--- a +++ b/examples/case1.1/config.yaml @@ -0,0 +1,13 @@ +data_list: [ './examples/case1.1/data/SRR1374921.fastq.gz: single-end mouse rna-seq reads, replicate 1 in LoGlu group', + './examples/case1.1/data/SRR1374922.fastq.gz: single-end mouse rna-seq reads, replicate 2 in LoGlu group', + './examples/case1.1/data/SRR1374923.fastq.gz: single-end mouse rna-seq reads, replicate 1 in HiGlu group', + './examples/case1.1/data/SRR1374924.fastq.gz: single-end mouse rna-seq reads, replicate 2 in HiGlu group', + './examples/case1.1/data/TruSeq3-SE.fa: trimming adapter', + './examples/case1.1/data/mm39.fa: mouse mm39 genome fasta', + './examples/case1.1/data/mm39.ncbiRefSeq.gtf: mouse mm39 genome annotation' ] +output_dir: './examples/case1.1/output' +goal_description: 'find the differentially expressed genes' +meta: + info: 'meta-data recorded by users for reference only' + title: 'The transcriptional landscape of mouse beta cells compared to human beta cells reveals notable species differences in long non-coding RNA and protein-coding gene expression, ' + url: 'https://pubmed.ncbi.nlm.nih.gov/25051960/' \ No newline at end of file