Commit [8f36d5]

Initial commit

AlyssaS AlyssaS 2025-04-19

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added B_cell/QC/BCR/021621_Cambridge_BCR_preprocessing.ipynb
added B_cell/QC/BCR/112920_Newcastle_BCR_preprocessing.ipynb
added B_cell/QC/BCR/121220_Sanger_BCR_preprocessing.ipynb
added B_cell/QC/transcriptome/021821_NewcastleSangerCambridge_QC.ipynb
added B_cell/README.md
added B_cell/requirements.txt
added Cydar/01_fastMNN_ADT.R
added Cydar/02_CreateHyper.R
added Cydar/03_Cydar_Figure.Rmd
added Cydar/README.md
added Initial_clustering/azimuth_plot.Rmd
added Initial_clustering/azimuth_pred.csv
added Initial_clustering/initial_rna_clustering_Fig_1B.py
added LICENSE
added Notebooks/DA_analysis-symptom_onset - Updated.Rmd
added Notebooks/DA_analysis-symptom_onset.Rmd
added README.md
added TcellAnalysis/DEscripts/Compute_CellType_DE_Trend.R
added TcellAnalysis/DEscripts/submit_DE.sh
added TcellAnalysis/README.md
added TcellAnalysis/TCRanalysis/submit_clonotype_TCR.sh
added TcellAnalysis/TCRanalysis/tcr_clonotypes.R
added TcellAnalysis/notebooks/All_TCR_clonotypes-Updated.Rmd
added TcellAnalysis/notebooks/COVID19_DE_viz-Updated.Rmd
added TcellAnalysis/notebooks/COVID19_Diffcorrelation_analyses.Rmd
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LICENSE Diff Switch to side-by-side view
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