added	inst/templates/TemplateReportModule.Rmd
added	man/AMARETTO_CreateModuleData.Rd
added	man/AMARETTO_CreateRegulatorPrograms.Rd
added	man/AMARETTO_Download.Rd
added	man/AMARETTO_EvaluateTestSet.Rd
added	man/AMARETTO_ExportResults.Rd
added	man/AMARETTO_HTMLreport.Rd
added	man/AMARETTO_Initialize.Rd
added	man/AMARETTO_LarsenBased.Rd
added	man/AMARETTO_LearnRegulatoryProgramsLarsen.Rd
added	man/AMARETTO_Preprocess.Rd
added	man/AMARETTO_ReassignGenesToClusters.Rd
added	man/AMARETTO_Run.Rd
added	man/AMARETTO_VisualizeModule.Rd
added	man/BatchData.Rd
added	man/Beta.NA.Rd
added	man/ComBat_NoFiles.Rd
added	man/CreateRegulatorData.Rd
added	man/Driver_Genes.Rd
added	man/FindTranscriptionallyPredictive_CNV.Rd
added	man/GeneSetDescription.Rd
added	man/GmtFromModules.Rd
added	man/HyperGTestGeneEnrichment.Rd
added	man/L.Rd
added	man/Lambda_Sequence.Rd