% Generated by roxygen2: do not edit by hand

% Please edit documentation in R/amaretto_preprocess.R

\name{AMARETTO_Preprocess}

\alias{AMARETTO_Preprocess}

\title{AMARETTO_Preprocess}

\usage{

AMARETTO_Preprocess(DataSetDirectories = DataSetDirectories,

  BatchData = BatchData)

}

\arguments{

\item{DataSetDirectories}{DataSetDirectories}

\item{BatchData}{BatchData}

}

\value{

result

}

\description{

Wrapper code that analyzes process TCGA GISTIC (CNV) and gene expression (rna-seq or microarray) data  via one call

}

\examples{

\dontrun{

TargetDirectory <-  "Downloads"  # path to data download directory

CancerSite <- 'CHOL'

DataSetDirectories <- AMARETTO_Download(CancerSite,TargetDirectory)

ProcessedData <- AMARETTO_Preprocess(DataSetDirectories,BatchData)

}

}