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# A chronological map of 308 physical and mental health conditions from 4 million patients
[](https://zenodo.org/badge/latestdoi/175040221)
Machine-readable versions (CSV files) of electronic health record phenotyping algorithms for Kuan V., Denaxas S., Gonzalez-Izquierdo A. et al. _A chronological map of 308 physical and mental health conditions from 4 million individuals in the National Health Service_ published in the Lancet Digital Health - DOI <a href="https://www.thelancet.com/journals/landig/article/PIIS2589-7500(19)30012-3/fulltext">10.1016/S2589-7500(19)30012-3</a>
The phenotypes are defined across multiple controlled clinical terminologies depending on the source dataset used:
| Dataset | Contents | Terminology |
|---------|----------|-------------|
| CPRD GOLD | Longitudinal primary care records | Read V2 |
| HES APC | Admitted patient hospitalization episodes | ICD-10 |
| ONS Deaths | National death registrations | ICD-10 |
More information and implementation details for algorithms located on the CALIBER Portal: https://www.caliberresearch.org/portal/phenotypes/chronological-map
_Note_: GitHub has a hardcoded file limit when rendering markdown files; as a result, this file is truncated when viewed on github.com (download it localy to render the entire contents properly).
<h2>Abdominal Hernia</h2>
<h4>Implementation</h4>
~~~
At the specified date, a patient is defined as having had 'Abdominal Hernia' IF they meet the criteria for any of the following on or before the specified date. The earliest date on which the individual meets any of the following criteria on or before the specified date is defined as the first event date:
Primary care
1. 'Abdominal Hernia' diagnosis or history of diagnosis or procedure during a consultation
OR
Secondary care
1. ALL diagnoses of 'Abdominal Hernia' or history of diagnosis during a hospitalization
OR
Secondary care (OPCS4)
1. ALL procedures for 'Abdominal Hernia' during a hospitalization
~~~
<h4>Primary care (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//primary_care/CPRD_hernia_abdo.csv'>CPRD_hernia_abdo.csv</a>)</h4>
<table>
<thead>
<tr>
<th>Read code</th>
<th>Read Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left">14C3.00</td>
<td align="left">H/O: abdominal hernia</td>
</tr>
<tr>
<td align="left">25P2.00</td>
<td align="left">O/E - reducible hernia</td>
</tr>
<tr>
<td align="left">25P..12</td>
<td align="left">O/E - hernia</td>
</tr>
<tr>
<td align="left">25P3.00</td>
<td align="left">O/E - irreducible hernia</td>
</tr>
<tr>
<td align="left">25P4.00</td>
<td align="left">O/E - strangulated hernia</td>
</tr>
<tr>
<td align="left">25P5.00</td>
<td align="left">O/E-hernia-cough impulse shown</td>
</tr>
<tr>
<td align="left">25P6.00</td>
<td align="left">O/E-hernia descends to scrotum</td>
</tr>
<tr>
<td align="left">7H10.00</td>
<td align="left">Simple excision of inguinal hernial sac</td>
</tr>
<tr>
<td align="left">7H10y00</td>
<td align="left">Other specified simple excision of inguinal hernial sac</td>
</tr>
<tr>
<td align="left">7H10z00</td>
<td align="left">Simple excision of inguinal hernial sac NOS</td>
</tr>
<tr>
<td align="left">7H11000</td>
<td align="left">Primary repair inguinal hernia using insert natural material</td>
</tr>
<tr>
<td align="left">7H11100</td>
<td align="left">Prim repair inguinal hernia using insert prosthet material</td>
</tr>
<tr>
<td align="left">7H11111</td>
<td align="left">Primary mesh repair of inguinal hernia</td>
</tr>
<tr>
<td align="left">7H11200</td>
<td align="left">Primary repair of inguinal hernia using sutures</td>
</tr>
<tr>
<td align="left">7H11211</td>
<td align="left">Bassini repair of inguinal hernia</td>
</tr>
<tr>
<td align="left">7H11212</td>
<td align="left">Ferguson repair of inguinal hernia</td>
</tr>
<tr>
<td align="left">7H11213</td>
<td align="left">McVay repair of inguinal hernia</td>
</tr>
<tr>
<td align="left">7H11214</td>
<td align="left">Shouldice repair of inguinal hernia</td>
</tr>
<tr>
<td align="left">7H11300</td>
<td align="left">Primary repair inguinal hernia & reduction of sliding hernia</td>
</tr>
<tr>
<td align="left">7H11400</td>
<td align="left">Endoscopic primary repair of inguinal hernia</td>
</tr>
<tr>
<td align="left">7H11500</td>
<td align="left">Bilateral inguinal hernia repair</td>
</tr>
<tr>
<td align="left">7H11600</td>
<td align="left">Primary laparoscopic repair of inguinal hernia</td>
</tr>
<tr>
<td align="left">7H11.00</td>
<td align="left">Primary repair of inguinal hernia</td>
</tr>
<tr>
<td align="left">7H11y00</td>
<td align="left">Other specified primary repair of inguinal hernia</td>
</tr>
<tr>
<td align="left">7H11y11</td>
<td align="left">Halsted repair of inguinal hernia</td>
</tr>
<tr>
<td align="left">7H11z00</td>
<td align="left">Primary repair of inguinal hernia NOS</td>
</tr>
<tr>
<td align="left">7H12000</td>
<td align="left">Repair recurr inguinal hernia using insert natural material</td>
</tr>
<tr>
<td align="left">7H12100</td>
<td align="left">Repair recurr inguinal hernia using insert prosthet material</td>
</tr>
<tr>
<td align="left">7H12200</td>
<td align="left">Repair of recurrent inguinal hernia using sutures</td>
</tr>
<tr>
<td align="left">7H12300</td>
<td align="left">Removal prosthet material fr previous repair inguinal hernia</td>
</tr>
<tr>
<td align="left">7H12.00</td>
<td align="left">Repair of recurrent inguinal hernia</td>
</tr>
<tr>
<td align="left">7H12.11</td>
<td align="left">Herniorrhaphy for recurrent inguinal hernia</td>
</tr>
<tr>
<td align="left">7H12y00</td>
<td align="left">Other specified repair of recurrent inguinal hernia</td>
</tr>
<tr>
<td align="left">7H12z00</td>
<td align="left">Repair of recurrent inguinal hernia NOS</td>
</tr>
<tr>
<td align="left">7H13000</td>
<td align="left">Primary repair femoral hernia using insert natural material</td>
</tr>
<tr>
<td align="left">7H13100</td>
<td align="left">Primary repair femoral hernia using insert prosthet material</td>
</tr>
<tr>
<td align="left">7H13200</td>
<td align="left">Primary repair of femoral hernia using sutures</td>
</tr>
<tr>
<td align="left">7H13211</td>
<td align="left">Cheadle repair of femoral hernia</td>
</tr>
<tr>
<td align="left">7H13212</td>
<td align="left">Henry repair of femoral hernia</td>
</tr>
<tr>
<td align="left">7H13213</td>
<td align="left">Lockwood repair of femoral hernia</td>
</tr>
<tr>
<td align="left">7H13214</td>
<td align="left">Lotheissen repair of femoral hernia</td>
</tr>
<tr>
<td align="left">7H13215</td>
<td align="left">McEvedy repair of femoral hernia</td>
</tr>
<tr>
<td align="left">7H13300</td>
<td align="left">Endoscopic primary repair of femoral hernia</td>
</tr>
<tr>
<td align="left">7H13.00</td>
<td align="left">Primary repair of femoral hernia</td>
</tr>
<tr>
<td align="left">7H13.11</td>
<td align="left">Femoral hernia repair NEC</td>
</tr>
<tr>
<td align="left">7H13y00</td>
<td align="left">Other specified primary repair of femoral hernia</td>
</tr>
<tr>
<td align="left">7H13z00</td>
<td align="left">Primary repair of femoral hernia NOS</td>
</tr>
<tr>
<td align="left">7H14100</td>
<td align="left">Repair recurr femoral hernia using insert prosthet material</td>
</tr>
<tr>
<td align="left">7H14200</td>
<td align="left">Repair of recurrent femoral hernia using sutures</td>
</tr>
<tr>
<td align="left">7H14300</td>
<td align="left">Removal prosthet material fr previous repair femoral hernia</td>
</tr>
<tr>
<td align="left">7H14.00</td>
<td align="left">Repair of recurrent femoral hernia</td>
</tr>
<tr>
<td align="left">7H14.11</td>
<td align="left">Herniorrhaphy for recurrent femoral hernia</td>
</tr>
<tr>
<td align="left">7H14y00</td>
<td align="left">Other specified repair of recurrent femoral hernia</td>
</tr>
<tr>
<td align="left">7H14z00</td>
<td align="left">Repair of recurrent femoral hernia NOS</td>
</tr>
<tr>
<td align="left">7H15000</td>
<td align="left">Repair of umbilical hernia using insert of natural material</td>
</tr>
<tr>
<td align="left">7H15100</td>
<td align="left">Repair umbilical hernia using insert of prosthetic material</td>
</tr>
<tr>
<td align="left">7H15200</td>
<td align="left">Repair of umbilical hernia using sutures</td>
</tr>
<tr>
<td align="left">7H15300</td>
<td align="left">Remov prosthet material fr previous repair umbilical hernia</td>
</tr>
<tr>
<td align="left">7H15.00</td>
<td align="left">Repair of umbilical hernia</td>
</tr>
<tr>
<td align="left">7H15y00</td>
<td align="left">Other specified repair of umbilical hernia</td>
</tr>
<tr>
<td align="left">7H15z00</td>
<td align="left">Repair of umbilical hernia NOS</td>
</tr>
<tr>
<td align="left">7H16000</td>
<td align="left">Prim repair incisional hernia using insert natural material</td>
</tr>
<tr>
<td align="left">7H16100</td>
<td align="left">Prim repair incisional hernia using insert prosthet material</td>
</tr>
<tr>
<td align="left">7H16111</td>
<td align="left">Primary mesh repair of incisional hernia</td>
</tr>
<tr>
<td align="left">7H16200</td>
<td align="left">Primary repair of incisional hernia using sutures</td>
</tr>
<tr>
<td align="left">7H16.00</td>
<td align="left">Primary repair of incisional hernia</td>
</tr>
<tr>
<td align="left">7H16y00</td>
<td align="left">Other specified primary repair of incisional hernia</td>
</tr>
<tr>
<td align="left">7H16z00</td>
<td align="left">Primary repair of incisional hernia NOS</td>
</tr>
<tr>
<td align="left">7H17000</td>
<td align="left">Repair recurr incision hernia using insert natural material</td>
</tr>
<tr>
<td align="left">7H17100</td>
<td align="left">Repair recurr incision hernia using insert prosthet material</td>
</tr>
<tr>
<td align="left">7H17200</td>
<td align="left">Repair of recurrent incisional hernia using sutures</td>
</tr>
<tr>
<td align="left">7H17300</td>
<td align="left">Removal prosthetic material fr prev repair incisional hernia</td>
</tr>
<tr>
<td align="left">7H17.00</td>
<td align="left">Repair of recurrent incisional hernia</td>
</tr>
<tr>
<td align="left">7H17.11</td>
<td align="left">Herniorrhaphy for recurrent incisional hernia</td>
</tr>
<tr>
<td align="left">7H17y00</td>
<td align="left">Other specified repair of recurrent incisional hernia</td>
</tr>
<tr>
<td align="left">7H17z00</td>
<td align="left">Repair of recurrent incisional hernia NOS</td>
</tr>
<tr>
<td align="left">7H18000</td>
<td align="left">Repair of ventral hernia using insert of natural material</td>
</tr>
<tr>
<td align="left">7H18100</td>
<td align="left">Repair of ventral hernia using insert of prosthetic material</td>
</tr>
<tr>
<td align="left">7H18200</td>
<td align="left">Repair of ventral hernia using sutures</td>
</tr>
<tr>
<td align="left">7H18300</td>
<td align="left">Removal prosthet material fr previous repair ventral hernia</td>
</tr>
<tr>
<td align="left">7H18400</td>
<td align="left">Repair of epigastric hernia, unspecified</td>
</tr>
<tr>
<td align="left">7H18.00</td>
<td align="left">Repair of other hernia of abdominal wall</td>
</tr>
<tr>
<td align="left">7H18.11</td>
<td align="left">Repair of other ventral hernia</td>
</tr>
<tr>
<td align="left">7H18y00</td>
<td align="left">Other specified repair of other hernia of abdominal wall</td>
</tr>
<tr>
<td align="left">7H18z00</td>
<td align="left">Repair of other hernia of abdominal wall NOS</td>
</tr>
<tr>
<td align="left">7H1C000</td>
<td align="left">Primary rep umbilical hernia using insert natural material</td>
</tr>
<tr>
<td align="left">7H1C100</td>
<td align="left">Prim rep umbilical hernia using insert prosthetic material</td>
</tr>
<tr>
<td align="left">7H1C200</td>
<td align="left">Primary repair of umbilical hernia using sutures</td>
</tr>
<tr>
<td align="left">7H1C300</td>
<td align="left">Remov prosthet material fr previous repair umbilical hernia</td>
</tr>
<tr>
<td align="left">7H1C.00</td>
<td align="left">Primary repair of umbilical hernia</td>
</tr>
<tr>
<td align="left">7H1Cy00</td>
<td align="left">Other specified primary repair of umbilical hernia</td>
</tr>
<tr>
<td align="left">7H1Cz00</td>
<td align="left">Primary repair of umbilical hernia NOS</td>
</tr>
<tr>
<td align="left">7H1D100</td>
<td align="left">Repair recurrent umbilical hernia us insert prosthetic mater</td>
</tr>
<tr>
<td align="left">7H1D200</td>
<td align="left">Repair of recurrent umbilical hernia using sutures</td>
</tr>
<tr>
<td align="left">7H1D.00</td>
<td align="left">Repair of recurrent umbilical hernia</td>
</tr>
<tr>
<td align="left">7H1Dy00</td>
<td align="left">Other specified repair of recurrent umbilical hernia</td>
</tr>
<tr>
<td align="left">7H1Dz00</td>
<td align="left">Repair of recurrent umbilical hernia NOS</td>
</tr>
<tr>
<td align="left">7H1E000</td>
<td align="left">Repair recur ventral hernia using insert natural material</td>
</tr>
<tr>
<td align="left">7H1E100</td>
<td align="left">Repair recurrent ventral hernia insert prosthetic material</td>
</tr>
<tr>
<td align="left">7H1E200</td>
<td align="left">Repair of recurrent ventral hernia using sutures</td>
</tr>
<tr>
<td align="left">7H1E.00</td>
<td align="left">Repair of recurrent other hernia of abdominal wall</td>
</tr>
<tr>
<td align="left">7H1Ey00</td>
<td align="left">Other specified repair recurrent other hernia abdominal wall</td>
</tr>
<tr>
<td align="left">7H1Ez00</td>
<td align="left">Repair of recurrent other hernia of abdominal wall NOS</td>
</tr>
<tr>
<td align="left">82B2.00</td>
<td align="left">Manual reduction of hernia</td>
</tr>
<tr>
<td align="left">J300000</td>
<td align="left">Unilateral inguinal hernia with gangrene</td>
</tr>
<tr>
<td align="left">J300300</td>
<td align="left">Bilateral recurrent inguinal hernia with gangrene</td>
</tr>
<tr>
<td align="left">J300.00</td>
<td align="left">Inguinal hernia with gangrene</td>
</tr>
<tr>
<td align="left">J300z00</td>
<td align="left">Inguinal hernia with gangrene NOS</td>
</tr>
<tr>
<td align="left">J301000</td>
<td align="left">Unilateral inguinal hernia with obstruction</td>
</tr>
<tr>
<td align="left">J301100</td>
<td align="left">Unilateral recurrent inguinal hernia with obstruction</td>
</tr>
<tr>
<td align="left">J301200</td>
<td align="left">Bilateral inguinal hernia with obstruction</td>
</tr>
<tr>
<td align="left">J301.00</td>
<td align="left">Inguinal hernia with obstruction</td>
</tr>
<tr>
<td align="left">J301z00</td>
<td align="left">Inguinal hernia with obstruction NOS</td>
</tr>
<tr>
<td align="left">J302000</td>
<td align="left">Unilateral inguinal hernia - irreducible</td>
</tr>
<tr>
<td align="left">J302100</td>
<td align="left">Unilateral recurrent inguinal hernia - irreducible</td>
</tr>
<tr>
<td align="left">J302200</td>
<td align="left">Bilateral inguinal hernia - irreducible</td>
</tr>
<tr>
<td align="left">J302300</td>
<td align="left">Bilateral recurrent inguinal hernia - irreducible</td>
</tr>
<tr>
<td align="left">J302.00</td>
<td align="left">Inguinal hernia - irreducible</td>
</tr>
<tr>
<td align="left">J302z00</td>
<td align="left">Inguinal hernia - irreducible and NOS</td>
</tr>
<tr>
<td align="left">J303000</td>
<td align="left">Unilateral inguinal hernia - simple</td>
</tr>
<tr>
<td align="left">J303011</td>
<td align="left">Left inguinal hernia</td>
</tr>
<tr>
<td align="left">J303012</td>
<td align="left">Right inguinal hernia</td>
</tr>
<tr>
<td align="left">J303100</td>
<td align="left">Unilateral recurrent inguinal hernia - simple</td>
</tr>
<tr>
<td align="left">J303200</td>
<td align="left">Bilateral inguinal hernia - simple</td>
</tr>
<tr>
<td align="left">J303300</td>
<td align="left">Bilateral recurrent inguinal hernia - simple</td>
</tr>
<tr>
<td align="left">J303.00</td>
<td align="left">Simple inguinal hernia</td>
</tr>
<tr>
<td align="left">J303z00</td>
<td align="left">Simple inguinal hernia NOS</td>
</tr>
<tr>
<td align="left">J304.00</td>
<td align="left">Direct inguinal hernia</td>
</tr>
<tr>
<td align="left">J305.00</td>
<td align="left">Indirect inguinal hernia</td>
</tr>
<tr>
<td align="left">J30..00</td>
<td align="left">Inguinal hernia</td>
</tr>
<tr>
<td align="left">J30..11</td>
<td align="left">Bubonocele</td>
</tr>
<tr>
<td align="left">J30..12</td>
<td align="left">Direct inguinal hernia</td>
</tr>
<tr>
<td align="left">J30..13</td>
<td align="left">Indirect inguinal hernia</td>
</tr>
<tr>
<td align="left">J30..14</td>
<td align="left">Scrotal hernia</td>
</tr>
<tr>
<td align="left">J30y000</td>
<td align="left">Unilateral inguinal hernia unspecified</td>
</tr>
<tr>
<td align="left">J30y100</td>
<td align="left">Unilateral recurrent inguinal hernia unspecified</td>
</tr>
<tr>
<td align="left">J30y200</td>
<td align="left">Bilateral inguinal hernia unspecified</td>
</tr>
<tr>
<td align="left">J30y300</td>
<td align="left">Bilateral recurrent inguinal hernia unspecified</td>
</tr>
<tr>
<td align="left">J30y.00</td>
<td align="left">Inguinal hernia unspecified</td>
</tr>
<tr>
<td align="left">J30yz00</td>
<td align="left">Unspecified inguinal hernia NOS</td>
</tr>
<tr>
<td align="left">J30z.00</td>
<td align="left">Inguinal hernia NOS</td>
</tr>
<tr>
<td align="left">J310000</td>
<td align="left">Unilateral femoral hernia with gangrene</td>
</tr>
<tr>
<td align="left">J310.00</td>
<td align="left">Femoral hernia with gangrene</td>
</tr>
<tr>
<td align="left">J310z00</td>
<td align="left">Femoral hernia with gangrene NOS</td>
</tr>
<tr>
<td align="left">J311000</td>
<td align="left">Unilateral femoral hernia with obstruction</td>
</tr>
<tr>
<td align="left">J311.00</td>
<td align="left">Femoral hernia with obstruction</td>
</tr>
<tr>
<td align="left">J311z00</td>
<td align="left">Femoral hernia with obstruction NOS</td>
</tr>
<tr>
<td align="left">J312000</td>
<td align="left">Unilateral femoral hernia - irreducible</td>
</tr>
<tr>
<td align="left">J312100</td>
<td align="left">Unilateral recurrent femoral hernia - irreducible</td>
</tr>
<tr>
<td align="left">J312.00</td>
<td align="left">Femoral hernia - irreducible</td>
</tr>
<tr>
<td align="left">J312z00</td>
<td align="left">Femoral hernia - irreducible and NOS</td>
</tr>
<tr>
<td align="left">J313000</td>
<td align="left">Unilateral femoral hernia - simple</td>
</tr>
<tr>
<td align="left">J313100</td>
<td align="left">Unilateral recurrent femoral hernia - simple</td>
</tr>
<tr>
<td align="left">J313200</td>
<td align="left">Bilateral femoral hernia - simple</td>
</tr>
<tr>
<td align="left">J313.00</td>
<td align="left">Simple femoral hernia</td>
</tr>
<tr>
<td align="left">J313z00</td>
<td align="left">Simple femoral hernia NOS</td>
</tr>
<tr>
<td align="left">J31..00</td>
<td align="left">Femoral hernia</td>
</tr>
<tr>
<td align="left">J31y000</td>
<td align="left">Unilateral femoral hernia - unspecified</td>
</tr>
<tr>
<td align="left">J31y100</td>
<td align="left">Unilateral recurrent femoral hernia - unspecified</td>
</tr>
<tr>
<td align="left">J31y200</td>
<td align="left">Bilateral femoral hernia - unspecified</td>
</tr>
<tr>
<td align="left">J31y.00</td>
<td align="left">Unspecified femoral hernia</td>
</tr>
<tr>
<td align="left">J31yz00</td>
<td align="left">Unspecified femoral hernia NOS</td>
</tr>
<tr>
<td align="left">J31z.00</td>
<td align="left">Femoral hernia NOS</td>
</tr>
<tr>
<td align="left">J320100</td>
<td align="left">Paraumbilical hernia with gangrene</td>
</tr>
<tr>
<td align="left">J320z00</td>
<td align="left">Umbilical hernia with gangrene NOS</td>
</tr>
<tr>
<td align="left">J321100</td>
<td align="left">Paraumbilical hernia with obstruction</td>
</tr>
<tr>
<td align="left">J321.00</td>
<td align="left">Umbilical hernia with obstruction</td>
</tr>
<tr>
<td align="left">J321z00</td>
<td align="left">Umbilical hernia with obstruction NOS</td>
</tr>
<tr>
<td align="left">J322100</td>
<td align="left">Paraumbilical hernia - irreducible</td>
</tr>
<tr>
<td align="left">J322.00</td>
<td align="left">Umbilical hernia - irreducible</td>
</tr>
<tr>
<td align="left">J322z00</td>
<td align="left">Umbilical hernia - irreducible and NOS</td>
</tr>
<tr>
<td align="left">J323100</td>
<td align="left">Simple paraumbilical hernia</td>
</tr>
<tr>
<td align="left">J323.00</td>
<td align="left">Simple umbilical hernia</td>
</tr>
<tr>
<td align="left">J323z00</td>
<td align="left">Simple umbilical hernia NOS</td>
</tr>
<tr>
<td align="left">J32..00</td>
<td align="left">Umbilical hernia</td>
</tr>
<tr>
<td align="left">J32..12</td>
<td align="left">Paraumbilical hernia</td>
</tr>
<tr>
<td align="left">J32y100</td>
<td align="left">Unspecified paraumbilical hernia</td>
</tr>
<tr>
<td align="left">J32y.00</td>
<td align="left">Unspecified umbilical hernia</td>
</tr>
<tr>
<td align="left">J32yz00</td>
<td align="left">Unspecified umbilical hernia NOS</td>
</tr>
<tr>
<td align="left">J32z.00</td>
<td align="left">Umbilical hernia NOS</td>
</tr>
<tr>
<td align="left">J330100</td>
<td align="left">Incisional hernia with gangrene</td>
</tr>
<tr>
<td align="left">J330200</td>
<td align="left">Epigastric hernia with gangrene</td>
</tr>
<tr>
<td align="left">J330.00</td>
<td align="left">Ventral hernia with gangrene</td>
</tr>
<tr>
<td align="left">J330z00</td>
<td align="left">Ventral hernia with gangrene NOS</td>
</tr>
<tr>
<td align="left">J331100</td>
<td align="left">Incisional hernia with obstruction</td>
</tr>
<tr>
<td align="left">J331200</td>
<td align="left">Epigastric hernia with obstruction</td>
</tr>
<tr>
<td align="left">J331.00</td>
<td align="left">Ventral hernia with obstruction</td>
</tr>
<tr>
<td align="left">J331z00</td>
<td align="left">Ventral hernia with obstruction NOS</td>
</tr>
<tr>
<td align="left">J332000</td>
<td align="left">Ventral hernia unspecified - irreducible</td>
</tr>
<tr>
<td align="left">J332100</td>
<td align="left">Incisional hernia - irreducible</td>
</tr>
<tr>
<td align="left">J332200</td>
<td align="left">Epigastric hernia - irreducible</td>
</tr>
<tr>
<td align="left">J332.00</td>
<td align="left">Ventral hernia - irreducible</td>
</tr>
<tr>
<td align="left">J332z00</td>
<td align="left">Ventral hernia - irreducible NOS</td>
</tr>
<tr>
<td align="left">J333000</td>
<td align="left">Simple ventral hernia unspecified</td>
</tr>
<tr>
<td align="left">J333100</td>
<td align="left">Simple incisional hernia</td>
</tr>
<tr>
<td align="left">J333200</td>
<td align="left">Simple epigastric hernia</td>
</tr>
<tr>
<td align="left">J333211</td>
<td align="left">Epigastric hernia</td>
</tr>
<tr>
<td align="left">J333.00</td>
<td align="left">Simple ventral hernia</td>
</tr>
<tr>
<td align="left">J333z00</td>
<td align="left">Simple ventral hernia NOS</td>
</tr>
<tr>
<td align="left">J33..00</td>
<td align="left">Ventral hernia</td>
</tr>
<tr>
<td align="left">J33..11</td>
<td align="left">Epigastric hernia</td>
</tr>
<tr>
<td align="left">J33..12</td>
<td align="left">Incisional hernia</td>
</tr>
<tr>
<td align="left">J33z000</td>
<td align="left">Unspecified ventral hernia NOS</td>
</tr>
<tr>
<td align="left">J33z100</td>
<td align="left">Incisional hernia NOS</td>
</tr>
<tr>
<td align="left">J33z200</td>
<td align="left">Epigastric hernia NOS</td>
</tr>
<tr>
<td align="left">J33z.00</td>
<td align="left">Ventral hernia NOS</td>
</tr>
<tr>
<td align="left">J35..00</td>
<td align="left">Gluteal hernia</td>
</tr>
<tr>
<td align="left">J36..00</td>
<td align="left">Ischiorectal hernia</td>
</tr>
<tr>
<td align="left">J373.00</td>
<td align="left">Simple lumbar hernia</td>
</tr>
<tr>
<td align="left">J37..00</td>
<td align="left">Lumbar hernia</td>
</tr>
<tr>
<td align="left">J37y.00</td>
<td align="left">Unspecified lumbar hernia</td>
</tr>
<tr>
<td align="left">J37z.00</td>
<td align="left">Lumbar hernia NOS</td>
</tr>
<tr>
<td align="left">J381.00</td>
<td align="left">Obturator hernia with obstruction</td>
</tr>
<tr>
<td align="left">J383.00</td>
<td align="left">Simple obturator hernia</td>
</tr>
<tr>
<td align="left">J38..00</td>
<td align="left">Obturator hernia</td>
</tr>
<tr>
<td align="left">J38z.00</td>
<td align="left">Obturator hernia NOS</td>
</tr>
<tr>
<td align="left">J3A..00</td>
<td align="left">Sciatic hernia</td>
</tr>
<tr>
<td align="left">J3B3.00</td>
<td align="left">Simple retroperitoneal hernia</td>
</tr>
<tr>
<td align="left">J3B..00</td>
<td align="left">Retroperitoneal hernia</td>
</tr>
<tr>
<td align="left">J3C0.00</td>
<td align="left">Spigelian hernia with gangrene</td>
</tr>
<tr>
<td align="left">J3C1.00</td>
<td align="left">Spigelian hernia with obstruction</td>
</tr>
<tr>
<td align="left">J3C2.00</td>
<td align="left">Spigelian hernia - irreducible</td>
</tr>
<tr>
<td align="left">J3C3.00</td>
<td align="left">Simple Spigelian hernia</td>
</tr>
<tr>
<td align="left">J3C..00</td>
<td align="left">Spigelian hernia</td>
</tr>
<tr>
<td align="left">J3Cy.00</td>
<td align="left">Unspecified Spigelian hernia</td>
</tr>
<tr>
<td align="left">J3Cz.00</td>
<td align="left">Spigelian hernia NOS</td>
</tr>
<tr>
<td align="left">J3D..00</td>
<td align="left">Perineal hernia</td>
</tr>
<tr>
<td align="left">J3...00</td>
<td align="left">Hernia of abdominal cavity</td>
</tr>
<tr>
<td align="left">J3y0.00</td>
<td align="left">Other specified abdominal cavity hernia with gangrene</td>
</tr>
<tr>
<td align="left">J3y1.00</td>
<td align="left">Other specified abdominal cavity hernia with obstruction</td>
</tr>
<tr>
<td align="left">J3y2.00</td>
<td align="left">Other specified abdominal cavity hernia - irreducible</td>
</tr>
<tr>
<td align="left">J3y3.00</td>
<td align="left">Other specified abdominal cavity hernia - simple</td>
</tr>
<tr>
<td align="left">J3y..00</td>
<td align="left">Other specified hernias of abdominal cavity</td>
</tr>
<tr>
<td align="left">J3yy.00</td>
<td align="left">Other specified abdominal cavity hernia, unspecified</td>
</tr>
<tr>
<td align="left">J3yz.00</td>
<td align="left">Other specified abdominal cavity hernia NOS</td>
</tr>
<tr>
<td align="left">J3yz.11</td>
<td align="left">Richter's hernia</td>
</tr>
<tr>
<td align="left">J3z0.00</td>
<td align="left">Unspecified abdominal cavity hernia with gangrene</td>
</tr>
<tr>
<td align="left">J3z1.00</td>
<td align="left">Unspecified abdominal cavity hernia with obstruction</td>
</tr>
<tr>
<td align="left">J3z2.00</td>
<td align="left">Unspecified abdominal cavity hernia - irreducible</td>
</tr>
<tr>
<td align="left">J3z3.00</td>
<td align="left">Unspecified abdominal cavity hernia - simple</td>
</tr>
<tr>
<td align="left">J3z..00</td>
<td align="left">Abdominal cavity hernia NOS</td>
</tr>
<tr>
<td align="left">J3zz.00</td>
<td align="left">Unspecified abdominal cavity hernia NOS</td>
</tr>
<tr>
<td align="left">Jyu3000</td>
<td align="left">[X]Other specified abdominal hernia+obstruction,w'o gangrene</td>
</tr>
<tr>
<td align="left">Jyu3200</td>
<td align="left">[X]Oth spcfd abdominal hernia without obstructn or gangrene</td>
</tr>
<tr>
<td align="left">Jyu3.00</td>
<td align="left">[X]Hernia</td>
</tr>
<tr>
<td align="left">PG8..00</td>
<td align="left">Congenital inguinal hernia</td>
</tr>
</tbody>
</table>
<h4>Secondary care diagnoses (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//secondary_care/ICD_hernia_abdo.csv'>ICD_hernia_abdo.csv</a>)</h4>
<table>
<thead>
<tr>
<th>ICD-10 code</th>
<th>ICD-10 Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left">K40</td>
<td align="left">Inguinal hernia</td>
</tr>
<tr>
<td align="left">K41</td>
<td align="left">Femoral hernia</td>
</tr>
<tr>
<td align="left">K42</td>
<td align="left">Umbilical hernia</td>
</tr>
<tr>
<td align="left">K43</td>
<td align="left">Ventral hernia</td>
</tr>
<tr>
<td align="left">K45</td>
<td align="left">Other abdominal hernia</td>
</tr>
<tr>
<td align="left">K46</td>
<td align="left">Unspecified abdominal hernia</td>
</tr>
</tbody>
</table>
<h4>Secondary care procedures (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//secondary_care/OPCS_hernia_abdo.csv'>OPCS_hernia_abdo.csv</a>)</h4>
<table>
<thead>
<tr>
<th>OPCS-4 code</th>
<th>OPCS-4 Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left">T19</td>
<td align="left">Simple excision of inguinal hernial sac</td>
</tr>
<tr>
<td align="left">T19.1</td>
<td align="left">Bilateral herniotomy</td>
</tr>
<tr>
<td align="left">T19.2</td>
<td align="left">Unilateral herniotomy</td>
</tr>
<tr>
<td align="left">T19.3</td>
<td align="left">Ligation of patent processus vaginalis</td>
</tr>
<tr>
<td align="left">T19.8</td>
<td align="left">Other specified simple excision of inguinal hernial sac</td>
</tr>
<tr>
<td align="left">T19.9</td>
<td align="left">Unspecified simple excision of inguinal hernial sac</td>
</tr>
<tr>
<td align="left">T20</td>
<td align="left">Primary repair of inguinal hernia</td>
</tr>
<tr>
<td align="left">T20.1</td>
<td align="left">Primary repair of inguinal hernia using insert of natural material</td>
</tr>
<tr>
<td align="left">T20.2</td>
<td align="left">Primary repair of inguinal hernia using insert of prosthetic material</td>
</tr>
<tr>
<td align="left">T20.3</td>
<td align="left">Primary repair of inguinal hernia using sutures</td>
</tr>
<tr>
<td align="left">T20.4</td>
<td align="left">Primary repair of inguinal hernia and reduction of sliding hernia</td>
</tr>
<tr>
<td align="left">T20.8</td>
<td align="left">Other specified primary repair of inguinal hernia</td>
</tr>
<tr>
<td align="left">T20.9</td>
<td align="left">Unspecified primary repair of inguinal hernia</td>
</tr>
<tr>
<td align="left">T21</td>
<td align="left">Repair of recurrent inguinal hernia</td>
</tr>
<tr>
<td align="left">T21.1</td>
<td align="left">Repair of recurrent inguinal hernia using insert of natural material</td>
</tr>
<tr>
<td align="left">T21.2</td>
<td align="left">Repair of recurrent inguinal hernia using insert of prosthetic material</td>
</tr>
<tr>
<td align="left">T21.3</td>
<td align="left">Repair of recurrent inguinal hernia using sutures</td>
</tr>
<tr>
<td align="left">T21.4</td>
<td align="left">Removal of prosthetic material from previous repair of inguinal hernia</td>
</tr>
<tr>
<td align="left">T21.8</td>
<td align="left">Other specified repair of recurrent inguinal hernia</td>
</tr>
<tr>
<td align="left">T21.9</td>
<td align="left">Unspecified repair of recurrent inguinal hernia</td>
</tr>
<tr>
<td align="left">T22</td>
<td align="left">Primary repair of femoral hernia</td>
</tr>
<tr>
<td align="left">T22.1</td>
<td align="left">Primary repair of femoral hernia using insert of natural material</td>
</tr>
<tr>
<td align="left">T22.2</td>
<td align="left">Primary repair of femoral hernia using insert of prosthetic material</td>
</tr>
<tr>
<td align="left">T22.3</td>
<td align="left">Primary repair of femoral hernia using sutures</td>
</tr>
<tr>
<td align="left">T22.8</td>
<td align="left">Other specified primary repair of femoral hernia</td>
</tr>
<tr>
<td align="left">T22.9</td>
<td align="left">Unspecified primary repair of femoral hernia</td>
</tr>
<tr>
<td align="left">T23</td>
<td align="left">Repair of recurrent femoral hernia</td>
</tr>
<tr>
<td align="left">T23.1</td>
<td align="left">Repair of recurrent femoral hernia using insert of natural material</td>
</tr>
<tr>
<td align="left">T23.2</td>
<td align="left">Repair of recurrent femoral hernia using insert of prosthetic material</td>
</tr>
<tr>
<td align="left">T23.3</td>
<td align="left">Repair of recurrent femoral hernia using sutures</td>
</tr>
<tr>
<td align="left">T23.4</td>
<td align="left">Removal of prosthetic material from previous repair of femoral hernia</td>
</tr>
<tr>
<td align="left">T23.8</td>
<td align="left">Other specified repair of recurrent femoral hernia</td>
</tr>
<tr>
<td align="left">T23.9</td>
<td align="left">Unspecified repair of recurrent femoral hernia</td>
</tr>
<tr>
<td align="left">T24</td>
<td align="left">Primary repair of umbilical hernia</td>
</tr>
<tr>
<td align="left">T24.1</td>
<td align="left">Repair of umbilical hernia using insert of natural material</td>
</tr>
<tr>
<td align="left">T24.2</td>
<td align="left">Repair of umbilical hernia using insert of prosthetic material</td>
</tr>
<tr>
<td align="left">T24.3</td>
<td align="left">Repair of umbilical hernia using sutures</td>
</tr>
<tr>
<td align="left">T24.4</td>
<td align="left">Removal of prosthetic material from previous repair of umbilical hernia</td>
</tr>
<tr>
<td align="left">T24.8</td>
<td align="left">Other specified primary repair of umbilical hernia</td>
</tr>
<tr>
<td align="left">T24.9</td>
<td align="left">Unspecified primary repair of umbilical hernia</td>
</tr>
<tr>
<td align="left">T25</td>
<td align="left">Primary repair of incisional hernia</td>
</tr>
<tr>
<td align="left">T25.1</td>
<td align="left">Primary repair of incisional hernia using insert of natural material</td>
</tr>
<tr>
<td align="left">T25.2</td>
<td align="left">Primary repair of incisional hernia using insert of prosthetic material</td>
</tr>
<tr>
<td align="left">T25.3</td>
<td align="left">Primary repair of incisional hernia using sutures</td>
</tr>
<tr>
<td align="left">T25.8</td>
<td align="left">Other specified primary repair of incisional hernia</td>
</tr>
<tr>
<td align="left">T25.9</td>
<td align="left">Unspecified primary repair of incisional hernia</td>
</tr>
<tr>
<td align="left">T26</td>
<td align="left">Repair of recurrent incisional hernia</td>
</tr>
<tr>
<td align="left">T26.1</td>
<td align="left">Repair of recurrent incisional hernia using insert of natural material</td>
</tr>
<tr>
<td align="left">T26.2</td>
<td align="left">Repair of recurrent incisional hernia using insert of prosthetic material</td>
</tr>
<tr>
<td align="left">T26.3</td>
<td align="left">Repair of recurrent incisional hernia using sutures</td>
</tr>
<tr>
<td align="left">T26.4</td>
<td align="left">Removal of prosthetic material from previous repair of incisional hernia</td>
</tr>
<tr>
<td align="left">T26.8</td>
<td align="left">Other specified repair of recurrent incisional hernia</td>
</tr>
<tr>
<td align="left">T26.9</td>
<td align="left">Unspecified repair of recurrent incisional hernia</td>
</tr>
<tr>
<td align="left">T27</td>
<td align="left">Repair of other hernia of abdominal wall</td>
</tr>
<tr>
<td align="left">T27.1</td>
<td align="left">Repair of ventral hernia using insert of natural material</td>
</tr>
<tr>
<td align="left">T27.2</td>
<td align="left">Repair of ventral hernia using insert of prosthetic material</td>
</tr>
<tr>
<td align="left">T27.3</td>
<td align="left">Repair of ventral hernia using sutures</td>
</tr>
<tr>
<td align="left">T27.4</td>
<td align="left">Removal of prosthetic material from previous repair of ventral hernia</td>
</tr>
<tr>
<td align="left">T27.8</td>
<td align="left">Other specified repair of other hernia of abdominal wall</td>
</tr>
<tr>
<td align="left">T27.9</td>
<td align="left">Unspecified repair of other hernia of abdominal wall</td>
</tr>
<tr>
<td align="left">T97</td>
<td align="left">Repair of recurrent umbilical hernia</td>
</tr>
<tr>
<td align="left">T97.1</td>
<td align="left">Repair of recurrent umbilical hernia using insert of natural material</td>
</tr>
<tr>
<td align="left">T97.2</td>
<td align="left">Repair of recurrent umbilical hernia using insert of prosthetic material</td>
</tr>
<tr>
<td align="left">T97.3</td>
<td align="left">Repair of recurrent umbilical hernia using sutures</td>
</tr>
<tr>
<td align="left">T97.8</td>
<td align="left">Other specified repair of recurrent umbilical hernia</td>
</tr>
<tr>
<td align="left">T97.9</td>
<td align="left">Unspecified repair of recurrent umbilical hernia</td>
</tr>
<tr>
<td align="left">T98</td>
<td align="left">Repair of recurrent other hernia of abdominal wall</td>
</tr>
<tr>
<td align="left">T98.1</td>
<td align="left">Repair of recurrent ventral hernia using insert of natural material</td>
</tr>
<tr>
<td align="left">T98.2</td>
<td align="left">Repair of recurrent ventral hernia using insert of prosthetic material</td>
</tr>
<tr>
<td align="left">T98.3</td>
<td align="left">Repair of recurrent ventral hernia using sutures</td>
</tr>
<tr>
<td align="left">T98.8</td>
<td align="left">Other specified repair of recurrent other hernia of abdominal wall</td>
</tr>
<tr>
<td align="left">T98.9</td>
<td align="left">Unspecified repair of recurrent other hernia of abdominal wall</td>
</tr>
</tbody>
</table>
<h2>Abdominal aortic aneurysm</h2>
<h4>Implementation</h4>
~~~
Use MODIFIED CALIBER 'Abdominal aortic aneurysm' phenotyping algorithm:
At the specified date, a patient is considered to have an 'Abdominal aortic aneurysm' IF they meet any of the criteria below on or before the specified date.
