n", + " Label: Spleen, Count: 1\n", + " Label: Stomach, Count: 2\n", + " Label: Subcutaneous Tissue, Count: 3\n", + " Label: Supraclavicular Mass, Count: 1\n", + " Label: Testis, Count: 2\n", + " Label: Trachea, Count: 2\n", + " Label: Unknown, Count: 1\n", + " Label: Upper Extremity, Count: 1\n", + " Label: Upper Tract, Count: 1\n", + " Label: Urethra, Count: 1\n", + " Label: Vagina, Count: 2\n", + " Label: liver, Count: 1\n", + "------\n", + "Summary for variable: SAMPLE_CLASS\n", + "Categorical Variable Summary:\n", + " Label: Tumor, Count: 2047\n", + "------\n", + "Summary for variable: ONCOTREE_CODE\n", + "Categorical Variable Summary:\n", + " Label: AASTR, Count: 45\n", + " Label: ACBC, Count: 1\n", + " Label: ACRM, Count: 6\n", + " Label: AECA, Count: 1\n", + " Label: ALUCA, Count: 3\n", + " Label: AMPCA, Count: 1\n", + " Label: ANGS, Count: 6\n", + " Label: AOAST, Count: 4\n", + " Label: AODG, Count: 12\n", + " Label: APXA, Count: 1\n", + " Label: ASTR, Count: 4\n", + " Label: ATM, Count: 2\n", + " Label: BA, Count: 1\n", + " Label: BCC, Count: 3\n", + " Label: BCCA, Count: 1\n", + " Label: BLAD, Count: 3\n", + " Label: BLCA, Count: 118\n", + " Label: BRCA, Count: 30\n", + " Label: BRCANOS, Count: 21\n", + " Label: BRCNOS, Count: 20\n", + " Label: CCRCC, Count: 17\n", + " Label: CDRCC, Count: 1\n", + " Label: CHRCC, Count: 3\n", + " Label: CSCC, Count: 4\n", + " Label: CUP, Count: 2\n", + " Label: DDLS, Count: 1\n", + " Label: DFSP, Count: 1\n", + " Label: DLBCLNOS, Count: 2\n", + " Label: EPM, Count: 1\n", + " Label: ESS, Count: 1\n", + " Label: FL, Count: 1\n", + " Label: GBM, Count: 159\n", + " Label: GSARC, Count: 4\n", + " Label: HGESS, Count: 2\n", + " Label: HGGNOS, Count: 8\n", + " Label: HNSC, Count: 1\n", + " Label: IDC, Count: 415\n", + " Label: IHCH, Count: 1\n", + " Label: ILC, Count: 53\n", + " Label: LCLC, Count: 1\n", + " Label: LGGNOS, Count: 1\n", + " Label: LMS, Count: 2\n", + " Label: LNET, Count: 2\n", + " Label: LUAD, Count: 396\n", + " Label: LUAS, Count: 5\n", + " Label: LUNE, Count: 14\n", + " Label: LUPC, Count: 1\n", + " Label: LUSC, Count: 58\n", + " Label: MBC, Count: 5\n", + " Label: MBL, Count: 1\n", + " Label: MCC, Count: 6\n", + " Label: MDLC, Count: 18\n", + " Label: MNG, Count: 5\n", + " Label: MPT, Count: 6\n", + " Label: MZL, Count: 1\n", + " Label: NBL, Count: 3\n", + " Label: NETNOS, Count: 1\n", + " Label: NSCLC, Count: 4\n", + " Label: NSCLCPD, Count: 10\n", + " Label: ODG, Count: 7\n", + " Label: OUSARC, Count: 2\n", + " Label: PAAC, Count: 5\n", + " Label: PAAD, Count: 82\n", + " Label: PAMPCA, Count: 1\n", + " Label: PANET, Count: 15\n", + " Label: PECOMA, Count: 1\n", + " Label: PEMESO, Count: 1\n", + " Label: PRAD, Count: 189\n", + " Label: PRCC, Count: 7\n", + " Label: PRNE, Count: 7\n", + " Label: PRSCC, Count: 4\n", + " Label: RMS, Count: 1\n", + " Label: