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b/inst/templates/TemplateReportModule.Rmd |
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--- |
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title: <center>AMARETTO Regulatory Module `r toString(ModuleNr)` Report</center> |
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output: |
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html_document: |
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theme: cerulean |
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highlight: NULL |
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--- |
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<style> |
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.main-container { |
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max-width: 100% !important; |
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padding-right: 1% !important; |
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padding-left: 1% !important; |
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margin-right: 1% !important; |
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margin-left: 1% !important; |
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} |
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</style> |
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<center> |
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<br><br> |
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<a href="../index.html"><button type="button" class="btn btn-primary">Index Page</button></a> |
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<br><br> |
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## Regulatory Module Heatmap Visualization |
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<br><br><br> |
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```{r moduleheatmap, echo=FALSE, fig.height = 12, fig.width = 16, fig.align = "center"} |
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heatmap_module |
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``` |
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<br><br><br> |
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## Activator and Repressor Driver Genes in Regulatory Module |
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<br><br><br> |
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```{r regulators, echo=FALSE} |
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dt_regulators |
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``` |
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<br><br><br> |
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## Target Genes in Regulatory Module |
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<br><br><br> |
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```{r targets, echo=FALSE} |
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dt_targets |
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``` |
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<br><br><br> |
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## Enrichments of Functional Categories in Regulatory Module |
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<br><br><br> |
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```{r geneset, echo=FALSE,out.width='25%'} |
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dt_genesets |
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``` |
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<br><br><br> |
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<!-- |
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## Associations of Phenotypes to Regulatory Module |
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<br><br><br> |
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```{r module_Phenotypes,echo=FALSE} |
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module_phenotype_association_datatable |
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``` |
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<br><br><br> |
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--> |
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</center> |