The earliest date on which the individual meets any of the following criteria on or before the specified date is defined as the first event date:
1. Primary care
1. Diagnosis of AAA during a consultation: arterial_gprd: category 4
2. Performance of emergency AAA repair procedure recording during a consultation: aaa_ops_gprd: category 3
3. History of AAA during a consultation. The following Read code from CPRD:
1. Read:14AE.00 Medcode:16993 Descr:H/O: aortic aneurysm
2. Secondary care
1. Diagnosis of AAA as the primary or secondary diagnosis of any hospitalization: arterial_hes: category 4
2. Performance of emergency AAA repair procedure recorded: aaa_ops_opcs: category 3
~~~
<h4>Primary care (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//primary_care/CPRD_AAA.csv'>CPRD_AAA.csv</a>)</h4>
<table>
<thead>
<tr>
<th>Read code</th>
<th>Read Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left">7A11000</td>
<td align="left">Emerg repl aneurysm bifurc aorta by anast aorta to fem art</td>
</tr>
<tr>
<td align="left">7A11200</td>
<td align="left">Emerg repl aneurysm bifurc aorta by anast aorta to iliac a</td>
</tr>
<tr>
<td align="left">7A11211</td>
<td align="left">Y graft of abdominal Aortic aneurysm (emergency)</td>
</tr>
<tr>
<td align="left">7A13.00</td>
<td align="left">Emergency replacement of aneurysmal segment of aorta</td>
</tr>
<tr>
<td align="left">7A13.11</td>
<td align="left">Emergency repair of aortic aneurysm</td>
</tr>
<tr>
<td align="left">7A13300</td>
<td align="left">Emerg replace aneurysm infrarenal aorta by anast aorta/aorta</td>
</tr>
<tr>
<td align="left">7A13400</td>
<td align="left">Emerg replace aneurysm abdom aorta by anast aorta/aorta NEC</td>
</tr>
<tr>
<td align="left">7A13411</td>
<td align="left">Tube graft abdominal Aortic aneurysm (emergency)</td>
</tr>
<tr>
<td align="left">7A13y00</td>
<td align="left">Emergency replacement of aneurysmal segment of aorta OS</td>
</tr>
<tr>
<td align="left">7A13z00</td>
<td align="left">Emergency replacement of aneurysmal segment of aorta NOS</td>
</tr>
<tr>
<td align="left">G714.00</td>
<td align="left">Abdominal aortic aneurysm without mention of rupture</td>
</tr>
<tr>
<td align="left">G714.11</td>
<td align="left">AAA - Abdominal aortic aneurysm without mention of rupture</td>
</tr>
<tr>
<td align="left">G716.00</td>
<td align="left">Aortic aneurysm without mention of rupture NOS</td>
</tr>
<tr>
<td align="left">G716000</td>
<td align="left">Thoracoabdominal aortic aneurysm, without mention of rupture</td>
</tr>
<tr>
<td align="left">14AE.00</td>
<td align="left">H/O: aortic aneurysm</td>
</tr>
</tbody>
</table>
<h4>Secondary care diagnoses (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//secondary_care/ICD_AAA.csv'>ICD_AAA.csv</a>)</h4>
<table>
<thead>
<tr>
<th>ICD-10 code</th>
<th>ICD-10 Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left">I714</td>
<td align="left">Abdominal aortic aneurysm, without mention of rupture</td>
</tr>
<tr>
<td align="left">I716</td>
<td align="left">Thoracoabdominal aortic aneurysm, without mention of rupture</td>
</tr>
<tr>
<td align="left">I719</td>
<td align="left">Aortic aneurysm of unspecified site, without mention of rupture</td>
</tr>
</tbody>
</table>
<h2>Acne</h2>
<h4>Implementation</h4>
~~~
At the specified date, a patient is defined as having had 'Acne' IF they meet the criteria for any of the following on or before the specified date. The earliest date on which the individual meets any of the following criteria on or before the specified date is defined as the first event date:
Primary care
1. 'Acne' diagnosis or history of diagnosis during a consultation
OR
Secondary care (ICD10)
1. ALL diagnoses of 'Acne' or history of diagnosis during a hospitalization
~~~
<h4>Primary care (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//primary_care/CPRD_acne.csv'>CPRD_acne.csv</a>)</h4>
<table>
<thead>
<tr>
<th>Read code</th>
<th>Read Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left">2FG5.00</td>
<td align="left">Acne scar</td>
</tr>
<tr>
<td align="left">M260000</td>
<td align="left">Acne frontalis</td>
</tr>
<tr>
<td align="left">M260.00</td>
<td align="left">Acne varioliformis</td>
</tr>
<tr>
<td align="left">M260z00</td>
<td align="left">Acne varioliformis NOS</td>
</tr>
<tr>
<td align="left">M260z11</td>
<td align="left">Acne necrotica</td>
</tr>
<tr>
<td align="left">M261000</td>
<td align="left">Acne vulgaris</td>
</tr>
<tr>
<td align="left">M261011</td>
<td align="left">Blackhead</td>
</tr>
<tr>
<td align="left">M261012</td>
<td align="left">Comedo</td>
</tr>
<tr>
<td align="left">M261100</td>
<td align="left">Acne conglobata</td>
</tr>
<tr>
<td align="left">M261200</td>
<td align="left">Bromine acne</td>
</tr>
<tr>
<td align="left">M261300</td>
<td align="left">Chlorine acne</td>
</tr>
<tr>
<td align="left">M261400</td>
<td align="left">Iodine acne</td>
</tr>
<tr>
<td align="left">M261500</td>
<td align="left">Colloid acne</td>
</tr>
<tr>
<td align="left">M261600</td>
<td align="left">Cystic acne</td>
</tr>
<tr>
<td align="left">M261900</td>
<td align="left">Occupational acne</td>
</tr>
<tr>
<td align="left">M261A00</td>
<td align="left">Pustular acne</td>
</tr>
<tr>
<td align="left">M261B00</td>
<td align="left">Steroid acne</td>
</tr>
<tr>
<td align="left">M261C00</td>
<td align="left">Tropical acne</td>
</tr>
<tr>
<td align="left">M261F00</td>
<td align="left">Acne fulminans</td>
</tr>
<tr>
<td align="left">M261G00</td>
<td align="left">Acne agminata</td>
</tr>
<tr>
<td align="left">M261J00</td>
<td align="left">Acne necrotica</td>
</tr>
<tr>
<td align="left">M261.00</td>
<td align="left">Other acne</td>
</tr>
<tr>
<td align="left">M261X00</td>
<td align="left">Acne, unspecified</td>
</tr>
<tr>
<td align="left">M261z00</td>
<td align="left">Other acne NOS</td>
</tr>
<tr>
<td align="left">M26y200</td>
<td align="left">Giant comedo</td>
</tr>
<tr>
<td align="left">Myu6800</td>
<td align="left">[X]Other acne</td>
</tr>
<tr>
<td align="left">Myu6F00</td>
<td align="left">[X]Acne, unspecified</td>
</tr>
<tr>
<td align="left">N25..00</td>
<td align="left">SAPHO syndrome Synov, Acne, Pustul, Hyperost, Osteomyelitis</td>
</tr>
</tbody>
</table>
<h4>Secondary care diagnoses (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//secondary_care/ICD_acne.csv'>ICD_acne.csv</a>)</h4>
<table>
<thead>
<tr>
<th>ICD-10 code</th>
<th>ICD-10 Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left">L70.0</td>
<td align="left">Acne vulgaris</td>
</tr>
<tr>
<td align="left">L70.1</td>
<td align="left">Acne conglobata</td>
</tr>
<tr>
<td align="left">L70.2</td>
<td align="left">Acne varioliformis</td>
</tr>
<tr>
<td align="left">L70.3</td>
<td align="left">Acne tropica</td>
</tr>
<tr>
<td align="left">L70.8</td>
<td align="left">Other acne</td>
</tr>
<tr>
<td align="left">L70.9</td>
<td align="left">Acne, unspecified</td>
</tr>
</tbody>
</table>
<h2>Actinic keratosis</h2>
<h4>Implementation</h4>
~~~
At the specified date, a patient is defined as having had 'Actinic keratosis' IF they meet the criteria for any of the following on or before the specified date. The earliest date on which the individual meets any of the following criteria on or before the specified date is defined as the first event date:
Primary care
1. 'Actinic keratosis' diagnosis or history of diagnosis during a consultation
OR
Secondary care (ICD10)
1. ALL diagnoses of 'Actinic keratosis' or history of diagnosis during a hospitalization
~~~
<h4>Primary care (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//primary_care/CPRD_actinic_keratosis.csv'>CPRD_actinic_keratosis.csv</a>)</h4>
<table>
<thead>
<tr>
<th>Read code</th>
<th>Read Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left">7G09800</td>
<td align="left">Cryotherapy to actinic keratosis</td>
</tr>
<tr>
<td align="left">M222.00</td>
<td align="left">Senile keratoma</td>
</tr>
<tr>
<td align="left">M226.00</td>
<td align="left">Solar keratosis</td>
</tr>
<tr>
<td align="left">M226.11</td>
<td align="left">Actinic keratosis</td>
</tr>
</tbody>
</table>
<h4>Secondary care diagnoses (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//secondary_care/ICD_actinic_keratosis.csv'>ICD_actinic_keratosis.csv</a>)</h4>
<table>
<thead>
<tr>
<th>ICD-10 code</th>
<th>ICD-10 Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left">L57.0</td>
<td align="left">Actinic keratosis</td>
</tr>
</tbody>
</table>
<h2>Acute Kidney Injury</h2>
<h4>Implementation</h4>
~~~
At the specified date, a patient is defined as having had 'Acute Kidney Injury' IF they meet the criteria for any of the following on or before the specified date. The earliest date on which the individual meets any of the following criteria on or before the specified date is defined as the first event date:
Secondary care
1. ALL diagnoses of 'Acute Kidney Injury' or history of diagnosis during a hospitalization
~~~
<h4>Secondary care diagnoses (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//secondary_care/ICD_AKI.csv'>ICD_AKI.csv</a>)</h4>
<table>
<thead>
<tr>
<th>ICD-10 code</th>
<th>ICD-10 Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left">N17.0</td>
<td align="left">Acute renal failure with tubular necrosis</td>
</tr>
<tr>
<td align="left">N17.1</td>
<td align="left">Acute renal failure with acute cortical necrosis</td>
</tr>
<tr>
<td align="left">N17.2</td>
<td align="left">Acute renal failure with medullary necrosis</td>
</tr>
<tr>
<td align="left">N17.8</td>
<td align="left">Other acute renal failure</td>
</tr>
<tr>
<td align="left">N17.9</td>
<td align="left">Acute renal failure, unspecified</td>
</tr>
</tbody>
</table>
<h2>Agranulocytosis</h2>
<h4>Implementation</h4>
~~~
At the specified date, a patient is defined as having had 'Agranulocytosis' IF they meet the criteria for any of the following on or before the specified date. The earliest date on which the individual meets any of the following criteria on or before the specified date is defined as the first event date:
Primary care
1. 'Agranulocytosis' diagnosis or history of diagnosis during a consultation
OR
Secondary care (ICD10)
1. ALL diagnoses of 'Agranulocytosis' or history of diagnosis during a hospitalization
~~~
<h4>Primary care (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//primary_care/CPRD_agranulocytosis.csv'>CPRD_agranulocytosis.csv</a>)</h4>
<table>
<thead>
<tr>
<th>Read code</th>
<th>Read Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left">42H2.00</td>
<td align="left">Leucopenia - low white count</td>
</tr>
<tr>
<td align="left">42H2.11</td>
<td align="left">Leucopenia</td>
</tr>
<tr>
<td align="left">42H4.00</td>
<td align="left">Agranulocytosis</td>
</tr>
<tr>
<td align="left">42J2.00</td>
<td align="left">Neutropenia</td>
</tr>
<tr>
<td align="left">D400000</td>
<td align="left">Idiopathic agranulocytosis</td>
</tr>
<tr>
<td align="left">D400011</td>
<td align="left">Idiopathic neutropenia</td>
</tr>
<tr>
<td align="left">D400100</td>
<td align="left">Primary splenic neutropenia</td>
</tr>
<tr>
<td align="left">D400200</td>
<td align="left">Agranulocytosis - drug induced</td>
</tr>
<tr>
<td align="left">D400211</td>
<td align="left">Neutropenia - drug induced</td>
</tr>
<tr>
<td align="left">D400312</td>
<td align="left">Neutropenia due to irradiation</td>
</tr>
<tr>
<td align="left">D400400</td>
<td align="left">Agranulocytosis due to infection</td>
</tr>
<tr>
<td align="left">D400411</td>
<td align="left">Neutropenia due to infection</td>
</tr>
<tr>
<td align="left">D400600</td>
<td align="left">Drug-induced neutropenia</td>
</tr>
<tr>
<td align="left">D400800</td>
<td align="left">Acquired neutropenia NEC</td>
</tr>
<tr>
<td align="left">D400811</td>
<td align="left">Acquired agranulocytosis NEC</td>
</tr>
<tr>
<td align="left">D400900</td>
<td align="left">Cyclical neutropenia</td>
</tr>
<tr>
<td align="left">D400A00</td>
<td align="left">Leucopenia</td>
</tr>
<tr>
<td align="left">D400.00</td>
<td align="left">Agranulocytosis</td>
</tr>
<tr>
<td align="left">D400.11</td>
<td align="left">Kostmann's syndrome</td>
</tr>
<tr>
<td align="left">D400.12</td>
<td align="left">Neutropenia</td>
</tr>
<tr>
<td align="left">D400y00</td>
<td align="left">Other specified agranulocytosis</td>
</tr>
<tr>
<td align="left">D400z00</td>
<td align="left">Agranulocytosis NOS</td>
</tr>
</tbody>
</table>
<h4>Secondary care diagnoses (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//secondary_care/ICD_agranulocytosis.csv'>ICD_agranulocytosis.csv</a>)</h4>
<table>
<thead>
<tr>
<th>ICD-10 code</th>
<th>ICD-10 Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left">D70</td>
<td align="left">Agranulocytosis</td>
</tr>
</tbody>
</table>
<h2>Alcohol Problems</h2>
<h4>Implementation</h4>
~~~
At the specified date, a patient is defined as having had Alcohol Problems IF they meet the criteria for any of the following on or before the specified date. The earliest date on which the individual meets any of the following criteria on or before the specified date is defined as the first event date:
Primary care
1. Alcohol Problems diagnosis or history of diagnosis during a consultation
OR
Secondary care
1. ALL diagnoses of Alcohol Problems or history of diagnosis during a hospitalization
~~~
<h4>Primary care (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//primary_care/CPRD_alc_problems.csv'>CPRD_alc_problems.csv</a>)</h4>
<table>
<thead>
<tr>
<th>Read code</th>
<th>Read Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left">136S.00</td>
<td align="left">Hazardous alcohol use</td>
</tr>
<tr>
<td align="left">136T.00</td>
<td align="left">Harmful alcohol use</td>
</tr>
<tr>
<td align="left">136W.00</td>
<td align="left">Alcohol misuse</td>
</tr>
<tr>
<td align="left">13Y8.00</td>
<td align="left">Alcoholics anonymous</td>
</tr>
<tr>
<td align="left">1462.00</td>
<td align="left">H/O: alcoholism</td>
</tr>
<tr>
<td align="left">1B1c.00</td>
<td align="left">Alcohol induced hallucinations</td>
</tr>
<tr>
<td align="left">66e0.00</td>
<td align="left">Alcohol abuse monitoring</td>
</tr>
<tr>
<td align="left">66e..00</td>
<td align="left">Alcohol disorder monitoring</td>
</tr>
<tr>
<td align="left">7P22100</td>
<td align="left">Delivery of rehabilitation for alcohol addiction</td>
</tr>
<tr>
<td align="left">8BA8.00</td>
<td align="left">Alcohol detoxification</td>
</tr>
<tr>
<td align="left">8CAv.00</td>
<td align="left">Advised to contact primary care alcohol worker</td>
</tr>
<tr>
<td align="left">8G32.00</td>
<td align="left">Aversion therapy - alcoholism</td>
</tr>
<tr>
<td align="left">8H35.00</td>
<td align="left">Admitted to alcohol detoxification centre</td>
</tr>
<tr>
<td align="left">8H7p.00</td>
<td align="left">Referral to community alcohol team</td>
</tr>
<tr>
<td align="left">8HkG.00</td>
<td align="left">Referral to specialist alcohol treatment service</td>
</tr>
<tr>
<td align="left">8HkJ.00</td>
<td align="left">Referral to alcohol brief intervention service</td>
</tr>
<tr>
<td align="left">9k12.00</td>
<td align="left">Alcohol misuse - enhanced service completed</td>
</tr>
<tr>
<td align="left">9k1..00</td>
<td align="left">Alcohol misuse - enhanced services administration</td>
</tr>
<tr>
<td align="left">9k1A.00</td>
<td align="left">Brief intervention for excessive alcohol consumptn completed</td>
</tr>
<tr>
<td align="left">9k1B.00</td>
<td align="left">Extended intervention for excessive alcohol consumptn complt</td>
</tr>
<tr>
<td align="left">9NN2.00</td>
<td align="left">Under care of community alcohol team</td>
</tr>
<tr>
<td align="left">C150500</td>
<td align="left">Alcohol-induced pseudo-Cushing's syndrome</td>
</tr>
<tr>
<td align="left">C251.11</td>
<td align="left">Wernicke's encephalopathy</td>
</tr>
<tr>
<td align="left">C253.00</td>
<td align="left">Wernicke's encephalopathy</td>
</tr>
<tr>
<td align="left">E010.00</td>
<td align="left">Alcohol withdrawal delirium</td>
</tr>
<tr>
<td align="left">E010.11</td>
<td align="left">DTs - delirium tremens</td>
</tr>
<tr>
<td align="left">E010.12</td>
<td align="left">Delirium tremens</td>
</tr>
<tr>
<td align="left">E011000</td>
<td align="left">Korsakov's alcoholic psychosis</td>
</tr>
<tr>
<td align="left">E011100</td>
<td align="left">Korsakov's alcoholic psychosis with peripheral neuritis</td>
</tr>
<tr>
<td align="left">E011200</td>
<td align="left">Wernicke-Korsakov syndrome</td>
</tr>
<tr>
<td align="left">E011.00</td>
<td align="left">Alcohol amnestic syndrome</td>
</tr>
<tr>
<td align="left">E011z00</td>
<td align="left">Alcohol amnestic syndrome NOS</td>
</tr>
<tr>
<td align="left">E012000</td>
<td align="left">Chronic alcoholic brain syndrome</td>
</tr>
<tr>
<td align="left">E012.00</td>
<td align="left">Other alcoholic dementia</td>
</tr>
<tr>
<td align="left">E012.11</td>
<td align="left">Alcoholic dementia NOS</td>
</tr>
<tr>
<td align="left">E013.00</td>
<td align="left">Alcohol withdrawal hallucinosis</td>
</tr>
<tr>
<td align="left">E015.00</td>
<td align="left">Alcoholic paranoia</td>
</tr>
<tr>
<td align="left">E01..00</td>
<td align="left">Alcoholic psychoses</td>
</tr>
<tr>
<td align="left">E01y000</td>
<td align="left">Alcohol withdrawal syndrome</td>
</tr>
<tr>
<td align="left">E01y.00</td>
<td align="left">Other alcoholic psychosis</td>
</tr>
<tr>
<td align="left">E01yz00</td>
<td align="left">Other alcoholic psychosis NOS</td>
</tr>
<tr>
<td align="left">E01z.00</td>
<td align="left">Alcoholic psychosis NOS</td>
</tr>
<tr>
<td align="left">E230000</td>
<td align="left">Acute alcoholic intoxication, unspecified, in alcoholism</td>
</tr>
<tr>
<td align="left">E230100</td>
<td align="left">Continuous acute alcoholic intoxication in alcoholism</td>
</tr>
<tr>
<td align="left">E230200</td>
<td align="left">Episodic acute alcoholic intoxication in alcoholism</td>
</tr>
<tr>
<td align="left">E230300</td>
<td align="left">Acute alcoholic intoxication in remission, in alcoholism</td>
</tr>
<tr>
<td align="left">E230.00</td>
<td align="left">Acute alcoholic intoxication in alcoholism</td>
</tr>
<tr>
<td align="left">E230.11</td>
<td align="left">Alcohol dependence with acute alcoholic intoxication</td>
</tr>
<tr>
<td align="left">E230z00</td>
<td align="left">Acute alcoholic intoxication in alcoholism NOS</td>
</tr>
<tr>
<td align="left">E231000</td>
<td align="left">Unspecified chronic alcoholism</td>
</tr>
<tr>
<td align="left">E231100</td>
<td align="left">Continuous chronic alcoholism</td>
</tr>
<tr>
<td align="left">E231200</td>
<td align="left">Episodic chronic alcoholism</td>
</tr>
<tr>
<td align="left">E231300</td>
<td align="left">Chronic alcoholism in remission</td>
</tr>
<tr>
<td align="left">E231.00</td>
<td align="left">Chronic alcoholism</td>
</tr>
<tr>
<td align="left">E231.11</td>
<td align="left">Dipsomania</td>
</tr>
<tr>
<td align="left">E231z00</td>
<td align="left">Chronic alcoholism NOS</td>
</tr>
<tr>
<td align="left">E23..00</td>
<td align="left">Alcohol dependence syndrome</td>
</tr>
<tr>
<td align="left">E23..11</td>
<td align="left">Alcoholism</td>
</tr>
<tr>
<td align="left">E23..12</td>
<td align="left">Alcohol problem drinking</td>
</tr>
<tr>
<td align="left">E23z.00</td>
<td align="left">Alcohol dependence syndrome NOS</td>
</tr>
<tr>
<td align="left">Eu10100</td>
<td align="left">[X]Mental and behav dis due to use of alcohol: harmful use</td>
</tr>
<tr>
<td align="left">Eu10200</td>
<td align="left">[X]Mental and behav dis due to use alcohol: dependence syndr</td>
</tr>
<tr>
<td align="left">Eu10211</td>
<td align="left">[X]Alcohol addiction</td>
</tr>
<tr>
<td align="left">Eu10212</td>
<td align="left">[X]Chronic alcoholism</td>
</tr>
<tr>
<td align="left">Eu10213</td>
<td align="left">[X]Dipsomania</td>
</tr>
<tr>
<td align="left">Eu10300</td>
<td align="left">[X]Mental and behav dis due to use alcohol: withdrawal state</td>
</tr>
<tr>
<td align="left">Eu10400</td>
<td align="left">[X]Men & behav dis due alcohl: withdrawl state with delirium</td>
</tr>
<tr>
<td align="left">Eu10411</td>
<td align="left">[X]Delirium tremens, alcohol induced</td>
</tr>
<tr>
<td align="left">Eu10500</td>
<td align="left">[X]Mental & behav dis due to use alcohol: psychotic disorder</td>
</tr>
<tr>
<td align="left">Eu10511</td>
<td align="left">[X]Alcoholic hallucinosis</td>
</tr>
<tr>
<td align="left">Eu10512</td>
<td align="left">[X]Alcoholic jealousy</td>
</tr>
<tr>
<td align="left">Eu10513</td>
<td align="left">[X]Alcoholic paranoia</td>
</tr>
<tr>
<td align="left">Eu10514</td>
<td align="left">[X]Alcoholic psychosis NOS</td>
</tr>
<tr>
<td align="left">Eu10600</td>
<td align="left">[X]Mental and behav dis due to use alcohol: amnesic syndrome</td>
</tr>
<tr>
<td align="left">Eu10611</td>
<td align="left">[X]Korsakov's psychosis, alcohol induced</td>
</tr>
<tr>
<td align="left">Eu10700</td>
<td align="left">[X]Men & behav dis due alcoh: resid & late-onset psychot dis</td>
</tr>
<tr>
<td align="left">Eu10711</td>
<td align="left">[X]Alcoholic dementia NOS</td>
</tr>
<tr>
<td align="left">Eu10712</td>
<td align="left">[X]Chronic alcoholic brain syndrome</td>
</tr>
<tr>
<td align="left">Eu10800</td>
<td align="left">[X]Alcohol withdrawal-induced seizure</td>
</tr>
<tr>
<td align="left">Eu10.00</td>
<td align="left">[X]Mental and behavioural disorders due to use of alcohol</td>
</tr>
<tr>
<td align="left">Eu10y00</td>
<td align="left">[X]Men & behav dis due to use alcohol: oth men & behav dis</td>
</tr>
<tr>
<td align="left">Eu10z00</td>
<td align="left">[X]Ment & behav dis due use alcohol: unsp ment & behav dis</td>
</tr>
<tr>
<td align="left">F11x000</td>
<td align="left">Cerebral degeneration due to alcoholism</td>
</tr>
<tr>
<td align="left">F11x011</td>
<td align="left">Alcoholic encephalopathy</td>
</tr>
<tr>
<td align="left">F144000</td>
<td align="left">Cerebellar ataxia due to alcoholism</td>
</tr>
<tr>
<td align="left">F25B.00</td>
<td align="left">Alcohol-induced epilepsy</td>
</tr>
<tr>
<td align="left">F375.00</td>
<td align="left">Alcoholic polyneuropathy</td>
</tr>
<tr>
<td align="left">F394100</td>
<td align="left">Alcoholic myopathy</td>
</tr>
<tr>
<td align="left">G555.00</td>
<td align="left">Alcoholic cardiomyopathy</td>
</tr>
<tr>
<td align="left">G852300</td>
<td align="left">Oesophageal varices in alcoholic cirrhosis of the liver</td>
</tr>
<tr>
<td align="left">J153.00</td>
<td align="left">Alcoholic gastritis</td>
</tr>
<tr>
<td align="left">J610.00</td>
<td align="left">Alcoholic fatty liver</td>
</tr>
<tr>
<td align="left">J611.00</td>
<td align="left">Acute alcoholic hepatitis</td>
</tr>
<tr>
<td align="left">J612000</td>
<td align="left">Alcoholic fibrosis and sclerosis of liver</td>
</tr>
<tr>
<td align="left">J612.00</td>
<td align="left">Alcoholic cirrhosis of liver</td>
</tr>
<tr>
<td align="left">J613000</td>
<td align="left">Alcoholic hepatic failure</td>
</tr>
<tr>
<td align="left">J613.00</td>
<td align="left">Alcoholic liver damage unspecified</td>
</tr>
<tr>
<td align="left">J617000</td>
<td align="left">Chronic alcoholic hepatitis</td>
</tr>
<tr>
<td align="left">J617.00</td>
<td align="left">Alcoholic hepatitis</td>
</tr>
<tr>
<td align="left">J670800</td>
<td align="left">Alcohol-induced acute pancreatitis</td>
</tr>
<tr>
<td align="left">J671000</td>
<td align="left">Alcohol-induced chronic pancreatitis</td>
</tr>
<tr>
<td align="left">Z191100</td>
<td align="left">Alcohol withdrawal regime</td>
</tr>
<tr>
<td align="left">Z191200</td>
<td align="left">Planned reduction of alcohol consumption</td>
</tr>
<tr>
<td align="left">Z191211</td>
<td align="left">Alcohol reduction programme</td>
</tr>
<tr>
<td align="left">Z191.00</td>
<td align="left">Alcohol detoxification</td>
</tr>
<tr>
<td align="left">Z4B1.00</td>
<td align="left">Alcoholism counselling</td>
</tr>
<tr>
<td align="left">ZV11300</td>
<td align="left">[V]Personal history of alcoholism</td>
</tr>
<tr>
<td align="left">ZV11311</td>
<td align="left">[V]Problems related to lifestyle alcohol use</td>
</tr>
<tr>
<td align="left">ZV57A00</td>
<td align="left">[V]Alcohol rehabilitation</td>
</tr>
<tr>
<td align="left">ZV6D600</td>
<td align="left">[V]Alcohol abuse counselling and surveillance</td>
</tr>
</tbody>
</table>
<h4>Secondary care diagnoses (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//secondary_care/ICD_alc_problems.csv'>ICD_alc_problems.csv</a>)</h4>
<table>
<thead>
<tr>
<th>ICD-10 code</th>
<th>ICD-10 Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left">F10.1</td>
<td align="left">Mental and behavioural disorders due to use of alcohol - Harmful use</td>
</tr>
<tr>
<td align="left">F10.2</td>
<td align="left">Mental and behavioural disorders due to use of alcohol - Dependence syndrome</td>
</tr>
<tr>
<td align="left">F10.3</td>
<td align="left">Mental and behavioural disorders due to use of alcohol - Withdrawal state</td>
</tr>
<tr>
<td align="left">F10.4</td>
<td align="left">Mental and behavioural disorders due to use of alcohol - Withdrawal state with delirium</td>
</tr>
<tr>
<td align="left">F10.5</td>
<td align="left">Mental and behavioural disorders due to use of alcohol - Psychotic disorder</td>
</tr>
<tr>
<td align="left">F10.6</td>
<td align="left">Mental and behavioural disorders due to use of alcohol - Amnesic syndrome</td>
</tr>
<tr>
<td align="left">F10.7</td>
<td align="left">Mental and behavioural disorders due to use of alcohol - Residual and late-onset psychotic disorder</td>
</tr>
<tr>
<td align="left">F10.8</td>
<td align="left">Mental and behavioural disorders due to use of alcohol - Other mental and behavioural disorders</td>
</tr>
<tr>
<td align="left">F10.9</td>
<td align="left">Mental and behavioural disorders due to use of alcohol - Unspecified mental and behavioural disorder</td>
</tr>
<tr>
<td align="left">E24.4</td>
<td align="left">Alcohol-induced pseudo-Cushing's syndrome</td>
</tr>
<tr>
<td align="left">G31.2</td>
<td align="left">Degeneration of nervous system due to alcohol</td>
</tr>
<tr>
<td align="left">G62.1</td>
<td align="left">Alcoholic polyneuropathy</td>
</tr>
<tr>
<td align="left">G72.1</td>
<td align="left">Alcoholic myopathy</td>
</tr>
<tr>
<td align="left">I42.6</td>
<td align="left">Alcoholic cardiomyopathy</td>
</tr>
<tr>
<td align="left">K29.2</td>
<td align="left">Alcoholic gastritis</td>
</tr>
<tr>
<td align="left">K70</td>
<td align="left">Alcoholic liver disease</td>
</tr>
<tr>
<td align="left">K85.2</td>
<td align="left">Alcohol-induced acute pancreatitis</td>
</tr>
<tr>
<td align="left">K86.0</td>
<td align="left">Alcohol-induced chronic pancreatitis</td>
</tr>
<tr>
<td align="left">Z50.2</td>
<td align="left">Alcohol rehabilitation</td>
</tr>
<tr>
<td align="left">Z71.4</td>
<td align="left">Alcohol abuse counselling and surveillance</td>
</tr>
</tbody>
</table>
<h2>Alcoholic liver disease</h2>
<h4>Implementation</h4>
~~~
At the specified date, a patient is defined as having had 'Alcoholic liver disease' IF they meet the criteria for any of the following on or before the specified date. The earliest date on which the individual meets any of the following criteria on or before the specified date is defined as the first event date:
Primary care
1. 'Alcoholic liver disease' diagnosis or history of diagnosis or procedure during a consultation
OR
Secondary care
1. ALL diagnoses of 'Alcoholic liver disease' or history of diagnosis during a hospitalization
~~~
<h4>Primary care (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//primary_care/CPRD_liver_alc.csv'>CPRD_liver_alc.csv</a>)</h4>
<table>
<thead>
<tr>
<th>Read code</th>
<th>Read Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left">G852300</td>
<td align="left">Oesophageal varices in alcoholic cirrhosis of the liver</td>
</tr>
<tr>
<td align="left">J610.00</td>
<td align="left">Alcoholic fatty liver</td>
</tr>
<tr>
<td align="left">J611.00</td>
<td align="left">Acute alcoholic hepatitis</td>
</tr>
<tr>
<td align="left">J612000</td>
<td align="left">Alcoholic fibrosis and sclerosis of liver</td>
</tr>
<tr>
<td align="left">J612.00</td>
<td align="left">Alcoholic cirrhosis of liver</td>
</tr>
<tr>
<td align="left">J612.12</td>
<td align="left">Laennec's cirrhosis</td>
</tr>
<tr>
<td align="left">J613000</td>
<td align="left">Alcoholic hepatic failure</td>
</tr>
<tr>
<td align="left">J613.00</td>
<td align="left">Alcoholic liver damage unspecified</td>
</tr>
<tr>
<td align="left">J617000</td>
<td align="left">Chronic alcoholic hepatitis</td>
</tr>
<tr>
<td align="left">J617.00</td>
<td align="left">Alcoholic hepatitis</td>
</tr>
</tbody>
</table>
<h4>Secondary care diagnoses (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//secondary_care/ICD_liver_alc.csv'>ICD_liver_alc.csv</a>)</h4>
<table>
<thead>
<tr>
<th>ICD-10 code</th>
<th>ICD-10 Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left">K70</td>
<td align="left">Alcoholic liver disease</td>
</tr>
</tbody>
</table>
<h2>Allergic and chronic rhinitis</h2>
<h4>Implementation</h4>
~~~
At the specified date, a patient is defined as having had Allergic and chronic rhinitis IF they meet the criteria for any of the following on or before the specified date. The earliest date on which the individual meets any of the following criteria on or before the specified date is defined as the first event date:
Primary care
1. Allergic and chronic rhinitis diagnosis or history of diagnosis during a consultation
OR
Secondary care (ICD10)
1. ALL diagnoses of Allergic and chronic rhinitis or history of diagnosis during a hospitalization
~~~
<h4>Primary care (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//primary_care/CPRD_allergic_rhinitis.csv'>CPRD_allergic_rhinitis.csv</a>)</h4>
<table>
<thead>
<tr>
<th>Read code</th>
<th>Read Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left">14B1.00</td>
<td align="left">H/O: hay fever</td>
</tr>
<tr>
<td align="left">H120000</td>
<td align="left">Chronic simple rhinitis</td>
</tr>
<tr>
<td align="left">H120100</td>
<td align="left">Chronic catarrhal rhinitis</td>
</tr>
<tr>
<td align="left">H120200</td>
<td align="left">Chronic hypertrophic rhinitis</td>
</tr>
<tr>
<td align="left">H120300</td>
<td align="left">Chronic atrophic rhinitis</td>
</tr>
<tr>
<td align="left">H120400</td>
<td align="left">Chronic infective rhinitis</td>
</tr>
<tr>
<td align="left">H120500</td>
<td align="left">Chronic ulcerative rhinitis</td>
</tr>
<tr>
<td align="left">H120600</td>
<td align="left">Chronic membranous rhinitis</td>
</tr>
<tr>
<td align="left">H120700</td>
<td align="left">Chronic fibrinous rhinitis</td>
</tr>
<tr>
<td align="left">H120.00</td>
<td align="left">Chronic rhinitis</td>
</tr>
<tr>
<td align="left">H120z00</td>
<td align="left">Chronic rhinitis NOS</td>
</tr>
<tr>
<td align="left">H13..11</td>
<td align="left">Chronic rhinosinusitis</td>
</tr>
<tr>
<td align="left">H170.00</td>
<td align="left">Allergic rhinitis due to pollens</td>
</tr>
<tr>
<td align="left">H170.11</td>
<td align="left">Hay fever - pollens</td>
</tr>
<tr>
<td align="left">H170.12</td>
<td align="left">Pollinosis</td>
</tr>
<tr>
<td align="left">H171000</td>
<td align="left">Allergy to animal</td>
</tr>
<tr>
<td align="left">H171100</td>
<td align="left">Dog allergy</td>
</tr>
<tr>
<td align="left">H171.00</td>
<td align="left">Allergic rhinitis due to other allergens</td>
</tr>
<tr>
<td align="left">H171.11</td>
<td align="left">Cat allergy</td>
</tr>
<tr>
<td align="left">H171.12</td>
<td align="left">Dander (animal) allergy</td>
</tr>
<tr>
<td align="left">H171.13</td>
<td align="left">Feather allergy</td>
</tr>
<tr>
<td align="left">H171.14</td>
<td align="left">Hay fever - other allergen</td>
</tr>
<tr>
<td align="left">H171.15</td>
<td align="left">House dust allergy</td>
</tr>
<tr>
<td align="left">H171.16</td>
<td align="left">House dust mite allergy</td>
</tr>
<tr>
<td align="left">H172.00</td>
<td align="left">Allergic rhinitis due to unspecified allergen</td>
</tr>
<tr>
<td align="left">H172.11</td>
<td align="left">Hay fever - unspecified allergen</td>
</tr>
<tr>
<td align="left">H17..00</td>
<td align="left">Allergic rhinitis</td>
</tr>
<tr>
<td align="left">H17..11</td>
<td align="left">Perennial rhinitis</td>
</tr>
<tr>
<td align="left">H17..12</td>
<td align="left">Allergic rhinosinusitis</td>
</tr>
<tr>
<td align="left">H17z.00</td>
<td align="left">Allergic rhinitis NOS</td>
</tr>
<tr>
<td align="left">H18..00</td>
<td align="left">Vasomotor rhinitis</td>
</tr>
<tr>
<td align="left">H330011</td>
<td align="left">Hay fever with asthma</td>
</tr>
<tr>
<td align="left">H330.13</td>
<td align="left">Hay fever with asthma</td>
</tr>
<tr>
<td align="left">Hyu2000</td>
<td align="left">[X]Other seasonal allergic rhinitis</td>
</tr>
<tr>
<td align="left">Hyu2100</td>
<td align="left">[X]Other allergic rhinitis</td>
</tr>
</tbody>
</table>
<h4>Secondary care diagnoses (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//secondary_care/ICD_allergic_rhinitis.csv'>ICD_allergic_rhinitis.csv</a>)</h4>
<table>
<thead>
<tr>
<th>ICD-10 code</th>
<th>ICD-10 Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left">J30.1</td>
<td align="left">Allergic rhinitis due to pollen</td>
</tr>
<tr>
<td align="left">J30.2</td>
<td align="left">Other seasonal allergic rhinitis</td>
</tr>
<tr>
<td align="left">J30.3</td>
<td align="left">Other allergic rhinitis</td>
</tr>
<tr>
<td align="left">J30.4</td>
<td align="left">Allergic rhinitis, unspecified</td>
</tr>
<tr>
<td align="left">J31.0</td>
<td align="left">Chronic rhinitis</td>
</tr>
</tbody>
</table>
<h2>Alopecia areata</h2>
<h4>Implementation</h4>
~~~
At the specified date, a patient is defined as having had 'Alopecia areata' IF they meet the criteria for any of the following on or before the specified date. The earliest date on which the individual meets any of the following criteria on or before the specified date is defined as the first event date:
Primary care
1. 'Alopecia areata' diagnosis or history of diagnosis during a consultation
OR
Secondary care (ICD10)
1. ALL diagnoses of 'Alopecia areata' or history of diagnosis during a hospitalization
~~~
<h4>Primary care (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//primary_care/CPRD_alopecia_areata.csv'>CPRD_alopecia_areata.csv</a>)</h4>
<table>
<thead>
<tr>
<th>Read code</th>
<th>Read Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left">M240100</td>
<td align="left">Alopecia areata</td>
</tr>
<tr>
<td align="left">M240111</td>
<td align="left">Ophiasis</td>
</tr>
<tr>
<td align="left">M240B00</td>
<td align="left">Alopecia totalis</td>
</tr>
<tr>
<td align="left">M240K00</td>
<td align="left">Alopecia universalis</td>
</tr>
<tr>
<td align="left">M240U00</td>
<td align="left">Ophiasis</td>
</tr>
<tr>
<td align="left">Myu6200</td>
<td align="left">[X]Other alopecia areata</td>
</tr>
</tbody>
</table>
<h4>Secondary care diagnoses (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//secondary_care/ICD_alopecia_areata.csv'>ICD_alopecia_areata.csv</a>)</h4>
<table>
<thead>
<tr>
<th>ICD-10 code</th>
<th>ICD-10 Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left">L63</td>
<td align="left">Alopecia areata</td>
</tr>
</tbody>
</table>
<h2>Anal fissure</h2>
<h4>Implementation</h4>
~~~
At the specified date, a patient is defined as having had 'Anal fissure' IF they meet the criteria for any of the following on or before the specified date. The earliest date on which the individual meets any of the following criteria on or before the specified date is defined as the first event date:
Primary care
1. 'Anal fissure' diagnosis or history of diagnosis or procedure during a consultation
OR
Secondary care
1. ALL diagnoses of 'Anal fissure' or history of diagnosis during a hospitalization
OR
Secondary care (OPCS4)
1. ALL procedures for 'Anal fissure' during a hospitalization
~~~
<h4>Primary care (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//primary_care/CPRD_anal_fissure.csv'>CPRD_anal_fissure.csv</a>)</h4>
<table>
<thead>
<tr>
<th>Read code</th>
<th>Read Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="right">7739300</td>
<td align="left">Excision of anal fissure</td>
</tr>
<tr>
<td align="left">J530000</td>
<td align="left">Acute anal fissure</td>
</tr>
<tr>
<td align="left">J530100</td>
<td align="left">Chronic anal fissure</td>
</tr>
<tr>
<td align="left">J530.00</td>
<td align="left">Anal fissure</td>
</tr>
<tr>
<td align="left">J530.11</td>
<td align="left">Tear of anus - non-traumatic</td>
</tr>
<tr>
<td align="left">J53..00</td>
<td align="left">Anal fissure and fistula</td>
</tr>
<tr>
<td align="left">J53z.00</td>
<td align="left">Anal fissure and fistula NOS</td>
</tr>
<tr>
<td align="left">J544.00</td>
<td align="left">Ano-rectal fissure abscess</td>
</tr>
</tbody>
</table>
<h4>Secondary care diagnoses (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//secondary_care/ICD_anal_fissure.csv'>ICD_anal_fissure.csv</a>)</h4>
<table>
<thead>
<tr>
<th>ICD-10 code</th>
<th>ICD-10 Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left">K60.0</td>
<td align="left">Acute anal fissure</td>
</tr>
<tr>
<td align="left">K60.1</td>
<td align="left">Chronic anal fissure</td>
</tr>
<tr>
<td align="left">K60.2</td>
<td align="left">Anal fissure, unspecified</td>
</tr>
</tbody>
</table>
<h4>Secondary care procedures (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//secondary_care/OPCS_anal_fissure.csv'>OPCS_anal_fissure.csv</a>)</h4>
<table>
<thead>
<tr>
<th>OPCS-4 code</th>
<th>OPCS-4 Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left">H56.4</td>
<td align="left">Excision of anal fissure</td>
</tr>
</tbody>
</table>
<h2>Angiodysplasia of colon</h2>
<h4>Implementation</h4>
~~~
At the specified date, a patient is defined as having had 'Angiodysplasia of colon' IF they meet the criteria for any of the following on or before the specified date. The earliest date on which the individual meets any of the following criteria on or before the specified date is defined as the first event date:
Primary care
1. 'Angiodysplasia of colon' diagnosis or history of diagnosis during a consultation
OR
Secondary care (ICD10)
1. ALL diagnoses of 'Angiodysplasia of colon' or history of diagnosis during a hospitalization
~~~
<h4>Primary care (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//primary_care/CPRD_angiodysplasia_colon.csv'>CPRD_angiodysplasia_colon.csv</a>)</h4>
<table>
<thead>
<tr>
<th>Read code</th>
<th>Read Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left">J577000</td>
<td align="left">Angiodysplasia of colon</td>
</tr>
</tbody>
</table>
<h4>Secondary care diagnoses (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//secondary_care/ICD_angiodysplasia_colon.csv'>ICD_angiodysplasia_colon.csv</a>)</h4>
<table>
<thead>
<tr>
<th>ICD-10 code</th>
<th>ICD-10 Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left">K55.2</td>
<td align="left">Angiodysplasia of colon</td>
</tr>
</tbody>
</table>
<h2>Ankylosing spondylitis</h2>
<h4>Implementation</h4>
~~~
At the specified date, a patient is defined as having had 'Ankylosing spondylitis' IF they meet the criteria for any of the following on or before the specified date. The earliest date on which the individual meets any of the following criteria on or before the specified date is defined as the first event date:
Primary care
1. 'Ankylosing spondylitis' diagnosis or history of diagnosis during a consultation
OR
Secondary care (ICD10)
1. ALL diagnoses of 'Ankylosing spondylitis' or history of diagnosis during a hospitalization
~~~
<h4>Primary care (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//primary_care/CPRD_ank_spond.csv'>CPRD_ank_spond.csv</a>)</h4>