SARCL, Count: 2\n", + " Label: SARCNOS, Count: 2\n", + " Label: SCB, Count: 2\n", + " Label: SCBC, Count: 1\n", + " Label: SCLC, Count: 41\n", + " Label: SFT, Count: 2\n", + " Label: SKAC, Count: 1\n", + " Label: SKCM, Count: 68\n", + " Label: SPCC, Count: 1\n", + " Label: SRCBC, Count: 1\n", + " Label: TRCC, Count: 2\n", + " Label: UA, Count: 1\n", + " Label: UAS, Count: 1\n", + " Label: UCCC, Count: 6\n", + " Label: UCP, Count: 1\n", + " Label: UCS, Count: 17\n", + " Label: UCU, Count: 1\n", + " Label: UDDC, Count: 1\n", + " Label: UEC, Count: 8\n", + " Label: ULMS, Count: 27\n", + " Label: UMEC, Count: 6\n", + " Label: UMLMS, Count: 1\n", + " Label: UNEC, Count: 1\n", + " Label: UPECOMA, Count: 5\n", + " Label: URCC, Count: 6\n", + " Label: USC, Count: 16\n", + " Label: USTUMP, Count: 1\n", + " Label: UUC, Count: 1\n", + " Label: UUS, Count: 1\n", + " Label: WT, Count: 1\n", + "------\n", + "Summary for variable: CANCER_TYPE\n", + "Categorical Variable Summary:\n", + " Label: Ampullary Cancer, Count: 1\n", + " Label: Ampullary Carcinoma, Count: 1\n", + " Label: Bladder Cancer, Count: 127\n", + " Label: Breast Cancer, Count: 570\n", + " Label: CNS Cancer, Count: 8\n", + " Label: Cancer of Unknown Primary, Count: 3\n", + " Label: Embryonal Tumor, Count: 1\n", + " Label: Endometrial Cancer, Count: 56\n", + " Label: Germ Cell Tumor, Count: 1\n", + " Label: Glioma, Count: 245\n", + " Label: Head and Neck Cancer, Count: 1\n", + " Label: Hepatobiliary Cancer, Count: 1\n", + " Label: Mature B-Cell Neoplasms, Count: 4\n", + " Label: Melanoma, Count: 74\n", + " Label: Mesothelioma, Count: 1\n", + " Label: Non-Small Cell Lung Cancer, Count: 497\n", + " Label: Pancreatic Cancer, Count: 103\n", + " Label: Peripheral Nervous System, Count: 3\n", + " Label: Prostate Cancer, Count: 200\n", + " Label: Renal Cell Carcinoma, Count: 36\n", + " Label: Skin Cancer, Non-Melanoma, Count: 16\n", + " Label: Small Cell Lung Cancer, Count: 41\n", + " Label: Soft Tissue Sarcoma, Count: 15\n", + " Label: Uterine Sarcoma, Count: 41\n", + " Label: Wilms Tumor, Count: 1\n", + "------\n", + "Summary for variable: CANCER_TYPE_DETAILED\n", + "Categorical Variable Summary:\n", + " Label: Acinar Cell Carcinoma of the Pancreas, Count: 5\n", + " Label: Acral Melanoma, Count: 6\n", + " Label: Adenoid Cystic Breast Cancer, Count: 1\n", + " Label: Ampullary Carcinoma, Count: 1\n", + " Label: Anaplastic Astrocytoma, Count: 45\n", + " Label: Anaplastic Oligoastrocytoma, Count: 4\n", + " Label: Anaplastic Oligodendroglioma, Count: 12\n", + " Label: Anaplastic Pleomorphic Xanthoastrocytoma, Count: 1\n", + " Label: Angiosarcoma, Count: 6\n", + " Label: Astrocytoma, Count: 4\n", + " Label: Atypical Lung Carcinoid, Count: 3\n", + " Label: Atypical Meningioma, Count: 2\n", + " Label: Basal Cell Carcinoma, Count: 3\n", + " Label: Bladder Adenocarcinoma, Count: 