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COVID-19_Multi-Omics

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Commit [bd22c4] main

Initial commit

Authored by: AlyssaS 2025-04-19

Browse code at this revision

Parent: [dedf4a]

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added	eda/JGM/classification_26_day_threshold/testset_predictions/lipidomics_testset_predictions.svg
added	eda/JGM/classification_26_day_threshold/testset_predictions/metabolomics_testset_predictions.svg
added	eda/JGM/classification_26_day_threshold/testset_predictions/proteomics_testset_predictions.svg
added	eda/JGM/classification_26_day_threshold/testset_predictions/transcriptomics_testset_predictions.svg
added	eda/JGM/classification_26_day_threshold/variable_importance/Table SX feature importance tables.xlsx
added	eda/JGM/classification_26_day_threshold/variable_importance/combined_feature_importance.csv
added	eda/JGM/classification_26_day_threshold/variable_importance/combined_feature_importance.svg
added	eda/JGM/classification_26_day_threshold/variable_importance/feature_importances_four_combined.svg
added	eda/JGM/classification_26_day_threshold/variable_importance/lipidomics_feature_importance.csv
added	eda/JGM/classification_26_day_threshold/variable_importance/lipidomics_feature_importance.svg
added	eda/JGM/classification_26_day_threshold/variable_importance/metabolomics_feature_importance.csv
added	eda/JGM/classification_26_day_threshold/variable_importance/metabolomics_feature_importance.svg
added	eda/JGM/classification_26_day_threshold/variable_importance/proteomics_feature_importance.csv
added	eda/JGM/classification_26_day_threshold/variable_importance/proteomics_feature_importance.svg
added	eda/JGM/classification_26_day_threshold/variable_importance/transcriptomics_feature_importance.csv
added	eda/JGM/classification_26_day_threshold/variable_importance/transcriptomics_feature_importance.svg
added	eda/JGM/covid_data.py
added	eda/JGM/get_proteomics_pval.R
added	eda/JGM/r2heatmap.svg
added	eda/JGM/regression_variable_importance.ipynb
added	eda/KAO/01_KAO_Establishing_connection_to_db_extracting_timeStamp.R
added	eda/KAO/02_KAO_Runorder_correction_for_GC_metabolomics_data.R
added	eda/KAO/03_KAO_Exploring_GC_feature_quality.R
added	eda/KAO/04_KAO_Exploring_GC_data_after_feature_filtering.R
added	eda/KAO/05_KAO_Batch_effects_in_lipidomics_data.R

eda/JGM/classification_26_day_threshold/testset_predictions/lipidomics_testset_predictions.svg Diff Switch to side-by-side view

eda/JGM/classification_26_day_threshold/testset_predictions/metabolomics_testset_predictions.svg Diff Switch to side-by-side view

eda/JGM/classification_26_day_threshold/testset_predictions/proteomics_testset_predictions.svg Diff Switch to side-by-side view

eda/JGM/classification_26_day_threshold/testset_predictions/transcriptomics_testset_predictions.svg Diff Switch to side-by-side view

eda/JGM/classification_26_day_threshold/variable_importance/Table SX feature importance tables.xlsx

Binary file was added.

eda/JGM/classification_26_day_threshold/variable_importance/combined_feature_importance.csv Diff Switch to side-by-side view

eda/JGM/classification_26_day_threshold/variable_importance/combined_feature_importance.svg Diff Switch to side-by-side view

eda/JGM/classification_26_day_threshold/variable_importance/feature_importances_four_combined.svg Diff Switch to side-by-side view

eda/JGM/classification_26_day_threshold/variable_importance/lipidomics_feature_importance.csv Diff Switch to side-by-side view

eda/JGM/classification_26_day_threshold/variable_importance/lipidomics_feature_importance.svg Diff Switch to side-by-side view

eda/JGM/classification_26_day_threshold/variable_importance/metabolomics_feature_importance.csv Diff Switch to side-by-side view

eda/JGM/classification_26_day_threshold/variable_importance/metabolomics_feature_importance.svg Diff Switch to side-by-side view

eda/JGM/classification_26_day_threshold/variable_importance/proteomics_feature_importance.csv Diff Switch to side-by-side view

eda/JGM/classification_26_day_threshold/variable_importance/proteomics_feature_importance.svg Diff Switch to side-by-side view

eda/JGM/classification_26_day_threshold/variable_importance/transcriptomics_feature_importance.csv Diff Switch to side-by-side view

eda/JGM/classification_26_day_threshold/variable_importance/transcriptomics_feature_importance.svg Diff Switch to side-by-side view

eda/JGM/covid_data.py Diff Switch to side-by-side view

eda/JGM/get_proteomics_pval.R Diff Switch to side-by-side view

eda/JGM/r2heatmap.svg Diff Switch to side-by-side view

eda/JGM/regression_variable_importance.ipynb Diff Switch to side-by-side view

eda/KAO/01_KAO_Establishing_connection_to_db_extracting_timeStamp.R Diff Switch to side-by-side view

eda/KAO/02_KAO_Runorder_correction_for_GC_metabolomics_data.R Diff Switch to side-by-side view

eda/KAO/03_KAO_Exploring_GC_feature_quality.R Diff Switch to side-by-side view

eda/KAO/04_KAO_Exploring_GC_data_after_feature_filtering.R Diff Switch to side-by-side view

eda/KAO/05_KAO_Batch_effects_in_lipidomics_data.R Diff Switch to side-by-side view

<< < 1 .. 3 4 5 6 7 8 > >> (Page 5 of 8)