<table>
<thead>
<tr>
<th>Read code</th>
<th>Read Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="right">2377</td>
<td align="left">O/E - ankyl.spondyl.chest def.</td>
</tr>
<tr>
<td align="left">388p.00</td>
<td align="left">BASDAI - Bath ankylosing spondylitis disease activity index</td>
</tr>
<tr>
<td align="left">N100.00</td>
<td align="left">Ankylosing spondylitis</td>
</tr>
<tr>
<td align="left">N100.11</td>
<td align="left">Marie - Strumpell spondylitis</td>
</tr>
</tbody>
</table>
<h4>Secondary care diagnoses (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//secondary_care/ICD_ank_spond.csv'>ICD_ank_spond.csv</a>)</h4>
<table>
<thead>
<tr>
<th>ICD-10 code</th>
<th>ICD-10 Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left">M45</td>
<td align="left">Ankylosing spondylitis</td>
</tr>
</tbody>
</table>
<h2>Anorectal fistula</h2>
<h4>Implementation</h4>
~~~
At the specified date, a patient is defined as having had 'Anorectal fistula' IF they meet the criteria for any of the following on or before the specified date. The earliest date on which the individual meets any of the following criteria on or before the specified date is defined as the first event date:
Primary care
1. 'Anorectal fistula' diagnosis or history of diagnosis or procedure during a consultation
OR
Secondary care
1. ALL diagnoses of 'Anorectal fistula' or history of diagnosis during a hospitalization
OR
Secondary care (OPCS4)
1. ALL procedures for 'Anorectal fistula' during a hospitalization
~~~
<h4>Primary care (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//primary_care/CPRD_anorectal_fistula.csv'>CPRD_anorectal_fistula.csv</a>)</h4>
<table>
<thead>
<tr>
<th>Read code</th>
<th>Read Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="right">7729700</td>
<td align="left">Closure of rectal fistula</td>
</tr>
<tr>
<td align="right">7738000</td>
<td align="left">Laying open of low anal fistula</td>
</tr>
<tr>
<td align="right">7738100</td>
<td align="left">Laying open of high anal fistula</td>
</tr>
<tr>
<td align="right">7738200</td>
<td align="left">Laying open of anal fistula NEC</td>
</tr>
<tr>
<td align="right">7738300</td>
<td align="left">Insertion seton in high anal fistula+part lay open track HFQ</td>
</tr>
<tr>
<td align="right">7738400</td>
<td align="left">Fistulography of anal fistula</td>
</tr>
<tr>
<td align="right">7738600</td>
<td align="left">Excision of fistula in ano</td>
</tr>
<tr>
<td align="right">7738611</td>
<td align="left">Excision of anal fistula</td>
</tr>
<tr>
<td align="right">7738.1</td>
<td align="left">Anal fistula operations</td>
</tr>
<tr>
<td align="right">7738900</td>
<td align="left">Repair of anal fistula using plug</td>
</tr>
<tr>
<td align="left">J531000</td>
<td align="left">Sub-mucosal anal fistula</td>
</tr>
<tr>
<td align="left">J531100</td>
<td align="left">Inter-muscular anal fistula</td>
</tr>
<tr>
<td align="left">J531200</td>
<td align="left">Ano-rectal fistula</td>
</tr>
<tr>
<td align="left">J531300</td>
<td align="left">Rectal fistula</td>
</tr>
<tr>
<td align="left">J531.00</td>
<td align="left">Fistula-in-ano</td>
</tr>
<tr>
<td align="left">J531z00</td>
<td align="left">Fistula-in-ano NOS</td>
</tr>
<tr>
<td align="left">J53..00</td>
<td align="left">Anal fissure and fistula</td>
</tr>
<tr>
<td align="left">J53z.00</td>
<td align="left">Anal fissure and fistula NOS</td>
</tr>
</tbody>
</table>
<h4>Secondary care diagnoses (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//secondary_care/ICD_anorectal_fistula.csv'>ICD_anorectal_fistula.csv</a>)</h4>
<table>
<thead>
<tr>
<th>ICD-10 code</th>
<th>ICD-10 Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left">K60.3</td>
<td align="left">Anal fistula</td>
</tr>
<tr>
<td align="left">K60.4</td>
<td align="left">Rectal fistula</td>
</tr>
<tr>
<td align="left">K60.5</td>
<td align="left">Anorectal fistula</td>
</tr>
</tbody>
</table>
<h4>Secondary care procedures (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//secondary_care/OPCS_anorectal_fistula.csv'>OPCS_anorectal_fistula.csv</a>)</h4>
<table>
<thead>
<tr>
<th>OPCS-4 code</th>
<th>OPCS-4 Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left">H55.1</td>
<td align="left">Laying open of low anal fistula</td>
</tr>
<tr>
<td align="left">H55.2</td>
<td align="left">Laying open of high anal fistula</td>
</tr>
<tr>
<td align="left">H55.3</td>
<td align="left">Laying open of anal fistula NEC</td>
</tr>
<tr>
<td align="left">H55.4</td>
<td align="left">Insertion of seton into high anal fistula and partial laying open of track HFQ</td>
</tr>
<tr>
<td align="left">H55.5</td>
<td align="left">Fistulography of anal fistula</td>
</tr>
<tr>
<td align="left">H55.6</td>
<td align="left">Probing of perineal fistula</td>
</tr>
<tr>
<td align="left">H55.7</td>
<td align="left">Repair of anal fistula using plug</td>
</tr>
</tbody>
</table>
<h2>Anorectal prolapse</h2>
<h4>Implementation</h4>
~~~
At the specified date, a patient is defined as having had 'Anorectal prolapse' IF they meet the criteria for any of the following on or before the specified date. The earliest date on which the individual meets any of the following criteria on or before the specified date is defined as the first event date:
Primary care
1. 'Anorectal prolapse' diagnosis or history of diagnosis or procedure during a consultation
OR
Secondary care
1. ALL diagnoses of 'Anorectal prolapse' or history of diagnosis during a hospitalization
OR
Secondary care (OPCS4)
1. ALL procedures for 'Anorectal prolapse' during a hospitalization
~~~
<h4>Primary care (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//primary_care/CPRD_anorectal_prolapse.csv'>CPRD_anorectal_prolapse.csv</a>)</h4>
<table>
<thead>
<tr>
<th>Read code</th>
<th>Read Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="right">7720</td>
<td align="left">Partial excision of rectum and sigmoid colon for prolapse</td>
</tr>
<tr>
<td align="left">7720y00</td>
<td align="left">Partial excision of rectum and sigmoid colon for prolapse OS</td>
</tr>
<tr>
<td align="left">7720z00</td>
<td align="left">Partial excision of rectum & sigmoid colon for prolapse NOS</td>
</tr>
<tr>
<td align="left">7723400.0</td>
<td align="left">Proctopexy for prolapse of rectum</td>
</tr>
<tr>
<td align="left">7723411.0</td>
<td align="left">Erickman repair of prolapse of rectum</td>
</tr>
<tr>
<td align="left">7723500.0</td>
<td align="left">Insertion of sponge for rectal prolapse</td>
</tr>
<tr>
<td align="left">7723511.0</td>
<td align="left">Insertion of Wells sponge for rectal prolapse</td>
</tr>
<tr>
<td align="left">7723.00</td>
<td align="left">Fixation of rectum for prolapse</td>
</tr>
<tr>
<td align="left">7723.11</td>
<td align="left">Proctopexy for prolapse of rectum</td>
</tr>
<tr>
<td align="left">7723.12</td>
<td align="left">Rectopexy for prolapse</td>
</tr>
<tr>
<td align="left">7723y00</td>
<td align="left">Other specified fixation of rectum for prolapse</td>
</tr>
<tr>
<td align="left">7723z00</td>
<td align="left">Fixation of rectum for prolapse NOS</td>
</tr>
<tr>
<td align="left">7724011.0</td>
<td align="left">Graham repair for rectal prolapse</td>
</tr>
<tr>
<td align="left">7724012.0</td>
<td align="left">Roscoe repair for rectal prolapse</td>
</tr>
<tr>
<td align="left">7724.00</td>
<td align="left">Other abdominal operations for rectal prolapse</td>
</tr>
<tr>
<td align="left">7724y00</td>
<td align="left">Other abdominal operation for rectal prolapse OS</td>
</tr>
<tr>
<td align="left">7724y11</td>
<td align="left">Delorme repair of rectum for prolapse</td>
</tr>
<tr>
<td align="left">7724z00</td>
<td align="left">Other abdominal operation for rectal prolapse NOS</td>
</tr>
<tr>
<td align="left">7726400.0</td>
<td align="left">Reduction of prolapsed rectum NEC</td>
</tr>
<tr>
<td align="left">7727011.0</td>
<td align="left">Thiersch wiring for prolapse of rectum</td>
</tr>
<tr>
<td align="left">7727400.0</td>
<td align="left">Excision of mucosal prolapse of rectum NEC</td>
</tr>
<tr>
<td align="left">7727500.0</td>
<td align="left">Perineal repair of rectal prolapse NEC</td>
</tr>
<tr>
<td align="left">7727.00</td>
<td align="left">Perineal operations for rectal prolapse</td>
</tr>
<tr>
<td align="left">7727y00</td>
<td align="left">Other specified perineal operation for rectal prolapse</td>
</tr>
<tr>
<td align="left">7727z00</td>
<td align="left">Perineal operation for rectal prolapse NOS</td>
</tr>
<tr>
<td align="left">7728400.0</td>
<td align="left">Manual reduction of rectal prolapse</td>
</tr>
<tr>
<td align="left">J571000</td>
<td align="left">Partial rectal prolapse</td>
</tr>
<tr>
<td align="left">J571100</td>
<td align="left">Complete rectal prolapse</td>
</tr>
<tr>
<td align="left">J571200</td>
<td align="left">Anal prolapse</td>
</tr>
<tr>
<td align="left">J571.00</td>
<td align="left">Rectal prolapse</td>
</tr>
<tr>
<td align="left">J571.11</td>
<td align="left">Procidentia - anus and/or rectum</td>
</tr>
<tr>
<td align="left">J571.12</td>
<td align="left">Proctoptosis</td>
</tr>
<tr>
<td align="left">J571z00</td>
<td align="left">Rectal prolapse NOS</td>
</tr>
<tr>
<td align="left">J579.00</td>
<td align="left">Rectal mucosa prolapse</td>
</tr>
</tbody>
</table>
<h4>Secondary care diagnoses (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//secondary_care/ICD_anorectal_prolapse.csv'>ICD_anorectal_prolapse.csv</a>)</h4>
<table>
<thead>
<tr>
<th>ICD-10 code</th>
<th>ICD-10 Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left">K62.2</td>
<td align="left">Anal prolapse</td>
</tr>
<tr>
<td align="left">K62.3</td>
<td align="left">Rectal prolapse</td>
</tr>
</tbody>
</table>
<h4>Secondary care procedures (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//secondary_care/OPCS_anorectal_prolapse.csv'>OPCS_anorectal_prolapse.csv</a>)</h4>
<table>
<thead>
<tr>
<th>OPCS-4 code</th>
<th>OPCS-4 Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left">H36</td>
<td align="left">Other abdominal operations for prolapse of rectum</td>
</tr>
<tr>
<td align="left">H36.1</td>
<td align="left">Abdominal repair of levator ani muscles</td>
</tr>
<tr>
<td align="left">H36.8</td>
<td align="left">Other specified other abdominal operations for prolapse of rectum</td>
</tr>
<tr>
<td align="left">H36.9</td>
<td align="left">Unspecified other abdominal operations for prolapse of rectum</td>
</tr>
<tr>
<td align="left">H42</td>
<td align="left">Perineal operations for prolapse of rectum</td>
</tr>
<tr>
<td align="left">H42.1</td>
<td align="left">Insertion of encircling suture around perianal sphincter</td>
</tr>
<tr>
<td align="left">H42.2</td>
<td align="left">Perineal plication of levator ani muscles and anal sphincters</td>
</tr>
<tr>
<td align="left">H42.3</td>
<td align="left">Insertion of supralevator sling</td>
</tr>
<tr>
<td align="left">H42.4</td>
<td align="left">Removal of encircling suture from around perianal sphincter</td>
</tr>
<tr>
<td align="left">H42.5</td>
<td align="left">Excision of mucosal prolapse of rectum NEC</td>
</tr>
<tr>
<td align="left">H42.6</td>
<td align="left">Perineal repair of prolapse of rectum NEC</td>
</tr>
<tr>
<td align="left">H42.8</td>
<td align="left">Other specified perineal operations for prolapse of rectum</td>
</tr>
<tr>
<td align="left">H42.9</td>
<td align="left">Unspecified perineal operations for prolapse of rectum</td>
</tr>
<tr>
<td align="left">H44.2</td>
<td align="left">Manual reduction of prolapse of rectum</td>
</tr>
</tbody>
</table>
<h2>Anorexia and bulimia nervosa</h2>
<h4>Implementation</h4>
~~~
At the specified date, a patient is defined as having had Anorexia and bulimia nervosa IF they meet the criteria for any of the following on or before the specified date. The earliest date on which the individual meets any of the following criteria on or before the specified date is defined as the first event date:
Primary care
1. Anorexia and bulimia nervosa diagnosis or history of diagnosis during a consultation
OR
Secondary care
1. ALL diagnoses of Anorexia and bulimia nervosa or history of diagnosis during a hospitalization
~~~
<h4>Primary care (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//primary_care/CPRD_eating_dz.csv'>CPRD_eating_dz.csv</a>)</h4>
<table>
<thead>
<tr>
<th>Read code</th>
<th>Read Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="right">1467</td>
<td align="left">H/O: anorexia nervosa</td>
</tr>
<tr>
<td align="left">E271.00</td>
<td align="left">Anorexia nervosa</td>
</tr>
<tr>
<td align="left">E275100</td>
<td align="left">Bulimia (non-organic overeating)</td>
</tr>
<tr>
<td align="left">Eu50000</td>
<td align="left">[X]Anorexia nervosa</td>
</tr>
<tr>
<td align="left">Eu50100</td>
<td align="left">[X]Atypical anorexia nervosa</td>
</tr>
<tr>
<td align="left">Eu50200</td>
<td align="left">[X]Bulimia nervosa</td>
</tr>
<tr>
<td align="left">Eu50211</td>
<td align="left">[X]Bulimia NOS</td>
</tr>
<tr>
<td align="left">Eu50300</td>
<td align="left">[X]Atypical bulimia nervosa</td>
</tr>
<tr>
<td align="left">R036011</td>
<td align="left">[D]Bulimia NOS</td>
</tr>
</tbody>
</table>
<h4>Secondary care diagnoses (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//secondary_care/ICD_eating_dz.csv'>ICD_eating_dz.csv</a>)</h4>
<table>
<thead>
<tr>
<th>ICD-10 code</th>
<th>ICD-10 Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left">F50.0</td>
<td align="left">Anorexia nervosa</td>
</tr>
<tr>
<td align="left">F50.1</td>
<td align="left">Atypical anorexia nervosa</td>
</tr>
<tr>
<td align="left">F50.2</td>
<td align="left">Bulimia nervosa</td>
</tr>
<tr>
<td align="left">F50.3</td>
<td align="left">Atypical bulimia nervosa</td>
</tr>
</tbody>
</table>
<h2>Anterior and Intermediate Uveitis</h2>
<h4>Implementation</h4>
~~~
At the specified date, a patient is defined as having had Anterior and Intermediate Uveitis IF they meet the criteria for any of the following on or before the specified date. The earliest date on which the individual meets any of the following criteria on or before the specified date is defined as the first event date:
Primary care
1. Anterior and Intermediate Uveitis diagnosis or history of diagnosis during a consultation
OR
Secondary care
1. ALL diagnoses of Anterior and Intermediate Uveitis or history of diagnosis during a hospitalization
~~~
<h4>Primary care (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//primary_care/CPRD_ant_uveitis.csv'>CPRD_ant_uveitis.csv</a>)</h4>
<table>
<thead>
<tr>
<th>Read code</th>
<th>Read Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="right">1486</td>
<td align="left">H/O: iritis</td>
</tr>
<tr>
<td align="left">A173300</td>
<td align="left">Tuberculous chronic iridocyclitis</td>
</tr>
<tr>
<td align="left">A532200</td>
<td align="left">Herpes zoster iridocyclitis</td>
</tr>
<tr>
<td align="left">A544400</td>
<td align="left">Herpes simplex iridocyclitis</td>
</tr>
<tr>
<td align="left">A984100</td>
<td align="left">Gonococcal iridocyclitis</td>
</tr>
<tr>
<td align="left">C34y300</td>
<td align="left">Gouty iritis</td>
</tr>
<tr>
<td align="left">F432300</td>
<td align="left">Posterior cyclitis</td>
</tr>
<tr>
<td align="left">F432311</td>
<td align="left">Pars planitis</td>
</tr>
<tr>
<td align="left">F440000</td>
<td align="left">Unspecified acute iridocyclitis</td>
</tr>
<tr>
<td align="left">F440100</td>
<td align="left">Unspecified subacute iridocyclitis</td>
</tr>
<tr>
<td align="left">F440200</td>
<td align="left">Primary iridocyclitis</td>
</tr>
<tr>
<td align="left">F440300</td>
<td align="left">Recurrent iridocyclitis</td>
</tr>
<tr>
<td align="left">F440400</td>
<td align="left">Secondary infected iridocyclitis</td>
</tr>
<tr>
<td align="left">F440500</td>
<td align="left">Secondary noninfected iridocyclitis</td>
</tr>
<tr>
<td align="left">F440600</td>
<td align="left">Hypopyon</td>
</tr>
<tr>
<td align="left">F440700</td>
<td align="left">Diabetic iritis</td>
</tr>
<tr>
<td align="left">F440.00</td>
<td align="left">Acute and subacute iridocyclitis</td>
</tr>
<tr>
<td align="left">F440.11</td>
<td align="left">Iritis - acute</td>
</tr>
<tr>
<td align="left">F440z00</td>
<td align="left">Acute or subacute iritis NOS</td>
</tr>
<tr>
<td align="left">F441000</td>
<td align="left">Unspecified chronic iridocyclitis</td>
</tr>
<tr>
<td align="left">F441100</td>
<td align="left">Chronic iridocyclitis due to disease EC</td>
</tr>
<tr>
<td align="left">F441200</td>
<td align="left">Chronic anterior uveitis</td>
</tr>
<tr>
<td align="left">F441.00</td>
<td align="left">Chronic iridocyclitis</td>
</tr>
<tr>
<td align="left">F441.11</td>
<td align="left">Chronic iritis</td>
</tr>
<tr>
<td align="left">F441z00</td>
<td align="left">Chronic iridocyclitis NOS</td>
</tr>
<tr>
<td align="left">F442000</td>
<td align="left">Fuchs' heterochromic cyclitis</td>
</tr>
<tr>
<td align="left">F442100</td>
<td align="left">Glaucomatocyclitic crises</td>
</tr>
<tr>
<td align="left">F442200</td>
<td align="left">Lens-induced iridocyclitis</td>
</tr>
<tr>
<td align="left">F442.00</td>
<td align="left">Certain types of iridocyclitis</td>
</tr>
<tr>
<td align="left">F442z00</td>
<td align="left">Certain types of cyclitis NOS</td>
</tr>
<tr>
<td align="left">F443000</td>
<td align="left">Anterior uveitis</td>
</tr>
<tr>
<td align="left">F443100</td>
<td align="left">Iritis</td>
</tr>
<tr>
<td align="left">F443.00</td>
<td align="left">Unspecified iridocyclitis</td>
</tr>
<tr>
<td align="left">F443.11</td>
<td align="left">Uveitis NOS</td>
</tr>
<tr>
<td align="left">F44..12</td>
<td align="left">Iridocyclitis</td>
</tr>
</tbody>
</table>
<h4>Secondary care diagnoses (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//secondary_care/ICD_ant_uveitis.csv'>ICD_ant_uveitis.csv</a>)</h4>
<table>
<thead>
<tr>
<th>ICD-10 code</th>
<th>ICD-10 Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left">H20.0</td>
<td align="left">Acute and subacute iridocyclitis</td>
</tr>
<tr>
<td align="left">H20.1</td>
<td align="left">Chronic iridocyclitis</td>
</tr>
<tr>
<td align="left">H20.2</td>
<td align="left">Lens-induced iridocyclitis</td>
</tr>
<tr>
<td align="left">H20.8</td>
<td align="left">Other iridocyclitis</td>
</tr>
<tr>
<td align="left">H20.9</td>
<td align="left">Iridocyclitis, unspecified</td>
</tr>
<tr>
<td align="left">H22.0</td>
<td align="left">Iridocyclitis in infectious and parasitic diseases classified elsewhere</td>
</tr>
<tr>
<td align="left">H22.1</td>
<td align="left">Iridocyclitis in other diseases classified elsewhere</td>
</tr>
<tr>
<td align="left">H30.2</td>
<td align="left">Posterior cyclitis</td>
</tr>
</tbody>
</table>
<h2>Anxiety disorders</h2>
<h4>Implementation</h4>
~~~
At the specified date, a patient is defined as having had 'Anxiety disorders' disorders IF they meet the criteria for any of the following on or before the specified date. The earliest date on which the individual meets any of the following criteria on or before the specified date is defined as the first event date:
Primary care
1. 'Anxiety disorders' disorders diagnosis or history of diagnosis during a consultation
OR
Secondary care
1. ALL diagnoses of 'Anxiety disorders' disorders or history of diagnosis during a hospitalization
~~~
<h4>Primary care (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//primary_care/CPRD_anxiety.csv'>CPRD_anxiety.csv</a>)</h4>
<table>
<thead>
<tr>
<th>Read code</th>
<th>Read Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="right">1466</td>
<td align="left">H/O: anxiety state</td>
</tr>
<tr>
<td align="left">146G.00</td>
<td align="left">H/O: agoraphobia</td>
</tr>
<tr>
<td align="left">1B1H.11</td>
<td align="left">Fear</td>
</tr>
<tr>
<td align="left">1B1V.00</td>
<td align="left">C/O - panic attack</td>
</tr>
<tr>
<td align="left">1Bb..00</td>
<td align="left">Specific fear</td>
</tr>
<tr>
<td align="left">225J.00</td>
<td align="left">O/E - panic attack</td>
</tr>
<tr>
<td align="left">225K.00</td>
<td align="left">O/E - fearful mood</td>
</tr>
<tr>
<td align="left">285..00</td>
<td align="left">Neurotic condition, insight present</td>
</tr>
<tr>
<td align="left">286..00</td>
<td align="left">Poor insight into neurotic condition</td>
</tr>
<tr>
<td align="left">8G52.00</td>
<td align="left">Antiphobic therapy</td>
</tr>
<tr>
<td align="left">8G94.00</td>
<td align="left">Anxiety management training</td>
</tr>
<tr>
<td align="left">8HHp.00</td>
<td align="left">Referral for guided self-help for anxiety</td>
</tr>
<tr>
<td align="left">9N54.00</td>
<td align="left">Encounter for fear</td>
</tr>
<tr>
<td align="left">E200000</td>
<td align="left">Anxiety state unspecified</td>
</tr>
<tr>
<td align="left">E200100</td>
<td align="left">Panic disorder</td>
</tr>
<tr>
<td align="left">E200111</td>
<td align="left">Panic attack</td>
</tr>
<tr>
<td align="left">E200200</td>
<td align="left">Generalised anxiety disorder</td>
</tr>
<tr>
<td align="left">E200300</td>
<td align="left">Anxiety with depression</td>
</tr>
<tr>
<td align="left">E200400</td>
<td align="left">Chronic anxiety</td>
</tr>
<tr>
<td align="left">E200500</td>
<td align="left">Recurrent anxiety</td>
</tr>
<tr>
<td align="left">E200.00</td>
<td align="left">Anxiety states</td>
</tr>
<tr>
<td align="left">E200z00</td>
<td align="left">Anxiety state NOS</td>
</tr>
<tr>
<td align="left">E201B00</td>
<td align="left">Compensation neurosis</td>
</tr>
<tr>
<td align="left">E202000</td>
<td align="left">Phobia unspecified</td>
</tr>
<tr>
<td align="left">E202100</td>
<td align="left">Agoraphobia with panic attacks</td>
</tr>
<tr>
<td align="left">E202200</td>
<td align="left">Agoraphobia without mention of panic attacks</td>
</tr>
<tr>
<td align="left">E202300</td>
<td align="left">Social phobia, fear of eating in public</td>
</tr>
<tr>
<td align="left">E202400</td>
<td align="left">Social phobia, fear of public speaking</td>
</tr>
<tr>
<td align="left">E202500</td>
<td align="left">Social phobia, fear of public washing</td>
</tr>
<tr>
<td align="left">E202600</td>
<td align="left">Acrophobia</td>
</tr>
<tr>
<td align="left">E202700</td>
<td align="left">Animal phobia</td>
</tr>
<tr>
<td align="left">E202800</td>
<td align="left">Claustrophobia</td>
</tr>
<tr>
<td align="left">E202900</td>
<td align="left">Fear of crowds</td>
</tr>
<tr>
<td align="left">E202A00</td>
<td align="left">Fear of flying</td>
</tr>
<tr>
<td align="left">E202B00</td>
<td align="left">Cancer phobia</td>
</tr>
<tr>
<td align="left">E202C00</td>
<td align="left">Dental phobia</td>
</tr>
<tr>
<td align="left">E202D00</td>
<td align="left">Fear of death</td>
</tr>
<tr>
<td align="left">E202.00</td>
<td align="left">Phobic disorders</td>
</tr>
<tr>
<td align="left">E202.11</td>
<td align="left">Social phobic disorders</td>
</tr>
<tr>
<td align="left">E202.12</td>
<td align="left">Phobic anxiety</td>
</tr>
<tr>
<td align="left">E202E00</td>
<td align="left">Fear of pregnancy</td>
</tr>
<tr>
<td align="left">E202z00</td>
<td align="left">Phobic disorder NOS</td>
</tr>
<tr>
<td align="left">E20..00</td>
<td align="left">Neurotic disorders</td>
</tr>
<tr>
<td align="left">E20y100</td>
<td align="left">Writer's cramp neurosis</td>
</tr>
<tr>
<td align="left">E20y200</td>
<td align="left">Other occupational neurosis</td>
</tr>
<tr>
<td align="left">E20y300</td>
<td align="left">Psychasthenic neurosis</td>
</tr>
<tr>
<td align="left">E20y.00</td>
<td align="left">Other neurotic disorders</td>
</tr>
<tr>
<td align="left">E20yz00</td>
<td align="left">Other neurotic disorder NOS</td>
</tr>
<tr>
<td align="left">E20z.00</td>
<td align="left">Neurotic disorder NOS</td>
</tr>
<tr>
<td align="left">Eu34111</td>
<td align="left">[X]Depressive neurosis</td>
</tr>
<tr>
<td align="left">Eu34113</td>
<td align="left">[X]Neurotic depression</td>
</tr>
<tr>
<td align="left">Eu34114</td>
<td align="left">[X]Persistant anxiety depression</td>
</tr>
<tr>
<td align="left">Eu40000</td>
<td align="left">[X]Agoraphobia</td>
</tr>
<tr>
<td align="left">Eu40011</td>
<td align="left">[X]Agoraphobia without history of panic disorder</td>
</tr>
<tr>
<td align="left">Eu40012</td>
<td align="left">[X]Panic disorder with agoraphobia</td>
</tr>
<tr>
<td align="left">Eu40100</td>
<td align="left">[X]Social phobias</td>
</tr>
<tr>
<td align="left">Eu40112</td>
<td align="left">[X]Social neurosis</td>
</tr>
<tr>
<td align="left">Eu40200</td>
<td align="left">[X]Specific (isolated) phobias</td>
</tr>
<tr>
<td align="left">Eu40211</td>
<td align="left">[X]Acrophobia</td>
</tr>
<tr>
<td align="left">Eu40212</td>
<td align="left">[X]Animal phobias</td>
</tr>
<tr>
<td align="left">Eu40213</td>
<td align="left">[X]Claustrophobia</td>
</tr>
<tr>
<td align="left">Eu40214</td>
<td align="left">[X]Simple phobia</td>
</tr>
<tr>
<td align="left">Eu40300</td>
<td align="left">[X]Needle phobia</td>
</tr>
<tr>
<td align="left">Eu40.00</td>
<td align="left">[X]Phobic anxiety disorders</td>
</tr>
<tr>
<td align="left">Eu40y00</td>
<td align="left">[X]Other phobic anxiety disorders</td>
</tr>
<tr>
<td align="left">Eu40z00</td>
<td align="left">[X]Phobic anxiety disorder, unspecified</td>
</tr>
<tr>
<td align="left">Eu40z11</td>
<td align="left">[X]Phobia NOS</td>
</tr>
<tr>
<td align="left">Eu40z12</td>
<td align="left">[X]Phobic state NOS</td>
</tr>
<tr>
<td align="left">Eu41000</td>
<td align="left">[X]Panic disorder [episodic paroxysmal anxiety]</td>
</tr>
<tr>
<td align="left">Eu41011</td>
<td align="left">[X]Panic attack</td>
</tr>
<tr>
<td align="left">Eu41012</td>
<td align="left">[X]Panic state</td>
</tr>
<tr>
<td align="left">Eu41100</td>
<td align="left">[X]Generalized anxiety disorder</td>
</tr>
<tr>
<td align="left">Eu41111</td>
<td align="left">[X]Anxiety neurosis</td>
</tr>
<tr>
<td align="left">Eu41112</td>
<td align="left">[X]Anxiety reaction</td>
</tr>
<tr>
<td align="left">Eu41113</td>
<td align="left">[X]Anxiety state</td>
</tr>
<tr>
<td align="left">Eu41200</td>
<td align="left">[X]Mixed anxiety and depressive disorder</td>
</tr>
<tr>
<td align="left">Eu41211</td>
<td align="left">[X]Mild anxiety depression</td>
</tr>
<tr>
<td align="left">Eu41300</td>
<td align="left">[X]Other mixed anxiety disorders</td>
</tr>
<tr>
<td align="left">Eu41.00</td>
<td align="left">[X]Other anxiety disorders</td>
</tr>
<tr>
<td align="left">Eu41y00</td>
<td align="left">[X]Other specified anxiety disorders</td>
</tr>
<tr>
<td align="left">Eu41y11</td>
<td align="left">[X]Anxiety hysteria</td>
</tr>
<tr>
<td align="left">Eu41z00</td>
<td align="left">[X]Anxiety disorder, unspecified</td>
</tr>
<tr>
<td align="left">Eu41z11</td>
<td align="left">[X]Anxiety NOS</td>
</tr>
<tr>
<td align="left">Z481.00</td>
<td align="left">Phobia counselling</td>
</tr>
<tr>
<td align="left">Z4L1.00</td>
<td align="left">Anxiety counselling</td>
</tr>
<tr>
<td align="left">ZV11200</td>
<td align="left">[V]Personal history of neurosis</td>
</tr>
</tbody>
</table>
<h4>Secondary care diagnoses (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//secondary_care/ICD_anxiety.csv'>ICD_anxiety.csv</a>)</h4>
<table>
<thead>
<tr>
<th>ICD-10 code</th>
<th>ICD-10 Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left">F40</td>
<td align="left">Phobic anxiety disorders</td>
</tr>
<tr>
<td align="left">F41</td>
<td align="left">Other anxiety disorders</td>
</tr>
</tbody>
</table>
<h2>Aplastic anaemias</h2>
<h4>Implementation</h4>
~~~
At the specified date, a patient is defined as having had 'Aplastic anaemias' IF they meet the criteria for any of the following on or before the specified date. The earliest date on which the individual meets any of the following criteria on or before the specified date is defined as the first event date:
Primary care
1. 'Aplastic anaemias' diagnosis or history of diagnosis during a consultation
OR
Secondary care (ICD10)
1. ALL diagnoses of 'Aplastic anaemias' or history of diagnosis during a hospitalization
~~~
<h4>Primary care (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//primary_care/CPRD_aplastic.csv'>CPRD_aplastic.csv</a>)</h4>
<table>
<thead>
<tr>
<th>Read code</th>
<th>Read Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left">D200000</td>
<td align="left">Congenital hypoplastic anaemia</td>
</tr>
<tr>
<td align="left">D200011</td>
<td align="left">Constitutional aplastic anaemia without malformation</td>
</tr>
<tr>
<td align="left">D200100</td>
<td align="left">Fanconi's familial refractory anaemia</td>
</tr>
<tr>
<td align="left">D200111</td>
<td align="left">Fanconi's hypoplastic anaemia</td>
</tr>
<tr>
<td align="left">D200200</td>
<td align="left">Constitutional aplastic anaemia with malformation</td>
</tr>
<tr>
<td align="left">D200211</td>
<td align="left">Pancytopenia-dysmelia</td>
</tr>
<tr>
<td align="left">D200300</td>
<td align="left">Constitutional red cell aplasia and hypoplasia</td>
</tr>
<tr>
<td align="left">D200311</td>
<td align="left">Blackfan - Diamond syndrome</td>
</tr>
<tr>
<td align="left">D200312</td>
<td align="left">Congenital pure red cell aplasia</td>
</tr>
<tr>
<td align="left">D200313</td>
<td align="left">Constitutional red cell hypoplasia</td>
</tr>
<tr>
<td align="left">D200314</td>
<td align="left">Congenital red cell hypoplasia</td>
</tr>
<tr>
<td align="left">D200400</td>
<td align="left">Erythrogenesis imperfecta</td>
</tr>
<tr>
<td align="left">D200.00</td>
<td align="left">Constitutional aplastic anaemia</td>
</tr>
<tr>
<td align="left">D200.13</td>
<td align="left">Blackfan - Diamond syndrome</td>
</tr>
<tr>
<td align="left">D200.15</td>
<td align="left">Hypoplastic anaemia - familial</td>
</tr>
<tr>
<td align="left">D200y00</td>
<td align="left">Other specified constitutional aplastic anaemia</td>
</tr>
<tr>
<td align="left">D201000</td>
<td align="left">Aplastic anaemia due to chronic disease</td>
</tr>
<tr>
<td align="left">D201100</td>
<td align="left">Aplastic anaemia due to drugs</td>
</tr>
<tr>
<td align="left">D201111</td>
<td align="left">Hypoplastic anaemia due to drug or chemical substance</td>
</tr>
<tr>
<td align="left">D201200</td>
<td align="left">Aplastic anaemia due to infection</td>
</tr>
<tr>
<td align="left">D201211</td>
<td align="left">Hypoplastic anaemia due to infection</td>
</tr>
<tr>
<td align="left">D201311</td>
<td align="left">Radiation aplastic anaemia</td>
</tr>
<tr>
<td align="left">D201400</td>
<td align="left">Aplastic anaemia due to toxic cause</td>
</tr>
<tr>
<td align="left">D201412</td>
<td align="left">Hypoplastic anaemia due to toxic cause</td>
</tr>
<tr>
<td align="left">D201500</td>
<td align="left">Pancytopenia - acquired</td>
</tr>
<tr>
<td align="left">D201600</td>
<td align="left">Pancytopenia NOS</td>
</tr>
<tr>
<td align="left">D201611</td>
<td align="left">Pancytopenia with malformation</td>
</tr>
<tr>
<td align="left">D201612</td>
<td align="left">Pancytopenia with pancreatitis</td>
</tr>
<tr>
<td align="left">D201700</td>
<td align="left">Transient hypoplastic anaemia</td>
</tr>
<tr>
<td align="left">D201800</td>
<td align="left">[X]Pure red cell aplasia</td>
</tr>
<tr>
<td align="left">D201.00</td>
<td align="left">Acquired aplastic anaemia</td>
</tr>
<tr>
<td align="left">D201.11</td>
<td align="left">Normocytic anaemia due to aplasia</td>
</tr>
<tr>
<td align="left">D201z00</td>
<td align="left">Acquired aplastic anaemia NOS</td>
</tr>
<tr>
<td align="left">D201z12</td>
<td align="left">Red cell hypoplasia</td>
</tr>
<tr>
<td align="left">D201z13</td>
<td align="left">Secondary red cell hypoplasia NEC</td>
</tr>
<tr>
<td align="left">D201z14</td>
<td align="left">Secondary red cell aplasia NEC</td>
</tr>
<tr>
<td align="left">D202.00</td>
<td align="left">Chronic acquired pure red cell aplasia</td>
</tr>
<tr>
<td align="left">D203000</td>
<td align="left">Transient erythroblastopenia of childhood</td>
</tr>
<tr>
<td align="left">D203.00</td>
<td align="left">Transient acquired pure red cell aplasia</td>
</tr>
<tr>
<td align="left">D204.00</td>
<td align="left">Idiopathic aplastic anaemia</td>
</tr>
<tr>
<td align="left">D20..00</td>
<td align="left">Aplastic anaemia</td>
</tr>
<tr>
<td align="left">D20X.00</td>
<td align="left">Acquired pure red cell aplasia, unspecified</td>
</tr>
<tr>
<td align="left">D20z.00</td>
<td align="left">Aplastic anaemia NOS</td>
</tr>
</tbody>
</table>
<h4>Secondary care diagnoses (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//secondary_care/ICD_aplastic.csv'>ICD_aplastic.csv</a>)</h4>
<table>
<thead>
<tr>
<th>ICD-10 code</th>
<th>ICD-10 Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left">D60</td>
<td align="left">Acquired pure red cell aplasia [erythroblastopenia]</td>
</tr>
<tr>
<td align="left">D61</td>
<td align="left">Other aplastic anaemias</td>
</tr>
</tbody>
</table>
<h2>Appendicitis</h2>
<h4>Implementation</h4>
~~~
At the specified date, a patient is defined as having had 'Appendicitis' IF they meet the criteria for any of the following on or before the specified date. The earliest date on which the individual meets any of the following criteria on or before the specified date is defined as the first event date:
Primary care
1. 'Appendicitis' diagnosis or history of diagnosis or procedure during a consultation
OR
Secondary care
1. ALL diagnoses of 'Appendicitis' or history of diagnosis during a hospitalization
OR
Secondary care (OPCS4)
1. ALL procedures for 'Appendicitis' during a hospitalization
~~~
<h4>Primary care (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//primary_care/CPRD_appendicitis.csv'>CPRD_appendicitis.csv</a>)</h4>
<table>
<thead>
<tr>
<th>Read code</th>
<th>Read Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left">14C2.00</td>
<td align="left">H/O: appendicitis</td>
</tr>
<tr>
<td align="left">25J6.00</td>
<td align="left">Appendix mass</td>
</tr>
<tr>
<td align="left">7700000.0</td>
<td align="left">Emergency excision of abnormal appendix and drainage HFQ</td>
</tr>
<tr>
<td align="left">7700100.0</td>
<td align="left">Emergency excision of abnormal appendix NEC</td>
</tr>
<tr>
<td align="left">7700300.0</td>
<td align="left">Emergency appendicectomy NEC</td>
</tr>
<tr>
<td align="left">7700400.0</td>
<td align="left">Endoscopic emergency appendicectomy</td>
</tr>
<tr>
<td align="left">7700.00</td>
<td align="left">Emergency excision of appendix</td>
</tr>
<tr>
<td align="left">7700.11</td>
<td align="left">Emergency appendicectomy</td>
</tr>
<tr>
<td align="left">7700y00</td>
<td align="left">Other specified emergency excision of appendix</td>
</tr>
<tr>
<td align="left">7700z00</td>
<td align="left">Emergency excision of appendix NOS</td>
</tr>
<tr>
<td align="left">7701000.0</td>
<td align="left">Interval appendicectomy</td>
</tr>
<tr>
<td align="left">7701300.0</td>
<td align="left">Planned delayed appendicectomy NEC</td>
</tr>
<tr>
<td align="left">7701400.0</td>
<td align="left">Endoscopic appendicectomy NEC</td>
</tr>
<tr>
<td align="left">7701.00</td>
<td align="left">Other excision of appendix</td>
</tr>
<tr>
<td align="left">7701.11</td>
<td align="left">Non emergency appendicectomy</td>
</tr>
<tr>
<td align="left">7701y00</td>
<td align="left">Other specified other excision of appendix</td>
</tr>
<tr>
<td align="left">7701z00</td>
<td align="left">Other excision of appendix NOS</td>
</tr>
<tr>
<td align="left">7701z11</td>
<td align="left">Appendicectomy NEC</td>
</tr>
<tr>
<td align="left">7702000.0</td>
<td align="left">Drainage of abscess of appendix</td>
</tr>
<tr>
<td align="left">7702100.0</td>
<td align="left">Drainage of appendix NEC</td>
</tr>
<tr>
<td align="left">J200.00</td>
<td align="left">Acute appendicitis with peritonitis</td>
</tr>
<tr>
<td align="left">J201.00</td>
<td align="left">Acute appendicitis with appendix abscess</td>
</tr>
<tr>
<td align="left">J201.11</td>
<td align="left">Abscess of appendix</td>
</tr>
<tr>
<td align="left">J201.12</td>
<td align="left">Appendix abscess</td>
</tr>
<tr>
<td align="left">J202.00</td>
<td align="left">Acute appendicitis without peritonitis</td>
</tr>
<tr>
<td align="left">J203.00</td>
<td align="left">Acute appendicitis with generalised peritonitis</td>
</tr>
<tr>
<td align="left">J204.00</td>
<td align="left">Acute appendicitis with localised peritonitis</td>
</tr>
<tr>
<td align="left">J20..00</td>
<td align="left">Acute appendicitis</td>
</tr>
<tr>
<td align="left">J20z100</td>
<td align="left">Acute gangrenous appendicitis</td>
</tr>
<tr>
<td align="left">J20z.00</td>
<td align="left">Acute appendicitis NOS</td>
</tr>
<tr>
<td align="left">J21..00</td>
<td align="left">Appendicitis, unqualified</td>
</tr>
<tr>
<td align="left">J220.00</td>
<td align="left">Subacute appendicitis</td>
</tr>
<tr>
<td align="left">J221.00</td>
<td align="left">Chronic appendicitis</td>
</tr>
<tr>
<td align="left">J222.00</td>
<td align="left">Relapsing appendicitis</td>
</tr>
<tr>
<td align="left">J223.00</td>
<td align="left">Recurrent appendicitis</td>
</tr>
<tr>
<td align="left">J22..00</td>
<td align="left">Other appendicitis</td>
</tr>
<tr>
<td align="left">J22z.00</td>
<td align="left">Other appendicitis NOS</td>
</tr>
<tr>
<td align="left">Jyu2000</td>
<td align="left">[X]Other appendicitis</td>
</tr>
</tbody>
</table>
<h4>Secondary care diagnoses (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//secondary_care/ICD_appendicitis.csv'>ICD_appendicitis.csv</a>)</h4>
<table>
<thead>
<tr>
<th>ICD-10 code</th>
<th>ICD-10 Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left">K35</td>
<td align="left">Acute appendicitis</td>
</tr>
<tr>
<td align="left">K36</td>
<td align="left">Other appendicitis</td>
</tr>
<tr>
<td align="left">K37</td>
<td align="left">Unspecified appendicitis</td>
</tr>
</tbody>
</table>
<h4>Secondary care procedures (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//secondary_care/OPCS_appendicitis.csv'>OPCS_appendicitis.csv</a>)</h4>
<table>
<thead>
<tr>
<th>OPCS-4 code</th>
<th>OPCS-4 Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left">H01</td>
<td align="left">Emergency excision of appendix</td>
</tr>
<tr>
<td align="left">H01.1</td>
<td align="left">Emergency excision of abnormal appendix and drainage HFQ</td>
</tr>
<tr>
<td align="left">H01.2</td>
<td align="left">Emergency excision of abnormal appendix NEC</td>
</tr>
<tr>
<td align="left">H01.8</td>
<td align="left">Other specified emergency excision of appendix</td>
</tr>
<tr>
<td align="left">H01.9</td>
<td align="left">Unspecified emergency excision of appendix</td>
</tr>
<tr>
<td align="left">H02</td>
<td align="left">Other excision of appendix</td>
</tr>
<tr>
<td align="left">H02.1</td>
<td align="left">Interval appendicectomy</td>
</tr>
<tr>
<td align="left">H02.2</td>
<td align="left">Planned delayed appendicectomy NEC</td>
</tr>
<tr>
<td align="left">H02.3</td>
<td align="left">Prophylactic appendicectomy NEC</td>
</tr>
<tr>
<td align="left">H02.8</td>
<td align="left">Other specified other excision of appendix</td>
</tr>
<tr>
<td align="left">H02.9</td>
<td align="left">Unspecified other excision of appendix</td>
</tr>
<tr>
<td align="left">H03</td>
<td align="left">Other operations on appendix</td>
</tr>
<tr>
<td align="left">H03.1</td>
<td align="left">Drainage of abscess of appendix</td>
</tr>
<tr>
<td align="left">H03.2</td>
<td align="left">Drainage of appendix NEC</td>
</tr>
</tbody>
</table>
<h2>Asbestosis</h2>
<h4>Implementation</h4>
~~~
At the specified date, a patient is defined as having had 'Asbestosis' IF they meet the criteria for any of the following on or before the specified date. The earliest date on which the individual meets any of the following criteria on or before the specified date is defined as the first event date:
Primary care
