added	.Rbuildignore
added	.gitignore
added	AMARETTO_EXAMPLE/AMARETTO.R
added	DESCRIPTION
added	LICENSE
added	NAMESPACE
added	NEWS
added	R/amaretto_download.R
added	R/amaretto_functions.R
added	R/amaretto_htmlreport.R
added	R/amaretto_initialize.R
added	R/amaretto_preprocess.R
added	R/amaretto_run.R
added	R/amaretto_vizualize.R
added	R/data.R
added	README.md
added	data/BatchData.rda
added	data/Driver_Genes.rdata
added	data/MsigdbMapping.rda
added	data/ProcessedDataLIHC.rda
added	inst/extdata/MethylStates.rda
added	inst/extdata/Module1_LIHC.png
added	inst/extdata/logo.jpg
added	inst/templates/H.C2CP.genesets.gmt
added	inst/templates/TemplateIndexPage.Rmd