% Generated by roxygen2: do not edit by hand

% Please edit documentation in R/amaretto_vizualize.R

\name{AMARETTO_VisualizeModule}

\alias{AMARETTO_VisualizeModule}

\title{AMARETTO_VisualizeModule}

\usage{

AMARETTO_VisualizeModule(AMARETTOinit, AMARETTOresults, ProcessedData,

  ModuleNr, show_row_names = FALSE, SAMPLE_annotation = NULL,

  ID = NULL, order_samples = NULL)

}

\arguments{

\item{AMARETTOinit}{List output from AMARETTO_Initialize().}

\item{AMARETTOresults}{List output from AMARETTO_Run().}

\item{ProcessedData}{List of processed input data}

\item{ModuleNr}{Module number to visualize}

\item{show_row_names}{If TRUE, row names will be shown on the plot.}

\item{SAMPLE_annotation}{Matrix or Dataframe with sample annotation}

\item{ID}{Column used as sample name}

\item{order_samples}{Order samples in heatmap by mean or by clustering}

}

\value{

result

}

\description{

Function to visualize the gene modules

}

\examples{

data('ProcessedDataLIHC')

AMARETTOinit <- AMARETTO_Initialize(ProcessedData = ProcessedDataLIHC,

                                    NrModules = 2, VarPercentage = 50)

AMARETTOresults <- AMARETTO_Run(AMARETTOinit)

AMARETTO_VisualizeModule(AMARETTOinit = AMARETTOinit,AMARETTOresults = AMARETTOresults,

                         ProcessedData = ProcessedDataLIHC, ModuleNr = 1)

}