--- a +++ b/inst/templates/TemplateReportModule.Rmd @@ -0,0 +1,63 @@ +--- +title: <center>AMARETTO Regulatory Module `r toString(ModuleNr)` Report</center> +output: + html_document: + theme: cerulean + highlight: NULL +--- + +<style> + .main-container { + max-width: 100% !important; + padding-right: 1% !important; + padding-left: 1% !important; + margin-right: 1% !important; + margin-left: 1% !important; + } +</style> + +<center> +<br><br> +<a href="../index.html"><button type="button" class="btn btn-primary">Index Page</button></a> +<br><br> + +## Regulatory Module Heatmap Visualization +<br><br><br> +```{r moduleheatmap, echo=FALSE, fig.height = 12, fig.width = 16, fig.align = "center"} +heatmap_module +``` +<br><br><br> + +## Activator and Repressor Driver Genes in Regulatory Module +<br><br><br> +```{r regulators, echo=FALSE} +dt_regulators +``` +<br><br><br> + +## Target Genes in Regulatory Module +<br><br><br> +```{r targets, echo=FALSE} +dt_targets +``` +<br><br><br> + +## Enrichments of Functional Categories in Regulatory Module +<br><br><br> +```{r geneset, echo=FALSE,out.width='25%'} +dt_genesets +``` + +<br><br><br> +<!-- +## Associations of Phenotypes to Regulatory Module + +<br><br><br> + +```{r module_Phenotypes,echo=FALSE} +module_phenotype_association_datatable +``` + +<br><br><br> +--> +</center>