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title: <center>AMARETTO Report</center>

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<center>

## Run Information

<br>

Number of Samples in Gene Expression Data = `r nExp`  

Number of Samples in DNA Copy Number Data = `r nCNV`  

Number of Samples in DNA Methylation Data = `r nMET`  

Number of `r VarPercentage`% most variable Genes = `r nGenes`  

Number of Regulatory Modules = `r nMod`  

<br><br>

## Overview of Regulatory Modules

<br><br><br>

```{r Modules,echo=FALSE}

dt_overview

```

<br><br><br>

## Assignments of Genes to Regulatory Modules

<br><br><br>

```{r Genes,echo=FALSE}

dt_genes

```

<br><br><br>

## Enrichments of Functional Categories in Regulatory Modules

<br><br><br>

```{r Genesets,echo=FALSE}

dt_genesetsall

```

<br><br><br>

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## Associations of Phenotypes to Regulatory Modules

<br><br><br>

```{r Phenotypes,echo=FALSE}

phenotype_association_datatable

```

<br><br><br>

-->

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