added	softwares_config/bowtie2_2.5.1.config
added	softwares_config/bwa_0.7.17.config
added	softwares_config/cutadapt_4.4.config
added	softwares_config/fastqc_0.11.9.config
added	softwares_config/featureCounts_2.0.3.config
added	softwares_config/hisat2_2.2.1.config
added	softwares_config/homer_4.11.config
added	softwares_config/htseq_2.0.1.config
added	softwares_config/info.list
added	softwares_config/macs2_2.2.8.config
added	softwares_config/meme_5.4.1.config
added	softwares_config/star_2.7.10.config
added	softwares_config/trimmomatic_0.39.config
added	softwares_database/STAR.txt
added	softwares_database/__init__.py
added	softwares_database/bowtie2.txt
added	softwares_database/bwa.txt
added	softwares_database/fastp.txt
added	softwares_database/macs2.txt
added	softwares_database/samtools.txt
added	src/__init__.py
added	src/agent.py
added	src/build_RAG_private.py
added	src/codellama-main/.circleci/config.yaml
added	src/codellama-main/.gitignore