a b/inst/templates/TemplateReportModule.Rmd
1
---
2
title: <center>AMARETTO Regulatory Module `r toString(ModuleNr)` Report</center>
3
output: 
4
  html_document:
5
    theme: cerulean
6
    highlight: NULL
7
---
8
9
<style>
10
  .main-container {
11
    max-width:  100% !important;
12
    padding-right: 1% !important;
13
    padding-left: 1% !important;
14
    margin-right: 1% !important;
15
    margin-left: 1% !important;
16
  }
17
</style>
18
19
<center>
20
<br><br>
21
<a href="../index.html"><button type="button"  class="btn btn-primary">Index Page</button></a>
22
<br><br>
23
24
## Regulatory Module Heatmap Visualization
25
<br><br><br>
26
```{r moduleheatmap, echo=FALSE, fig.height = 12, fig.width = 16, fig.align = "center"}
27
heatmap_module
28
```
29
<br><br><br>
30
31
## Activator and Repressor Driver Genes in Regulatory Module
32
<br><br><br>
33
```{r regulators, echo=FALSE}
34
dt_regulators
35
```
36
<br><br><br>
37
38
## Target Genes in Regulatory Module
39
<br><br><br>
40
```{r targets, echo=FALSE}
41
dt_targets
42
```
43
<br><br><br>
44
45
## Enrichments of Functional Categories in Regulatory Module
46
<br><br><br>
47
```{r geneset, echo=FALSE,out.width='25%'}
48
dt_genesets
49
```
50
51
<br><br><br>
52
<!--
53
## Associations of Phenotypes to Regulatory Module
54
55
<br><br><br>
56
57
```{r module_Phenotypes,echo=FALSE}
58
module_phenotype_association_datatable
59
```
60
61
<br><br><br>
62
-->
63
</center>