1. 'Asbestosis' diagnosis or history of diagnosis during a consultation
OR
Secondary care (ICD10)
1. ALL diagnoses of 'Asbestosis' or history of diagnosis during a hospitalization
~~~
<h4>Primary care (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//primary_care/CPRD_asbestosis.csv'>CPRD_asbestosis.csv</a>)</h4>
<table>
<thead>
<tr>
<th>Read code</th>
<th>Read Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left">H410.00</td>
<td align="left">Pleural plaque disease due to asbestosis</td>
</tr>
<tr>
<td align="left">H410.11</td>
<td align="left">Asbestos-induced pleural plaque</td>
</tr>
<tr>
<td align="left">H41..00</td>
<td align="left">Asbestosis</td>
</tr>
<tr>
<td align="left">H41z.00</td>
<td align="left">Asbestosis NOS</td>
</tr>
</tbody>
</table>
<h4>Secondary care diagnoses (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//secondary_care/ICD_asbestosis.csv'>ICD_asbestosis.csv</a>)</h4>
<table>
<thead>
<tr>
<th>ICD-10 code</th>
<th>ICD-10 Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left">J61</td>
<td align="left">Pneumoconiosis due to asbestos and other mineral fibres</td>
</tr>
</tbody>
</table>
<h2>Aspiration pneumonitis</h2>
<h4>Implementation</h4>
~~~
At the specified date, a patient is defined as having had 'Aspiration pneumonitis' IF they meet the criteria for any of the following on or before the specified date. The earliest date on which the individual meets any of the following criteria on or before the specified date is defined as the first event date:
Primary care
1. 'Aspiration pneumonitis' diagnosis or history of diagnosis during a consultation
OR
Secondary care (ICD10)
1. ALL diagnoses of 'Aspiration pneumonitis' or history of diagnosis during a hospitalization
~~~
<h4>Primary care (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//primary_care/CPRD_aspiration_pneumo.csv'>CPRD_aspiration_pneumo.csv</a>)</h4>
<table>
<thead>
<tr>
<th>Read code</th>
<th>Read Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left">H470000</td>
<td align="left">Pneumonitis due to inhalation of regurgitated food</td>
</tr>
<tr>
<td align="left">H470100</td>
<td align="left">Pneumonitis due to inhalation of gastric secretions</td>
</tr>
<tr>
<td align="left">H470200</td>
<td align="left">Pneumonitis due to inhalation of milk</td>
</tr>
<tr>
<td align="left">H470211</td>
<td align="left">Milk inhalation pneumonitis</td>
</tr>
<tr>
<td align="left">H470300</td>
<td align="left">Pneumonitis due to inhalation of vomitus</td>
</tr>
<tr>
<td align="left">H470311</td>
<td align="left">Vomit inhalation pneumonitis</td>
</tr>
<tr>
<td align="left">H470312</td>
<td align="left">Aspiration pneumonia due to vomit</td>
</tr>
<tr>
<td align="left">H470.00</td>
<td align="left">Pneumonitis due to inhalation of food or vomitus</td>
</tr>
<tr>
<td align="left">H470.11</td>
<td align="left">Aspiration pneumonia</td>
</tr>
<tr>
<td align="left">H470z00</td>
<td align="left">Pneumonitis due to inhalation of food or vomitus NOS</td>
</tr>
<tr>
<td align="left">H471000</td>
<td align="left">Lipoid pneumonia (exogenous)</td>
</tr>
<tr>
<td align="left">H471.00</td>
<td align="left">Pneumonitis due to inhalation of oil or essence</td>
</tr>
<tr>
<td align="left">H471z00</td>
<td align="left">Pneumonitis due to inhalation of oil or essence NOS</td>
</tr>
<tr>
<td align="left">H47..00</td>
<td align="left">Pneumonitis due to inhalation of solids or liquids</td>
</tr>
<tr>
<td align="left">H47..11</td>
<td align="left">Aspiration pneumonitis</td>
</tr>
<tr>
<td align="left">H47y.00</td>
<td align="left">Pneumonitis due to inhalation of other solid or liquid</td>
</tr>
<tr>
<td align="left">H47yz00</td>
<td align="left">Pneumonitis due to inhalation of solid or liquid NOS</td>
</tr>
<tr>
<td align="left">H47z.00</td>
<td align="left">Pneumonitis due to inhalation of solid or liquid NOS</td>
</tr>
<tr>
<td align="left">Hyu4700</td>
<td align="left">[X]Pneumonitis due to inhalation of other solids and liquids</td>
</tr>
<tr>
<td align="left">SP13100</td>
<td align="left">Other aspiration pneumonia as a complication of care</td>
</tr>
</tbody>
</table>
<h4>Secondary care diagnoses (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//secondary_care/ICD_aspiration_pneumo.csv'>ICD_aspiration_pneumo.csv</a>)</h4>
<table>
<thead>
<tr>
<th>ICD-10 code</th>
<th>ICD-10 Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left">J69.0</td>
<td align="left">Pneumonitis due to food and vomit</td>
</tr>
<tr>
<td align="left">J69.1</td>
<td align="left">Pneumonitis due to oils and essences</td>
</tr>
<tr>
<td align="left">J69.8</td>
<td align="left">Pneumonitis due to other solids and liquids</td>
</tr>
</tbody>
</table>
<h2>Asthma</h2>
<h4>Implementation</h4>
~~~
At the specified date, a patient is defined as having had 'Asthma' IF they meet the criteria for any of the following on or before the specified date. The earliest date on which the individual meets any of the following criteria on or before the specified date is defined as the first event date:
Primary care
1. 'Asthma' diagnosis or history of diagnosis during a consultation
OR
Secondary care (ICD10)
1. ALL diagnoses of 'Asthma' or history of diagnosis during a hospitalization
~~~
<h4>Primary care (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//primary_care/CPRD_asthma.csv'>CPRD_asthma.csv</a>)</h4>
<table>
<thead>
<tr>
<th>Read code</th>
<th>Read Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left">14B4.00</td>
<td align="left">H/O: asthma</td>
</tr>
<tr>
<td align="left">173A.00</td>
<td align="left">Exercise induced asthma</td>
</tr>
<tr>
<td align="left">173c.00</td>
<td align="left">Occupational asthma</td>
</tr>
<tr>
<td align="left">173d.00</td>
<td align="left">Work aggravated asthma</td>
</tr>
<tr>
<td align="left">1780.00</td>
<td align="left">Aspirin induced asthma</td>
</tr>
<tr>
<td align="left">1O2..00</td>
<td align="left">Asthma confirmed</td>
</tr>
<tr>
<td align="left">2126200.0</td>
<td align="left">Asthma resolved</td>
</tr>
<tr>
<td align="left">212G.00</td>
<td align="left">Asthma resolved</td>
</tr>
<tr>
<td align="left">H312000</td>
<td align="left">Chronic asthmatic bronchitis</td>
</tr>
<tr>
<td align="left">H330000</td>
<td align="left">Extrinsic asthma without status asthmaticus</td>
</tr>
<tr>
<td align="left">H330011</td>
<td align="left">Hay fever with asthma</td>
</tr>
<tr>
<td align="left">H330100</td>
<td align="left">Extrinsic asthma with status asthmaticus</td>
</tr>
<tr>
<td align="left">H330111</td>
<td align="left">Extrinsic asthma with asthma attack</td>
</tr>
<tr>
<td align="left">H330.00</td>
<td align="left">Extrinsic (atopic) asthma</td>
</tr>
<tr>
<td align="left">H330.11</td>
<td align="left">Allergic asthma</td>
</tr>
<tr>
<td align="left">H330.12</td>
<td align="left">Childhood asthma</td>
</tr>
<tr>
<td align="left">H330.13</td>
<td align="left">Hay fever with asthma</td>
</tr>
<tr>
<td align="left">H330.14</td>
<td align="left">Pollen asthma</td>
</tr>
<tr>
<td align="left">H330z00</td>
<td align="left">Extrinsic asthma NOS</td>
</tr>
<tr>
<td align="left">H331000</td>
<td align="left">Intrinsic asthma without status asthmaticus</td>
</tr>
<tr>
<td align="left">H331100</td>
<td align="left">Intrinsic asthma with status asthmaticus</td>
</tr>
<tr>
<td align="left">H331111</td>
<td align="left">Intrinsic asthma with asthma attack</td>
</tr>
<tr>
<td align="left">H331.00</td>
<td align="left">Intrinsic asthma</td>
</tr>
<tr>
<td align="left">H331.11</td>
<td align="left">Late onset asthma</td>
</tr>
<tr>
<td align="left">H331z00</td>
<td align="left">Intrinsic asthma NOS</td>
</tr>
<tr>
<td align="left">H332.00</td>
<td align="left">Mixed asthma</td>
</tr>
<tr>
<td align="left">H333.00</td>
<td align="left">Acute exacerbation of asthma</td>
</tr>
<tr>
<td align="left">H334.00</td>
<td align="left">Brittle asthma</td>
</tr>
<tr>
<td align="left">H335.00</td>
<td align="left">Chronic asthma with fixed airflow obstruction</td>
</tr>
<tr>
<td align="left">H33..00</td>
<td align="left">Asthma</td>
</tr>
<tr>
<td align="left">H33..11</td>
<td align="left">Bronchial asthma</td>
</tr>
<tr>
<td align="left">H33z000</td>
<td align="left">Status asthmaticus NOS</td>
</tr>
<tr>
<td align="left">H33z011</td>
<td align="left">Severe asthma attack</td>
</tr>
<tr>
<td align="left">H33z100</td>
<td align="left">Asthma attack</td>
</tr>
<tr>
<td align="left">H33z111</td>
<td align="left">Asthma attack NOS</td>
</tr>
<tr>
<td align="left">H33z200</td>
<td align="left">Late-onset asthma</td>
</tr>
<tr>
<td align="left">H33z.00</td>
<td align="left">Asthma unspecified</td>
</tr>
<tr>
<td align="left">H33z.11</td>
<td align="left">Hyperreactive airways disease</td>
</tr>
<tr>
<td align="left">H33zz00</td>
<td align="left">Asthma NOS</td>
</tr>
<tr>
<td align="left">H33zz11</td>
<td align="left">Exercise induced asthma</td>
</tr>
<tr>
<td align="left">H33zz12</td>
<td align="left">Allergic asthma NEC</td>
</tr>
<tr>
<td align="left">H33zz13</td>
<td align="left">Allergic bronchitis NEC</td>
</tr>
</tbody>
</table>
<h4>Secondary care diagnoses (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//secondary_care/ICD_asthma.csv'>ICD_asthma.csv</a>)</h4>
<table>
<thead>
<tr>
<th>ICD-10 code</th>
<th>ICD-10 Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left">J45</td>
<td align="left">Asthma</td>
</tr>
<tr>
<td align="left">J46</td>
<td align="left">Status asthmaticus</td>
</tr>
</tbody>
</table>
<h2>Atrial fibrillation</h2>
<h4>Implementation</h4>
~~~
Use MODIFIED CALIBER 'Atrial fibrillation' phenotyping algorithm:
At the specified date, a patient is considered to have had 'Atrial fibrillation' or flutter IF they meet any of the criteria below on or before the specified date.
The earliest date on which the individual meets any of the following criteria on or before the specified date is defined as the first event date:
1. 1. Historical & Diagnosed: first recorded AF code indicates monitoring of an existing condition, or reference to a previous AF diagnosis, or a diagnosis code for AF; preference given to the earliest dated record rather than diagnosis source (i.e. no preference for primary versus secondary care).
1. af_gprd: category 1, 2, 3, 4, 5, 6, 7
2. af_hes: category 6
~~~
<h4>Primary care (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//primary_care/CPRD_AF.csv'>CPRD_AF.csv</a>)</h4>
<table>
<thead>
<tr>
<th>Read code</th>
<th>Read Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left">14AN.00</td>
<td align="left">H/O: atrial fibrillation</td>
</tr>
<tr>
<td align="left">14AR.00</td>
<td align="left">History of atrial flutter</td>
</tr>
<tr>
<td align="left">212R.00</td>
<td align="left">Atrial fibrillation resolved</td>
</tr>
<tr>
<td align="left">662S.00</td>
<td align="left">Atrial fibrillation monitoring</td>
</tr>
<tr>
<td align="left">6A9..00</td>
<td align="left">Atrial fibrillation annual review</td>
</tr>
<tr>
<td align="left">9Os..00</td>
<td align="left">Atrial fibrillation monitoring administration</td>
</tr>
<tr>
<td align="left">9Os0.00</td>
<td align="left">Atrial fibrillation monitoring first letter</td>
</tr>
<tr>
<td align="left">9Os1.00</td>
<td align="left">Atrial fibrillation monitoring second letter</td>
</tr>
<tr>
<td align="left">9Os2.00</td>
<td align="left">Atrial fibrillation monitoring third letter</td>
</tr>
<tr>
<td align="left">9Os3.00</td>
<td align="left">Atrial fibrillation monitoring verbal invite</td>
</tr>
<tr>
<td align="left">9Os4.00</td>
<td align="left">Atrial fibrillation monitoring telephone invite</td>
</tr>
<tr>
<td align="left">9hF..00</td>
<td align="left">Exception reporting: atrial fibrillation quality indicators</td>
</tr>
<tr>
<td align="left">9hF1.00</td>
<td align="left">Excepted from atrial fibrillation qual indic: Inform dissent</td>
</tr>
<tr>
<td align="left">G573200</td>
<td align="left">Paroxysmal atrial fibrillation</td>
</tr>
<tr>
<td align="left">G573400</td>
<td align="left">Permanent atrial fibrillation</td>
</tr>
<tr>
<td align="left">G573500</td>
<td align="left">Persistent atrial fibrillation</td>
</tr>
<tr>
<td align="left">3272.00</td>
<td align="left">ECG: atrial fibrillation</td>
</tr>
<tr>
<td align="left">G573000</td>
<td align="left">Atrial fibrillation</td>
</tr>
<tr>
<td align="left">G573300</td>
<td align="left">Non-rheumatic atrial fibrillation</td>
</tr>
<tr>
<td align="left">G573.00</td>
<td align="left">Atrial fibrillation and flutter</td>
</tr>
<tr>
<td align="left">G573z00</td>
<td align="left">Atrial fibrillation and flutter NOS</td>
</tr>
<tr>
<td align="left">3273.00</td>
<td align="left">ECG: atrial flutter</td>
</tr>
<tr>
<td align="left">G573100</td>
<td align="left">Atrial flutter</td>
</tr>
</tbody>
</table>
<h4>Secondary care diagnoses (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//secondary_care/ICD_AF.csv'>ICD_AF.csv</a>)</h4>
<table>
<thead>
<tr>
<th>ICD-10 code</th>
<th>ICD-10 Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left">I48</td>
<td align="left">Atrial fibrillation and flutter</td>
</tr>
</tbody>
</table>
<h2>Atrioventricular block, complete</h2>
<h4>Implementation</h4>
~~~
At the specified date, a patient is defined as having had Atrioventricular third degree, complete IF they meet the criteria for any of the following on or before the specified date. The earliest date on which the individual meets any of the following criteria on or before the specified date is defined as the first event date:
Primary care
1. Atrioventricular block, complete diagnosis or history of diagnosis during a consultation
OR
Secondary care (ICD10)
1. ALL diagnoses of Atrioventricular block, complete or history of diagnosis during a hospitalization
~~~
<h4>Primary care (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//primary_care/CPRD_av_block_3.csv'>CPRD_av_block_3.csv</a>)</h4>
<table>
<thead>
<tr>
<th>Read code</th>
<th>Read Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="right">3293</td>
<td align="left">ECG:complete sinu-atrial block</td>
</tr>
<tr>
<td align="right">3298</td>
<td align="left">ECG: complete A-V block</td>
</tr>
<tr>
<td align="left">G560.00</td>
<td align="left">Complete atrioventricular block</td>
</tr>
<tr>
<td align="left">G560.11</td>
<td align="left">Third degree atrioventricular block</td>
</tr>
</tbody>
</table>
<h4>Secondary care diagnoses (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//secondary_care/ICD_av_block_3.csv'>ICD_av_block_3.csv</a>)</h4>
<table>
<thead>
<tr>
<th>ICD-10 code</th>
<th>ICD-10 Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left">I44.2</td>
<td align="left">Atrioventricular block, complete</td>
</tr>
</tbody>
</table>
<h2>Atrioventricular block, first degree</h2>
<h4>Implementation</h4>
~~~
At the specified date, a patient is defined as having had 'Atrioventricular block, first degree' IF they meet the criteria for any of the following on or before the specified date. The earliest date on which the individual meets any of the following criteria on or before the specified date is defined as the first event date:
Primary care
1. 'Atrioventricular block, first degree' diagnosis or history of diagnosis during a consultation
OR
Secondary care (ICD10)
1. ALL diagnoses of 'Atrioventricular block, first degree' or history of diagnosis during a hospitalization
~~~
<h4>Primary care (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//primary_care/CPRD_av_block_1.csv'>CPRD_av_block_1.csv</a>)</h4>
<table>
<thead>
<tr>
<th>Read code</th>
<th>Read Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="right">3294</td>
<td align="left">ECG:partial A-V block-long P-R</td>
</tr>
<tr>
<td align="left">32I3.00</td>
<td align="left">ECG: P-R interval prolonged</td>
</tr>
<tr>
<td align="left">G561100</td>
<td align="left">First degree atrioventricular block</td>
</tr>
<tr>
<td align="left">G561111</td>
<td align="left">Prolonged P-R interval</td>
</tr>
</tbody>
</table>
<h4>Secondary care diagnoses (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//secondary_care/ICD_av_block_1.csv'>ICD_av_block_1.csv</a>)</h4>
<table>
<thead>
<tr>
<th>ICD-10 code</th>
<th>ICD-10 Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left">I44.0</td>
<td align="left">Atrioventricular block, first degree</td>
</tr>
</tbody>
</table>
<h2>Atrioventricular block, second degree</h2>
<h4>Implementation</h4>
~~~
At the specified date, a patient is defined as having had 'Atrioventricular block, second degree' IF they meet the criteria for any of the following on or before the specified date. The earliest date on which the individual meets any of the following criteria on or before the specified date is defined as the first event date:
Primary care
1. 'Atrioventricular block, second degree' diagnosis or history of diagnosis during a consultation
OR
Secondary care (ICD10)
1. ALL diagnoses of 'Atrioventricular block, second degree' or history of diagnosis during a hospitalization
~~~
<h4>Primary care (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//primary_care/CPRD_av_block_2.csv'>CPRD_av_block_2.csv</a>)</h4>
<table>
<thead>
<tr>
<th>Read code</th>
<th>Read Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="right">3295</td>
<td align="left">ECG: partial A-V block - 2:1</td>
</tr>
<tr>
<td align="right">3296</td>
<td align="left">ECG: partial A-V block - 3:1</td>
</tr>
<tr>
<td align="right">3297</td>
<td align="left">ECG: Wenckebach phenomenon</td>
</tr>
<tr>
<td align="right">3297.1</td>
<td align="left">Electrocardiogram: Mobitz type 1 second degree AV block</td>
</tr>
<tr>
<td align="left">329H.00</td>
<td align="left">Electrocardiogram: Mobitz type 2 second degree AV block</td>
</tr>
<tr>
<td align="left">G561200</td>
<td align="left">Mobitz type II atrioventricular block</td>
</tr>
<tr>
<td align="left">G561300</td>
<td align="left">Mobitz type I (Wenckebach) atrioventricular block</td>
</tr>
<tr>
<td align="left">G561311</td>
<td align="left">Mobitz type 1 second degree atrioventricular block</td>
</tr>
<tr>
<td align="left">G561400</td>
<td align="left">Second degree atrioventricular block</td>
</tr>
</tbody>
</table>
<h4>Secondary care diagnoses (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//secondary_care/ICD_av_block_2.csv'>ICD_av_block_2.csv</a>)</h4>
<table>
<thead>
<tr>
<th>ICD-10 code</th>
<th>ICD-10 Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left">I44.1</td>
<td align="left">Atrioventricular block, second degree</td>
</tr>
</tbody>
</table>
<h2>Autism and Asperger's syndrome</h2>
<h4>Implementation</h4>
~~~
At the specified date, a patient is defined as having had 'Autism and Asperger's syndrome' and Asperger's syndrome IF they meet the criteria for any of the following on or before the specified date. The earliest date on which the individual meets any of the following criteria on or before the specified date is defined as the first event date:
Primary care
1. 'Autism and Asperger's syndrome' and Asperger's syndrome diagnosis or history of diagnosis during a consultation
OR
Secondary care
1. ALL diagnoses of 'Autism and Asperger's syndrome' and Asperger's syndrome or history of diagnosis during a hospitalization
~~~
<h4>Primary care (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//primary_care/CPRD_autism.csv'>CPRD_autism.csv</a>)</h4>
<table>
<thead>
<tr>
<th>Read code</th>
<th>Read Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left">E140000</td>
<td align="left">Active infantile autism</td>
</tr>
<tr>
<td align="left">E140100</td>
<td align="left">Residual infantile autism</td>
</tr>
<tr>
<td align="left">E140.00</td>
<td align="left">Infantile autism</td>
</tr>
<tr>
<td align="left">E140.11</td>
<td align="left">Kanner's syndrome</td>
</tr>
<tr>
<td align="left">E140.12</td>
<td align="left">Autism</td>
</tr>
<tr>
<td align="left">E140.13</td>
<td align="left">Childhood autism</td>
</tr>
<tr>
<td align="left">E140z00</td>
<td align="left">Infantile autism NOS</td>
</tr>
<tr>
<td align="left">Eu84000</td>
<td align="left">[X]Childhood autism</td>
</tr>
<tr>
<td align="left">Eu84011</td>
<td align="left">[X]Autistic disorder</td>
</tr>
<tr>
<td align="left">Eu84012</td>
<td align="left">[X]Infantile autism</td>
</tr>
<tr>
<td align="left">Eu84014</td>
<td align="left">[X]Kanner's syndrome</td>
</tr>
<tr>
<td align="left">Eu84100</td>
<td align="left">[X]Atypical autism</td>
</tr>
<tr>
<td align="left">Eu84112</td>
<td align="left">[X]Mental retardation with autistic features</td>
</tr>
<tr>
<td align="left">Eu84500</td>
<td align="left">[X]Asperger's syndrome</td>
</tr>
<tr>
<td align="left">Eu84511</td>
<td align="left">[X]Autistic psychopathy</td>
</tr>
<tr>
<td align="left">Eu84z11</td>
<td align="left">[X]Autistic spectrum disorder</td>
</tr>
</tbody>
</table>
<h4>Secondary care diagnoses (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//secondary_care/ICD_autism.csv'>ICD_autism.csv</a>)</h4>
<table>
<thead>
<tr>
<th>ICD-10 code</th>
<th>ICD-10 Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left">F84.0</td>
<td align="left">Childhood autism</td>
</tr>
<tr>
<td align="left">F84.1</td>
<td align="left">Atypical autism</td>
</tr>
<tr>
<td align="left">F84.5</td>
<td align="left">Asperger's syndrome</td>
</tr>
</tbody>
</table>
<h2>Autoimmune liver disease</h2>
<h4>Implementation</h4>
~~~
At the specified date, a patient is defined as having had 'Autoimmune liver disease' IF they meet the criteria for any of the following on or before the specified date. The earliest date on which the individual meets any of the following criteria on or before the specified date is defined as the first event date:
Primary care
1. 'Autoimmune liver disease' diagnosis or history of diagnosis or procedure during a consultation
OR
Secondary care
1. ALL diagnoses of 'Autoimmune liver disease' or history of diagnosis during a hospitalization
~~~
<h4>Primary care (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//primary_care/CPRD_autoimm_liver.csv'>CPRD_autoimm_liver.csv</a>)</h4>
<table>
<thead>
<tr>
<th>Read code</th>
<th>Read Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left">J614111</td>
<td align="left">Autoimmune chronic active hepatitis</td>
</tr>
<tr>
<td align="left">J616000</td>
<td align="left">Primary biliary cirrhosis</td>
</tr>
<tr>
<td align="left">J63B.00</td>
<td align="left">Autoimmune hepatitis</td>
</tr>
<tr>
<td align="left">J661700</td>
<td align="left">Primary sclerosing cholangitis</td>
</tr>
</tbody>
</table>
<h4>Secondary care diagnoses (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//secondary_care/ICD_autoimm_liver.csv'>ICD_autoimm_liver.csv</a>)</h4>
<table>
<thead>
<tr>
<th>ICD-10 code</th>
<th>ICD-10 Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left">K74.3</td>
<td align="left">Primary biliary cirrhosis</td>
</tr>
<tr>
<td align="left">K75.4</td>
<td align="left">Autoimmune hepatitis</td>
</tr>
</tbody>
</table>
<h2>Bacterial Diseases (excl TB)</h2>
<h4>Implementation</h4>
~~~
At the specified date, a patient is defined as having had 'Bacterial Diseases (excl TB)' IF they meet the criteria for any of the following on or before the specified date. The earliest date on which the individual meets any of the following criteria on or before the specified date is defined as the first event date:
Secondary care
1. ALL diagnoses of Bacterial Diseases (excl TB) or history of diagnosis during a hospitalization
~~~
<h4>Secondary care diagnoses (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//secondary_care/ICD_bacterial.csv'>ICD_bacterial.csv</a>)</h4>
<table>
<thead>
<tr>
<th>ICD-10 code</th>
<th>ICD-10 Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left">A00</td>
<td align="left">Cholera</td>
</tr>
<tr>
<td align="left">A01</td>
<td align="left">Typhoid and paratyphoid fevers</td>
</tr>
<tr>
<td align="left">A02</td>
<td align="left">Other salmonella infections</td>
</tr>
<tr>
<td align="left">A03</td>
<td align="left">Shigellosis</td>
</tr>
<tr>
<td align="left">A04</td>
<td align="left">Other bacterial intestinal infections</td>
</tr>
<tr>
<td align="left">A05</td>
<td align="left">Other bacterial foodborne intoxications, not elsewhere classified</td>
</tr>
<tr>
<td align="left">A20</td>
<td align="left">Plague</td>
</tr>
<tr>
<td align="left">A21</td>
<td align="left">Tularaemia</td>
</tr>
<tr>
<td align="left">A22</td>
<td align="left">Anthrax</td>
</tr>
<tr>
<td align="left">A23</td>
<td align="left">Brucellosis</td>
</tr>
<tr>
<td align="left">A24</td>
<td align="left">Glanders and melioidosis</td>
</tr>
<tr>
<td align="left">A25</td>
<td align="left">Rat-bite fevers</td>
</tr>
<tr>
<td align="left">A26</td>
<td align="left">Erysipeloid</td>
</tr>
<tr>
<td align="left">A27</td>
<td align="left">Leptospirosis</td>
</tr>
<tr>
<td align="left">A28</td>
<td align="left">Other zoonotic bacterial diseases, not elsewhere classified</td>
</tr>
<tr>
<td align="left">A30</td>
<td align="left">Leprosy [Hansen's disease]</td>
</tr>
<tr>
<td align="left">A31</td>
<td align="left">Infection due to other mycobacteria</td>
</tr>
<tr>
<td align="left">A32</td>
<td align="left">Listeriosis</td>
</tr>
<tr>
<td align="left">A35</td>
<td align="left">Other tetanus</td>
</tr>
<tr>
<td align="left">A36</td>
<td align="left">Diphtheria</td>
</tr>
<tr>
<td align="left">A37</td>
<td align="left">Whooping cough</td>
</tr>
<tr>
<td align="left">A38</td>
<td align="left">Scarlet fever</td>
</tr>
<tr>
<td align="left">A39</td>
<td align="left">Meningococcal infection</td>
</tr>
<tr>
<td align="left">A40</td>
<td align="left">Streptococcal sepsis</td>
</tr>
<tr>
<td align="left">A41.0</td>
<td align="left">Sepsis due to Staphylococcus aureus</td>
</tr>
<tr>
<td align="left">A41.1</td>
<td align="left">Sepsis due to other specified staphylococcus</td>
</tr>
<tr>
<td align="left">A41.2</td>
<td align="left">Sepsis due to unspecified staphylococcus</td>
</tr>
<tr>
<td align="left">A41.3</td>
<td align="left">Sepsis due to Haemophilus influenzae</td>
</tr>
<tr>
<td align="left">A41.4</td>
<td align="left">Sepsis due to anaerobes</td>
</tr>
<tr>
<td align="left">A41.5</td>
<td align="left">Sepsis due to other Gram-negative organisms</td>
</tr>
<tr>
<td align="left">A42</td>
<td align="left">Actinomycosis</td>
</tr>
<tr>
<td align="left">A43</td>
<td align="left">Nocardiosis</td>
</tr>
<tr>
<td align="left">A44</td>
<td align="left">Bartonellosis</td>
</tr>
<tr>
<td align="left">A46</td>
<td align="left">Erysipelas</td>
</tr>
<tr>
<td align="left">A48</td>
<td align="left">Other bacterial diseases, not elsewhere classified</td>
</tr>
<tr>
<td align="left">A49</td>
<td align="left">Bacterial infection of unspecified site</td>
</tr>
<tr>
<td align="left">A50</td>
<td align="left">Congenital syphilis</td>
</tr>
<tr>
<td align="left">A51</td>
<td align="left">Early syphilis</td>
</tr>
<tr>
<td align="left">A52</td>
<td align="left">Late syphilis</td>
</tr>
<tr>
<td align="left">A53</td>
<td align="left">Other and unspecified syphilis</td>
</tr>
<tr>
<td align="left">A54</td>
<td align="left">Gonococcal infection</td>
</tr>
<tr>
<td align="left">A55</td>
<td align="left">Chlamydial lymphogranuloma (venereum)</td>
</tr>
<tr>
<td align="left">A56</td>
<td align="left">Other sexually transmitted chlamydial diseases</td>
</tr>
<tr>
<td align="left">A57</td>
<td align="left">Chancroid</td>
</tr>
<tr>
<td align="left">A58</td>
<td align="left">Granuloma inguinale</td>
</tr>
<tr>
<td align="left">A65</td>
<td align="left">Nonvenereal syphilis</td>
</tr>
<tr>
<td align="left">A66</td>
<td align="left">Yaws</td>
</tr>
<tr>
<td align="left">A67</td>
<td align="left">Pinta [carate]</td>
</tr>
<tr>
<td align="left">A68</td>
<td align="left">Relapsing fevers</td>
</tr>
<tr>
<td align="left">A69</td>
<td align="left">Other spirochaetal infections</td>
</tr>
<tr>
<td align="left">A70</td>
<td align="left">Chlamydia psittaci infection</td>
</tr>
<tr>
<td align="left">A71</td>
<td align="left">Trachoma</td>
</tr>
<tr>
<td align="left">A74</td>
<td align="left">Other diseases caused by chlamydiae</td>
</tr>
<tr>
<td align="left">A75</td>
<td align="left">Typhus fever</td>
</tr>
<tr>
<td align="left">A77</td>
<td align="left">Spotted fever [tick-borne rickettsioses]</td>
</tr>
<tr>
<td align="left">A78</td>
<td align="left">Q fever</td>
</tr>
<tr>
<td align="left">A79</td>
<td align="left">Other rickettsioses</td>
</tr>
<tr>
<td align="left">B20.1</td>
<td align="left">HIV disease resulting in other bacterial infections</td>
</tr>
<tr>
<td align="left">B92</td>
<td align="left">Sequelae of leprosy</td>
</tr>
<tr>
<td align="left">B94.0</td>
<td align="left">Sequelae of trachoma</td>
</tr>
<tr>
<td align="left">B95</td>
<td align="left">Streptococcus and staphylococcus as the cause of diseases classified to other chapters</td>
</tr>
<tr>
<td align="left">B96</td>
<td align="left">Other specified bacterial agents as the cause of diseases classified to other chapters</td>
</tr>
<tr>
<td align="left">B98.0</td>
<td align="left">Helicobacter pylori [H.pylori] as the cause of diseases classified to other chapters</td>
</tr>
<tr>
<td align="left">B98.1</td>
<td align="left">Vibrio vulnificus as the cause of diseases classified to other chapters</td>
</tr>
<tr>
<td align="left">G00</td>
<td align="left">Bacterial meningitis, not elsewhere classified</td>
</tr>
<tr>
<td align="left">G01</td>
<td align="left">Meningitis in bacterial diseases classified elsewhere</td>
</tr>
<tr>
<td align="left">G04.2</td>
<td align="left">Bacterial meningoencephalitis and meningomyelitis, not elsewhere classified</td>
</tr>
<tr>
<td align="left">G05.0</td>
<td align="left">Encephalitis, myelitis and encephalomyelitis in bacterial diseases classified elsewhere</td>
</tr>
<tr>
<td align="left">H62.0</td>
<td align="left">Otitis externa in bacterial diseases classified elsewhere</td>
</tr>
<tr>
<td align="left">H67.0</td>
<td align="left">Otitis media in bacterial diseases classified elsewhere</td>
</tr>
<tr>
<td align="left">I00</td>
<td align="left">Rheumatic fever without mention of heart involvement</td>
</tr>
<tr>
<td align="left">I01</td>
<td align="left">Rheumatic fever with heart involvement</td>
</tr>
<tr>
<td align="left">I02</td>
<td align="left">Rheumatic chorea</td>
</tr>
<tr>
<td align="left">I05</td>
<td align="left">Rheumatic mitral valve diseases</td>
</tr>
<tr>
<td align="left">I06</td>
<td align="left">Rheumatic aortic valve diseases</td>
</tr>
<tr>
<td align="left">I07</td>
<td align="left">Rheumatic tricuspid valve diseases</td>
</tr>
<tr>
<td align="left">I09</td>
<td align="left">Other rheumatic heart diseases</td>
</tr>
<tr>
<td align="left">I32.0</td>
<td align="left">Pericarditis in bacterial diseases classified elsewhere</td>
</tr>
<tr>
<td align="left">I41.0</td>
<td align="left">Myocarditis in bacterial diseases classified elsewhere</td>
</tr>
<tr>
<td align="left">I98.0</td>
<td align="left">Cardiovascular syphilis</td>
</tr>
<tr>
<td align="left">J02.0</td>
<td align="left">Streptococcal pharyngitis</td>
</tr>
<tr>
<td align="left">J03.0</td>
<td align="left">Streptococcal tonsillitis</td>
</tr>
<tr>
<td align="left">J13</td>
<td align="left">Pneumonia due to Streptococcus pneumoniae</td>
</tr>
<tr>
<td align="left">J14</td>
<td align="left">Pneumonia due to Haemophilus influenzae</td>
</tr>
<tr>
<td align="left">J15</td>
<td align="left">Bacterial pneumonia, not elsewhere classified</td>
</tr>
<tr>
<td align="left">J16.0</td>
<td align="left">Chlamydial pneumonia</td>
</tr>
<tr>
<td align="left">J17.0</td>
<td align="left">Pneumonia in bacterial diseases classified elsewhere</td>
</tr>
<tr>
<td align="left">J20.0</td>
<td align="left">Acute bronchitis due to Mycoplasma pneumoniae</td>
</tr>
<tr>
<td align="left">J20.1</td>
<td align="left">Acute bronchitis due to Haemophilus influenzae</td>
</tr>
<tr>
<td align="left">J20.2</td>
<td align="left">Acute bronchitis due to streptococcus</td>
</tr>
<tr>
<td align="left">J34.0</td>
<td align="left">Abscess, furuncle and carbuncle of nose</td>
</tr>
<tr>
<td align="left">J36</td>
<td align="left">Peritonsillar abscess</td>
</tr>
<tr>
<td align="left">J39.0</td>
<td align="left">Retropharyngeal and parapharyngeal abscess</td>
</tr>
<tr>
<td align="left">J39.1</td>
<td align="left">Other abscess of pharynx</td>
</tr>
<tr>
<td align="left">J86</td>
<td align="left">Pyothorax</td>
</tr>
<tr>
<td align="left">K61</td>
<td align="left">Abscess of anal and rectal regions</td>
</tr>
<tr>
<td align="left">K63.0</td>
<td align="left">Abscess of intestine</td>
</tr>
<tr>
<td align="left">K67.0</td>
<td align="left">Chlamydial peritonitis</td>
</tr>
<tr>
<td align="left">K67.1</td>
<td align="left">Gonococcal peritonitis</td>
</tr>
<tr>
<td align="left">L00</td>
<td align="left">Staphylococcal scalded skin syndrome</td>
</tr>
<tr>
<td align="left">L01</td>
<td align="left">Impetigo</td>
</tr>
<tr>
<td align="left">L02</td>
<td align="left">Cutaneous abscess, furuncle and carbuncle</td>
</tr>
<tr>
<td align="left">L03</td>
<td align="left">Cellulitis</td>
</tr>
<tr>
<td align="left">L05.0</td>
<td align="left">Pilonidal cyst with abscess</td>
</tr>
<tr>
<td align="left">L08.1</td>
<td align="left">Erythrasma</td>
</tr>
<tr>
<td align="left">M00.0</td>
<td align="left">Staphylococcal arthritis and polyarthritis</td>
</tr>
<tr>
<td align="left">M00.1</td>
<td align="left">Pneumococcal arthritis and polyarthritis</td>
</tr>
<tr>
<td align="left">M00.2</td>
<td align="left">Other streptococcal arthritis and polyarthritis</td>
</tr>
<tr>
<td align="left">M00.8</td>
<td align="left">Arthritis and polyarthritis due to other specified bacterial agents</td>
</tr>
<tr>
<td align="left">M00.9</td>
<td align="left">Pyogenic arthritis, unspecified</td>
</tr>
<tr>
<td align="left">M01.0</td>
<td align="left">Meningococcal arthritis</td>
</tr>
<tr>
<td align="left">M01.2</td>
<td align="left">Arthritis in Lyme disease</td>
</tr>
<tr>
<td align="left">M01.3</td>
<td align="left">Arthritis in other bacterial diseases classified elsewhere</td>
</tr>
<tr>
<td align="left">M03.0</td>
<td align="left">Postmeningococcal arthritis</td>
</tr>
<tr>
<td align="left">M03.1</td>
<td align="left">Postinfective arthropathy in syphilis</td>
</tr>
<tr>
<td align="left">M49.1</td>
<td align="left">Brucella spondylitis</td>
</tr>
<tr>
<td align="left">M49.2</td>
<td align="left">Enterobacterial spondylitis</td>
</tr>
<tr>
<td align="left">M63.0</td>
<td align="left">Myositis in bacterial diseases classified elsewhere</td>
</tr>
<tr>
<td align="left">M65.0</td>
<td align="left">Abscess of tendon sheath</td>
</tr>
<tr>
<td align="left">M65.1</td>
<td align="left">Other infective (teno)synovitis</td>
</tr>
<tr>
<td align="left">M68.0</td>
<td align="left">Synovitis and tenosynovitis in bacterial diseases classified elsewhere</td>
</tr>
<tr>
<td align="left">M71.0</td>
<td align="left">Abscess of bursa</td>
</tr>
<tr>
<td align="left">M71.1</td>
<td align="left">Other infective bursitis</td>
</tr>
<tr>
<td align="left">M72.6</td>
<td align="left">Necrotizing fasciitis</td>
</tr>
<tr>
<td align="left">M73.1</td>
<td align="left">Syphilitic bursitis</td>
</tr>
<tr>
<td align="left">M86</td>
<td align="left">Osteomyelitis</td>
</tr>
<tr>
<td align="left">M90.1</td>
<td align="left">Periostitis in other infectious diseases classified elsewhere</td>
</tr>
<tr>
<td align="left">M90.2</td>
<td align="left">Osteopathy in other infectious diseases classified elsewhere</td>
</tr>
<tr>
<td align="left">N13.6</td>
<td align="left">Pyonephrosis</td>
</tr>
<tr>
<td align="left">N15.1</td>
<td align="left">Renal and perinephric abscess</td>
</tr>
<tr>
<td align="left">N29.0</td>
<td align="left">Late syphilis of kidney</td>
</tr>
<tr>
<td align="left">N39.0</td>
<td align="left">Urinary tract infection, site not specified</td>
</tr>
<tr>
<td align="left">N41.0</td>
<td align="left">Acute prostatitis</td>
</tr>
<tr>
<td align="left">N41.2</td>
<td align="left">Abscess of prostate</td>
</tr>
<tr>
<td align="left">N41.3</td>
<td align="left">Prostatocystitis</td>
</tr>
<tr>
<td align="left">N43.1</td>
<td align="left">Infected hydrocele</td>
</tr>
<tr>
<td align="left">N45</td>
<td align="left">Orchitis and epididymitis</td>
</tr>
<tr>
<td align="left">N70</td>
<td align="left">Salpingitis and oophoritis</td>
</tr>
<tr>
<td align="left">N71</td>
<td align="left">Inflammatory disease of uterus, except cervix</td>
</tr>
<tr>
<td align="left">N72</td>
<td align="left">Inflammatory disease of cervix uteri</td>
</tr>
<tr>
<td align="left">N73</td>
<td align="left">Other female pelvic inflammatory diseases</td>
</tr>
<tr>
<td align="left">N74.3</td>
<td align="left">Female gonococcal pelvic inflammatory disease</td>
</tr>
<tr>
<td align="left">N74.4</td>
<td align="left">Female chlamydial pelvic inflammatory disease</td>
</tr>
<tr>
<td align="left">N74.8</td>
<td align="left">Female pelvic inflammatory disorders in other diseases classified elsewhere</td>
</tr>
<tr>
<td align="left">N75.1</td>
<td align="left">Abscess of Bartholin's gland</td>
</tr>
<tr>
<td align="left">P23.1</td>
<td align="left">Congenital pneumonia due to Chlamydia</td>
</tr>
<tr>
<td align="left">P23.2</td>
<td align="left">Congenital pneumonia due to staphylococcus</td>
</tr>
<tr>
<td align="left">P23.3</td>
<td align="left">Congenital pneumonia due to streptococcus, group B</td>
</tr>
<tr>
<td align="left">P23.4</td>
<td align="left">Congenital pneumonia due to Escherichia coli</td>
</tr>
<tr>
<td align="left">P23.5</td>
<td align="left">Congenital pneumonia due to Pseudomonas</td>
</tr>
<tr>
<td align="left">P23.6</td>
<td align="left">Congenital pneumonia due to other bacterial agents</td>
</tr>
<tr>
<td align="left">P36</td>
<td align="left">Bacterial sepsis of newborn</td>
</tr>
<tr>
<td align="left">P37.2</td>
<td align="left">Neonatal (disseminated) listeriosis</td>
</tr>
</tbody>
</table>
<h2>Bacterial sepsis of newborn</h2>
<h4>Implementation</h4>
~~~
At the specified date, a patient is defined as having had Bacterial sepsis of newborn IF they meet the criteria for any of the following on or before the specified date. The earliest date on which the individual meets any of the following criteria on or before the specified date is defined as the first event date:
Primary care
1. Bacterial sepsis of newborn diagnosis or history of diagnosis during a consultation AND IF the patient is aged < 1y at the first event date
OR
Secondary care
1. ALL diagnoses of Bacterial sepsis of newborn or history of diagnosis during a hospitalization AND IF the patient is aged < 1y at the first event date
~~~
<h4>Primary care (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//primary_care/CPRD_sepsis_newborn.csv'>CPRD_sepsis_newborn.csv</a>)</h4>
<table>
<thead>
<tr>
<th>Read code</th>
<th>Read Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left">Q408200</td>
<td align="left">Eschericha coli intra-amniotic fetal infection</td>
</tr>
<tr>
<td align="left">Q408400</td>
<td align="left">Group A haemolytic streptococcal intra-amniotic infect. NEC</td>
</tr>
<tr>
<td align="left">Q408500</td>
<td align="left">Group B haemolytic streptococcal intra-amniotic infect. NEC</td>
</tr>
<tr>
<td align="left">Q408600</td>
<td align="left">Pseudomonas pyocyaneus congenital infection</td>
</tr>
<tr>
<td align="left">Q40A000</td>
<td align="left">Sepsis of newborn due to Staphylococcus aureus</td>
</tr>
<tr>
<td align="left">Q40A100</td>
<td align="left">Sepsis of newborn due to Escherichia coli</td>
</tr>
<tr>
<td align="left">Q40A200</td>
<td align="left">Sepsis of newborn due to anaerobes</td>
</tr>
<tr>
<td align="left">Q40A300</td>
