--- a
+++ b/man/AMARETTO_EvaluateTestSet.Rd
@@ -0,0 +1,33 @@
+% Generated by roxygen2: do not edit by hand
+% Please edit documentation in R/amaretto_functions.R
+\name{AMARETTO_EvaluateTestSet}
+\alias{AMARETTO_EvaluateTestSet}
+\title{AMARETTO_EvaluateTestSet}
+\usage{
+AMARETTO_EvaluateTestSet(AMARETTOresults = AMARETTOresults,
+  MA_Data_TestSet = MA_Data_TestSet,
+  RegulatorData_TestSet = RegulatorData_TestSet)
+}
+\arguments{
+\item{AMARETTOresults}{AMARETTO output from AMARETTO_Run().}
+
+\item{MA_Data_TestSet}{Gene expression matrix from a test set (that was not used in AMARETTO_Run()).}
+
+\item{RegulatorData_TestSet}{Test regulator data from CreateRegulatorData().}
+}
+\value{
+result
+}
+\description{
+Code to evaluate AMARETTO on a new gene expression test set. Uses output from AMARETTO_Run() and CreateRegulatorData().
+}
+\examples{
+data('ProcessedDataLIHC')
+AMARETTOinit <- AMARETTO_Initialize(ProcessedData = ProcessedDataLIHC,
+                                    NrModules = 2, VarPercentage = 50)
+
+AMARETTOresults <- AMARETTO_Run(AMARETTOinit)
+AMARETTOtestReport <- AMARETTO_EvaluateTestSet(AMARETTOresults = AMARETTOresults,
+                                               MA_Data_TestSet = AMARETTOinit$MA_matrix_Var,
+                                               RegulatorData_TestSet = AMARETTOinit$RegulatorData)
+}