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COVID-19_Multi-Omics

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Commit [bd22c4] main

Initial commit

Authored by: AlyssaS 2025-04-19

Browse code at this revision

Parent: [dedf4a]

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added	eda/KAO/X5_KAO_Creating_new_lipidomics_table_to_match_original.R
added	eda/KAO/X6_KAO_Creating_pvalues_table.R
added	eda/KAO/X6_KAO_Creating_pvalues_table_response_to_reviewers.R
added	eda/KAO/X7_KAO_updating_metadata_biomolecule_id.R
added	eda/KAO/X8_KAO_transciptomics_table_upload.R
added	eda/KAO/X9_KAO_Adding_Yuchen's_pvalues_into_DB.R
added	eda/MNB/englert_ards_analysis/README
added	eda/MNB/englert_ards_analysis/englert_comparison.ipynb
added	eda/MNB/englert_ards_analysis/gene_sets/c2.cp.v7.1.symbols.gmt
added	eda/MNB/englert_ards_analysis/gene_sets/c5.bp.v7.1.symbols.gmt
added	eda/MNB/englert_ards_analysis/gene_sets/c5.mf.v7.1.symbols.gmt
added	eda/MNB/englert_ards_analysis/gene_sets/h.all.v7.1.symbols.gmt
added	eda/MNB/englert_ards_analysis/heatmap_from_de.py
added	eda/MNB/englert_ards_analysis/run_goseq.py
added	eda/MNB/multiomic_elastic_net/Snakefile
added	eda/MNB/multiomic_elastic_net/elastic_net_hospital_free_transcriptomic.py
added	eda/MNB/multiomic_elastic_net/raw_data/2020-06-10_lipidomics.tsv
added	eda/MNB/multiomic_elastic_net/raw_data/2020-06-10_proteomics.tsv
added	eda/MNB/multiomic_elastic_net/raw_data/2020-06-11_metabolomics.tsv
added	eda/MNB/multiomic_elastic_net/raw_data/proteomics_measurements_w_metadata.tsv
added	eda/MNB/multiomic_elastic_net/regression_hospital_free.py
added	eda/MNB/raw_data.tar.gz
added	eda/SAS/fastq_filtering/README.txt
added	eda/SAS/fastq_filtering/filter_refdata/chrM.50mers.txt
added	eda/SAS/fastq_filtering/filter_refdata/octamerRegExes.tab

eda/KAO/X5_KAO_Creating_new_lipidomics_table_to_match_original.R Diff Switch to side-by-side view

eda/KAO/X6_KAO_Creating_pvalues_table.R Diff Switch to side-by-side view

eda/KAO/X6_KAO_Creating_pvalues_table_response_to_reviewers.R Diff Switch to side-by-side view

eda/KAO/X7_KAO_updating_metadata_biomolecule_id.R Diff Switch to side-by-side view

eda/KAO/X8_KAO_transciptomics_table_upload.R Diff Switch to side-by-side view

eda/KAO/X9_KAO_Adding_Yuchen's_pvalues_into_DB.R Diff Switch to side-by-side view

eda/MNB/englert_ards_analysis/README Diff Switch to side-by-side view

eda/MNB/englert_ards_analysis/englert_comparison.ipynb Diff Switch to side-by-side view

eda/MNB/englert_ards_analysis/gene_sets/c2.cp.v7.1.symbols.gmt Diff Switch to side-by-side view

eda/MNB/englert_ards_analysis/gene_sets/c5.bp.v7.1.symbols.gmt Diff Switch to side-by-side view

eda/MNB/englert_ards_analysis/gene_sets/c5.mf.v7.1.symbols.gmt Diff Switch to side-by-side view

eda/MNB/englert_ards_analysis/gene_sets/h.all.v7.1.symbols.gmt Diff Switch to side-by-side view

eda/MNB/englert_ards_analysis/heatmap_from_de.py Diff Switch to side-by-side view

eda/MNB/englert_ards_analysis/run_goseq.py Diff Switch to side-by-side view

eda/MNB/multiomic_elastic_net/Snakefile Diff Switch to side-by-side view

eda/MNB/multiomic_elastic_net/elastic_net_hospital_free_transcriptomic.py Diff Switch to side-by-side view

eda/MNB/multiomic_elastic_net/raw_data/2020-06-10_lipidomics.tsv Diff Switch to side-by-side view

eda/MNB/multiomic_elastic_net/raw_data/2020-06-10_proteomics.tsv Diff Switch to side-by-side view

eda/MNB/multiomic_elastic_net/raw_data/2020-06-11_metabolomics.tsv Diff Switch to side-by-side view

eda/MNB/multiomic_elastic_net/raw_data/proteomics_measurements_w_metadata.tsv Diff Switch to side-by-side view

eda/MNB/multiomic_elastic_net/regression_hospital_free.py Diff Switch to side-by-side view

eda/MNB/raw_data.tar.gz

Binary file was added.

eda/SAS/fastq_filtering/README.txt Diff Switch to side-by-side view

eda/SAS/fastq_filtering/filter_refdata/chrM.50mers.txt Diff Switch to side-by-side view

eda/SAS/fastq_filtering/filter_refdata/octamerRegExes.tab Diff Switch to side-by-side view

<< < 1 .. 5 6 7 8 > >> (Page 7 of 8)