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+++ b/eda/IJM/proteomics/README.md
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+# Notebooks and EDA for proteomics datasets
+
+1.0_get_rawfile_timestamps.py
+
+description: Generate rawfiles table for proteomics data
+Relevant Issue(s): NA
+date created: 5/23/20
+date last modified: 5/23/20
+input: "All_20200428_COVID_plasma_multiomics/Proteomics/COVID19 study single-shot DDA/*/*.raw"
+output:
+  - data/proteomics_raw_file_timestamps.tsv
+  - [proteomics_raw_file_timestamps.xlsx](https://docs.google.com/spreadsheets/d/1GftO-cTfZURquhVuCGQBXe3QcwwABnYW/edit#gid=1832301628)
+
+2.0_stack_proteomics_measurements.py
+
+description: Process and reshape data for proteomics_measurements table upload.
+Relevant Issue(s): NA
+date created: 5/24/20
+date last modified: 5/24/20
+input: 
+  - data/proteomics/proteomics_measurements_wide.xlsx
+output:
+  - data/proteomics/proteomics_raw_file_timestamps.tsv
+  - data/proteomics/proteomics_measurements.csv
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