% Generated by roxygen2: do not edit by hand

% Please edit documentation in R/amaretto_functions.R

\name{AMARETTO_Run}

\alias{AMARETTO_Run}

\title{AMARETTO_Run

Function to run AMARETTO, a statistical algorithm to identify cancer drivers by integrating a variety of omics data from cancer and normal tissue.}

\usage{

AMARETTO_Run(AMARETTOinit)

}

\arguments{

\item{AMARETTOinit}{List output from AMARETTO_Initialize().}

}

\value{

result

}

\description{

AMARETTO_Run

Function to run AMARETTO, a statistical algorithm to identify cancer drivers by integrating a variety of omics data from cancer and normal tissue.

}

\examples{

data('ProcessedDataLIHC')

AMARETTOinit <- AMARETTO_Initialize(ProcessedData = ProcessedDataLIHC,

                                    NrModules = 2, VarPercentage = 50)

AMARETTOresults <- AMARETTO_Run(AMARETTOinit)

}