Search
About
Datasets
Models
Log In
Sign Up
Log In
Sign Up
Models
:
AlyssaS
/
COVIDPBMC
Like
0
Downloads: 1
Card
Git
Discussions
Commit
[8f36d5]
History
Initial commit
Authored by:
AlyssaS
2025-04-19
Browse code at this revision
Parent:
[6263dc]
Child:
[33bf40]
<<
<
1
2
3
4
>
>>
(Page 3 of 4)
added
B_cell/QC/BCR/021621_Cambridge_BCR_preprocessing.ipynb
added
B_cell/QC/BCR/112920_Newcastle_BCR_preprocessing.ipynb
added
B_cell/QC/BCR/121220_Sanger_BCR_preprocessing.ipynb
added
B_cell/QC/transcriptome/021821_NewcastleSangerCambridge_QC.ipynb
added
B_cell/README.md
added
B_cell/requirements.txt
added
Cydar/01_fastMNN_ADT.R
added
Cydar/02_CreateHyper.R
added
Cydar/03_Cydar_Figure.Rmd
added
Cydar/README.md
added
Initial_clustering/azimuth_plot.Rmd
added
Initial_clustering/azimuth_pred.csv
added
Initial_clustering/initial_rna_clustering_Fig_1B.py
added
LICENSE
added
Notebooks/DA_analysis-symptom_onset - Updated.Rmd
added
Notebooks/DA_analysis-symptom_onset.Rmd
added
README.md
added
TcellAnalysis/DEscripts/Compute_CellType_DE_Trend.R
added
TcellAnalysis/DEscripts/submit_DE.sh
added
TcellAnalysis/README.md
added
TcellAnalysis/TCRanalysis/submit_clonotype_TCR.sh
added
TcellAnalysis/TCRanalysis/tcr_clonotypes.R
added
TcellAnalysis/notebooks/All_TCR_clonotypes-Updated.Rmd
added
TcellAnalysis/notebooks/COVID19_DE_viz-Updated.Rmd
added
TcellAnalysis/notebooks/COVID19_Diffcorrelation_analyses.Rmd
B_cell/QC/BCR/021621_Cambridge_BCR_preprocessing.ipynb
Diff
Switch to side-by-side view
B_cell/QC/BCR/112920_Newcastle_BCR_preprocessing.ipynb
Diff
Switch to side-by-side view
B_cell/QC/BCR/121220_Sanger_BCR_preprocessing.ipynb
Diff
Switch to side-by-side view
B_cell/QC/transcriptome/021821_NewcastleSangerCambridge_QC.ipynb
Diff
Switch to side-by-side view
B_cell/README.md
Diff
Switch to side-by-side view
B_cell/requirements.txt
Diff
Switch to side-by-side view
Cydar/01_fastMNN_ADT.R
Diff
Switch to side-by-side view
Cydar/02_CreateHyper.R
Diff
Switch to side-by-side view
Cydar/03_Cydar_Figure.Rmd
Diff
Switch to side-by-side view
Cydar/README.md
Diff
Switch to side-by-side view
Initial_clustering/azimuth_plot.Rmd
Diff
Switch to side-by-side view
Initial_clustering/azimuth_pred.csv
Diff
Switch to side-by-side view
Initial_clustering/initial_rna_clustering_Fig_1B.py
Diff
Switch to side-by-side view
LICENSE
Diff
Switch to side-by-side view
Notebooks/DA_analysis-symptom_onset - Updated.Rmd
Diff
Switch to side-by-side view
Notebooks/DA_analysis-symptom_onset.Rmd
Diff
Switch to side-by-side view
README.md
Diff
Switch to side-by-side view
TcellAnalysis/DEscripts/Compute_CellType_DE_Trend.R
Diff
Switch to side-by-side view
TcellAnalysis/DEscripts/submit_DE.sh
Diff
Switch to side-by-side view
TcellAnalysis/README.md
Diff
Switch to side-by-side view
TcellAnalysis/TCRanalysis/submit_clonotype_TCR.sh
Diff
Switch to side-by-side view
TcellAnalysis/TCRanalysis/tcr_clonotypes.R
Diff
Switch to side-by-side view
TcellAnalysis/notebooks/All_TCR_clonotypes-Updated.Rmd
Diff
Switch to side-by-side view
TcellAnalysis/notebooks/COVID19_DE_viz-Updated.Rmd
Diff
Switch to side-by-side view
TcellAnalysis/notebooks/COVID19_Diffcorrelation_analyses.Rmd
Diff
Switch to side-by-side view
<<
<
1
2
3
4
>
>>
(Page 3 of 4)