3\n", + " Label: Bladder Urothelial Carcinoma, Count: 118\n", + " Label: Breast Angiosarcoma, Count: 1\n", + " Label: Breast Invasive Cancer, NOS, Count: 21\n", + " Label: Breast Invasive Carcinoma, NOS, Count: 20\n", + " Label: Breast Invasive Ductal Carcinoma, Count: 415\n", + " Label: Breast Invasive Lobular Carcinoma, Count: 53\n", + " Label: Breast Mixed Ductal and Lobular Carcinoma, Count: 18\n", + " Label: Cancer of Unknown Primary, Count: 2\n", + " Label: Choriocarcinoma, Count: 1\n", + " Label: Chromophobe Renal Cell Carcinoma, Count: 3\n", + " Label: Collecting Duct Renal Cell Carcinoma, Count: 1\n", + " Label: Cutaneous Melanoma, Count: 68\n", + " Label: Cutaneous Squamous Cell Carcinoma, Count: 4\n", + " Label: Dedifferentiated Liposarcoma, Count: 1\n", + " Label: Dermatofibrosarcoma Protuberans, Count: 1\n", + " Label: Diffuse Large B-Cell Lymphoma, NOS, Count: 2\n", + " Label: Endometrial Stromal Sarcoma, Count: 1\n", + " Label: Ependymoma, Count: 1\n", + " Label: Follicular Lymphoma, Count: 1\n", + " Label: Glioblastoma Multiforme, Count: 159\n", + " Label: Gliosarcoma, Count: 4\n", + " Label: Head and Neck Squamous Cell Carcinoma, Count: 1\n", + " Label: High-Grade Endometrial Stromal Sarcoma, Count: 2\n", + " Label: High-Grade Glioma, NOS, Count: 8\n", + " Label: Intrahepatic Cholangiocarcinoma, Count: 1\n", + " Label: Invasive Breast Carcinoma, Count: 30\n", + " Label: Large Cell Lung Carcinoma, Count: 1\n", + " Label: Large Cell Neuroendocrine Carcinoma, Count: 14\n", + " Label: Leiomyosarcoma, Count: 2\n", + " Label: Low-Grade Glioma, NOS, Count: 1\n", + " Label: Lung Adenocarcinoma, Count: 396\n", + " Label: Lung Adenosquamous Carcinoma, Count: 5\n", + " Label: Lung Neuroendocrine Tumor, Count: 2\n", + " Label: Lung Squamous Cell Carcinoma, Count: 58\n", + " Label: Malignant Phyllodes Tumor of the Breast, Count: 6\n", + " Label: Marginal Zone Lymphoma, Count: 1\n", + " Label: Medulloblastoma, Count: 1\n", + " Label: Meningioma, Count: 5\n", + " Label: Merkel Cell Carcinoma, Count: 6\n", + " Label: Metaplastic Breast Cancer, Count: 5\n", + " Label: Neuroblastoma, Count: 3\n", + " Label: Neuroendocrine Tumor, NOS, Count: 1\n", + " Label: Non-Small Cell Lung Cancer, Count: 4\n", + " Label: Oligodendroglioma, Count: 7\n", + " Label: Pancreatic Adenocarcinoma, Count: 82\n", + " Label: Pancreatic Neuroendocrine Tumor, Count: 15\n", + " Label: Pancreatobiliary Ampullary Carcinoma, Count: 1\n", + " Label: Papillary Renal Cell Carcinoma, Count: 7\n", + " Label: Peritoneal Mesothelioma, Count: 1\n", + " Label: Perivascular Epithelioid Cell Tumor, Count: 1\n", + " Label: Plasmacytoid/Signet Ring Cell Bladder Carcinoma, Count: 1\n", + " Label: Pleomorphic Carcinoma of the Lung, Count: 1\n", + " Label: Poorly Differentiated Non-Small Cell Lung Cancer, Count: 10\n", + " Label: Prostate Adenocarcinoma, Count: 