--- a
+++ b/man/AMARETTO_Run.Rd
@@ -0,0 +1,25 @@
+% Generated by roxygen2: do not edit by hand
+% Please edit documentation in R/amaretto_functions.R
+\name{AMARETTO_Run}
+\alias{AMARETTO_Run}
+\title{AMARETTO_Run
+Function to run AMARETTO, a statistical algorithm to identify cancer drivers by integrating a variety of omics data from cancer and normal tissue.}
+\usage{
+AMARETTO_Run(AMARETTOinit)
+}
+\arguments{
+\item{AMARETTOinit}{List output from AMARETTO_Initialize().}
+}
+\value{
+result
+}
+\description{
+AMARETTO_Run
+Function to run AMARETTO, a statistical algorithm to identify cancer drivers by integrating a variety of omics data from cancer and normal tissue.
+}
+\examples{
+data('ProcessedDataLIHC')
+AMARETTOinit <- AMARETTO_Initialize(ProcessedData = ProcessedDataLIHC,
+                                    NrModules = 2, VarPercentage = 50)
+AMARETTOresults <- AMARETTO_Run(AMARETTOinit)
+}