<td align="left">Perinatal coagulase negative staphylococcus</td>
</tr>
<tr>
<td align="left">Q40A.00</td>
<td align="left">Sepsis of the newborn</td>
</tr>
<tr>
<td align="left">Q40W.00</td>
<td align="left">Sepsis of newborn due to other+unspecified streptococci</td>
</tr>
<tr>
<td align="left">Q40y000</td>
<td align="left">Intrauterine fetal sepsis, unspecified</td>
</tr>
<tr>
<td align="left">Q40y011</td>
<td align="left">Congenital sepsis NOS</td>
</tr>
<tr>
<td align="left">Q40y012</td>
<td align="left">Congenital septicaemia</td>
</tr>
<tr>
<td align="left">Q40y100</td>
<td align="left">Neonatal urinary tract infection</td>
</tr>
<tr>
<td align="left">Q40y200</td>
<td align="left">Septicaemia of newborn</td>
</tr>
<tr>
<td align="left">Q40y.00</td>
<td align="left">Other specified perinatal infection</td>
</tr>
<tr>
<td align="left">Q40yz00</td>
<td align="left">Other specified perinatal infection NOS</td>
</tr>
<tr>
<td align="left">Q40z.00</td>
<td align="left">Perinatal infections NOS</td>
</tr>
<tr>
<td align="left">Qyu4100</td>
<td align="left">[X]Sepsis/newborn due to other+unspecified staphylococcus</td>
</tr>
<tr>
<td align="left">Qyu4200</td>
<td align="left">[X]Other bacterial sepsis of newborn</td>
</tr>
<tr>
<td align="left">Qyu4800</td>
<td align="left">[X]Sepsis of newborn due to other+unspecified streptococci</td>
</tr>
</tbody>
</table>
<h4>Secondary care diagnoses (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//secondary_care/ICD_sepsis_newborn.csv'>ICD_sepsis_newborn.csv</a>)</h4>
<table>
<thead>
<tr>
<th>ICD-10 code</th>
<th>ICD-10 Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left">P36</td>
<td align="left">Bacterial sepsis of newborn</td>
</tr>
</tbody>
</table>
<h2>Barrett's oesophagus</h2>
<h4>Implementation</h4>
~~~
At the specified date, a patient is defined as having had 'Barrett's oesophagus' IF they meet the criteria for any of the following on or before the specified date. The earliest date on which the individual meets any of the following criteria on or before the specified date is defined as the first event date:
Primary care
1. 'Barrett's oesophagus' diagnosis or history of diagnosis during a consultation
OR
Secondary care
1. ALL diagnoses of 'Barrett's oesophagus' or history of diagnosis during a hospitalization
~~~
<h4>Primary care (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//primary_care/CPRD_barretts.csv'>CPRD_barretts.csv</a>)</h4>
<table>
<thead>
<tr>
<th>Read code</th>
<th>Read Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left">J101611</td>
<td align="left">Barrett's oesophagus</td>
</tr>
<tr>
<td align="left">J102500</td>
<td align="left">Barrett's ulcer of oesophagus</td>
</tr>
<tr>
<td align="left">J10y600</td>
<td align="left">Barrett's oesophagus</td>
</tr>
</tbody>
</table>
<h4>Secondary care diagnoses (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//secondary_care/ICD_barretts.csv'>ICD_barretts.csv</a>)</h4>
<table>
<thead>
<tr>
<th>ICD-10 code</th>
<th>ICD-10 Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left">K22.7</td>
<td align="left">Barrett's oesophagus</td>
</tr>
</tbody>
</table>
<h2>Bell's palsy</h2>
<h4>Implementation</h4>
~~~
At the specified date, a patient is defined as having had 'Bell's palsy' IF they meet the criteria for any of the following on or before the specified date. The earliest date on which the individual meets any of the following criteria on or before the specified date is defined as the first event date:
Primary care
1. 'Bell's palsy' diagnosis or history of diagnosis during a consultation
OR
Secondary care
1. ALL diagnoses of 'Bell's palsy' or history of diagnosis during a hospitalization
~~~
<h4>Primary care (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//primary_care/CPRD_bells.csv'>CPRD_bells.csv</a>)</h4>
<table>
<thead>
<tr>
<th>Read code</th>
<th>Read Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="right">1476</td>
<td align="left">H/O: Bell's palsy</td>
</tr>
<tr>
<td align="left">F310.00</td>
<td align="left">Bell's (facial) palsy</td>
</tr>
</tbody>
</table>
<h4>Secondary care diagnoses (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//secondary_care/ICD_bells.csv'>ICD_bells.csv</a>)</h4>
<table>
<thead>
<tr>
<th>ICD-10 code</th>
<th>ICD-10 Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left">G51.0</td>
<td align="left">Bell's palsy</td>
</tr>
</tbody>
</table>
<h2>Benign neoplasm and polyp of uterus</h2>
<h4>Implementation</h4>
~~~
At the specified date, a patient is defined as having had Benign neoplasm and polyp of uterus IF they meet the criteria for any of the following on or before the specified date. The earliest date on which the individual meets any of the following criteria on or before the specified date is defined as the first event date:
Primary care
1. Benign neoplasm and polyp of uterus diagnosis or history of diagnosis during a consultation
OR
Secondary care
1. ALL diagnoses of Benign neoplasm and polyp of uterus or history of diagnosis during a hospitalization
~~~
<h4>Primary care (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//primary_care/CPRD_benign_uterus.csv'>CPRD_benign_uterus.csv</a>)</h4>
<table>
<thead>
<tr>
<th>Read code</th>
<th>Read Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left">7E0D311</td>
<td align="left">Endoscopic endometrial polypectomy</td>
</tr>
<tr>
<td align="left">7E0D700</td>
<td align="left">Endoscopic endometrial polypectomy</td>
</tr>
<tr>
<td align="left">B791000</td>
<td align="left">Benign neoplasm of endometrium NEC</td>
</tr>
<tr>
<td align="left">B791100</td>
<td align="left">Benign neoplasm of myometrium NEC</td>
</tr>
<tr>
<td align="left">B791200</td>
<td align="left">Benign neoplasm of uterine fundus NEC</td>
</tr>
<tr>
<td align="left">B791.00</td>
<td align="left">Benign neoplasm corpus uteri NEC</td>
</tr>
<tr>
<td align="left">B791z00</td>
<td align="left">Benign neoplasm of corpus uteri NOS</td>
</tr>
<tr>
<td align="left">B79..00</td>
<td align="left">Other benign neoplasm of uterus</td>
</tr>
<tr>
<td align="left">B79y.00</td>
<td align="left">Benign neoplasm of other specified sites of uterus</td>
</tr>
<tr>
<td align="left">B79z.00</td>
<td align="left">Benign neoplasm of uterus NOS</td>
</tr>
<tr>
<td align="left">ByuGB00</td>
<td align="left">[X]Benign neoplasm of other parts of uterus</td>
</tr>
<tr>
<td align="left">K540.00</td>
<td align="left">Polyp of the corpus uteri</td>
</tr>
<tr>
<td align="left">K540.11</td>
<td align="left">Endometrial polyp</td>
</tr>
</tbody>
</table>
<h4>Secondary care diagnoses (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//secondary_care/ICD_benign_uterus.csv'>ICD_benign_uterus.csv</a>)</h4>
<table>
<thead>
<tr>
<th>ICD-10 code</th>
<th>ICD-10 Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left">D26.1</td>
<td align="left">Other benign neoplasm: Corpus uteri</td>
</tr>
<tr>
<td align="left">D26.7</td>
<td align="left">Other benign neoplasm: Other parts of uterus</td>
</tr>
<tr>
<td align="left">D26.9</td>
<td align="left">Other benign neoplasm: Uterus, unspecified</td>
</tr>
<tr>
<td align="left">N84.0</td>
<td align="left">Polyp of corpus uteri</td>
</tr>
</tbody>
</table>
<h2>Benign neoplasm of brain and other parts of central nervous system</h2>
<h4>Implementation</h4>
~~~
At the specified date, a patient is defined as having had Benign neoplasm of brain and other parts of central nervous system IF they meet the criteria for any of the following on or before the specified date. The earliest date on which the individual meets any of the following criteria on or before the specified date is defined as the first event date:
Primary care
1. Benign neoplasm of brain and other parts of central nervous system diagnosis or history of diagnosis during a consultation
OR
Secondary care
1. ALL diagnoses of Benign neoplasm of brain and other parts of central nervous system or history of diagnosis during a hospitalization
~~~
<h4>Primary care (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//primary_care/CPRD_benign_brain.csv'>CPRD_benign_brain.csv</a>)</h4>
<table>
<thead>
<tr>
<th>Read code</th>
<th>Read Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left">B7F0000</td>
<td align="left">Benign neoplasm of brain, supratentorial</td>
</tr>
<tr>
<td align="left">B7F0.00</td>
<td align="left">Benign neoplasm of brain</td>
</tr>
<tr>
<td align="left">B7F0.11</td>
<td align="left">Cerebral tumour - benign</td>
</tr>
<tr>
<td align="left">B7F1000</td>
<td align="left">Acoustic neuroma</td>
</tr>
<tr>
<td align="left">B7F1.00</td>
<td align="left">Benign neoplasm of cranial nerves</td>
</tr>
<tr>
<td align="left">B7F2000</td>
<td align="left">Cerebral meningioma</td>
</tr>
<tr>
<td align="left">B7F2.00</td>
<td align="left">Benign neoplasm of cerebral meninges</td>
</tr>
<tr>
<td align="left">B7F2z00</td>
<td align="left">Benign neoplasm of cerebral meninges NOS</td>
</tr>
<tr>
<td align="left">B7F3.00</td>
<td align="left">Benign neoplasm of spinal cord</td>
</tr>
<tr>
<td align="left">B7F4000</td>
<td align="left">Spinal meningioma</td>
</tr>
<tr>
<td align="left">B7F4.00</td>
<td align="left">Benign neoplasm of spinal meninges</td>
</tr>
<tr>
<td align="left">B7F4z00</td>
<td align="left">Benign neoplasm of spinal meninges NOS</td>
</tr>
<tr>
<td align="left">B7F..00</td>
<td align="left">Benign neoplasm of brain and other parts of nervous system</td>
</tr>
<tr>
<td align="left">B7FX.00</td>
<td align="left">Benign neoplasm of meninges, unspecified</td>
</tr>
<tr>
<td align="left">B7Fz.00</td>
<td align="left">Benign neoplasm of brain or other nervous system NOS</td>
</tr>
<tr>
<td align="left">B7H2000</td>
<td align="left">Benign neoplasm of pituitary gland</td>
</tr>
<tr>
<td align="left">B7H2100</td>
<td align="left">Benign neoplasm of Rathke's pouch</td>
</tr>
<tr>
<td align="left">B7H2200</td>
<td align="left">Benign neoplasm of sella turcica</td>
</tr>
<tr>
<td align="left">B7H2300</td>
<td align="left">Benign neoplasm of craniopharyngeal duct</td>
</tr>
<tr>
<td align="left">B7H2.00</td>
<td align="left">Benign neoplasm of pituitary gland and craniopharyngeal duct</td>
</tr>
<tr>
<td align="left">B7H2.11</td>
<td align="left">Pituitary adenoma</td>
</tr>
<tr>
<td align="left">B7H2z00</td>
<td align="left">Benign neoplasm of pituitary and craniopharyngeal duct NOS</td>
</tr>
<tr>
<td align="left">B7H3.00</td>
<td align="left">Benign neoplasm of pineal gland</td>
</tr>
<tr>
<td align="left">B7H4.00</td>
<td align="left">Benign neoplasm of carotid body</td>
</tr>
<tr>
<td align="left">B7H5000</td>
<td align="left">Benign neoplasm of glomus jugulare</td>
</tr>
<tr>
<td align="left">B7H5100</td>
<td align="left">Benign neoplasm of aortic body</td>
</tr>
<tr>
<td align="left">B7H5200</td>
<td align="left">Benign neoplasm of coccygeal body</td>
</tr>
<tr>
<td align="left">B7H5.00</td>
<td align="left">Benign neoplasm of aortic body and other paraganglia</td>
</tr>
<tr>
<td align="left">B7H5z00</td>
<td align="left">Benign neoplasm of aortic body and other paraganglia NOS</td>
</tr>
<tr>
<td align="left">BBb5.00</td>
<td align="left">[M]Choroid plexus papilloma NOS</td>
</tr>
<tr>
<td align="left">BBd0.00</td>
<td align="left">[M]Meningioma NOS</td>
</tr>
<tr>
<td align="left">BBd3.00</td>
<td align="left">[M]Meningotheliomatous meningioma</td>
</tr>
<tr>
<td align="left">BBd3.11</td>
<td align="left">[M]Endotheliomatous meningioma</td>
</tr>
<tr>
<td align="left">BBd4.00</td>
<td align="left">[M]Fibrous meningioma</td>
</tr>
<tr>
<td align="left">BBd5.00</td>
<td align="left">[M]Psammomatous meningioma</td>
</tr>
<tr>
<td align="left">BBd6.00</td>
<td align="left">[M]Angiomatous meningioma</td>
</tr>
<tr>
<td align="left">BBd7.00</td>
<td align="left">[M]Haemangioblastic meningioma</td>
</tr>
<tr>
<td align="left">BBd7.11</td>
<td align="left">[M]Angioblastic meningioma</td>
</tr>
<tr>
<td align="left">BBd8.00</td>
<td align="left">[M]Haemangiopericytic meningioma</td>
</tr>
<tr>
<td align="left">BBd9.00</td>
<td align="left">[M]Transitional meningioma</td>
</tr>
<tr>
<td align="left">BBd..00</td>
<td align="left">[M]Meningiomas</td>
</tr>
<tr>
<td align="left">BBdz.00</td>
<td align="left">[M]Meningioma NOS</td>
</tr>
<tr>
<td align="left">BBe5.11</td>
<td align="left">[M]Acoustic neuroma</td>
</tr>
</tbody>
</table>
<h4>Secondary care diagnoses (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//secondary_care/ICD_benign_brain.csv'>ICD_benign_brain.csv</a>)</h4>
<table>
<thead>
<tr>
<th>ICD-10 code</th>
<th>ICD-10 Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left">D32</td>
<td align="left">Benign neoplasm of meninges</td>
</tr>
<tr>
<td align="left">D33</td>
<td align="left">Benign neoplasm of brain and other parts of central nervous system</td>
</tr>
<tr>
<td align="left">D35.2</td>
<td align="left">Benign neoplasm: Pituitary gland</td>
</tr>
<tr>
<td align="left">D35.3</td>
<td align="left">Benign neoplasm: Craniopharyngeal duct</td>
</tr>
<tr>
<td align="left">D35.4</td>
<td align="left">Benign neoplasm: Pineal gland</td>
</tr>
<tr>
<td align="left">D35.5</td>
<td align="left">Benign neoplasm: Carotid body</td>
</tr>
<tr>
<td align="left">D35.6</td>
<td align="left">Benign neoplasm: Aortic body and other paraganglia</td>
</tr>
</tbody>
</table>
<h2>Benign neoplasm of colon, rectum, anus and anal canal</h2>
<h4>Implementation</h4>
~~~
At the specified date, a patient is defined as having had Benign neoplasm of colon, rectum, anus and anal canal IF they meet the criteria for any of the following on or before the specified date. The earliest date on which the individual meets any of the following criteria on or before the specified date is defined as the first event date:
Primary care
1. Benign neoplasm of colon, rectum, anus and anal canal diagnosis or history of diagnosis during a consultation
OR
Secondary care
1. ALL diagnoses of Benign neoplasm of colon, rectum, anus and anal canal or history of diagnosis during a hospitalization
~~~
<h4>Primary care (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//primary_care/CPRD_benign_colon.csv'>CPRD_benign_colon.csv</a>)</h4>
<table>
<thead>
<tr>
<th>Read code</th>
<th>Read Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left">771G400</td>
<td align="left">Colonoscopic polypectomy</td>
</tr>
<tr>
<td align="left">7722.11</td>
<td align="left">Open operation on rectal polyp</td>
</tr>
<tr>
<td align="left">7722.12</td>
<td align="left">Open polypectomy of rectum</td>
</tr>
<tr>
<td align="left">7726111.0</td>
<td align="left">Peranal excision of rectal polyp</td>
</tr>
<tr>
<td align="left">7726112.0</td>
<td align="left">Peranal polypectomy of rectum</td>
</tr>
<tr>
<td align="left">7726212.0</td>
<td align="left">Peranal destruction of rectal polyp</td>
</tr>
<tr>
<td align="left">7731200.0</td>
<td align="left">Excision of anal polyp</td>
</tr>
<tr>
<td align="left">B713000</td>
<td align="left">Benign neoplasm of hepatic flexure of colon</td>
</tr>
<tr>
<td align="left">B713100</td>
<td align="left">Benign neoplasm of transverse colon</td>
</tr>
<tr>
<td align="left">B713200</td>
<td align="left">Benign neoplasm of descending colon</td>
</tr>
<tr>
<td align="left">B713300</td>
<td align="left">Benign neoplasm of sigmoid colon</td>
</tr>
<tr>
<td align="left">B713400</td>
<td align="left">Benign neoplasm of caecum</td>
</tr>
<tr>
<td align="left">B713500</td>
<td align="left">Benign neoplasm of appendix</td>
</tr>
<tr>
<td align="left">B713600</td>
<td align="left">Benign neoplasm of ascending colon</td>
</tr>
<tr>
<td align="left">B713700</td>
<td align="left">Benign neoplasm of splenic flexure of colon</td>
</tr>
<tr>
<td align="left">B713900</td>
<td align="left">Benign neoplasm of ileocaecal valve</td>
</tr>
<tr>
<td align="left">B713.00</td>
<td align="left">Benign neoplasm of colon</td>
</tr>
<tr>
<td align="left">B713.11</td>
<td align="left">Colon polyp</td>
</tr>
<tr>
<td align="left">B713z00</td>
<td align="left">Benign neoplasm of colon NOS</td>
</tr>
<tr>
<td align="left">B714000</td>
<td align="left">Benign neoplasm of rectosigmoid junction</td>
</tr>
<tr>
<td align="left">B714100</td>
<td align="left">Benign neoplasm of rectum</td>
</tr>
<tr>
<td align="left">B714111</td>
<td align="left">Benign papilloma rectum</td>
</tr>
<tr>
<td align="left">B714200</td>
<td align="left">Benign neoplasm of anal canal</td>
</tr>
<tr>
<td align="left">B714300</td>
<td align="left">Benign neoplasm of anus NOS</td>
</tr>
<tr>
<td align="left">B714.00</td>
<td align="left">Benign neoplasm of rectum and anal canal</td>
</tr>
<tr>
<td align="left">B714z00</td>
<td align="left">Benign neoplasm of rectum or anal canal NOS</td>
</tr>
<tr>
<td align="left">J570000</td>
<td align="left">Anal polyp</td>
</tr>
<tr>
<td align="left">J570100</td>
<td align="left">Rectal polyp</td>
</tr>
<tr>
<td align="left">J570.00</td>
<td align="left">Anal and rectal polyp</td>
</tr>
<tr>
<td align="left">J570z00</td>
<td align="left">Anal and rectal polyp NOS</td>
</tr>
<tr>
<td align="left">J578.00</td>
<td align="left">Colonic polyp</td>
</tr>
<tr>
<td align="left">J578.11</td>
<td align="left">Polyp of colon</td>
</tr>
</tbody>
</table>
<h4>Secondary care diagnoses (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//secondary_care/ICD_benign_colon.csv'>ICD_benign_colon.csv</a>)</h4>
<table>
<thead>
<tr>
<th>ICD-10 code</th>
<th>ICD-10 Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left">D12</td>
<td align="left">Benign neoplasm of colon, rectum, anus and anal canal</td>
</tr>
<tr>
<td align="left">K62.0</td>
<td align="left">Anal polyp</td>
</tr>
<tr>
<td align="left">K62.1</td>
<td align="left">Rectal polyp</td>
</tr>
<tr>
<td align="left">K63.5</td>
<td align="left">Polyp of colon</td>
</tr>
</tbody>
</table>
<h2>Benign neoplasm of ovary</h2>
<h4>Implementation</h4>
~~~
At the specified date, a patient is defined as having had Benign neoplasm of ovary IF they meet the criteria for any of the following on or before the specified date. The earliest date on which the individual meets any of the following criteria on or before the specified date is defined as the first event date:
Primary care
1. Benign neoplasm of ovary diagnosis or history of diagnosis during a consultation
OR
Secondary care
1. ALL diagnoses of Benign neoplasm of ovary or history of diagnosis during a hospitalization
~~~
<h4>Primary care (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//primary_care/CPRD_benign_ovary.csv'>CPRD_benign_ovary.csv</a>)</h4>
<h4>Secondary care diagnoses (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//secondary_care/ICD_benign_ovary.csv'>ICD_benign_ovary.csv</a>)</h4>
<table>
<thead>
<tr>
<th>ICD-10 code</th>
<th>ICD-10 Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left">D27</td>
<td align="left">Benign neoplasm of ovary</td>
</tr>
<tr>
<td align="left">N83.0</td>
<td align="left">Follicular cyst of ovary</td>
</tr>
<tr>
<td align="left">N83.1</td>
<td align="left">Corpus luteum cyst</td>
</tr>
<tr>
<td align="left">N83.2</td>
<td align="left">Other and unspecified ovarian cysts</td>
</tr>
</tbody>
</table>
<h2>Benign neoplasm of stomach and duodenum</h2>
<h4>Implementation</h4>
~~~
At the specified date, a patient is defined as having had Benign neoplasm of stomach and duodenum IF they meet the criteria for any of the following on or before the specified date. The earliest date on which the individual meets any of the following criteria on or before the specified date is defined as the first event date:
Primary care
1. Benign neoplasm of stomach and duodenum diagnosis or history of diagnosis during a consultation
OR
Secondary care
1. ALL diagnoses of Benign neoplasm of stomach and duodenum or history of diagnosis during a hospitalization
~~~
<h4>Primary care (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//primary_care/CPRD_benign_stomach.csv'>CPRD_benign_stomach.csv</a>)</h4>
<table>
<thead>
<tr>
<th>Read code</th>
<th>Read Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="right">7612000</td>
<td align="left">Open excision of polyp of stomach</td>
</tr>
<tr>
<td align="left">B711000</td>
<td align="left">Benign neoplasm of stomach cardia</td>
</tr>
<tr>
<td align="left">B711100</td>
<td align="left">Benign neoplasm of pylorus of stomach</td>
</tr>
<tr>
<td align="left">B711200</td>
<td align="left">Benign neoplasm of fundus of stomach</td>
</tr>
<tr>
<td align="left">B711300</td>
<td align="left">Benign neoplasm of body of stomach</td>
</tr>
<tr>
<td align="left">B711400</td>
<td align="left">Benign neoplasm of pyloric antrum</td>
</tr>
<tr>
<td align="left">B711.00</td>
<td align="left">Benign neoplasm of stomach</td>
</tr>
<tr>
<td align="left">B711.11</td>
<td align="left">Gastric polyp</td>
</tr>
<tr>
<td align="left">B711z00</td>
<td align="left">Benign neoplasm of stomach NOS</td>
</tr>
<tr>
<td align="left">B712000</td>
<td align="left">Benign neoplasm of duodenum</td>
</tr>
<tr>
<td align="left">B712011</td>
<td align="left">Duodenal polyp</td>
</tr>
<tr>
<td align="left">B712100</td>
<td align="left">Benign neoplasm of jejunum</td>
</tr>
<tr>
<td align="left">B712111</td>
<td align="left">Jejunal polyp</td>
</tr>
<tr>
<td align="left">B712200</td>
<td align="left">Benign neoplasm of ileum</td>
</tr>
<tr>
<td align="left">B712.00</td>
<td align="left">Benign neoplasm of small intestine and duodenum</td>
</tr>
<tr>
<td align="left">B712z00</td>
<td align="left">Benign neoplasm of small intestine or duodenum NOS</td>
</tr>
<tr>
<td align="left">J177.00</td>
<td align="left">Gastric polyp</td>
</tr>
<tr>
<td align="left">J177.11</td>
<td align="left">Polyp of stomach</td>
</tr>
<tr>
<td align="left">J178.00</td>
<td align="left">Duodenal polyp</td>
</tr>
<tr>
<td align="left">J178.11</td>
<td align="left">Polyp of duodenum</td>
</tr>
</tbody>
</table>
<h4>Secondary care diagnoses (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//secondary_care/ICD_benign_stomach.csv'>ICD_benign_stomach.csv</a>)</h4>
<table>
<thead>
<tr>
<th>ICD-10 code</th>
<th>ICD-10 Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left">K31.7</td>
<td align="left">Polyp of stomach and duodenum</td>
</tr>
<tr>
<td align="left">D13.1</td>
<td align="left">Benign neoplasm: Stomach</td>
</tr>
<tr>
<td align="left">D13.2</td>
<td align="left">Benign neoplasm: Duodenum</td>
</tr>
<tr>
<td align="left">D13.3</td>
<td align="left">Benign neoplasm: Other and unspecified parts of small intestine</td>
</tr>
</tbody>
</table>
<h2>Bifascicular block</h2>
<h4>Implementation</h4>
~~~
At the specified date, a patient is defined as having had 'Bifascicular block' IF they meet the criteria for any of the following on or before the specified date. The earliest date on which the individual meets any of the following criteria on or before the specified date is defined as the first event date:
Primary care
1. 'Bifascicular block' diagnosis or history of diagnosis during a consultation
OR
Secondary care (ICD10)
1. ALL diagnoses of 'Bifascicular block' or history of diagnosis during a hospitalization
~~~
<h4>Primary care (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//primary_care/CPRD_bifasc_block.csv'>CPRD_bifasc_block.csv</a>)</h4>
<table>
<thead>
<tr>
<th>Read code</th>
<th>Read Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left">329F.00</td>
<td align="left">ECG: right bundle branch and left anterior fascicular block</td>
</tr>
<tr>
<td align="left">329G.00</td>
<td align="left">ECG: right bundle branch and left posterior fascicular block</td>
</tr>
<tr>
<td align="left">G565100</td>
<td align="left">Right BBB with left posterior fascicular block</td>
</tr>
<tr>
<td align="left">G565200</td>
<td align="left">Right BBB with left anterior fascicular block</td>
</tr>
</tbody>
</table>
<h4>Secondary care diagnoses (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//secondary_care/ICD_bifasc_block.csv'>ICD_bifasc_block.csv</a>)</h4>
<table>
<thead>
<tr>
<th>ICD-10 code</th>
<th>ICD-10 Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left">I45.2</td>
<td align="left">Bifascicular block</td>
</tr>
</tbody>
</table>
<h2>Bipolar affective disorder and mania</h2>
<h4>Implementation</h4>
~~~
At the specified date, a patient is defined as having had 'Bipolar affective disorder and mania' and mania IF they meet the criteria for any of the following on or before the specified date. The earliest date on which the individual meets any of the following criteria on or before the specified date is defined as the first event date:
Primary care
1. 'Bipolar affective disorder and mania' and mania diagnosis or history of diagnosis during a consultation
OR
Secondary care
1. ALL diagnoses of 'Bipolar affective disorder and mania' and mania or history of diagnosis during a hospitalization
~~~
<h4>Primary care (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//primary_care/CPRD_BAD.csv'>CPRD_BAD.csv</a>)</h4>
<table>
<thead>
<tr>
<th>Read code</th>
<th>Read Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left">146D.00</td>
<td align="left">H/O: manic depressive disorder</td>
</tr>
<tr>
<td align="left">1S42.00</td>
<td align="left">Manic mood</td>
</tr>
<tr>
<td align="left">212V.00</td>
<td align="left">Bipolar affective disorder resolved</td>
</tr>
<tr>
<td align="left">E110000</td>
<td align="left">Single manic episode, unspecified</td>
</tr>
<tr>
<td align="left">E110100</td>
<td align="left">Single manic episode, mild</td>
</tr>
<tr>
<td align="left">E110200</td>
<td align="left">Single manic episode, moderate</td>
</tr>
<tr>
<td align="left">E110300</td>
<td align="left">Single manic episode, severe without mention of psychosis</td>
</tr>
<tr>
<td align="left">E110400</td>
<td align="left">Single manic episode, severe, with psychosis</td>
</tr>
<tr>
<td align="left">E110500</td>
<td align="left">Single manic episode in partial or unspecified remission</td>
</tr>
<tr>
<td align="left">E110600</td>
<td align="left">Single manic episode in full remission</td>
</tr>
<tr>
<td align="left">E110.00</td>
<td align="left">Manic disorder, single episode</td>
</tr>
<tr>
<td align="left">E110.11</td>
<td align="left">Hypomanic psychoses</td>
</tr>
<tr>
<td align="left">E110z00</td>
<td align="left">Manic disorder, single episode NOS</td>
</tr>
<tr>
<td align="left">E111000</td>
<td align="left">Recurrent manic episodes, unspecified</td>
</tr>
<tr>
<td align="left">E111100</td>
<td align="left">Recurrent manic episodes, mild</td>
</tr>
<tr>
<td align="left">E111200</td>
<td align="left">Recurrent manic episodes, moderate</td>
</tr>
<tr>
<td align="left">E111300</td>
<td align="left">Recurrent manic episodes, severe without mention psychosis</td>
</tr>
<tr>
<td align="left">E111400</td>
<td align="left">Recurrent manic episodes, severe, with psychosis</td>
</tr>
<tr>
<td align="left">E111500</td>
<td align="left">Recurrent manic episodes, partial or unspecified remission</td>
</tr>
<tr>
<td align="left">E111600</td>
<td align="left">Recurrent manic episodes, in full remission</td>
</tr>
<tr>
<td align="left">E111.00</td>
<td align="left">Recurrent manic episodes</td>
</tr>
<tr>
<td align="left">E111z00</td>
<td align="left">Recurrent manic episode NOS</td>
</tr>
<tr>
<td align="left">E114000</td>
<td align="left">Bipolar affective disorder, currently manic, unspecified</td>
</tr>
<tr>
<td align="left">E114100</td>
<td align="left">Bipolar affective disorder, currently manic, mild</td>
</tr>
<tr>
<td align="left">E114200</td>
<td align="left">Bipolar affective disorder, currently manic, moderate</td>
</tr>
<tr>
<td align="left">E114300</td>
<td align="left">Bipolar affect disord, currently manic, severe, no psychosis</td>
</tr>
<tr>
<td align="left">E114400</td>
<td align="left">Bipolar affect disord, currently manic,severe with psychosis</td>
</tr>
<tr>
<td align="left">E114500</td>
<td align="left">Bipolar affect disord,currently manic, part/unspec remission</td>
</tr>
<tr>
<td align="left">E114600</td>
<td align="left">Bipolar affective disorder, currently manic, full remission</td>
</tr>
<tr>
<td align="left">E114.00</td>
<td align="left">Bipolar affective disorder, currently manic</td>
</tr>
<tr>
<td align="left">E114.11</td>
<td align="left">Manic-depressive - now manic</td>
</tr>
<tr>
<td align="left">E114z00</td>
<td align="left">Bipolar affective disorder, currently manic, NOS</td>
</tr>
<tr>
<td align="left">E115000</td>
<td align="left">Bipolar affective disorder, currently depressed, unspecified</td>
</tr>
<tr>
<td align="left">E115100</td>
<td align="left">Bipolar affective disorder, currently depressed, mild</td>
</tr>
<tr>
<td align="left">E115200</td>
<td align="left">Bipolar affective disorder, currently depressed, moderate</td>
</tr>
<tr>
<td align="left">E115300</td>
<td align="left">Bipolar affect disord, now depressed, severe, no psychosis</td>
</tr>
<tr>
<td align="left">E115400</td>
<td align="left">Bipolar affect disord, now depressed, severe with psychosis</td>
</tr>
<tr>
<td align="left">E115500</td>
<td align="left">Bipolar affect disord, now depressed, part/unspec remission</td>
</tr>
<tr>
<td align="left">E115600</td>
<td align="left">Bipolar affective disorder, now depressed, in full remission</td>
</tr>
<tr>
<td align="left">E115.00</td>
<td align="left">Bipolar affective disorder, currently depressed</td>
</tr>
<tr>
<td align="left">E115.11</td>
<td align="left">Manic-depressive - now depressed</td>
</tr>
<tr>
<td align="left">E115z00</td>
<td align="left">Bipolar affective disorder, currently depressed, NOS</td>
</tr>
<tr>
<td align="left">E116000</td>
<td align="left">Mixed bipolar affective disorder, unspecified</td>
</tr>
<tr>
<td align="left">E116100</td>
<td align="left">Mixed bipolar affective disorder, mild</td>
</tr>
<tr>
<td align="left">E116200</td>
<td align="left">Mixed bipolar affective disorder, moderate</td>
</tr>
<tr>
<td align="left">E116300</td>
<td align="left">Mixed bipolar affective disorder, severe, without psychosis</td>
</tr>
<tr>
<td align="left">E116400</td>
<td align="left">Mixed bipolar affective disorder, severe, with psychosis</td>
</tr>
<tr>
<td align="left">E116500</td>
<td align="left">Mixed bipolar affective disorder, partial/unspec remission</td>
</tr>
<tr>
<td align="left">E116600</td>
<td align="left">Mixed bipolar affective disorder, in full remission</td>
</tr>
<tr>
<td align="left">E116.00</td>
<td align="left">Mixed bipolar affective disorder</td>
</tr>
<tr>
<td align="left">E116z00</td>
<td align="left">Mixed bipolar affective disorder, NOS</td>
</tr>
<tr>
<td align="left">E117000</td>
<td align="left">Unspecified bipolar affective disorder, unspecified</td>
</tr>
<tr>
<td align="left">E117100</td>
<td align="left">Unspecified bipolar affective disorder, mild</td>
</tr>
<tr>
<td align="left">E117200</td>
<td align="left">Unspecified bipolar affective disorder, moderate</td>
</tr>
<tr>
<td align="left">E117300</td>
<td align="left">Unspecified bipolar affective disorder, severe, no psychosis</td>
</tr>
<tr>
<td align="left">E117400</td>
<td align="left">Unspecified bipolar affective disorder,severe with psychosis</td>
</tr>
<tr>
<td align="left">E117500</td>
<td align="left">Unspecified bipolar affect disord, partial/unspec remission</td>
</tr>
<tr>
<td align="left">E117600</td>
<td align="left">Unspecified bipolar affective disorder, in full remission</td>
</tr>
<tr>
<td align="left">E117.00</td>
<td align="left">Unspecified bipolar affective disorder</td>
</tr>
<tr>
<td align="left">E117z00</td>
<td align="left">Unspecified bipolar affective disorder, NOS</td>
</tr>
<tr>
<td align="left">E11..11</td>
<td align="left">Bipolar psychoses</td>
</tr>
<tr>
<td align="left">E11..13</td>
<td align="left">Manic psychoses</td>
</tr>
<tr>
<td align="left">E11y000</td>
<td align="left">Unspecified manic-depressive psychoses</td>
</tr>
<tr>
<td align="left">E11y100</td>
<td align="left">Atypical manic disorder</td>
</tr>
<tr>
<td align="left">E11y300</td>
<td align="left">Other mixed manic-depressive psychoses</td>
</tr>
<tr>
<td align="left">E11y.00</td>
<td align="left">Other and unspecified manic-depressive psychoses</td>
</tr>
<tr>
<td align="left">E11yz00</td>
<td align="left">Other and unspecified manic-depressive psychoses NOS</td>
</tr>
<tr>
<td align="left">Eu30000</td>
<td align="left">[X]Hypomania</td>
</tr>
<tr>
<td align="left">Eu30100</td>
<td align="left">[X]Mania without psychotic symptoms</td>
</tr>
<tr>
<td align="left">Eu30200</td>
<td align="left">[X]Mania with psychotic symptoms</td>
</tr>
<tr>
<td align="left">Eu30211</td>
<td align="left">[X]Mania with mood-congruent psychotic symptoms</td>
</tr>
<tr>
<td align="left">Eu30212</td>
<td align="left">[X]Mania with mood-incongruent psychotic symptoms</td>
</tr>
<tr>
<td align="left">Eu30.00</td>
<td align="left">[X]Manic episode</td>
</tr>
<tr>
<td align="left">Eu30.11</td>
<td align="left">[X]Bipolar disorder, single manic episode</td>
</tr>
<tr>
<td align="left">Eu30y00</td>
<td align="left">[X]Other manic episodes</td>
</tr>
<tr>
<td align="left">Eu30z00</td>
<td align="left">[X]Manic episode, unspecified</td>
</tr>
<tr>
<td align="left">Eu30z11</td>
<td align="left">[X]Mania NOS</td>
</tr>
<tr>
<td align="left">Eu31000</td>
<td align="left">[X]Bipolar affective disorder, current episode hypomanic</td>
</tr>
<tr>
<td align="left">Eu31100</td>
<td align="left">[X]Bipolar affect disorder cur epi manic wout psychotic symp</td>
</tr>
<tr>
<td align="left">Eu31200</td>
<td align="left">[X]Bipolar affect disorder cur epi manic with psychotic symp</td>
</tr>
<tr>
<td align="left">Eu31300</td>
<td align="left">[X]Bipolar affect disorder cur epi mild or moderate depressn</td>
</tr>
<tr>
<td align="left">Eu31400</td>
<td align="left">[X]Bipol aff disord, curr epis sev depress, no psychot symp</td>
</tr>
<tr>
<td align="left">Eu31500</td>
<td align="left">[X]Bipolar affect dis cur epi severe depres with psyc symp</td>
</tr>
<tr>
<td align="left">Eu31600</td>
<td align="left">[X]Bipolar affective disorder, current episode mixed</td>
</tr>
<tr>
<td align="left">Eu31700</td>
<td align="left">[X]Bipolar affective disorder, currently in remission</td>
</tr>
<tr>
<td align="left">Eu31800</td>
<td align="left">[X]Bipolar affective disorder type I</td>
</tr>
<tr>
<td align="left">Eu31900</td>
<td align="left">[X]Bipolar affective disorder type II</td>
</tr>
<tr>
<td align="left">Eu31911</td>
<td align="left">[X]Bipolar II disorder</td>
</tr>
<tr>
<td align="left">Eu31.00</td>
<td align="left">[X]Bipolar affective disorder</td>
</tr>
<tr>
<td align="left">Eu31.11</td>
<td align="left">[X]Manic-depressive illness</td>
</tr>
<tr>
<td align="left">Eu31.12</td>
<td align="left">[X]Manic-depressive psychosis</td>
</tr>
<tr>
<td align="left">Eu31.13</td>
<td align="left">[X]Manic-depressive reaction</td>
</tr>
<tr>
<td align="left">Eu31y00</td>
<td align="left">[X]Other bipolar affective disorders</td>
</tr>
<tr>
<td align="left">Eu31y11</td>
<td align="left">[X]Bipolar II disorder</td>
</tr>
<tr>
<td align="left">Eu31y12</td>
<td align="left">[X]Recurrent manic episodes</td>
</tr>
<tr>
<td align="left">Eu31z00</td>
<td align="left">[X]Bipolar affective disorder, unspecified</td>
</tr>
<tr>
<td align="left">Eu33213</td>
<td align="left">[X]Manic-depress psychosis,depressd,no psychotic symptoms</td>
</tr>
<tr>
<td align="left">Eu33312</td>
<td align="left">[X]Manic-depress psychosis,depressed type+psychotic symptoms</td>
</tr>
<tr>
<td align="left">ZRby100</td>
<td align="left">Profile of mood states, bipolar</td>
</tr>
<tr>
<td align="left">ZV11111</td>
<td align="left">[V]Personal history of manic-depressive psychosis</td>
</tr>
<tr>
<td align="left">ZV11112</td>
<td align="left">[V]Personal history of manic-depressive psychosis</td>
</tr>
</tbody>
</table>
<h4>Secondary care diagnoses (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//secondary_care/ICD_BAD.csv'>ICD_BAD.csv</a>)</h4>
<table>
<thead>
<tr>
<th>ICD-10 code</th>
<th>ICD-10 Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left">F30</td>
<td align="left">Manic episode</td>
</tr>
<tr>
<td align="left">F31</td>
<td align="left">Bipolar affective disorder</td>
</tr>
</tbody>
</table>
<h2>Bronchiectasis</h2>
<h4>Implementation</h4>
~~~
At the specified date, a patient is defined as having had 'Bronchiectasis' IF they meet the criteria for any of the following on or before the specified date. The earliest date on which the individual meets any of the following criteria on or before the specified date is defined as the first event date:
Primary care
1. 'Bronchiectasis' diagnosis or history of diagnosis during a consultation
OR
Secondary care (ICD10)
1. ALL diagnoses of 'Bronchiectasis' or history of diagnosis during a hospitalization
~~~
<h4>Primary care (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//primary_care/CPRD_bronchiectasis.csv'>CPRD_bronchiectasis.csv</a>)</h4>
<table>
<thead>
<tr>
<th>Read code</th>
<th>Read Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left">A115.00</td>
<td align="left">Tuberculous bronchiectasis</td>
</tr>
<tr>
<td align="left">H340.00</td>
<td align="left">Recurrent bronchiectasis</td>
</tr>
<tr>
<td align="left">H341.00</td>
<td align="left">Post-infective bronchiectasis</td>
</tr>
<tr>
<td align="left">H34..00</td>
<td align="left">Bronchiectasis</td>
</tr>
<tr>
<td align="left">H34z.00</td>
<td align="left">Bronchiectasis NOS</td>
</tr>
<tr>
<td align="left">P861.00</td>
<td align="left">Congenital bronchiectasis</td>
</tr>
</tbody>
</table>
<h4>Secondary care diagnoses (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//secondary_care/ICD_bronchiectasis.csv'>ICD_bronchiectasis.csv</a>)</h4>
<table>
<thead>
<tr>
<th>ICD-10 code</th>
<th>ICD-10 Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left">J47</td>
<td align="left">Bronchiectasis</td>
</tr>
<tr>
<td align="left">Q33.4</td>
<td align="left">Congenital bronchiectasis</td>
</tr>
</tbody>
</table>
<h2>COPD</h2>
<h4>Implementation</h4>
~~~
At the specified date, a patient is defined as having had COPD IF they meet the criteria for any of the following on or before the specified date. The earliest date on which the individual meets any of the following criteria on or before the specified date is defined as the first event date:
Primary care
1. COPD diagnosis or history of diagnosis during a consultation
OR
Secondary care (ICD10)
1. ALL diagnoses of COPD or history of diagnosis during a hospitalization
~~~
<h4>Primary care (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//primary_care/CPRD_COPD.csv'>CPRD_COPD.csv</a>)</h4>
<table>
<thead>
<tr>
<th>Read code</th>
<th>Read Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left">14B3.12</td>
<td align="left">History of chronic obstructive pulmonary disease</td>
</tr>
<tr>
<td align="left">H310000</td>
<td align="left">Chronic catarrhal bronchitis</td>
</tr>
<tr>
<td align="left">H310.00</td>
<td align="left">Simple chronic bronchitis</td>
</tr>
<tr>
<td align="left">H310z00</td>
<td align="left">Simple chronic bronchitis NOS</td>
</tr>
<tr>
<td align="left">H311000</td>
<td align="left">Purulent chronic bronchitis</td>
</tr>
<tr>
<td align="left">H311100</td>
<td align="left">Fetid chronic bronchitis</td>
</tr>
<tr>
<td align="left">H311.00</td>
<td align="left">Mucopurulent chronic bronchitis</td>
</tr>
<tr>
<td align="left">H311z00</td>
<td align="left">Mucopurulent chronic bronchitis NOS</td>
</tr>
<tr>
<td align="left">H312000</td>
<td align="left">Chronic asthmatic bronchitis</td>
</tr>
<tr>
<td align="left">H312011</td>
<td align="left">Chronic wheezy bronchitis</td>