189\n", + " Label: Prostate Neuroendocrine Carcinoma, Count: 7\n", + " Label: Prostate Small Cell Carcinoma, Count: 4\n", + " Label: Renal Clear Cell Carcinoma, Count: 17\n", + " Label: Rhabdomyosarcoma, Count: 1\n", + " Label: Sarcoma, NOS, Count: 2\n", + " Label: Sarcomatoid Carcinoma of the Lung, Count: 2\n", + " Label: Sarcomatoid Carcinoma of the Urinary Bladder, Count: 2\n", + " Label: Skin Adnexal Carcinoma, Count: 1\n", + " Label: Small Cell Bladder Cancer, Count: 1\n", + " Label: Small Cell Lung Cancer, Count: 41\n", + " Label: Solitary Fibrous Tumor/Hemangiopericytoma, Count: 2\n", + " Label: Spindle Cell Carcinoma of the Lung, Count: 1\n", + " Label: Sweat Gland Carcinoma/Apocrine Eccrine Carcinoma, Count: 1\n", + " Label: Translocation-Associated Renal Cell Carcinoma, Count: 2\n", + " Label: Unclassified Renal Cell Carcinoma, Count: 6\n", + " Label: Undifferentiated Carcinoma of the Pancreas, Count: 1\n", + " Label: Undifferentiated Uterine Sarcoma, Count: 1\n", + " Label: Urachal Adenocarcinoma, Count: 1\n", + " Label: Urethral Urothelial Carcinoma, Count: 1\n", + " Label: Uterine Adenosarcoma, Count: 1\n", + " Label: Uterine Carcinosarcoma/Uterine Malignant Mixed Mullerian Tumor, Count: 17\n", + " Label: Uterine Clear Cell Carcinoma, Count: 6\n", + " Label: Uterine Dedifferentiated Carcinoma, Count: 1\n", + " Label: Uterine Endometrioid Carcinoma, Count: 8\n", + " Label: Uterine Leiomyosarcoma, Count: 27\n", + " Label: Uterine Mixed Endometrial Carcinoma, Count: 6\n", + " Label: Uterine Myxoid Leiomyosarcoma, Count: 1\n", + " Label: Uterine Neuroendocrine Carcinoma, Count: 1\n", + " Label: Uterine Perivascular Epithelioid Cell Tumor, Count: 5\n", + " Label: Uterine Sarcoma, Other, Count: 2\n", + " Label: Uterine Serous Carcinoma/Uterine Papillary Serous Carcinoma, Count: 16\n", + " Label: Uterine Smooth Muscle Tumor of Uncertain Malignant Potential, Count: 1\n", + " Label: Uterine Undifferentiated Carcinoma, Count: 1\n", + " Label: Wilms' Tumor, Count: 1\n", + "------\n", + "Summary for variable: SOMATIC_STATUS\n", + "Categorical Variable Summary:\n", + " Label: Matched, Count: 2021\n", + " Label: Unmatched, Count: 26\n", + "------\n" + ] + } + ], + "source": [ + "flexynesis.print_summary_stats(train_dataset)" + ] + }, + { + "cell_type": "code", + "execution_count": null, + "id": "997d1253-6f21-4de2-bbf8-7fdfb6255fbf", + "metadata": {}, + "outputs": [], + "source": [] + } + ], + "metadata": { + "kernelspec": { + "display_name": "flexynesis", + "language": "python", + "name": "flexynesis" + }, + "language_info": { + "codemirror_mode": { + "name": "ipython", + "version": 3 + }, + "file_extension": ".py", + "mimetype": "text/x-python", + "name": "python", + "nbconvert_exporter": "python", + "pygments_lexer": "ipython3", + "version": "3.11.0" + } + }, + "nbformat": 4, + "nbformat_minor": 5 +}