Notebooks and EDA for metabolomics datasets

1.0_metabolomics_qc.ipynb

description:
1. Load data from SQLlite data base
2. Join metabolomics measurements and clinical metadata tables
3. Run PCA
4. Generate plot scores plot and color by ICU status
Relevant Issue(s): NA
date created: 5/12/20
date last modified: 5/19/20
input:
- sqlite_db: data/SQLite Database/Covid-19 Study DB.sqlite
output:
- NA

1.1_metabolomics_qc.ipynb

description: Same as 1.0_metabolomics_qc.ipynb but joins are pandas-centric and rawfiles 'keep' column filtered.
Relevant Issue(s): NA
date created: 5/19/20
date last modified: 5/19/20
input:
- sqlite_db: data/SQLite Database/Covid-19 Study DB.sqlite
output:
- NA