% Generated by roxygen2: do not edit by hand

% Please edit documentation in R/amaretto_download.R

\name{AMARETTO_ExportResults}

\alias{AMARETTO_ExportResults}

\title{AMARETTO_ExportResults}

\usage{

AMARETTO_ExportResults(AMARETTOinit, AMARETTOresults, data_address,

  Heatmaps = TRUE, CNV_matrix = NULL, MET_matrix = NULL)

}

\arguments{

\item{AMARETTOinit}{AMARETTO initialize output}

\item{AMARETTOresults}{AMARETTO results output}

\item{data_address}{Directory to save data folder}

\item{Heatmaps}{Output heatmaps as pdf}

\item{CNV_matrix}{CNV_matrix}

\item{MET_matrix}{MET_matrix}

}

\value{

result

}

\description{

Retrieve a download of all the data linked with the run (including heatmaps)

}

\examples{

data('ProcessedDataLIHC')

TargetDirectory <- file.path(getwd(),"Downloads/");dir.create(TargetDirectory)

AMARETTOinit <- AMARETTO_Initialize(ProcessedData = ProcessedDataLIHC,

                                    NrModules = 2, VarPercentage = 50)

AMARETTOresults <- AMARETTO_Run(AMARETTOinit)

AMARETTO_ExportResults(AMARETTOinit,AMARETTOresults,TargetDirectory,Heatmaps = FALSE)

}