</tr>
<tr>
<td align="left">H312100</td>
<td align="left">Emphysematous bronchitis</td>
</tr>
<tr>
<td align="left">H312200</td>
<td align="left">Acute exacerbation of chronic obstructive airways disease</td>
</tr>
<tr>
<td align="left">H312300</td>
<td align="left">Bronchiolitis obliterans</td>
</tr>
<tr>
<td align="left">H312.00</td>
<td align="left">Obstructive chronic bronchitis</td>
</tr>
<tr>
<td align="left">H312z00</td>
<td align="left">Obstructive chronic bronchitis NOS</td>
</tr>
<tr>
<td align="left">H313.00</td>
<td align="left">Mixed simple and mucopurulent chronic bronchitis</td>
</tr>
<tr>
<td align="left">H31..00</td>
<td align="left">Chronic bronchitis</td>
</tr>
<tr>
<td align="left">H31y100</td>
<td align="left">Chronic tracheobronchitis</td>
</tr>
<tr>
<td align="left">H31y.00</td>
<td align="left">Other chronic bronchitis</td>
</tr>
<tr>
<td align="left">H31yz00</td>
<td align="left">Other chronic bronchitis NOS</td>
</tr>
<tr>
<td align="left">H31z.00</td>
<td align="left">Chronic bronchitis NOS</td>
</tr>
<tr>
<td align="left">H320000</td>
<td align="left">Segmental bullous emphysema</td>
</tr>
<tr>
<td align="left">H320100</td>
<td align="left">Zonal bullous emphysema</td>
</tr>
<tr>
<td align="left">H320200</td>
<td align="left">Giant bullous emphysema</td>
</tr>
<tr>
<td align="left">H320300</td>
<td align="left">Bullous emphysema with collapse</td>
</tr>
<tr>
<td align="left">H320.00</td>
<td align="left">Chronic bullous emphysema</td>
</tr>
<tr>
<td align="left">H320z00</td>
<td align="left">Chronic bullous emphysema NOS</td>
</tr>
<tr>
<td align="left">H321.00</td>
<td align="left">Panlobular emphysema</td>
</tr>
<tr>
<td align="left">H322.00</td>
<td align="left">Centrilobular emphysema</td>
</tr>
<tr>
<td align="left">H32..00</td>
<td align="left">Emphysema</td>
</tr>
<tr>
<td align="left">H32y000</td>
<td align="left">Acute vesicular emphysema</td>
</tr>
<tr>
<td align="left">H32y100</td>
<td align="left">Atrophic (senile) emphysema</td>
</tr>
<tr>
<td align="left">H32y111</td>
<td align="left">Acute interstitial emphysema</td>
</tr>
<tr>
<td align="left">H32y200</td>
<td align="left">MacLeod's unilateral emphysema</td>
</tr>
<tr>
<td align="left">H32y.00</td>
<td align="left">Other emphysema</td>
</tr>
<tr>
<td align="left">H32yz00</td>
<td align="left">Other emphysema NOS</td>
</tr>
<tr>
<td align="left">H32z.00</td>
<td align="left">Emphysema NOS</td>
</tr>
<tr>
<td align="left">H36..00</td>
<td align="left">Mild chronic obstructive pulmonary disease</td>
</tr>
<tr>
<td align="left">H37..00</td>
<td align="left">Moderate chronic obstructive pulmonary disease</td>
</tr>
<tr>
<td align="left">H38..00</td>
<td align="left">Severe chronic obstructive pulmonary disease</td>
</tr>
<tr>
<td align="left">H39..00</td>
<td align="left">Very severe chronic obstructive pulmonary disease</td>
</tr>
<tr>
<td align="left">H3A..00</td>
<td align="left">End stage chronic obstructive airways disease</td>
</tr>
<tr>
<td align="left">H3...00</td>
<td align="left">Chronic obstructive pulmonary disease</td>
</tr>
<tr>
<td align="left">H3...11</td>
<td align="left">Chronic obstructive airways disease</td>
</tr>
<tr>
<td align="left">H3y0.00</td>
<td align="left">Chronic obstruct pulmonary dis with acute lower resp infectn</td>
</tr>
<tr>
<td align="left">H3y1.00</td>
<td align="left">Chron obstruct pulmonary dis wth acute exacerbation, unspec</td>
</tr>
<tr>
<td align="left">H3y..00</td>
<td align="left">Other specified chronic obstructive airways disease</td>
</tr>
<tr>
<td align="left">H3y..11</td>
<td align="left">Other specified chronic obstructive pulmonary disease</td>
</tr>
<tr>
<td align="left">H3z..00</td>
<td align="left">Chronic obstructive airways disease NOS</td>
</tr>
<tr>
<td align="left">H3z..11</td>
<td align="left">Chronic obstructive pulmonary disease NOS</td>
</tr>
<tr>
<td align="left">H464000</td>
<td align="left">Chronic emphysema due to chemical fumes</td>
</tr>
<tr>
<td align="left">H464100</td>
<td align="left">Obliterative bronchiolitis due to chemical fumes</td>
</tr>
<tr>
<td align="left">H583200</td>
<td align="left">Eosinophilic bronchitis</td>
</tr>
<tr>
<td align="left">Hyu3000</td>
<td align="left">[X]Other emphysema</td>
</tr>
<tr>
<td align="left">Hyu3100</td>
<td align="left">[X]Other specified chronic obstructive pulmonary disease</td>
</tr>
</tbody>
</table>
<h4>Secondary care diagnoses (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//secondary_care/ICD_COPD.csv'>ICD_COPD.csv</a>)</h4>
<table>
<thead>
<tr>
<th>ICD-10 code</th>
<th>ICD-10 Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left">J40</td>
<td align="left">Bronchitis, not specified as acute or chronic</td>
</tr>
<tr>
<td align="left">J41</td>
<td align="left">Simple and mucopurulent chronic bronchitis</td>
</tr>
<tr>
<td align="left">J42</td>
<td align="left">Unspecified chronic bronchitis</td>
</tr>
<tr>
<td align="left">J43</td>
<td align="left">Emphysema</td>
</tr>
<tr>
<td align="left">J44</td>
<td align="left">Other chronic obstructive pulmonary disease</td>
</tr>
</tbody>
</table>
<h2>Carcinoma in situ_cervical</h2>
<h4>Implementation</h4>
~~~
At the specified date, a patient is defined as having had Carcinoma in situ_cervical IF they meet the criteria for any of the following on or before the specified date. The earliest date on which the individual meets any of the following criteria on or before the specified date is defined as the first event date:
Primary care
1. Carcinoma in situ_cervical diagnosis or history of diagnosis during a consultation
OR
Secondary care
1. ALL diagnoses of Carcinoma in situ_cervical or history of diagnosis during a hospitalization
~~~
<h4>Primary care (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//primary_care/CPRD_cin_cervical.csv'>CPRD_cin_cervical.csv</a>)</h4>
<table>
<thead>
<tr>
<th>Read code</th>
<th>Read Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left">4K2..11</td>
<td align="left">Dyskaryosis on cervical smear</td>
</tr>
<tr>
<td align="left">4K2J.00</td>
<td align="left">Cervical smear - low grade dyskaryosis</td>
</tr>
<tr>
<td align="left">4K2K.00</td>
<td align="left">Cervical smear - high grade dyskaryosis (moderate)</td>
</tr>
<tr>
<td align="left">4K2L.00</td>
<td align="left">Cervical smear - high grade dyskaryosis (severe)</td>
</tr>
<tr>
<td align="left">4K2N.00</td>
<td align="left">Cervical smear - ?endocervical type glandular neoplasia</td>
</tr>
<tr>
<td align="left">4K2P.00</td>
<td align="left">Cervical smear - ?non-cervical type glandular neoplasia</td>
</tr>
<tr>
<td align="left">B831000</td>
<td align="left">Carcinoma in situ of endocervix</td>
</tr>
<tr>
<td align="left">B831100</td>
<td align="left">Carcinoma in situ of exocervix</td>
</tr>
<tr>
<td align="left">B831.00</td>
<td align="left">Carcinoma in situ of cervix uteri</td>
</tr>
<tr>
<td align="left">B831.11</td>
<td align="left">CIN III - carcinoma in situ of cervix</td>
</tr>
<tr>
<td align="left">B831.12</td>
<td align="left">Cervical intraepithelial neoplasia</td>
</tr>
<tr>
<td align="left">B831.13</td>
<td align="left">Cervical intraepithelial neoplasia grade III</td>
</tr>
<tr>
<td align="left">ByuFA00</td>
<td align="left">[X]Carcinoma in situ of other parts of cervix</td>
</tr>
<tr>
<td align="left">K551000</td>
<td align="left">Anaplasia of cervix</td>
</tr>
<tr>
<td align="left">K551100</td>
<td align="left">Epidermidization of cervix</td>
</tr>
<tr>
<td align="left">K551300</td>
<td align="left">Mild cervical dysplasia</td>
</tr>
<tr>
<td align="left">K551311</td>
<td align="left">Cervical intraepithelial neoplasia grade I</td>
</tr>
<tr>
<td align="left">K551400</td>
<td align="left">Moderate cervical dysplasia</td>
</tr>
<tr>
<td align="left">K551411</td>
<td align="left">Cervical intraepithelial neoplasia grade II</td>
</tr>
<tr>
<td align="left">K551.00</td>
<td align="left">Dysplasia of cervix uteri</td>
</tr>
<tr>
<td align="left">K551.12</td>
<td align="left">CIN I - II, cervical dysplasia</td>
</tr>
<tr>
<td align="left">K551X00</td>
<td align="left">Severe cervical dysplasia, not elsewhere classified</td>
</tr>
<tr>
<td align="left">K551z00</td>
<td align="left">Dysplasia of cervix NOS</td>
</tr>
<tr>
<td align="left">R150000</td>
<td align="left">[D]Dyskaryotic cervical smear</td>
</tr>
<tr>
<td align="left">ZV13B00</td>
<td align="left">[V]Personal history of mild cervical dysplasia</td>
</tr>
<tr>
<td align="left">ZV13B11</td>
<td align="left">[V]PH of cervical intraepithelial neoplasia, grade I</td>
</tr>
<tr>
<td align="left">ZV13C00</td>
<td align="left">[V]Personal history of moderate cervical dysplasia</td>
</tr>
<tr>
<td align="left">ZV13C11</td>
<td align="left">[V]PH of cervical intraepithelial neoplasia grade II</td>
</tr>
<tr>
<td align="left">ZV13D00</td>
<td align="left">[V]Personal history of severe cervical dysplasia</td>
</tr>
<tr>
<td align="left">ZV13E00</td>
<td align="left">[V]PH of cervical intraepithelial neoplasia, grade III</td>
</tr>
</tbody>
</table>
<h4>Secondary care diagnoses (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//secondary_care/ICD_cin_cervical.csv'>ICD_cin_cervical.csv</a>)</h4>
<table>
<thead>
<tr>
<th>ICD-10 code</th>
<th>ICD-10 Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left">D06</td>
<td align="left">Carcinoma in situ of cervix uteri</td>
</tr>
<tr>
<td align="left">N87</td>
<td align="left">Dysplasia of cervix uteri</td>
</tr>
</tbody>
</table>
<h2>Carpal tunnel syndrome</h2>
<h4>Implementation</h4>
~~~
At the specified date, a patient is defined as having had 'Carpal tunnel syndrome' IF they meet the criteria for any of the following on or before the specified date. The earliest date on which the individual meets any of the following criteria on or before the specified date is defined as the first event date:
Primary care
1. 'Carpal tunnel syndrome' diagnosis, history of diagnosis or procedure during a consultation
OR
Secondary care (ICD10)
1. ALL diagnoses of 'Carpal tunnel syndrome' or history of diagnosis during a hospitalization
OR
Secondary care (OPCS4)
1. ALL procedures for 'Carpal tunnel syndrome' or history of diagnosis during a hospitalization
~~~
<h4>Primary care (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//primary_care/CPRD_carpal_tunnel.csv'>CPRD_carpal_tunnel.csv</a>)</h4>
<table>
<thead>
<tr>
<th>Read code</th>
<th>Read Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="right">7056000</td>
<td align="left">Carpal tunnel release</td>
</tr>
<tr>
<td align="right">7056011</td>
<td align="left">Carpal tunnel decompression</td>
</tr>
<tr>
<td align="right">7056200</td>
<td align="left">Re-release of carpal tunnel</td>
</tr>
<tr>
<td align="right">7056400</td>
<td align="left">Endoscopic carpal tunnel release</td>
</tr>
<tr>
<td align="left">705A100</td>
<td align="left">Revision of carpal tunnel release</td>
</tr>
<tr>
<td align="left">85BE.00</td>
<td align="left">Injection of carpal tunnel</td>
</tr>
<tr>
<td align="left">8Hlr.00</td>
<td align="left">Referral for carpal tunnel injection</td>
</tr>
<tr>
<td align="left">9Nu3000</td>
<td align="left">Consent given for carpal tunnel injection</td>
</tr>
<tr>
<td align="left">F340.00</td>
<td align="left">Carpal tunnel syndrome</td>
</tr>
<tr>
<td align="left">F340.12</td>
<td align="left">CTS - Carpal tunnel syndrome</td>
</tr>
</tbody>
</table>
<h4>Secondary care diagnoses (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//secondary_care/ICD_carpal_tunnel.csv'>ICD_carpal_tunnel.csv</a>)</h4>
<table>
<thead>
<tr>
<th>ICD-10 code</th>
<th>ICD-10 Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left">G56.0</td>
<td align="left">Carpal tunnel syndrome</td>
</tr>
</tbody>
</table>
<h4>Secondary care procedures (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//secondary_care/OPCS_carpal_tunnel.csv'>OPCS_carpal_tunnel.csv</a>)</h4>
<table>
<thead>
<tr>
<th>OPCS-4 code</th>
<th>OPCS-4 Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left">A65.1</td>
<td align="left">Carpal tunnel release</td>
</tr>
<tr>
<td align="left">A69.2</td>
<td align="left">Revision of carpal tunnel release</td>
</tr>
</tbody>
</table>
<h2>Cataract</h2>
<h4>Implementation</h4>
~~~
At the specified date, a patient is defined as having had 'Cataract' IF they meet the criteria for any of the following on or before the specified date. The earliest date on which the individual meets any of the following criteria on or before the specified date is defined as the first event date:
Primary care
1. 'Cataract' diagnosis or history of diagnosis during a consultation
OR
Secondary care
1. ALL diagnoses of 'Cataract' or history of diagnosis during a hospitalization
OR
Secondary care (OPCS4)
1. ALL procedures for 'Cataract' during a hospitalization
~~~
<h4>Primary care (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//primary_care/CPRD_cataract.csv'>CPRD_cataract.csv</a>)</h4>
<table>
<thead>
<tr>
<th>Read code</th>
<th>Read Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="right">1483</td>
<td align="left">H/O: cataract</td>
</tr>
<tr>
<td align="left">14N9.00</td>
<td align="left">H/O: R cataract extraction</td>
</tr>
<tr>
<td align="left">14NA.00</td>
<td align="left">H/O: L cataract extraction</td>
</tr>
<tr>
<td align="left">14NC.00</td>
<td align="left">H/O: Bilateral cataract extraction</td>
</tr>
<tr>
<td align="left">22E5.00</td>
<td align="left">O/E - cataract present</td>
</tr>
<tr>
<td align="left">2BT0.00</td>
<td align="left">O/E - Right cataract present</td>
</tr>
<tr>
<td align="left">2BT1.00</td>
<td align="left">O/E - Left cataract present</td>
</tr>
<tr>
<td align="left">2BT..00</td>
<td align="left">Cataract observation</td>
</tr>
<tr>
<td align="left">7263011</td>
<td align="left">Needling of lens for cataract</td>
</tr>
<tr>
<td align="left">7263.12</td>
<td align="left">Extracapsular extraction of cataract</td>
</tr>
<tr>
<td align="left">7264.11</td>
<td align="left">Intracapsular extraction of cataract</td>
</tr>
<tr>
<td align="left">7266100</td>
<td align="left">Discission of cataract</td>
</tr>
<tr>
<td align="left">7266.11</td>
<td align="left">Other extraction of cataract</td>
</tr>
<tr>
<td align="left">7267600</td>
<td align="left">Cataract extraction and insertion of intraocular lens</td>
</tr>
<tr>
<td align="left">8H5H.00</td>
<td align="left">Referral for cataract extraction</td>
</tr>
<tr>
<td align="left">8HTV.00</td>
<td align="left">Referral to cataract clinic</td>
</tr>
<tr>
<td align="left">8LC0.00</td>
<td align="left">Cataract operation planned</td>
</tr>
<tr>
<td align="left">C108F00</td>
<td align="left">Insulin dependent diabetes mellitus with diabetic cataract</td>
</tr>
<tr>
<td align="left">C108F11</td>
<td align="left">Type I diabetes mellitus with diabetic cataract</td>
</tr>
<tr>
<td align="left">C108F12</td>
<td align="left">Type 1 diabetes mellitus with diabetic cataract</td>
</tr>
<tr>
<td align="left">C109E00</td>
<td align="left">Non-insulin depend diabetes mellitus with diabetic cataract</td>
</tr>
<tr>
<td align="left">C109E11</td>
<td align="left">Type II diabetes mellitus with diabetic cataract</td>
</tr>
<tr>
<td align="left">C109E12</td>
<td align="left">Type 2 diabetes mellitus with diabetic cataract</td>
</tr>
<tr>
<td align="left">C10EF00</td>
<td align="left">Type 1 diabetes mellitus with diabetic cataract</td>
</tr>
<tr>
<td align="left">C10EF12</td>
<td align="left">Insulin dependent diabetes mellitus with diabetic cataract</td>
</tr>
<tr>
<td align="left">C10FE00</td>
<td align="left">Type 2 diabetes mellitus with diabetic cataract</td>
</tr>
<tr>
<td align="left">C10FE11</td>
<td align="left">Type II diabetes mellitus with diabetic cataract</td>
</tr>
<tr>
<td align="left">F460000</td>
<td align="left">Unspecified infantile cataract</td>
</tr>
<tr>
<td align="left">F460100</td>
<td align="left">Unspecified juvenile cataract</td>
</tr>
<tr>
<td align="left">F460200</td>
<td align="left">Unspecified presenile cataract</td>
</tr>
<tr>
<td align="left">F460300</td>
<td align="left">Anterior subcapsular polar cataract</td>
</tr>
<tr>
<td align="left">F460400</td>
<td align="left">Posterior subcapsular polar cataract</td>
</tr>
<tr>
<td align="left">F460500</td>
<td align="left">Cortical cataract</td>
</tr>
<tr>
<td align="left">F460600</td>
<td align="left">Lamellar zonular cataract</td>
</tr>
<tr>
<td align="left">F460700</td>
<td align="left">Nuclear cataract</td>
</tr>
<tr>
<td align="left">F460.00</td>
<td align="left">Infantile, juvenile and presenile cataracts</td>
</tr>
<tr>
<td align="left">F460x00</td>
<td align="left">Combined nonsenile cataract</td>
</tr>
<tr>
<td align="left">F460y00</td>
<td align="left">Other nonsenile cataract</td>
</tr>
<tr>
<td align="left">F460z00</td>
<td align="left">Nonsenile cataract NOS</td>
</tr>
<tr>
<td align="left">F461000</td>
<td align="left">Unspecified senile cataract</td>
</tr>
<tr>
<td align="left">F461100</td>
<td align="left">Lens capsule pseudoexfoliation</td>
</tr>
<tr>
<td align="left">F461200</td>
<td align="left">Coronary cataract</td>
</tr>
<tr>
<td align="left">F461300</td>
<td align="left">Punctate cataract</td>
</tr>
<tr>
<td align="left">F461400</td>
<td align="left">Incipient cataract NOS</td>
</tr>
<tr>
<td align="left">F461500</td>
<td align="left">Immature cataract NOS</td>
</tr>
<tr>
<td align="left">F461600</td>
<td align="left">Anterior subcapsular polar senile cataract</td>
</tr>
<tr>
<td align="left">F461700</td>
<td align="left">Posterior subcapsular polar senile cataract</td>
</tr>
<tr>
<td align="left">F461800</td>
<td align="left">Cortical senile cataract</td>
</tr>
<tr>
<td align="left">F461900</td>
<td align="left">Nuclear senile cataract</td>
</tr>
<tr>
<td align="left">F461A00</td>
<td align="left">Total, mature senile cataract</td>
</tr>
<tr>
<td align="left">F461B00</td>
<td align="left">Hypermature cataract</td>
</tr>
<tr>
<td align="left">F461B11</td>
<td align="left">Morgagni cataract</td>
</tr>
<tr>
<td align="left">F461.00</td>
<td align="left">Senile cataract</td>
</tr>
<tr>
<td align="left">F461x00</td>
<td align="left">Combined senile cataract</td>
</tr>
<tr>
<td align="left">F461y00</td>
<td align="left">Other senile cataract</td>
</tr>
<tr>
<td align="left">F461z00</td>
<td align="left">Senile cataract NOS</td>
</tr>
<tr>
<td align="left">F463000</td>
<td align="left">Unspecified cataracta complicata</td>
</tr>
<tr>
<td align="left">F463200</td>
<td align="left">Cataract in eye inflammatory disorder</td>
</tr>
<tr>
<td align="left">F463300</td>
<td align="left">Cataract with neovascularization</td>
</tr>
<tr>
<td align="left">F463400</td>
<td align="left">Cataract in degenerative disorder</td>
</tr>
<tr>
<td align="left">F463.00</td>
<td align="left">Cataract secondary to ocular disease</td>
</tr>
<tr>
<td align="left">F463z00</td>
<td align="left">Cataract secondary to ocular disorder NOS</td>
</tr>
<tr>
<td align="left">F464000</td>
<td align="left">Diabetic cataract</td>
</tr>
<tr>
<td align="left">F464100</td>
<td align="left">Tetanic cataract</td>
</tr>
<tr>
<td align="left">F464200</td>
<td align="left">Myotonic cataract</td>
</tr>
<tr>
<td align="left">F464300</td>
<td align="left">Cataract associated with other syndromes</td>
</tr>
<tr>
<td align="left">F464.00</td>
<td align="left">Cataract due to other disorder</td>
</tr>
<tr>
<td align="left">F464z00</td>
<td align="left">Cataract due to other disorder NOS</td>
</tr>
<tr>
<td align="left">F465000</td>
<td align="left">Unspecified secondary cataract</td>
</tr>
<tr>
<td align="left">F465200</td>
<td align="left">Other after cataract with vision normal</td>
</tr>
<tr>
<td align="left">F465300</td>
<td align="left">After-cataract with vision obscured</td>
</tr>
<tr>
<td align="left">F465500</td>
<td align="left">Posterior capsule opacification</td>
</tr>
<tr>
<td align="left">F465.00</td>
<td align="left">After cataract</td>
</tr>
<tr>
<td align="left">F465z00</td>
<td align="left">After cataract NOS</td>
</tr>
<tr>
<td align="left">F466.00</td>
<td align="left">Bilateral cataracts</td>
</tr>
<tr>
<td align="left">F46..00</td>
<td align="left">Cataract</td>
</tr>
<tr>
<td align="left">F46y.00</td>
<td align="left">Other cataract</td>
</tr>
<tr>
<td align="left">F46yz00</td>
<td align="left">Other cataract NOS</td>
</tr>
<tr>
<td align="left">F46z000</td>
<td align="left">Immature cortical cataract</td>
</tr>
<tr>
<td align="left">F46z.00</td>
<td align="left">Cataract NOS</td>
</tr>
<tr>
<td align="left">F4B4B00</td>
<td align="left">Keratopathy following cataract surgery</td>
</tr>
<tr>
<td align="left">F4B4C00</td>
<td align="left">Bullous aphakic keratopathy following cataract surgery</td>
</tr>
<tr>
<td align="left">F4K2D00</td>
<td align="left">Vitreous syndrome following cataract surgery</td>
</tr>
<tr>
<td align="left">FyuE000</td>
<td align="left">[X]Other senile cataract</td>
</tr>
<tr>
<td align="left">FyuE100</td>
<td align="left">[X]Other specified cataract</td>
</tr>
<tr>
<td align="left">FyuE400</td>
<td align="left">[X]Cataract in other diseases classified elsewhere</td>
</tr>
<tr>
<td align="left">P330.00</td>
<td align="left">Congenital cataract, unspecified</td>
</tr>
<tr>
<td align="left">P331000</td>
<td align="left">Capsular cataract</td>
</tr>
<tr>
<td align="left">P331100</td>
<td align="left">Subcapsular cataract</td>
</tr>
<tr>
<td align="left">P331.00</td>
<td align="left">Capsular and subcapsular cataract</td>
</tr>
<tr>
<td align="left">P331z00</td>
<td align="left">Capsular or subcapsular cataract NOS</td>
</tr>
<tr>
<td align="left">P332000</td>
<td align="left">Cortical cataract - congenital</td>
</tr>
<tr>
<td align="left">P332100</td>
<td align="left">Zonular cataract</td>
</tr>
<tr>
<td align="left">P332.00</td>
<td align="left">Cortical and zonular cataract</td>
</tr>
<tr>
<td align="left">P332z00</td>
<td align="left">Cortical or zonular cataract NOS</td>
</tr>
<tr>
<td align="left">P333.00</td>
<td align="left">Nuclear cataract - congenital</td>
</tr>
<tr>
<td align="left">P334000</td>
<td align="left">Total congenital cataract</td>
</tr>
<tr>
<td align="left">P334z00</td>
<td align="left">Total or subtotal congenital cataract NOS</td>
</tr>
<tr>
<td align="left">P33..00</td>
<td align="left">Congenital cataract and lens anomalies</td>
</tr>
<tr>
<td align="left">P33y000</td>
<td align="left">Blue dot cataract</td>
</tr>
<tr>
<td align="left">P33y100</td>
<td align="left">Congenital membranous cataract</td>
</tr>
<tr>
<td align="left">P33y.00</td>
<td align="left">Other specified congenital cataract or lens anomaly</td>
</tr>
<tr>
<td align="left">P33yz00</td>
<td align="left">Other congenital cataract or lens anomaly NOS</td>
</tr>
<tr>
<td align="left">P33z.00</td>
<td align="left">Congenital cataract or lens anomaly NOS</td>
</tr>
<tr>
<td align="left">ZV45611</td>
<td align="left">[V]State following cataract extraction</td>
</tr>
</tbody>
</table>
<h4>Secondary care diagnoses (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//secondary_care/ICD_cataract.csv'>ICD_cataract.csv</a>)</h4>
<table>
<thead>
<tr>
<th>ICD-10 code</th>
<th>ICD-10 Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left">H25</td>
<td align="left">Senile cataract</td>
</tr>
<tr>
<td align="left">H26.0</td>
<td align="left">Infantile, juvenile and presenile cataract</td>
</tr>
<tr>
<td align="left">H26.2</td>
<td align="left">Complicated cataract</td>
</tr>
<tr>
<td align="left">H26.4</td>
<td align="left">After-cataract</td>
</tr>
<tr>
<td align="left">H26.8</td>
<td align="left">Other specified cataract</td>
</tr>
<tr>
<td align="left">H26.9</td>
<td align="left">Cataract, unspecified</td>
</tr>
<tr>
<td align="left">H28</td>
<td align="left">Cataract and other disorders of lens in diseases classified elsewhere</td>
</tr>
<tr>
<td align="left">Q12.0</td>
<td align="left">Congenital cataract</td>
</tr>
</tbody>
</table>
<h4>Secondary care procedures (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//secondary_care/OPCS_cataract.csv'>OPCS_cataract.csv</a>)</h4>
<table>
<thead>
<tr>
<th>OPCS-4 code</th>
<th>OPCS-4 Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left">C71.1</td>
<td align="left">Simple linear extraction of lens</td>
</tr>
<tr>
<td align="left">C71.2</td>
<td align="left">Phacoemulsification of lens</td>
</tr>
<tr>
<td align="left">C71.3</td>
<td align="left">Aspiration of lens</td>
</tr>
<tr>
<td align="left">C71.8</td>
<td align="left">Other specified extracapsular extraction of lens</td>
</tr>
<tr>
<td align="left">C71.9</td>
<td align="left">Unspecified extracapsular extraction of lens</td>
</tr>
<tr>
<td align="left">C72.1</td>
<td align="left">Forceps extraction of lens</td>
</tr>
<tr>
<td align="left">C72.2</td>
<td align="left">Suction extraction of lens</td>
</tr>
<tr>
<td align="left">C72.3</td>
<td align="left">Cryoextraction of lens</td>
</tr>
<tr>
<td align="left">C72.8</td>
<td align="left">Other specified intracapsular extraction of lens</td>
</tr>
<tr>
<td align="left">C72.9</td>
<td align="left">Unspecified intracapsular extraction of lens</td>
</tr>
<tr>
<td align="left">C73.1</td>
<td align="left">Membranectomy of lens</td>
</tr>
<tr>
<td align="left">C73.2</td>
<td align="left">Capsulotomy of anterior lens capsule</td>
</tr>
<tr>
<td align="left">C73.3</td>
<td align="left">Capsulotomy of posterior lens capsule</td>
</tr>
<tr>
<td align="left">C73.4</td>
<td align="left">Capsulotomy of lens NEC</td>
</tr>
<tr>
<td align="left">C73.8</td>
<td align="left">Other specified incision of capsule of lens</td>
</tr>
<tr>
<td align="left">C73.9</td>
<td align="left">Unspecified incision of capsule of lens</td>
</tr>
<tr>
<td align="left">C74.1</td>
<td align="left">Curettage of lens</td>
</tr>
<tr>
<td align="left">C74.2</td>
<td align="left">Discission of cataract</td>
</tr>
<tr>
<td align="left">C74.3</td>
<td align="left">Mechanical lensectomy</td>
</tr>
<tr>
<td align="left">C74.8</td>
<td align="left">Other specified other extraction of lens</td>
</tr>
<tr>
<td align="left">C74.9</td>
<td align="left">Unspecified other extraction of lens</td>
</tr>
<tr>
<td align="left">C75.1</td>
<td align="left">Insertion of prosthetic replacement for lens NEC</td>
</tr>
<tr>
<td align="left">C75.2</td>
<td align="left">Revision of prosthetic replacement for lens</td>
</tr>
<tr>
<td align="left">C75.3</td>
<td align="left">Removal of prosthetic replacement for lens</td>
</tr>
<tr>
<td align="left">C75.4</td>
<td align="left">Insertion of prosthetic replacement for lens using suture fixation</td>
</tr>
<tr>
<td align="left">C75.8</td>
<td align="left">Other specified prosthesis of lens</td>
</tr>
<tr>
<td align="left">C75.9</td>
<td align="left">Unspecified prosthesis of lens</td>
</tr>
<tr>
<td align="left">C77.1</td>
<td align="left">Capsulectomy</td>
</tr>
<tr>
<td align="left">C77.2</td>
<td align="left">Couching of lens</td>
</tr>
<tr>
<td align="left">C77.6</td>
<td align="left">Insertion of capsule tension ring</td>
</tr>
<tr>
<td align="left">C77.8</td>
<td align="left">Other specified other operations on lens</td>
</tr>
<tr>
<td align="left">C77.9</td>
<td align="left">Unspecified other operations on lens</td>
</tr>
</tbody>
</table>
<h2>Cerebral Palsy</h2>
<h4>Implementation</h4>
~~~
At the specified date, a patient is defined as having had 'Cerebral Palsy' IF they meet the criteria for any of the following on or before the specified date. The earliest date on which the individual meets any of the following criteria on or before the specified date is defined as the first event date:
Primary care
1. 'Cerebral Palsy' diagnosis or history of diagnosis during a consultation
OR
Secondary care
1. ALL diagnoses of 'Cerebral Palsy' or history of diagnosis during a hospitalization
~~~
<h4>Primary care (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//primary_care/CPRD_cerebral_palsy.csv'>CPRD_cerebral_palsy.csv</a>)</h4>
<table>
<thead>
<tr>
<th>Read code</th>
<th>Read Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left">38Gw.00</td>
<td align="left">Gross Motor Function Classification System Cerebral Palsy</td>
</tr>
<tr>
<td align="left">F137000</td>
<td align="left">Athetoid cerebral palsy</td>
</tr>
<tr>
<td align="left">F137011</td>
<td align="left">Vogt's disease</td>
</tr>
<tr>
<td align="left">F137100</td>
<td align="left">Double athetosis</td>
</tr>
<tr>
<td align="left">F137111</td>
<td align="left">Congenital athetosis</td>
</tr>
<tr>
<td align="left">F137.11</td>
<td align="left">Athetoid cerebral palsy</td>
</tr>
<tr>
<td align="left">F137.12</td>
<td align="left">Athetosis - congenital</td>
</tr>
<tr>
<td align="left">F230000</td>
<td align="left">Congenital paraplegia</td>
</tr>
<tr>
<td align="left">F230100</td>
<td align="left">Cerebral palsy with spastic diplegia</td>
</tr>
<tr>
<td align="left">F230111</td>
<td align="left">Spastic diplegic cerebral palsy</td>
</tr>
<tr>
<td align="left">F230.00</td>
<td align="left">Congenital diplegia</td>
</tr>
<tr>
<td align="left">F230.11</td>
<td align="left">Paraplegia - congenital</td>
</tr>
<tr>
<td align="left">F230z00</td>
<td align="left">Congenital diplegia NOS</td>
</tr>
<tr>
<td align="left">F231.00</td>
<td align="left">Congenital hemiplegia</td>
</tr>
<tr>
<td align="left">F232.00</td>
<td align="left">Congenital quadriplegia</td>
</tr>
<tr>
<td align="left">F232.11</td>
<td align="left">Tetraplegia - congenital</td>
</tr>
<tr>
<td align="left">F233.00</td>
<td align="left">Congenital monoplegia</td>
</tr>
<tr>
<td align="left">F233.11</td>
<td align="left">Congenital spastic foot</td>
</tr>
<tr>
<td align="left">F234.00</td>
<td align="left">Infantile hemiplegia NOS</td>
</tr>
<tr>
<td align="left">F23..00</td>
<td align="left">Congenital cerebral palsy</td>
</tr>
<tr>
<td align="left">F23..11</td>
<td align="left">Congenital spastic cerebral palsy</td>
</tr>
<tr>
<td align="left">F23..12</td>
<td align="left">Infantile cerebral palsy</td>
</tr>
<tr>
<td align="left">F23..13</td>
<td align="left">Littles disease</td>
</tr>
<tr>
<td align="left">F23..14</td>
<td align="left">Cerebral atonia</td>
</tr>
<tr>
<td align="left">F23y000</td>
<td align="left">Ataxic infantile cerebral palsy</td>
</tr>
<tr>
<td align="left">F23y100</td>
<td align="left">Flaccid infantile cerebral palsy</td>
</tr>
<tr>
<td align="left">F23y200</td>
<td align="left">Spastic cerebral palsy</td>
</tr>
<tr>
<td align="left">F23y300</td>
<td align="left">Dyskinetic cerebral palsy</td>
</tr>
<tr>
<td align="left">F23y400</td>
<td align="left">Ataxic diplegic cerebral palsy</td>
</tr>
<tr>
<td align="left">F23y500</td>
<td align="left">Worster-Drought syndrome</td>
</tr>
<tr>
<td align="left">F23y511</td>
<td align="left">Congenital suprabulbar paresis</td>
</tr>
<tr>
<td align="left">F23y600</td>
<td align="left">Choreoathetoid cerebral palsy</td>
</tr>
<tr>
<td align="left">F23y.00</td>
<td align="left">Other congenital cerebral palsy</td>
</tr>
<tr>
<td align="left">F23yz00</td>
<td align="left">Other infantile cerebral palsy NOS</td>
</tr>
<tr>
<td align="left">F23z.00</td>
<td align="left">Congenital cerebral palsy NOS</td>
</tr>
<tr>
<td align="left">F2B0.00</td>
<td align="left">Spastic quadriplegic cerebral palsy</td>
</tr>
<tr>
<td align="left">F2B1.00</td>
<td align="left">Spastic hemiplegic cerebral palsy</td>
</tr>
<tr>
<td align="left">F2B..00</td>
<td align="left">Cerebral palsy</td>
</tr>
<tr>
<td align="left">F2By.00</td>
<td align="left">Other cerebral palsy</td>
</tr>
<tr>
<td align="left">F2Bz.00</td>
<td align="left">Cerebral palsy NOS</td>
</tr>
<tr>
<td align="left">Fyu9000</td>
<td align="left">[X]Other infantile cerebral palsy</td>
</tr>
<tr>
<td align="left">Fyu9.00</td>
<td align="left">[X]Cerebral palsy and other paralytic syndromes</td>
</tr>
<tr>
<td align="left">G669.00</td>
<td align="left">Cerebral palsy, not congenital or infantile, acute</td>
</tr>
</tbody>
</table>
<h4>Secondary care diagnoses (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//secondary_care/ICD_cerebral_palsy.csv'>ICD_cerebral_palsy.csv</a>)</h4>
<table>
<thead>
<tr>
<th>ICD-10 code</th>
<th>ICD-10 Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left">G80</td>
<td align="left">Cerebral palsy</td>
</tr>
</tbody>
</table>
<h2>Cholangitis</h2>
<h4>Implementation</h4>
~~~
At the specified date, a patient is defined as having had 'Cholangitis' IF they meet the criteria for any of the following on or before the specified date. The earliest date on which the individual meets any of the following criteria on or before the specified date is defined as the first event date:
Primary care
1. 'Cholangitis' diagnosis or history of diagnosis or procedure during a consultation
OR
Secondary care
1. ALL diagnoses of 'Cholangitis' or history of diagnosis during a hospitalization
~~~
<h4>Primary care (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//primary_care/CPRD_cholangitis.csv'>CPRD_cholangitis.csv</a>)</h4>
<table>
<thead>
<tr>
<th>Read code</th>
<th>Read Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left">J620100</td>
<td align="left">Liver abscess due to cholangitis</td>
</tr>
<tr>
<td align="left">J646.00</td>
<td align="left">Calculus of bile duct with cholangitis</td>
</tr>
<tr>
<td align="left">J661000</td>
<td align="left">Acute cholangitis</td>
</tr>
<tr>
<td align="left">J661100</td>
<td align="left">Chronic cholangitis</td>
</tr>
<tr>
<td align="left">J661200</td>
<td align="left">Recurrent cholangitis</td>
</tr>
<tr>
<td align="left">J661300</td>
<td align="left">Suppurative cholangitis</td>
</tr>
<tr>
<td align="left">J661400</td>
<td align="left">Ascending cholangitis</td>
</tr>
<tr>
<td align="left">J661500</td>
<td align="left">Cholangitis lenta</td>
</tr>
<tr>
<td align="left">J661600</td>
<td align="left">Obliterative cholangitis</td>
</tr>
<tr>
<td align="left">J661700</td>
<td align="left">Primary sclerosing cholangitis</td>
</tr>
<tr>
<td align="left">J661800</td>
<td align="left">Secondary sclerosing cholangitis</td>
</tr>
<tr>
<td align="left">J661900</td>
<td align="left">Sclerosing cholangitis unspecified</td>
</tr>
<tr>
<td align="left">J661.00</td>
<td align="left">Cholangitis</td>
</tr>
<tr>
<td align="left">J661y00</td>
<td align="left">Other cholangitis</td>
</tr>
<tr>
<td align="left">J661z00</td>
<td align="left">Cholangitis NOS</td>
</tr>
</tbody>
</table>
<h4>Secondary care diagnoses (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//secondary_care/ICD_cholangitis.csv'>ICD_cholangitis.csv</a>)</h4>
<table>
<thead>
<tr>
<th>ICD-10 code</th>
<th>ICD-10 Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left">K80.3</td>
<td align="left">Calculus of bile duct with cholangitis</td>
</tr>
<tr>
<td align="left">K83.0</td>
<td align="left">Cholangitis</td>
</tr>
</tbody>
</table>
<h2>Cholecystitis</h2>
<h4>Implementation</h4>
~~~
At the specified date, a patient is defined as having had 'Cholecystitis' IF they meet the criteria for any of the following on or before the specified date. The earliest date on which the individual meets any of the following criteria on or before the specified date is defined as the first event date:
Primary care
1. 'Cholecystitis' diagnosis or history of diagnosis or procedure during a consultation
OR
Secondary care
1. ALL diagnoses of 'Cholecystitis' or history of diagnosis during a hospitalization
~~~
<h4>Primary care (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//primary_care/CPRD_cholecystitis.csv'>CPRD_cholecystitis.csv</a>)</h4>
<table>
<thead>
<tr>
<th>Read code</th>
<th>Read Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left">J643000</td>
<td align="left">Bile duct calculus + acute cholecystitis and no obstruction</td>
</tr>
<tr>
<td align="left">J643100</td>
<td align="left">Bile duct calculus + acute cholecystitis and obstruction</td>
</tr>
<tr>
<td align="left">J643.00</td>
<td align="left">Bile duct calculus with acute cholecystitis</td>
</tr>
<tr>
<td align="left">J643z00</td>
<td align="left">Bile duct calculus + acute cholecystitis - obstruct NOS</td>
</tr>
<tr>
<td align="left">J644000</td>
<td align="left">Bile duct calculus + other cholecystitis and no obstruction</td>
</tr>
<tr>
<td align="left">J644100</td>
<td align="left">Bile duct calculus + other cholecystitis and obstruction</td>
</tr>
<tr>
<td align="left">J644.00</td>
<td align="left">Bile duct calculus with other cholecystitis</td>
</tr>
<tr>
<td align="left">J644z00</td>
<td align="left">Bile duct calculus + other cholecystitis - obstruction NOS</td>
</tr>
<tr>
<td align="left">J650000</td>
<td align="left">Acute cholecystitis unspecified</td>
</tr>
<tr>
<td align="left">J650100</td>
<td align="left">Acute angiocholecystitis</td>
</tr>
<tr>
<td align="left">J650200</td>
<td align="left">Acute emphysematous cholecystitis</td>
</tr>
<tr>
<td align="left">J650300</td>
<td align="left">Acute suppurative cholecystitis</td>
</tr>
<tr>
<td align="left">J650400</td>
<td align="left">Acute gangrenous cholecystitis</td>
</tr>
<tr>
<td align="left">J650.00</td>
<td align="left">Acute cholecystitis</td>
</tr>
<tr>
<td align="left">J650.11</td>
<td align="left">Abscess of gallbladder</td>
</tr>
<tr>
<td align="left">J650.12</td>
<td align="left">Empyema of gallbladder</td>
</tr>
<tr>
<td align="left">J650z00</td>
<td align="left">Acute cholecystitis NOS</td>
</tr>
<tr>
<td align="left">J651000</td>
<td align="left">Chronic cholecystitis</td>
</tr>
<tr>
<td align="left">J651.00</td>
<td align="left">Other cholecystitis</td>
</tr>
<tr>
<td align="left">J651y00</td>
<td align="left">Other cholecystitis OS</td>
</tr>
<tr>
<td align="left">J651z00</td>
<td align="left">Cholecystitis NOS</td>
</tr>
<tr>
<td align="left">Jyu8100</td>
<td align="left">[X]Other cholecystitis</td>
</tr>
</tbody>
</table>
<h4>Secondary care diagnoses (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//secondary_care/ICD_cholecystitis.csv'>ICD_cholecystitis.csv</a>)</h4>
<table>
<thead>
<tr>
<th>ICD-10 code</th>
<th>ICD-10 Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left">K80.0</td>
<td align="left">Calculus of gallbladder with acute cholecystitis</td>
</tr>
<tr>
<td align="left">K80.1</td>
<td align="left">Calculus of gallbladder with other cholecystitis</td>
</tr>
<tr>
<td align="left">K80.4</td>
<td align="left">Calculus of bile duct with cholecystitis</td>
</tr>
<tr>
<td align="left">K81</td>
<td align="left">Cholecystitis</td>
</tr>
</tbody>
</table>
<h2>Cholelithiasis</h2>
<h4>Implementation</h4>
~~~
At the specified date, a patient is defined as having had 'Cholelithiasis' IF they meet the criteria for any of the following on or before the specified date. The earliest date on which the individual meets any of the following criteria on or before the specified date is defined as the first event date:
Primary care
1. 'Cholelithiasis' diagnosis or history of diagnosis or procedure during a consultation
OR
Secondary care
1. ALL diagnoses of 'Cholelithiasis' or history of diagnosis during a hospitalization
~~~
<h4>Primary care (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//primary_care/CPRD_cholelithiasis.csv'>CPRD_cholelithiasis.csv</a>)</h4>
<table>
<thead>
<tr>
<th>Read code</th>
<th>Read Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left">14CE.00</td>
<td align="left">H/O: gall stones</td>
</tr>
<tr>
<td align="left">1965.00</td>
<td align="left">Biliary colic</td>
</tr>
<tr>
<td align="left">1965.11</td>
<td align="left">Biliary colic symptom</td>
</tr>
<tr>
<td align="left">4775.00</td>
<td align="left">Faeces: gall stones present</td>
</tr>
<tr>
<td align="left">4G21.00</td>
