% Generated by roxygen2: do not edit by hand

% Please edit documentation in R/amaretto_functions.R

\name{AMARETTO_EvaluateTestSet}

\alias{AMARETTO_EvaluateTestSet}

\title{AMARETTO_EvaluateTestSet}

\usage{

AMARETTO_EvaluateTestSet(AMARETTOresults = AMARETTOresults,

  MA_Data_TestSet = MA_Data_TestSet,

  RegulatorData_TestSet = RegulatorData_TestSet)

}

\arguments{

\item{AMARETTOresults}{AMARETTO output from AMARETTO_Run().}

\item{MA_Data_TestSet}{Gene expression matrix from a test set (that was not used in AMARETTO_Run()).}

\item{RegulatorData_TestSet}{Test regulator data from CreateRegulatorData().}

}

\value{

result

}

\description{

Code to evaluate AMARETTO on a new gene expression test set. Uses output from AMARETTO_Run() and CreateRegulatorData().

}

\examples{

data('ProcessedDataLIHC')

AMARETTOinit <- AMARETTO_Initialize(ProcessedData = ProcessedDataLIHC,

                                    NrModules = 2, VarPercentage = 50)

AMARETTOresults <- AMARETTO_Run(AMARETTOinit)

AMARETTOtestReport <- AMARETTO_EvaluateTestSet(AMARETTOresults = AMARETTOresults,

                                               MA_Data_TestSet = AMARETTOinit$MA_matrix_Var,

                                               RegulatorData_TestSet = AMARETTOinit$RegulatorData)

}