--- a
+++ b/man/HyperGTestGeneEnrichment.Rd
@@ -0,0 +1,25 @@
+% Generated by roxygen2: do not edit by hand
+% Please edit documentation in R/amaretto_htmlreport.R
+\name{HyperGTestGeneEnrichment}
+\alias{HyperGTestGeneEnrichment}
+\title{Hyper Geometric Geneset Enrichement Test}
+\usage{
+HyperGTestGeneEnrichment(gmtfile, testgmtfile, NrCores,
+  ref.numb.genes = 45956)
+}
+\arguments{
+\item{gmtfile}{The gmt file with reference gene set.}
+
+\item{testgmtfile}{The gmt file with gene sets to test. In our case, the gmt file of the modules.}
+
+\item{NrCores}{Number of cores used for parallelization.}
+
+\item{ref.numb.genes}{The total number of genes teste, standard equal to 45 956 (MSIGDB standard).}
+}
+\value{
+result
+}
+\description{
+Calculates the p-values for unranked gene set enrichment based on two gmt files as input and the hyper geometric test.
+}
+\keyword{internal}