<td align="left">O/E: cholesterol gall stone</td>
</tr>
<tr>
<td align="left">4G22.00</td>
<td align="left">O/E: pigment gall stone</td>
</tr>
<tr>
<td align="left">4G2..00</td>
<td align="left">O/E: gall stone</td>
</tr>
<tr>
<td align="left">4G2Z.00</td>
<td align="left">O/E: gall stone NOS</td>
</tr>
<tr>
<td align="left">7648700.0</td>
<td align="left">Enterotomy and removal of gallstone</td>
</tr>
<tr>
<td align="left">8CMWD00</td>
<td align="left">On gallstone care pathway</td>
</tr>
<tr>
<td align="left">J503000</td>
<td align="left">Gallstone ileus</td>
</tr>
<tr>
<td align="left">J640000</td>
<td align="left">Gallbladder calculus with acute cholecystitis +no obstruct</td>
</tr>
<tr>
<td align="left">J640100</td>
<td align="left">Gallbladder calculus with acute cholecystitis + obstruction</td>
</tr>
<tr>
<td align="left">J640.00</td>
<td align="left">Gallbladder calculus with acute cholecystitis</td>
</tr>
<tr>
<td align="left">J640z00</td>
<td align="left">Gallbladder calculus with acute cholecystitis - obst NOS</td>
</tr>
<tr>
<td align="left">J641000</td>
<td align="left">Gallbladder calculus with other cholecystitis +no obstruct</td>
</tr>
<tr>
<td align="left">J641100</td>
<td align="left">Gallbladder calculus with other cholecystitis + obstruct</td>
</tr>
<tr>
<td align="left">J641.00</td>
<td align="left">Gallbladder calculus with other cholecystitis</td>
</tr>
<tr>
<td align="left">J641z00</td>
<td align="left">Gallbladder calculus with other cholecystitis - obstruct NOS</td>
</tr>
<tr>
<td align="left">J642000</td>
<td align="left">Gallbladder calculus without mention cholecystitis +no obstr</td>
</tr>
<tr>
<td align="left">J642100</td>
<td align="left">Gallbladder calculus without mention cholecystitis + obstruc</td>
</tr>
<tr>
<td align="left">J642200</td>
<td align="left">Biliary colic</td>
</tr>
<tr>
<td align="left">J642.00</td>
<td align="left">Gallbladder calculus without mention of cholecystitis</td>
</tr>
<tr>
<td align="left">J642.11</td>
<td align="left">Gallbladder calculus without mention of cholecystitis</td>
</tr>
<tr>
<td align="left">J642z00</td>
<td align="left">Gallbladder calculus without cholecystitis and obstruct NOS</td>
</tr>
<tr>
<td align="left">J643000</td>
<td align="left">Bile duct calculus + acute cholecystitis and no obstruction</td>
</tr>
<tr>
<td align="left">J643100</td>
<td align="left">Bile duct calculus + acute cholecystitis and obstruction</td>
</tr>
<tr>
<td align="left">J643.00</td>
<td align="left">Bile duct calculus with acute cholecystitis</td>
</tr>
<tr>
<td align="left">J643z00</td>
<td align="left">Bile duct calculus + acute cholecystitis - obstruct NOS</td>
</tr>
<tr>
<td align="left">J644000</td>
<td align="left">Bile duct calculus + other cholecystitis and no obstruction</td>
</tr>
<tr>
<td align="left">J644100</td>
<td align="left">Bile duct calculus + other cholecystitis and obstruction</td>
</tr>
<tr>
<td align="left">J644.00</td>
<td align="left">Bile duct calculus with other cholecystitis</td>
</tr>
<tr>
<td align="left">J644z00</td>
<td align="left">Bile duct calculus + other cholecystitis - obstruction NOS</td>
</tr>
<tr>
<td align="left">J645000</td>
<td align="left">Bile duct calculus without cholecystitis, no obstruction</td>
</tr>
<tr>
<td align="left">J645100</td>
<td align="left">Bile duct calculus without cholecystitis with obstruction</td>
</tr>
<tr>
<td align="left">J645200</td>
<td align="left">Bile duct calculus NOS</td>
</tr>
<tr>
<td align="left">J645.00</td>
<td align="left">Bile duct calculus without mention of cholecystitis</td>
</tr>
<tr>
<td align="left">J645.11</td>
<td align="left">Choledocholithiasis</td>
</tr>
<tr>
<td align="left">J645z00</td>
<td align="left">Bile duct calculus without cholecystitis NOS</td>
</tr>
<tr>
<td align="left">J646.00</td>
<td align="left">Calculus of bile duct with cholangitis</td>
</tr>
<tr>
<td align="left">J64..00</td>
<td align="left">Cholelithiasis</td>
</tr>
<tr>
<td align="left">J64..11</td>
<td align="left">Bile duct calculus</td>
</tr>
<tr>
<td align="left">J64..12</td>
<td align="left">Calculus - biliary</td>
</tr>
<tr>
<td align="left">J64..13</td>
<td align="left">Cystic duct calculus</td>
</tr>
<tr>
<td align="left">J64..14</td>
<td align="left">Gallbladder calculus</td>
</tr>
<tr>
<td align="left">J64..15</td>
<td align="left">Gallstones</td>
</tr>
<tr>
<td align="left">J64..16</td>
<td align="left">Stone - biliary</td>
</tr>
<tr>
<td align="left">J64z000</td>
<td align="left">Cholelithiasis without obstruction NOS</td>
</tr>
<tr>
<td align="left">J64z100</td>
<td align="left">Cholelithiasis with obstruction NOS</td>
</tr>
<tr>
<td align="left">J64z.00</td>
<td align="left">Cholelithiasis NOS</td>
</tr>
<tr>
<td align="left">J64zz00</td>
<td align="left">Cholelithiasis NOS</td>
</tr>
<tr>
<td align="left">J670500</td>
<td align="left">Gallstone acute pancreatitis</td>
</tr>
<tr>
<td align="left">J671100</td>
<td align="left">Gallstone chronic pancreatitis</td>
</tr>
<tr>
<td align="left">Jyu8000</td>
<td align="left">[X]Other cholelithiasis</td>
</tr>
</tbody>
</table>
<h4>Secondary care diagnoses (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//secondary_care/ICD_cholelithiasis.csv'>ICD_cholelithiasis.csv</a>)</h4>
<table>
<thead>
<tr>
<th>ICD-10 code</th>
<th>ICD-10 Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left">K80</td>
<td align="left">Cholelithiasis</td>
</tr>
</tbody>
</table>
<h2>Chronic Kidney Disease</h2>
<h4>Implementation</h4>
~~~
Apply modified CALIBER 'Chronic Kidney Disease' algorithm in CPRD primary care data as follows:
A patient is defined as having had CKD stage 3 or above at a specified date:
IF egfr_ckdepi recorded on or before specified date, THEN
IF egfr_ckdepi <60 ml/min on the most recent date (index date) before the specified date
AND
IF egfr_ckdepi <60 ml/min on any date greater than 90 days BEFORE the index date above
THEN classify as having CKD3 or above
ELSE the patient is not defined as having CKD stage 3 or above.
Where egfr_ckdepi up to and including 31 Dec 2013 is defined as:
egfr_ckdepi = 141 * min(crea_gprd * 0.010746 / K, 1)^alpha
* max(crea_gprd * 0.010746 / K, 1)^-1.209
* 0.993^age * 1.018 [if female] * 1.159 [if black]
where:
alpha = -0.329 for females, -0.411 for males
K = 0.7 for females, 0.9 for males
Where egfr_ckdepi from and including 1 Jan 2014 is defined as:
egfr_ckdepi = 141 * min(crea_gprd * 0.011312 / K, 1)^alpha
* max(crea_gprd * 0.011312/ K, 1)^-1.209
* 0.993^age * 1.018 [if female] * 1.159 [if black]
where:
alpha = -0.329 for females, -0.411 for males
K = 0.7 for females, 0.9 for males
Where crea_gprd is defined as:
IF enttype = 165 [Serum creatinine]
AND data1 [Operator] = 3 ["="] AND data2 [Value] > 0
THEN crea_gprd = data2
~~~
<h2>Chronic sinusitis</h2>
<h4>Implementation</h4>
~~~
At the specified date, a patient is defined as having had 'Chronic sinusitis' IF they meet the criteria for any of the following on or before the specified date. The earliest date on which the individual meets any of the following criteria on or before the specified date is defined as the first event date:
Primary care
1. 'Chronic sinusitis' diagnosis or history of diagnosis during a consultation
OR
2. There are at least 2 records satisfying the criteria for Possible diagnosis of 'Chronic sinusitis' during a consultation more than 84 days apart.
Secondary care (ICD10)
1. ALL diagnoses of 'Chronic sinusitis' or history of diagnosis during a hospitalization
~~~
<h4>Primary care (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//primary_care/CPRD_sinusitis.csv'>CPRD_sinusitis.csv</a>)</h4>
<table>
<thead>
<tr>
<th>Read code</th>
<th>Read Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left">H01..11</td>
<td align="left">Sinusitis</td>
</tr>
<tr>
<td align="left">H130.00</td>
<td align="left">Chronic maxillary sinusitis</td>
</tr>
<tr>
<td align="left">H130.11</td>
<td align="left">Antritis - chronic</td>
</tr>
<tr>
<td align="left">H130.12</td>
<td align="left">Maxillary sinusitis</td>
</tr>
<tr>
<td align="left">H131.00</td>
<td align="left">Chronic frontal sinusitis</td>
</tr>
<tr>
<td align="left">H131.11</td>
<td align="left">Frontal sinusitis</td>
</tr>
<tr>
<td align="left">H132.00</td>
<td align="left">Chronic ethmoidal sinusitis</td>
</tr>
<tr>
<td align="left">H133.00</td>
<td align="left">Chronic sphenoidal sinusitis</td>
</tr>
<tr>
<td align="left">H135.00</td>
<td align="left">Recurrent sinusitis</td>
</tr>
<tr>
<td align="left">H13..00</td>
<td align="left">Chronic sinusitis</td>
</tr>
<tr>
<td align="left">H13..11</td>
<td align="left">Chronic rhinosinusitis</td>
</tr>
<tr>
<td align="left">H13y000</td>
<td align="left">Chronic pansinusitis</td>
</tr>
<tr>
<td align="left">H13y100</td>
<td align="left">Pansinusitis</td>
</tr>
<tr>
<td align="left">H13y.00</td>
<td align="left">Other chronic sinusitis</td>
</tr>
<tr>
<td align="left">H13yz00</td>
<td align="left">Other chronic sinusitis NOS</td>
</tr>
<tr>
<td align="left">H13z.00</td>
<td align="left">Chronic sinusitis NOS</td>
</tr>
<tr>
<td align="left">H17..12</td>
<td align="left">Allergic rhinosinusitis</td>
</tr>
<tr>
<td align="left">Hyu2200</td>
<td align="left">[X]Other chronic sinusitis</td>
</tr>
</tbody>
</table>
<h4>Secondary care diagnoses (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//secondary_care/ICD_sinusitis.csv'>ICD_sinusitis.csv</a>)</h4>
<table>
<thead>
<tr>
<th>ICD-10 code</th>
<th>ICD-10 Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left">J32</td>
<td align="left">Chronic sinusitis</td>
</tr>
</tbody>
</table>
<h2>Chronic viral hepatitis</h2>
<h4>Implementation</h4>
~~~
At the specified date, a patient is defined as having had 'Chronic viral hepatitis' IF they meet the criteria for any of the following on or before the specified date. The earliest date on which the individual meets any of the following criteria on or before the specified date is defined as the first event date:
Primary care
1. 'Chronic viral hepatitis' diagnosis or history of diagnosis during a consultation
OR
Secondary care
1. ALL diagnoses of 'Chronic viral hepatitis' or history of diagnosis during a hospitalization
~~~
<h4>Primary care (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//primary_care/CPRD_chr_hep.csv'>CPRD_chr_hep.csv</a>)</h4>
<table>
<thead>
<tr>
<th>Read code</th>
<th>Read Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left">141E.00</td>
<td align="left">History of hepatitis B</td>
</tr>
<tr>
<td align="left">14i..00</td>
<td align="left">H/O hepatitis C antiviral drug therapy</td>
</tr>
<tr>
<td align="left">2126700.0</td>
<td align="left">Hepatitis C resolved</td>
</tr>
<tr>
<td align="left">43B4.00</td>
<td align="left">Hepatitis B surface antig +ve</td>
</tr>
<tr>
<td align="left">43B5.00</td>
<td align="left">Hepatitis e antigen present</td>
</tr>
<tr>
<td align="left">43j5.00</td>
<td align="left">Hepatitis C nucleic acid detection</td>
</tr>
<tr>
<td align="left">43jG.00</td>
<td align="left">Hepatitis B nucleic acid detection</td>
</tr>
<tr>
<td align="left">43X3.00</td>
<td align="left">Hepatitis C antibody test positive</td>
</tr>
<tr>
<td align="left">4J3B.00</td>
<td align="left">Hepatitis C viral load</td>
</tr>
<tr>
<td align="left">4J3D.00</td>
<td align="left">Hepatitis B viral load</td>
</tr>
<tr>
<td align="left">4JQ3.00</td>
<td align="left">Hepatitis C virus genotype</td>
</tr>
<tr>
<td align="left">4JQD.00</td>
<td align="left">Hepatitis C viral ribonucleic acid PCR positive</td>
</tr>
<tr>
<td align="left">4JQD.11</td>
<td align="left">Hepatitis C PCR positive</td>
</tr>
<tr>
<td align="left">4JQF.00</td>
<td align="left">Hepatitis C antigen positive</td>
</tr>
<tr>
<td align="left">7Q05200</td>
<td align="left">Hepatitis B treatment drugs Band 1</td>
</tr>
<tr>
<td align="left">8BB5.00</td>
<td align="left">12 week virologic response to hepatitis C treatment</td>
</tr>
<tr>
<td align="left">9kR..00</td>
<td align="left">Chronic hepatitis annual review - enhanced services admin</td>
</tr>
<tr>
<td align="left">9kV..00</td>
<td align="left">Hepatitis C screening positive - enhanced services admin</td>
</tr>
<tr>
<td align="left">9kV..11</td>
<td align="left">Hepatitis C screening positive</td>
</tr>
<tr>
<td align="left">9kX..00</td>
<td align="left">Hepatitis status 6 months post treatment - enhanced serv adm</td>
</tr>
<tr>
<td align="left">9kZ..00</td>
<td align="left">Hepatitis B screening positive - enhanced services admin</td>
</tr>
<tr>
<td align="left">9kZ..11</td>
<td align="left">Hepatitis B screening positive</td>
</tr>
<tr>
<td align="left">9NgR.00</td>
<td align="left">On hepatitis C treatment plan</td>
</tr>
<tr>
<td align="left">A703.00</td>
<td align="left">Viral (serum) hepatitis B</td>
</tr>
<tr>
<td align="left">A705000</td>
<td align="left">Viral hepatitis C without mention of hepatic coma</td>
</tr>
<tr>
<td align="left">A705100</td>
<td align="left">Acute delta-(super)infection of hepatitis B carrier</td>
</tr>
<tr>
<td align="left">A707000</td>
<td align="left">Chronic viral hepatitis B with delta-agent</td>
</tr>
<tr>
<td align="left">A707100</td>
<td align="left">Chronic viral hepatitis B without delta-agent</td>
</tr>
<tr>
<td align="left">A707200</td>
<td align="left">Chronic viral hepatitis C</td>
</tr>
<tr>
<td align="left">A707300</td>
<td align="left">Chronic viral hepatitis B</td>
</tr>
<tr>
<td align="left">A707.00</td>
<td align="left">Chronic viral hepatitis</td>
</tr>
<tr>
<td align="left">A707X00</td>
<td align="left">Chronic viral hepatitis, unspecified</td>
</tr>
<tr>
<td align="left">A70A.00</td>
<td align="left">Hepatitis C genotype 1</td>
</tr>
<tr>
<td align="left">A70B.00</td>
<td align="left">Hepatitis C genotype 2</td>
</tr>
<tr>
<td align="left">A70C.00</td>
<td align="left">Hepatitis C genotype 3</td>
</tr>
<tr>
<td align="left">A70D.00</td>
<td align="left">Hepatitis C genotype 4</td>
</tr>
<tr>
<td align="left">A70z000</td>
<td align="left">Hepatitis C</td>
</tr>
<tr>
<td align="left">AyuB100</td>
<td align="left">[X]Other chronic viral hepatitis</td>
</tr>
<tr>
<td align="left">AyuB200</td>
<td align="left">[X]Chronic viral hepatitis, unspecified</td>
</tr>
<tr>
<td align="left">Q409100</td>
<td align="left">Congenital hepatitis B infection</td>
</tr>
</tbody>
</table>
<h4>Secondary care diagnoses (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//secondary_care/ICD_chr_hep.csv'>ICD_chr_hep.csv</a>)</h4>
<table>
<thead>
<tr>
<th>ICD-10 code</th>
<th>ICD-10 Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left">B18</td>
<td align="left">Chronic viral hepatitis</td>
</tr>
</tbody>
</table>
<h2>Coeliac disease</h2>
<h4>Implementation</h4>
~~~
At the specified date, a patient is defined as having had 'Coeliac disease' IF they meet the criteria for any of the following on or before the specified date. The earliest date on which the individual meets any of the following criteria on or before the specified date is defined as the first event date:
Primary care
1. 'Coeliac disease' diagnosis or history of diagnosis or procedure during a consultation
OR
Secondary care
1. ALL diagnoses of 'Coeliac disease' or history of diagnosis during a hospitalization
~~~
<h4>Primary care (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//primary_care/CPRD_coeliac.csv'>CPRD_coeliac.csv</a>)</h4>
<table>
<thead>
<tr>
<th>Read code</th>
<th>Read Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="right">6648000</td>
<td align="left">Coeliac disease annual review</td>
</tr>
<tr>
<td align="right">6648</td>
<td align="left">Coeliac disease monitoring</td>
</tr>
<tr>
<td align="left">8IAp.00</td>
<td align="left">Coeliac disease annual review declined</td>
</tr>
<tr>
<td align="left">9mB1.00</td>
<td align="left">Coeliac disease monitoring invitation first letter</td>
</tr>
<tr>
<td align="left">9mB..00</td>
<td align="left">Coeliac disease monitoring invitation</td>
</tr>
<tr>
<td align="left">J690000</td>
<td align="left">Congenital coeliac disease</td>
</tr>
<tr>
<td align="left">J690100</td>
<td align="left">Acquired coeliac disease</td>
</tr>
<tr>
<td align="left">J690.00</td>
<td align="left">Coeliac disease</td>
</tr>
<tr>
<td align="left">J690.11</td>
<td align="left">Coeliac rickets</td>
</tr>
<tr>
<td align="left">J690.12</td>
<td align="left">Gee - Herter disease</td>
</tr>
<tr>
<td align="left">J690.13</td>
<td align="left">Gluten enteropathy</td>
</tr>
<tr>
<td align="left">J690.14</td>
<td align="left">Sprue - nontropical</td>
</tr>
<tr>
<td align="left">J690.15</td>
<td align="left">Steatorrhea - idiopathic</td>
</tr>
<tr>
<td align="left">J690z00</td>
<td align="left">Coeliac disease NOS</td>
</tr>
<tr>
<td align="left">ZC2C200</td>
<td align="left">Dietary advice for coeliac disease</td>
</tr>
</tbody>
</table>
<h4>Secondary care diagnoses (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//secondary_care/ICD_coeliac.csv'>ICD_coeliac.csv</a>)</h4>
<table>
<thead>
<tr>
<th>ICD-10 code</th>
<th>ICD-10 Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left">K90.0</td>
<td align="left">Coeliac disease</td>
</tr>
</tbody>
</table>
<h2>Collapsed vertebra</h2>
<h4>Implementation</h4>
~~~
At the specified date, a patient is defined as having had 'Collapsed vertebra' IF they meet the criteria for any of the following on or before the specified date. The earliest date on which the individual meets any of the following criteria on or before the specified date is defined as the first event date:
Primary care
1. 'Collapsed vertebra' diagnosis or history of diagnosis or procedure during a consultation
OR
Secondary care (ICD10)
1. ALL diagnoses of 'Collapsed vertebra' or history of diagnosis during a hospitalization
OR
Secondary care (OPCS4)
1. ALL procedures for 'Collapsed vertebra' during a hospitalization
~~~
<h4>Primary care (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//primary_care/CPRD_collapsed_vert.csv'>CPRD_collapsed_vert.csv</a>)</h4>
<table>
<thead>
<tr>
<th>Read code</th>
<th>Read Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left">7J41300</td>
<td align="left">Vertebroplasty of fracture of spine</td>
</tr>
<tr>
<td align="left">7J41500</td>
<td align="left">Balloon kyphoplasty of fracture of spine</td>
</tr>
<tr>
<td align="left">7J48M00</td>
<td align="left">Vertebroplasty</td>
</tr>
<tr>
<td align="left">N331000</td>
<td align="left">Pathological fracture of thoracic vertebra</td>
</tr>
<tr>
<td align="left">N331011</td>
<td align="left">Collapse of thoracic vertebra</td>
</tr>
<tr>
<td align="left">N331100</td>
<td align="left">Pathological fracture of lumbar vertebra</td>
</tr>
<tr>
<td align="left">N331111</td>
<td align="left">Collapse of lumbar vertebra</td>
</tr>
<tr>
<td align="left">N331800</td>
<td align="left">Osteoporosis + pathological fracture lumbar vertebrae</td>
</tr>
<tr>
<td align="left">N331900</td>
<td align="left">Osteoporosis + pathological fracture thoracic vertebrae</td>
</tr>
<tr>
<td align="left">N331A00</td>
<td align="left">Osteoporosis + pathological fracture cervical vertebrae</td>
</tr>
<tr>
<td align="left">N331C00</td>
<td align="left">Pathological fracture of cervical vertebra</td>
</tr>
<tr>
<td align="left">N331D00</td>
<td align="left">Collapsed vertebra NOS</td>
</tr>
<tr>
<td align="left">N331E00</td>
<td align="left">Collapse of cervical vertebra</td>
</tr>
<tr>
<td align="left">N331F00</td>
<td align="left">Collapse of thoracic vertebra</td>
</tr>
<tr>
<td align="left">N331G00</td>
<td align="left">Collapse of lumbar vertebra</td>
</tr>
<tr>
<td align="left">N331H00</td>
<td align="left">Collapse of cervical vertebra due to osteoporosis</td>
</tr>
<tr>
<td align="left">N331J00</td>
<td align="left">Collapse of lumbar vertebra due to osteoporosis</td>
</tr>
<tr>
<td align="left">N331K00</td>
<td align="left">Collapse of thoracic vertebra due to osteoporosis</td>
</tr>
<tr>
<td align="left">N331L00</td>
<td align="left">Collapse of vertebra due to osteoporosis NOS</td>
</tr>
<tr>
<td align="left">N331.11</td>
<td align="left">Collapse of spine NOS</td>
</tr>
<tr>
<td align="left">N331.12</td>
<td align="left">Collapse of vertebra NOS</td>
</tr>
<tr>
<td align="left">N331.14</td>
<td align="left">Osteoporotic vertebral collapse</td>
</tr>
<tr>
<td align="left">Nyu6700</td>
<td align="left">[X]Collapsed vertebra in diseases classified elsewhere</td>
</tr>
<tr>
<td align="left">S100H00</td>
<td align="left">Closed fracture cervical vertebra, wedge</td>
</tr>
<tr>
<td align="left">S102100</td>
<td align="left">Closed fracture thoracic vertebra, wedge</td>
</tr>
<tr>
<td align="left">S104100</td>
<td align="left">Closed fracture lumbar vertebra, wedge</td>
</tr>
<tr>
<td align="left">S106000</td>
<td align="left">Closed compression fracture sacrum</td>
</tr>
</tbody>
</table>
<h4>Secondary care diagnoses (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//secondary_care/ICD_collapsed_vert.csv'>ICD_collapsed_vert.csv</a>)</h4>
<table>
<thead>
<tr>
<th>ICD-10 code</th>
<th>ICD-10 Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left">M48.5</td>
<td align="left">Collapsed vertebra, not elsewhere classified</td>
</tr>
<tr>
<td align="left">M49.5</td>
<td align="left">Collapsed vertebra in diseases classified elsewhere</td>
</tr>
</tbody>
</table>
<h4>Secondary care procedures (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//secondary_care/OPCS_collapsed_vert.csv'>OPCS_collapsed_vert.csv</a>)</h4>
<table>
<thead>
<tr>
<th>OPCS-4 code</th>
<th>OPCS-4 Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left">V44</td>
<td align="left">Decompression of fracture of spine</td>
</tr>
<tr>
<td align="left">V44.1</td>
<td align="left">Complex decompression of fracture of spine</td>
</tr>
<tr>
<td align="left">V44.2</td>
<td align="left">Anterior decompression of fracture of spine</td>
</tr>
<tr>
<td align="left">V44.3</td>
<td align="left">Posterior decompression of fracture of spine NEC</td>
</tr>
<tr>
<td align="left">V44.4</td>
<td align="left">Vertebroplasty of fracture of spine</td>
</tr>
<tr>
<td align="left">V44.5</td>
<td align="left">Balloon kyphoplasty of fracture of spine</td>
</tr>
<tr>
<td align="left">V44.8</td>
<td align="left">Other specified decompression of fracture of spine</td>
</tr>
<tr>
<td align="left">V44.9</td>
<td align="left">Unspecified decompression of fracture of spine</td>
</tr>
</tbody>
</table>
<h2>Congenital malformations of cardiac septa</h2>
<h4>Implementation</h4>
~~~
At the specified date, a patient is defined as having had Congenital malformations of cardiac septa IF they meet the criteria for any of the following on or before the specified date. The earliest date on which the individual meets any of the following criteria on or before the specified date is defined as the first event date:
Primary care
1. Congenital malformations of cardiac septa diagnosis or history of diagnosis or procedure during a consultation
OR
Secondary care (ICD10)
1. ALL diagnoses of Congenital malformations of cardiac septa or history of diagnosis during a hospitalization
OR
Secondary care (OPCS4)
1. ALL procedures for Congenital malformations of cardiac septa during a hospitalization
~~~
<h4>Primary care (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//primary_care/CPRD_congenital_septal.csv'>CPRD_congenital_septal.csv</a>)</h4>
<table>
<thead>
<tr>
<th>Read code</th>
<th>Read Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left">14AV.00</td>
<td align="left">History of ventricular septal defect</td>
</tr>
<tr>
<td align="left">2126800.0</td>
<td align="left">Ostium secundum atrial septal defect resolved</td>
</tr>
<tr>
<td align="left">24M..00</td>
<td align="left">Spontaneous closure of ventricular septal defect</td>
</tr>
<tr>
<td align="left">7902000.0</td>
<td align="left">Correct Fallot tetralogy- valved right ventr outflow conduit</td>
</tr>
<tr>
<td align="left">7902100.0</td>
<td align="left">Correct Fallot tetralogy- right ventric outflow conduit NEC</td>
</tr>
<tr>
<td align="left">7902200.0</td>
<td align="left">Correct Fallot tetralogy- right ventricular outflow patch</td>
</tr>
<tr>
<td align="left">7902300.0</td>
<td align="left">Revision of correction of tetralogy of Fallot</td>
</tr>
<tr>
<td align="left">7902400.0</td>
<td align="left">Repair of tetralogy of Fallot using transannular patch</td>
</tr>
<tr>
<td align="left">7902500.0</td>
<td align="left">Repair of tetralogy of Fallot with absent pulmonary valve</td>
</tr>
<tr>
<td align="left">7902600.0</td>
<td align="left">Repair Fallot-type pulmonary atresia aortopulmonary collater</td>
</tr>
<tr>
<td align="left">7902.00</td>
<td align="left">Correction of tetralogy of Fallot</td>
</tr>
<tr>
<td align="left">7902.11</td>
<td align="left">Repair of tetralogy of Fallot</td>
</tr>
<tr>
<td align="left">7902y00</td>
<td align="left">Other specified correction of tetralogy of Fallot</td>
</tr>
<tr>
<td align="left">7902z00</td>
<td align="left">Correction of tetralogy of Fallot NOS</td>
</tr>
<tr>
<td align="left">7902z11</td>
<td align="left">Repair of tetralogy of Fallot NOS</td>
</tr>
<tr>
<td align="left">7906300.0</td>
<td align="left">Closure of persistent ostium primum</td>
</tr>
<tr>
<td align="left">7906311.0</td>
<td align="left">Repair of persistent ostium primum</td>
</tr>
<tr>
<td align="left">7908500.0</td>
<td align="left">Closure of multiple interventricular septal defects</td>
</tr>
<tr>
<td align="left">7908511.0</td>
<td align="left">Repair of multiple interventricular septal defects</td>
</tr>
<tr>
<td align="left">7908600.0</td>
<td align="left">Closure interventricular septal defect us intraop trans pros</td>
</tr>
<tr>
<td align="left">7908611.0</td>
<td align="left">Repair interventricular septal defect us intraop trans pros</td>
</tr>
<tr>
<td align="left">790K100</td>
<td align="left">Repair of Fallot-type double outlet right ventricle</td>
</tr>
<tr>
<td align="left">P500.00</td>
<td align="left">Absent septum between aorta and pulmonary artery</td>
</tr>
<tr>
<td align="left">P511300</td>
<td align="left">Taussig-Bing syndrome</td>
</tr>
<tr>
<td align="left">P520.00</td>
<td align="left">Tetralogy of Fallot, unspecified</td>
</tr>
<tr>
<td align="left">P520.11</td>
<td align="left">Ventricular septal defect in Fallot's tetralogy</td>
</tr>
<tr>
<td align="left">P520.12</td>
<td align="left">Dextraposition of aorta in Fallot's tetralogy</td>
</tr>
<tr>
<td align="left">P521.00</td>
<td align="left">Pentalogy of Fallot</td>
</tr>
<tr>
<td align="left">P52..00</td>
<td align="left">Tetralogy of Fallot</td>
</tr>
<tr>
<td align="left">P52z.00</td>
<td align="left">Tetralogy of Fallot NOS</td>
</tr>
<tr>
<td align="left">P53..00</td>
<td align="left">Common ventricle</td>
</tr>
<tr>
<td align="left">P540.00</td>
<td align="left">Ventricular septal defect, unspecified</td>
</tr>
<tr>
<td align="left">P541.00</td>
<td align="left">Interventricular septal defect</td>
</tr>
<tr>
<td align="left">P542.00</td>
<td align="left">Left ventricle to right atrial communication</td>
</tr>
<tr>
<td align="left">P543.00</td>
<td align="left">Eisenmenger's complex</td>
</tr>
<tr>
<td align="left">P544.00</td>
<td align="left">Gerbode's defect</td>
</tr>
<tr>
<td align="left">P545.00</td>
<td align="left">Roger's disease</td>
</tr>
<tr>
<td align="left">P54..00</td>
<td align="left">Ventricular septal defect</td>
</tr>
<tr>
<td align="left">P54y.00</td>
<td align="left">Other specified ventricular septal defect</td>
</tr>
<tr>
<td align="left">P54z.00</td>
<td align="left">Ventricular septal defect NOS</td>
</tr>
<tr>
<td align="left">P550.00</td>
<td align="left">Atrial septal defect NOS</td>
</tr>
<tr>
<td align="left">P550.11</td>
<td align="left">Auricular septal defect NOS</td>
</tr>
<tr>
<td align="left">P550.12</td>
<td align="left">Interatrial septal defect NEC</td>
</tr>
<tr>
<td align="left">P550.13</td>
<td align="left">Interauricular septal defect</td>
</tr>
<tr>
<td align="left">P551.00</td>
<td align="left">Patent foramen ovale</td>
</tr>
<tr>
<td align="left">P552.00</td>
<td align="left">Persistent ostium secundum</td>
</tr>
<tr>
<td align="left">P552.11</td>
<td align="left">Patent ostium secundum</td>
</tr>
<tr>
<td align="left">P553.00</td>
<td align="left">Lutembacher's syndrome</td>
</tr>
<tr>
<td align="left">P55..00</td>
<td align="left">Ostium secundum atrial septal defect</td>
</tr>
<tr>
<td align="left">P55y.00</td>
<td align="left">Other specified ostium secundum atrial septal defect</td>
</tr>
<tr>
<td align="left">P55y.11</td>
<td align="left">Other specified atrial septal defect</td>
</tr>
<tr>
<td align="left">P55z.00</td>
<td align="left">Ostium secundum atrial septal defect NOS</td>
</tr>
<tr>
<td align="left">P561.00</td>
<td align="left">Ostium primum defect</td>
</tr>
<tr>
<td align="left">P561.11</td>
<td align="left">Persistent ostium primum</td>
</tr>
<tr>
<td align="left">P56..00</td>
<td align="left">Endocardial cushion defects</td>
</tr>
<tr>
<td align="left">P56y.00</td>
<td align="left">Other specified endocardial cushion defects</td>
</tr>
<tr>
<td align="left">P56z000</td>
<td align="left">Common atrium</td>
</tr>
<tr>
<td align="left">P56z011</td>
<td align="left">Cor triloculare biventriculare</td>
</tr>
<tr>
<td align="left">P56z100</td>
<td align="left">Common atrioventricular canal</td>
</tr>
<tr>
<td align="left">P56z200</td>
<td align="left">Common atrioventricular-type ventricular septal defect</td>
</tr>
<tr>
<td align="left">P56z.00</td>
<td align="left">Endocardial cushion defects NOS</td>
</tr>
<tr>
<td align="left">P56zz00</td>
<td align="left">Endocardial cushion defects NOS</td>
</tr>
<tr>
<td align="left">P5y..00</td>
<td align="left">Other heart bulb and septal closure defect</td>
</tr>
<tr>
<td align="left">P5z..00</td>
<td align="left">Heart bulb or septal closure defects NOS</td>
</tr>
<tr>
<td align="left">P60z100</td>
<td align="left">Fallot's trilogy</td>
</tr>
</tbody>
</table>
<h4>Secondary care diagnoses (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//secondary_care/ICD_congenital_septal.csv'>ICD_congenital_septal.csv</a>)</h4>
<table>
<thead>
<tr>
<th>ICD-10 code</th>
<th>ICD-10 Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left">Q21</td>
<td align="left">Congenital malformations of cardiac septa</td>
</tr>
</tbody>
</table>
<h4>Secondary care procedures (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//secondary_care/OPCS_congenital_septal.csv'>OPCS_congenital_septal.csv</a>)</h4>
<table>
<thead>
<tr>
<th>OPCS-4 code</th>
<th>OPCS-4 Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left">K04</td>
<td align="left">Repair of tetralogy of Fallot</td>
</tr>
<tr>
<td align="left">K04.1</td>
<td align="left">Repair of tetralogy of Fallot using valved right ventricular outflow conduit</td>
</tr>
<tr>
<td align="left">K04.2</td>
<td align="left">Repair of tetralogy of Fallot using right ventricular outflow conduit NEC</td>
</tr>
<tr>
<td align="left">K04.3</td>
<td align="left">Repair of tetralogy of Fallot using transannular patch</td>
</tr>
<tr>
<td align="left">K04.4</td>
<td align="left">Revision of repair of tetralogy of Fallot</td>
</tr>
<tr>
<td align="left">K04.5</td>
<td align="left">Repair of tetralogy of Fallot with absent pulmonary valve</td>
</tr>
<tr>
<td align="left">K04.6</td>
<td align="left">Repair of Fallot-type pulmonary atresia with aortopulmonary collaterals</td>
</tr>
<tr>
<td align="left">K04.8</td>
<td align="left">Other specified repair of tetralogy of Fallot</td>
</tr>
<tr>
<td align="left">K04.9</td>
<td align="left">Unspecified repair of tetralogy of Fallot</td>
</tr>
<tr>
<td align="left">K09</td>
<td align="left">Repair of defect of atrioventricular septum</td>
</tr>
<tr>
<td align="left">K09.1</td>
<td align="left">Repair of defect of atrioventricular septum using dual prosthetic patches</td>
</tr>
<tr>
<td align="left">K09.2</td>
<td align="left">Repair of defect of atrioventricular septum using prosthetic patch NEC</td>
</tr>
<tr>
<td align="left">K09.3</td>
<td align="left">Repair of defect of atrioventricular septum using tissue graft</td>
</tr>
<tr>
<td align="left">K09.4</td>
<td align="left">Repair of persistent ostium primum</td>
</tr>
<tr>
<td align="left">K09.5</td>
<td align="left">Primary repair of defect of atrioventricular septum NEC</td>
</tr>
<tr>
<td align="left">K09.6</td>
<td align="left">Revision of repair of defect of atrioventricular septum</td>
</tr>
<tr>
<td align="left">K09.8</td>
<td align="left">Other specified repair of defect of atrioventricular septum</td>
</tr>
<tr>
<td align="left">K09.9</td>
<td align="left">Unspecified repair of defect of atrioventricular septum</td>
</tr>
<tr>
<td align="left">K10</td>
<td align="left">Repair of defect of interatrial septum</td>
</tr>
<tr>
<td align="left">K10.1</td>
<td align="left">Repair of defect of interatrial septum using prosthetic patch</td>
</tr>
<tr>
<td align="left">K10.2</td>
<td align="left">Repair of defect of interatrial septum using pericardial patch</td>
</tr>
<tr>
<td align="left">K10.3</td>
<td align="left">Repair of defect of interatrial septum using tissue graft NEC</td>
</tr>
<tr>
<td align="left">K10.4</td>
<td align="left">Primary repair of defect of interatrial septum NEC</td>
</tr>
<tr>
<td align="left">K10.5</td>
<td align="left">Revision of repair of defect of interatrial septum</td>
</tr>
<tr>
<td align="left">K10.8</td>
<td align="left">Other specified repair of defect of interatrial septum</td>
</tr>
<tr>
<td align="left">K10.9</td>
<td align="left">Unspecified repair of defect of interatrial septum</td>
</tr>
<tr>
<td align="left">K11</td>
<td align="left">Repair of defect of interventricular septum</td>
</tr>
<tr>
<td align="left">K11.1</td>
<td align="left">Repair of defect of interventricular septum using prosthetic patch</td>
</tr>
<tr>
<td align="left">K11.2</td>
<td align="left">Repair of defect of interventricular septum using pericardial patch</td>
</tr>
<tr>
<td align="left">K11.3</td>
<td align="left">Repair of defect of interventricular septum using tissue graft NEC</td>
</tr>
<tr>
<td align="left">K11.4</td>
<td align="left">Primary repair of defect of interventricular septum NEC</td>
</tr>
<tr>
<td align="left">K11.5</td>
<td align="left">Revision of repair of defect of interventricular septum</td>
</tr>
<tr>
<td align="left">K11.6</td>
<td align="left">Repair of multiple interventricular septal defects</td>
</tr>
<tr>
<td align="left">K11.7</td>
<td align="left">Repair of interventricular septal defect using intraoperative transluminal prosthesis</td>
</tr>
<tr>
<td align="left">K11.8</td>
<td align="left">Other specified repair of defect of interventricular septum</td>
</tr>
<tr>
<td align="left">K11.9</td>
<td align="left">Unspecified repair of defect of interventricular septum</td>
</tr>
<tr>
<td align="left">K12</td>
<td align="left">Repair of defect of unspecified septum of heart</td>
</tr>
<tr>
<td align="left">K12.1</td>
<td align="left">Repair of defect of septum of heart using prosthetic patch NEC</td>
</tr>
<tr>
<td align="left">K12.2</td>
<td align="left">Repair of defect of septum of heart using pericardial patch NEC</td>
</tr>
<tr>
<td align="left">K12.3</td>
<td align="left">Repair of defect of septum of heart using tissue graft NEC</td>
</tr>
<tr>
<td align="left">K12.4</td>
<td align="left">Primary repair of defect of septum of heart NEC</td>
</tr>
<tr>
<td align="left">K12.5</td>
<td align="left">Revision of repair of septum of heart NEC</td>
</tr>
<tr>
<td align="left">K12.8</td>
<td align="left">Other specified repair of defect of unspecified septum of heart</td>
</tr>
<tr>
<td align="left">K12.9</td>
<td align="left">Unspecified repair of defect of unspecified septum of heart</td>
</tr>
<tr>
<td align="left">K13</td>
<td align="left">Transluminal repair of defect of septum</td>
</tr>
<tr>
<td align="left">K13.1</td>
<td align="left">Percutaneous transluminal repair of defect of interventricular septum using prosthesis</td>
</tr>
<tr>
<td align="left">K13.2</td>
<td align="left">Percutaneous transluminal repair of defect of interventricular septum NEC</td>
</tr>
<tr>
<td align="left">K13.3</td>
<td align="left">Percutaneous transluminal repair of defect of interatrial septum using prosthesis</td>
</tr>
<tr>
<td align="left">K13.4</td>
<td align="left">Percutaneous transluminal repair of defect of interatrial septum NEC</td>
</tr>
<tr>
<td align="left">K13.5</td>
<td align="left">Percutaneous transluminal repair of defect of unspecified septum using prosthesis</td>
</tr>
<tr>
<td align="left">K13.8</td>
<td align="left">Other specified transluminal repair of defect of septum</td>
</tr>
<tr>
<td align="left">K13.9</td>
<td align="left">Unspecified transluminal repair of defect of septum</td>
</tr>
<tr>
<td align="left">K14</td>
<td align="left">Other open operations on septum of heart</td>
</tr>
<tr>
<td align="left">K14.1</td>
<td align="left">Open enlargement of defect of atrial septum</td>
</tr>
<tr>
<td align="left">K14.2</td>
<td align="left">Open atrial septostomy</td>
</tr>
<tr>
<td align="left">K14.3</td>
<td align="left">Atrial septectomy</td>
</tr>
<tr>
<td align="left">K14.4</td>
<td align="left">Surgical atrial septation</td>
</tr>
<tr>
<td align="left">K14.5</td>
<td align="left">Open enlargement of defect of interventricular septum</td>
</tr>
<tr>
<td align="left">K14.8</td>
<td align="left">Other specified other open operations on septum of heart</td>
</tr>
<tr>
<td align="left">K14.9</td>
<td align="left">Unspecified other open operations on septum of heart</td>
</tr>
<tr>
<td align="left">K15</td>
<td align="left">Closed operations on septum of heart</td>
</tr>
<tr>
<td align="left">K15.1</td>
<td align="left">Closed enlargement of defect of atrial septum</td>
</tr>
<tr>
<td align="left">K15.2</td>
<td align="left">Closed atrial septostomy</td>
</tr>
<tr>
<td align="left">K15.8</td>
<td align="left">Other specified closed operations on septum of heart</td>
</tr>
<tr>
<td align="left">K15.9</td>
<td align="left">Unspecified closed operations on septum of heart</td>
</tr>
<tr>
<td align="left">K16</td>
<td align="left">Other therapeutic transluminal operations on septum of heart</td>
</tr>
<tr>
<td align="left">K16.1</td>
<td align="left">Percutaneous transluminal balloon atrial septostomy</td>
</tr>
<tr>
<td align="left">K16.2</td>
<td align="left">Percutaneous transluminal atrial septostomy NEC</td>
</tr>
<tr>
<td align="left">K16.3</td>
<td align="left">Percutaneous transluminal atrial septum fenestration closure with prosthesis</td>
</tr>
<tr>
<td align="left">K16.4</td>
<td align="left">Percutaneous transluminal atrial septum fenestration</td>
</tr>
<tr>
<td align="left">K16.5</td>
<td align="left">Percutaneous transluminal closure of patent oval foramen with prosthesis</td>
</tr>
<tr>
<td align="left">K16.6</td>
<td align="left">Percutaneous transluminal chemical mediated septal ablation</td>
</tr>
<tr>
<td align="left">K16.8</td>
<td align="left">Other specified other therapeutic transluminal operations on septum of heart</td>
</tr>
<tr>
<td align="left">K16.9</td>
<td align="left">Unspecified other therapeutic transluminal operations on septum of heart</td>
</tr>
</tbody>
</table>
<h2>Coronary heart disease not otherwise specified</h2>
<h4>Implementation</h4>
~~~
Use MODIFIED CALIBER 'Coronary heart disease not otherwise specified' phenotyping algorithm
At the specified date, a patient is considered to have had 'Coronary heart disease not otherwise specified' IF they meet any of the criteria below on or before the specified date.
