--- a
+++ b/man/AMARETTO_VisualizeModule.Rd
@@ -0,0 +1,43 @@
+% Generated by roxygen2: do not edit by hand
+% Please edit documentation in R/amaretto_vizualize.R
+\name{AMARETTO_VisualizeModule}
+\alias{AMARETTO_VisualizeModule}
+\title{AMARETTO_VisualizeModule}
+\usage{
+AMARETTO_VisualizeModule(AMARETTOinit, AMARETTOresults, ProcessedData,
+  ModuleNr, show_row_names = FALSE, SAMPLE_annotation = NULL,
+  ID = NULL, order_samples = NULL)
+}
+\arguments{
+\item{AMARETTOinit}{List output from AMARETTO_Initialize().}
+
+\item{AMARETTOresults}{List output from AMARETTO_Run().}
+
+\item{ProcessedData}{List of processed input data}
+
+\item{ModuleNr}{Module number to visualize}
+
+\item{show_row_names}{If TRUE, row names will be shown on the plot.}
+
+\item{SAMPLE_annotation}{Matrix or Dataframe with sample annotation}
+
+\item{ID}{Column used as sample name}
+
+\item{order_samples}{Order samples in heatmap by mean or by clustering}
+}
+\value{
+result
+}
+\description{
+Function to visualize the gene modules
+}
+\examples{
+data('ProcessedDataLIHC')
+AMARETTOinit <- AMARETTO_Initialize(ProcessedData = ProcessedDataLIHC,
+                                    NrModules = 2, VarPercentage = 50)
+
+AMARETTOresults <- AMARETTO_Run(AMARETTOinit)
+
+AMARETTO_VisualizeModule(AMARETTOinit = AMARETTOinit,AMARETTOresults = AMARETTOresults,
+                         ProcessedData = ProcessedDataLIHC, ModuleNr = 1)
+}