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b/man/HyperGTestGeneEnrichment.Rd |
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% Generated by roxygen2: do not edit by hand |
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% Please edit documentation in R/amaretto_htmlreport.R |
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\name{HyperGTestGeneEnrichment} |
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\alias{HyperGTestGeneEnrichment} |
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\title{Hyper Geometric Geneset Enrichement Test} |
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\usage{ |
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HyperGTestGeneEnrichment(gmtfile, testgmtfile, NrCores, |
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ref.numb.genes = 45956) |
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} |
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\arguments{ |
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\item{gmtfile}{The gmt file with reference gene set.} |
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\item{testgmtfile}{The gmt file with gene sets to test. In our case, the gmt file of the modules.} |
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\item{NrCores}{Number of cores used for parallelization.} |
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\item{ref.numb.genes}{The total number of genes teste, standard equal to 45 956 (MSIGDB standard).} |
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} |
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\value{ |
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result |
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} |
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\description{ |
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Calculates the p-values for unranked gene set enrichment based on two gmt files as input and the hyper geometric test. |
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} |
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\keyword{internal} |