The earliest date on which the individual meets any of the following criteria on or before the specified date is defined as the first event date.
1. No previous records meeting the criteria for stable angina OR unstable angina OR myocardial infarction
AND {
2. Primary care: chd_nos_gprd: category 1, 3
a) IF Read code in chd_nos_gprd list, THEN chd_nos_gprd= appropriate category
b) OR IF enttype = 16, chd_nos_gprd = 1
OR
3. Secondary care: chd_nos_hes: category 3 }
~~~
<h4>Primary care (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//primary_care/CPRD_CHD_NOS.csv'>CPRD_CHD_NOS.csv</a>)</h4>
<table>
<thead>
<tr>
<th>Read code</th>
<th>Read Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left">14AL.00</td>
<td align="left">H/O: Treatment for ischaemic heart disease</td>
</tr>
<tr>
<td align="left">6A2..00</td>
<td align="left">Coronary heart disease annual review</td>
</tr>
<tr>
<td align="left">6A4..00</td>
<td align="left">Coronary heart disease review</td>
</tr>
<tr>
<td align="left">8B3k.00</td>
<td align="left">Coronary heart disease medication review</td>
</tr>
<tr>
<td align="left">8H2V.00</td>
<td align="left">Admit ischaemic heart disease emergency</td>
</tr>
<tr>
<td align="left">G3...00</td>
<td align="left">Ischaemic heart disease</td>
</tr>
<tr>
<td align="left">G3...11</td>
<td align="left">Arteriosclerotic heart disease</td>
</tr>
<tr>
<td align="left">G3...12</td>
<td align="left">Atherosclerotic heart disease</td>
</tr>
<tr>
<td align="left">G3...13</td>
<td align="left">IHD - Ischaemic heart disease</td>
</tr>
<tr>
<td align="left">G31..00</td>
<td align="left">Other acute and subacute ischaemic heart disease</td>
</tr>
<tr>
<td align="left">G311000</td>
<td align="left">Myocardial infarction aborted</td>
</tr>
<tr>
<td align="left">G311011</td>
<td align="left">MI - myocardial infarction aborted</td>
</tr>
<tr>
<td align="left">G31y.00</td>
<td align="left">Other acute and subacute ischaemic heart disease</td>
</tr>
<tr>
<td align="left">G31y200</td>
<td align="left">Subendocardial ischaemia</td>
</tr>
<tr>
<td align="left">G31y300</td>
<td align="left">Transient myocardial ischaemia</td>
</tr>
<tr>
<td align="left">G31yz00</td>
<td align="left">Other acute and subacute ischaemic heart disease NOS</td>
</tr>
<tr>
<td align="left">G34..00</td>
<td align="left">Other chronic ischaemic heart disease</td>
</tr>
<tr>
<td align="left">G340.00</td>
<td align="left">Coronary atherosclerosis</td>
</tr>
<tr>
<td align="left">G340.12</td>
<td align="left">Coronary artery disease</td>
</tr>
<tr>
<td align="left">G343.00</td>
<td align="left">Ischaemic cardiomyopathy</td>
</tr>
<tr>
<td align="left">G344.00</td>
<td align="left">Silent myocardial ischaemia</td>
</tr>
<tr>
<td align="left">G34y.00</td>
<td align="left">Other specified chronic ischaemic heart disease</td>
</tr>
<tr>
<td align="left">G34y100</td>
<td align="left">Chronic myocardial ischaemia</td>
</tr>
<tr>
<td align="left">G34yz00</td>
<td align="left">Other specified chronic ischaemic heart disease NOS</td>
</tr>
<tr>
<td align="left">G34z.00</td>
<td align="left">Other chronic ischaemic heart disease NOS</td>
</tr>
<tr>
<td align="left">G34z000</td>
<td align="left">Asymptomatic coronary heart disease</td>
</tr>
<tr>
<td align="left">G3y..00</td>
<td align="left">Other specified ischaemic heart disease</td>
</tr>
<tr>
<td align="left">G3z..00</td>
<td align="left">Ischaemic heart disease NOS</td>
</tr>
<tr>
<td align="left">Gyu3.00</td>
<td align="left">[X]Ischaemic heart diseases</td>
</tr>
<tr>
<td align="left">Gyu3200</td>
<td align="left">[X]Other forms of acute ischaemic heart disease</td>
</tr>
<tr>
<td align="left">Gyu3300</td>
<td align="left">[X]Other forms of chronic ischaemic heart disease</td>
</tr>
</tbody>
</table>
<h4>Secondary care diagnoses (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//secondary_care/ICD_CHD_NOS.csv'>ICD_CHD_NOS.csv</a>)</h4>
<table>
<thead>
<tr>
<th>ICD-10 code</th>
<th>ICD-10 Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left">I250</td>
<td align="left">Atherosclerotic cardiovascular disease, so described</td>
</tr>
<tr>
<td align="left">I251</td>
<td align="left">Atherosclerotic heart disease</td>
</tr>
<tr>
<td align="left">I253</td>
<td align="left">Aneurysm of heart</td>
</tr>
<tr>
<td align="left">I254</td>
<td align="left">Coronary artery aneurysm</td>
</tr>
<tr>
<td align="left">I255</td>
<td align="left">Ischaemic cardiomyopathy</td>
</tr>
<tr>
<td align="left">I256</td>
<td align="left">Silent myocardial ischaemia</td>
</tr>
<tr>
<td align="left">I258</td>
<td align="left">Other forms of chronic ischaemic heart disease</td>
</tr>
<tr>
<td align="left">I259</td>
<td align="left">Chronic ischaemic heart disease, unspecified</td>
</tr>
</tbody>
</table>
<h2>Crohn's disease</h2>
<h4>Implementation</h4>
~~~
At the specified date, a patient is defined as having had 'Crohn's disease' IF they meet the criteria for any of the following on or before the specified date. The earliest date on which the individual meets any of the following criteria on or before the specified date is defined as the first event date:
Primary care
1. 'Crohn's disease' diagnosis or history of diagnosis or procedure during a consultation
OR
Secondary care
1. ALL diagnoses of 'Crohn's disease' or history of diagnosis during a hospitalization
~~~
<h4>Primary care (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//primary_care/CPRD_crohns.csv'>CPRD_crohns.csv</a>)</h4>
<table>
<thead>
<tr>
<th>Read code</th>
<th>Read Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left">J08z900</td>
<td align="left">Orofacial Crohn's disease</td>
</tr>
<tr>
<td align="left">J400000</td>
<td align="left">Regional enteritis of the duodenum</td>
</tr>
<tr>
<td align="left">J400100</td>
<td align="left">Regional enteritis of the jejunum</td>
</tr>
<tr>
<td align="left">J400200</td>
<td align="left">Crohn's disease of the terminal ileum</td>
</tr>
<tr>
<td align="left">J400300</td>
<td align="left">Crohn's disease of the ileum unspecified</td>
</tr>
<tr>
<td align="left">J400400</td>
<td align="left">Crohn's disease of the ileum NOS</td>
</tr>
<tr>
<td align="left">J400500</td>
<td align="left">Exacerbation of Crohn's disease of small intestine</td>
</tr>
<tr>
<td align="left">J400.00</td>
<td align="left">Regional enteritis of the small bowel</td>
</tr>
<tr>
<td align="left">J400z00</td>
<td align="left">Crohn's disease of the small bowel NOS</td>
</tr>
<tr>
<td align="left">J401000</td>
<td align="left">Regional enteritis of the colon</td>
</tr>
<tr>
<td align="left">J401100</td>
<td align="left">Regional enteritis of the rectum</td>
</tr>
<tr>
<td align="left">J401200</td>
<td align="left">Exacerbation of Crohn's disease of large intestine</td>
</tr>
<tr>
<td align="left">J401.00</td>
<td align="left">Regional enteritis of the large bowel</td>
</tr>
<tr>
<td align="left">J401z00</td>
<td align="left">Crohn's disease of the large bowel NOS</td>
</tr>
<tr>
<td align="left">J401z11</td>
<td align="left">Crohn's colitis</td>
</tr>
<tr>
<td align="left">J402.00</td>
<td align="left">Regional ileocolitis</td>
</tr>
<tr>
<td align="left">J40..00</td>
<td align="left">Regional enteritis - Crohn's disease</td>
</tr>
<tr>
<td align="left">J40..11</td>
<td align="left">Crohn's disease</td>
</tr>
<tr>
<td align="left">J40..12</td>
<td align="left">Granulomatous enteritis</td>
</tr>
<tr>
<td align="left">J40z.00</td>
<td align="left">Regional enteritis NOS</td>
</tr>
<tr>
<td align="left">J40z.11</td>
<td align="left">Crohn's disease NOS</td>
</tr>
<tr>
<td align="left">Jyu4000</td>
<td align="left">[X]Other Crohn's disease</td>
</tr>
<tr>
<td align="left">N031100</td>
<td align="left">Arthropathy in Crohn's disease</td>
</tr>
<tr>
<td align="left">N045300</td>
<td align="left">Juvenile arthritis in Crohn's disease</td>
</tr>
<tr>
<td align="left">ZR3S.00</td>
<td align="left">Crohn's disease activity index</td>
</tr>
<tr>
<td align="left">ZR3S.11</td>
<td align="left">CDAI - Crohn's disease activity index</td>
</tr>
</tbody>
</table>
<h4>Secondary care diagnoses (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//secondary_care/ICD_crohns.csv'>ICD_crohns.csv</a>)</h4>
<table>
<thead>
<tr>
<th>ICD-10 code</th>
<th>ICD-10 Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left">K50</td>
<td align="left">Crohn's disease [regional enteritis]</td>
</tr>
</tbody>
</table>
<h2>Cystic Fibrosis</h2>
<h4>Implementation</h4>
~~~
At the specified date, a patient is defined as having had 'Cystic Fibrosis' IF they meet the criteria for any of the following on or before the specified date. The earliest date on which the individual meets any of the following criteria on or before the specified date is defined as the first event date:
Primary care
1. 'Cystic Fibrosis' diagnosis or history of diagnosis during a consultation
OR
Secondary care (ICD10)
1. ALL diagnoses of 'Cystic Fibrosis' or history of diagnosis during a hospitalization
~~~
<h4>Primary care (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//primary_care/CPRD_CF.csv'>CPRD_CF.csv</a>)</h4>
<table>
<thead>
<tr>
<th>Read code</th>
<th>Read Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left">66k0.00</td>
<td align="left">Cystic fibrosis annual review</td>
</tr>
<tr>
<td align="left">66k..00</td>
<td align="left">Cystic fibrosis monitoring</td>
</tr>
<tr>
<td align="left">C10N100</td>
<td align="left">Cystic fibrosis related diabetes mellitus</td>
</tr>
<tr>
<td align="left">C370000</td>
<td align="left">Cystic fibrosis with no meconium ileus</td>
</tr>
<tr>
<td align="left">C370100</td>
<td align="left">Cystic fibrosis with meconium ileus</td>
</tr>
<tr>
<td align="left">C370111</td>
<td align="left">Meconium ileus in cystic fibrosis</td>
</tr>
<tr>
<td align="left">C370200</td>
<td align="left">Cystic fibrosis with pulmonary manifestations</td>
</tr>
<tr>
<td align="left">C370300</td>
<td align="left">Cystic fibrosis with intestinal manifestations</td>
</tr>
<tr>
<td align="left">C370400</td>
<td align="left">Arthropathy in cystic fibrosis</td>
</tr>
<tr>
<td align="left">C370500</td>
<td align="left">Cystic fibrosis with distal intestinal obstruction syndrome</td>
</tr>
<tr>
<td align="left">C370700</td>
<td align="left">Liver disease due to cystic fibrosis</td>
</tr>
<tr>
<td align="left">C370800</td>
<td align="left">Cystic fibrosis related cirrhosis</td>
</tr>
<tr>
<td align="left">C370900</td>
<td align="left">Exacerbation of cystic fibrosis</td>
</tr>
<tr>
<td align="left">C370.00</td>
<td align="left">Cystic fibrosis</td>
</tr>
<tr>
<td align="left">C370.11</td>
<td align="left">Fibrocystic disease</td>
</tr>
<tr>
<td align="left">C370.12</td>
<td align="left">Mucoviscidosis</td>
</tr>
<tr>
<td align="left">C370y00</td>
<td align="left">Cystic fibrosis with other manifestations</td>
</tr>
<tr>
<td align="left">C370z00</td>
<td align="left">Cystic fibrosis NOS</td>
</tr>
</tbody>
</table>
<h4>Secondary care diagnoses (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//secondary_care/ICD_CF.csv'>ICD_CF.csv</a>)</h4>
<table>
<thead>
<tr>
<th>ICD-10 code</th>
<th>ICD-10 Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left">E84</td>
<td align="left">Cystic fibrosis</td>
</tr>
</tbody>
</table>
<h2>Delirium, not induced by alcohol and other psychoactive substances</h2>
<h4>Implementation</h4>
~~~
At the specified date, a patient is defined as having had 'Delirium, not induced by alcohol and other psychoactive substances', not induced by alcohol and other psychoactive substances IF they meet the criteria for any of the following on or before the specified date. The earliest date on which the individual meets any of the following criteria on or before the specified date is defined as the first event date:
Primary care
1. 'Delirium, not induced by alcohol and other psychoactive substances', not induced by alcohol and other psychoactive substances diagnosis or history of diagnosis during a consultation
OR
Secondary care
1. ALL diagnoses of 'Delirium, not induced by alcohol and other psychoactive substances', not induced by alcohol and other psychoactive substances or history of diagnosis during a hospitalization
~~~
<h4>Primary care (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//primary_care/CPRD_delirium.csv'>CPRD_delirium.csv</a>)</h4>
<table>
<thead>
<tr>
<th>Read code</th>
<th>Read Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="right">2233</td>
<td align="left">O/E - delirious</td>
</tr>
<tr>
<td align="left">E001100</td>
<td align="left">Presenile dementia with delirium</td>
</tr>
<tr>
<td align="left">E003.00</td>
<td align="left">Senile dementia with delirium</td>
</tr>
<tr>
<td align="left">E004100</td>
<td align="left">Arteriosclerotic dementia with delirium</td>
</tr>
<tr>
<td align="left">E030000</td>
<td align="left">Acute confusional state, post traumatic</td>
</tr>
<tr>
<td align="left">E030100</td>
<td align="left">Acute confusional state, of infective origin</td>
</tr>
<tr>
<td align="left">E030200</td>
<td align="left">Acute confusional state, of endocrine origin</td>
</tr>
<tr>
<td align="left">E030300</td>
<td align="left">Acute confusional state, of metabolic origin</td>
</tr>
<tr>
<td align="left">E030400</td>
<td align="left">Acute confusional state, of cerebrovascular origin</td>
</tr>
<tr>
<td align="left">E030.00</td>
<td align="left">Acute confusional state</td>
</tr>
<tr>
<td align="left">E030.11</td>
<td align="left">Delirium - acute organic</td>
</tr>
<tr>
<td align="left">E031000</td>
<td align="left">Subacute confusional state, post traumatic</td>
</tr>
<tr>
<td align="left">E031100</td>
<td align="left">Subacute confusional state, of infective origin</td>
</tr>
<tr>
<td align="left">E031300</td>
<td align="left">Subacute confusional state, of metabolic origin</td>
</tr>
<tr>
<td align="left">E031400</td>
<td align="left">Subacute confusional state, of cerebrovascular origin</td>
</tr>
<tr>
<td align="left">E031.00</td>
<td align="left">Subacute confusional state</td>
</tr>
<tr>
<td align="left">E031.11</td>
<td align="left">Delirium - subacute organic</td>
</tr>
<tr>
<td align="left">E031z00</td>
<td align="left">Subacute confusional state NOS</td>
</tr>
<tr>
<td align="left">Eu04000</td>
<td align="left">[X]Delirium not superimposed on dementia, so described</td>
</tr>
<tr>
<td align="left">Eu04100</td>
<td align="left">[X]Delirium superimposed on dementia</td>
</tr>
<tr>
<td align="left">Eu04.00</td>
<td align="left">[X]Delirium, not induced by alcohol+other psychoactive subs</td>
</tr>
<tr>
<td align="left">Eu04.11</td>
<td align="left">[X]Acute / subacute brain syndrome</td>
</tr>
<tr>
<td align="left">Eu04.12</td>
<td align="left">[X]Acute / subacute confusional state, nonalcoholic</td>
</tr>
<tr>
<td align="left">Eu04.13</td>
<td align="left">[X]Acute / subacute infective psychosis</td>
</tr>
<tr>
<td align="left">Eu04.14</td>
<td align="left">[X]Acute / subacute organic reaction</td>
</tr>
<tr>
<td align="left">Eu04.15</td>
<td align="left">[X]Acute / subacute psycho-organic reaction</td>
</tr>
<tr>
<td align="left">Eu04y00</td>
<td align="left">[X]Other delirium</td>
</tr>
<tr>
<td align="left">Eu04z00</td>
<td align="left">[X]Delirium, unspecified</td>
</tr>
</tbody>
</table>
<h4>Secondary care diagnoses (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//secondary_care/ICD_delirium.csv'>ICD_delirium.csv</a>)</h4>
<table>
<thead>
<tr>
<th>ICD-10 code</th>
<th>ICD-10 Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left">F05</td>
<td align="left">Delirium, not induced by alcohol and other psychoactive substances</td>
</tr>
</tbody>
</table>
<h2>Dementia</h2>
<h4>Implementation</h4>
~~~
At the specified date, a patient is defined as having had 'Dementia' IF they meet the criteria for any of the following on or before the specified date. The earliest date on which the individual meets any of the following criteria on or before the specified date is defined as the first event date:
Primary care
1. 'Dementia' diagnosis or history of diagnosis during a consultation
OR
Secondary care (ICD10)
1. ALL diagnoses of 'Dementia' or history of diagnosis during a hospitalization
~~~
<h4>Primary care (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//primary_care/CPRD_dementia.csv'>CPRD_dementia.csv</a>)</h4>
<table>
<thead>
<tr>
<th>Read code</th>
<th>Read Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="right">1461</td>
<td align="left">H/O: dementia</td>
</tr>
<tr>
<td align="left">66h..00</td>
<td align="left">Dementia monitoring</td>
</tr>
<tr>
<td align="left">6AB..00</td>
<td align="left">Dementia annual review</td>
</tr>
<tr>
<td align="left">8CMZ.00</td>
<td align="left">Dementia care plan</td>
</tr>
<tr>
<td align="left">9hD0.00</td>
<td align="left">Excepted from dementia quality indicators: Patient unsuitabl</td>
</tr>
<tr>
<td align="left">9hD1.00</td>
<td align="left">Excepted from dementia quality indicators: Informed dissent</td>
</tr>
<tr>
<td align="left">9hD..00</td>
<td align="left">Exception reporting: dementia quality indicators</td>
</tr>
<tr>
<td align="left">9Ou1.00</td>
<td align="left">Dementia monitoring first letter</td>
</tr>
<tr>
<td align="left">9Ou2.00</td>
<td align="left">Dementia monitoring second letter</td>
</tr>
<tr>
<td align="left">9Ou3.00</td>
<td align="left">Dementia monitoring third letter</td>
</tr>
<tr>
<td align="left">9Ou4.00</td>
<td align="left">Dementia monitoring verbal invite</td>
</tr>
<tr>
<td align="left">9Ou5.00</td>
<td align="left">Dementia monitoring telephone invite</td>
</tr>
<tr>
<td align="left">9Ou..00</td>
<td align="left">Dementia monitoring administration</td>
</tr>
<tr>
<td align="left">E000.00</td>
<td align="left">Uncomplicated senile dementia</td>
</tr>
<tr>
<td align="left">E001000</td>
<td align="left">Uncomplicated presenile dementia</td>
</tr>
<tr>
<td align="left">E001100</td>
<td align="left">Presenile dementia with delirium</td>
</tr>
<tr>
<td align="left">E001200</td>
<td align="left">Presenile dementia with paranoia</td>
</tr>
<tr>
<td align="left">E001300</td>
<td align="left">Presenile dementia with depression</td>
</tr>
<tr>
<td align="left">E001.00</td>
<td align="left">Presenile dementia</td>
</tr>
<tr>
<td align="left">E001z00</td>
<td align="left">Presenile dementia NOS</td>
</tr>
<tr>
<td align="left">E002000</td>
<td align="left">Senile dementia with paranoia</td>
</tr>
<tr>
<td align="left">E002100</td>
<td align="left">Senile dementia with depression</td>
</tr>
<tr>
<td align="left">E002.00</td>
<td align="left">Senile dementia with depressive or paranoid features</td>
</tr>
<tr>
<td align="left">E002z00</td>
<td align="left">Senile dementia with depressive or paranoid features NOS</td>
</tr>
<tr>
<td align="left">E003.00</td>
<td align="left">Senile dementia with delirium</td>
</tr>
<tr>
<td align="left">E004000</td>
<td align="left">Uncomplicated arteriosclerotic dementia</td>
</tr>
<tr>
<td align="left">E004100</td>
<td align="left">Arteriosclerotic dementia with delirium</td>
</tr>
<tr>
<td align="left">E004200</td>
<td align="left">Arteriosclerotic dementia with paranoia</td>
</tr>
<tr>
<td align="left">E004300</td>
<td align="left">Arteriosclerotic dementia with depression</td>
</tr>
<tr>
<td align="left">E004.00</td>
<td align="left">Arteriosclerotic dementia</td>
</tr>
<tr>
<td align="left">E004.11</td>
<td align="left">Multi infarct dementia</td>
</tr>
<tr>
<td align="left">E004z00</td>
<td align="left">Arteriosclerotic dementia NOS</td>
</tr>
<tr>
<td align="left">E00..00</td>
<td align="left">Senile and presenile organic psychotic conditions</td>
</tr>
<tr>
<td align="left">E00..11</td>
<td align="left">Senile dementia</td>
</tr>
<tr>
<td align="left">E00..12</td>
<td align="left">Senile/presenile dementia</td>
</tr>
<tr>
<td align="left">E00y.00</td>
<td align="left">Other senile and presenile organic psychoses</td>
</tr>
<tr>
<td align="left">E00y.11</td>
<td align="left">Presbyophrenic psychosis</td>
</tr>
<tr>
<td align="left">E00z.00</td>
<td align="left">Senile or presenile psychoses NOS</td>
</tr>
<tr>
<td align="left">E041.00</td>
<td align="left">Dementia in conditions EC</td>
</tr>
<tr>
<td align="left">Eu00000</td>
<td align="left">[X]Dementia in Alzheimer's disease with early onset</td>
</tr>
<tr>
<td align="left">Eu00011</td>
<td align="left">[X]Presenile dementia,Alzheimer's type</td>
</tr>
<tr>
<td align="left">Eu00012</td>
<td align="left">[X]Primary degen dementia, Alzheimer's type, presenile onset</td>
</tr>
<tr>
<td align="left">Eu00013</td>
<td align="left">[X]Alzheimer's disease type 2</td>
</tr>
<tr>
<td align="left">Eu00100</td>
<td align="left">[X]Dementia in Alzheimer's disease with late onset</td>
</tr>
<tr>
<td align="left">Eu00111</td>
<td align="left">[X]Alzheimer's disease type 1</td>
</tr>
<tr>
<td align="left">Eu00112</td>
<td align="left">[X]Senile dementia,Alzheimer's type</td>
</tr>
<tr>
<td align="left">Eu00113</td>
<td align="left">[X]Primary degen dementia of Alzheimer's type, senile onset</td>
</tr>
<tr>
<td align="left">Eu00200</td>
<td align="left">[X]Dementia in Alzheimer's dis, atypical or mixed type</td>
</tr>
<tr>
<td align="left">Eu00.00</td>
<td align="left">[X]Dementia in Alzheimer's disease</td>
</tr>
<tr>
<td align="left">Eu00z00</td>
<td align="left">[X]Dementia in Alzheimer's disease, unspecified</td>
</tr>
<tr>
<td align="left">Eu00z11</td>
<td align="left">[X]Alzheimer's dementia unspec</td>
</tr>
<tr>
<td align="left">Eu01000</td>
<td align="left">[X]Vascular dementia of acute onset</td>
</tr>
<tr>
<td align="left">Eu01100</td>
<td align="left">[X]Multi-infarct dementia</td>
</tr>
<tr>
<td align="left">Eu01111</td>
<td align="left">[X]Predominantly cortical dementia</td>
</tr>
<tr>
<td align="left">Eu01200</td>
<td align="left">[X]Subcortical vascular dementia</td>
</tr>
<tr>
<td align="left">Eu01300</td>
<td align="left">[X]Mixed cortical and subcortical vascular dementia</td>
</tr>
<tr>
<td align="left">Eu01.00</td>
<td align="left">[X]Vascular dementia</td>
</tr>
<tr>
<td align="left">Eu01.11</td>
<td align="left">[X]Arteriosclerotic dementia</td>
</tr>
<tr>
<td align="left">Eu01y00</td>
<td align="left">[X]Other vascular dementia</td>
</tr>
<tr>
<td align="left">Eu01z00</td>
<td align="left">[X]Vascular dementia, unspecified</td>
</tr>
<tr>
<td align="left">Eu02z00</td>
<td align="left">[X] Unspecified dementia</td>
</tr>
<tr>
<td align="left">Eu02z11</td>
<td align="left">[X] Presenile dementia NOS</td>
</tr>
<tr>
<td align="left">Eu02z12</td>
<td align="left">[X] Presenile psychosis NOS</td>
</tr>
<tr>
<td align="left">Eu02z13</td>
<td align="left">[X] Primary degenerative dementia NOS</td>
</tr>
<tr>
<td align="left">Eu02z14</td>
<td align="left">[X] Senile dementia NOS</td>
</tr>
<tr>
<td align="left">Eu02z15</td>
<td align="left">[X] Senile psychosis NOS</td>
</tr>
<tr>
<td align="left">Eu02z16</td>
<td align="left">[X] Senile dementia, depressed or paranoid type</td>
</tr>
<tr>
<td align="left">Eu04100</td>
<td align="left">[X]Delirium superimposed on dementia</td>
</tr>
<tr>
<td align="left">F110000</td>
<td align="left">Alzheimer's disease with early onset</td>
</tr>
<tr>
<td align="left">F110100</td>
<td align="left">Alzheimer's disease with late onset</td>
</tr>
<tr>
<td align="left">F110.00</td>
<td align="left">Alzheimer's disease</td>
</tr>
<tr>
<td align="left">Fyu3000</td>
<td align="left">[X]Other Alzheimer's disease</td>
</tr>
<tr>
<td align="left">ZS7C500</td>
<td align="left">Language disorder of dementia</td>
</tr>
</tbody>
</table>
<h4>Secondary care diagnoses (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//secondary_care/ICD_dementia.csv'>ICD_dementia.csv</a>)</h4>
<table>
<thead>
<tr>
<th>ICD-10 code</th>
<th>ICD-10 Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left">F00</td>
<td align="left">Dementia in Alzheimer's disease</td>
</tr>
<tr>
<td align="left">F01</td>
<td align="left">Vascular dementia</td>
</tr>
<tr>
<td align="left">F03</td>
<td align="left">Unspecified dementia</td>
</tr>
<tr>
<td align="left">F05.1</td>
<td align="left">Delirium superimposed on dementia</td>
</tr>
<tr>
<td align="left">G30</td>
<td align="left">Alzheimer's disease</td>
</tr>
</tbody>
</table>
<h2>Depression</h2>
<h4>Implementation</h4>
~~~
At the specified date, a patient is defined as having had 'Depression' IF they meet the criteria for any of the following on or before the specified date. The earliest date on which the individual meets any of the following criteria on or before the specified date is defined as the first event date:
Primary care
1. 'Depression' diagnosis or history of diagnosis during a consultation
OR
Secondary care
1. ALL diagnoses of 'Depression' or history of diagnosis during a hospitalization
~~~
<h4>Primary care (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//primary_care/CPRD_depression.csv'>CPRD_depression.csv</a>)</h4>
<table>
<thead>
<tr>
<th>Read code</th>
<th>Read Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="right">1465</td>
<td align="left">H/O: depression</td>
</tr>
<tr>
<td align="left">212S.00</td>
<td align="left">Depression resolved</td>
</tr>
<tr>
<td align="left">8BK0.00</td>
<td align="left">Depression management programme</td>
</tr>
<tr>
<td align="left">8CAa.00</td>
<td align="left">Patient given advice about management of depression</td>
</tr>
<tr>
<td align="left">8HHq.00</td>
<td align="left">Referral for guided self-help for depression</td>
</tr>
<tr>
<td align="left">9H90.00</td>
<td align="left">Depression annual review</td>
</tr>
<tr>
<td align="left">9H91.00</td>
<td align="left">Depression medication review</td>
</tr>
<tr>
<td align="left">9H92.00</td>
<td align="left">Depression interim review</td>
</tr>
<tr>
<td align="left">9HA0.00</td>
<td align="left">On depression register</td>
</tr>
<tr>
<td align="left">9k40.00</td>
<td align="left">Depression - enhanced service completed</td>
</tr>
<tr>
<td align="left">9k4..00</td>
<td align="left">Depression - enhanced services administration</td>
</tr>
<tr>
<td align="left">9kQ..00</td>
<td align="left">On full dose long term treatment depression - enh serv admin</td>
</tr>
<tr>
<td align="left">9Ov0.00</td>
<td align="left">Depression monitoring first letter</td>
</tr>
<tr>
<td align="left">9Ov1.00</td>
<td align="left">Depression monitoring second letter</td>
</tr>
<tr>
<td align="left">9Ov2.00</td>
<td align="left">Depression monitoring third letter</td>
</tr>
<tr>
<td align="left">9Ov3.00</td>
<td align="left">Depression monitoring verbal invite</td>
</tr>
<tr>
<td align="left">9Ov4.00</td>
<td align="left">Depression monitoring telephone invite</td>
</tr>
<tr>
<td align="left">9Ov..00</td>
<td align="left">Depression monitoring administration</td>
</tr>
<tr>
<td align="left">E001300</td>
<td align="left">Presenile dementia with depression</td>
</tr>
<tr>
<td align="left">E002100</td>
<td align="left">Senile dementia with depression</td>
</tr>
<tr>
<td align="left">E004300</td>
<td align="left">Arteriosclerotic dementia with depression</td>
</tr>
<tr>
<td align="left">E112000</td>
<td align="left">Single major depressive episode, unspecified</td>
</tr>
<tr>
<td align="left">E112100</td>
<td align="left">Single major depressive episode, mild</td>
</tr>
<tr>
<td align="left">E112200</td>
<td align="left">Single major depressive episode, moderate</td>
</tr>
<tr>
<td align="left">E112300</td>
<td align="left">Single major depressive episode, severe, without psychosis</td>
</tr>
<tr>
<td align="left">E112400</td>
<td align="left">Single major depressive episode, severe, with psychosis</td>
</tr>
<tr>
<td align="left">E112500</td>
<td align="left">Single major depressive episode, partial or unspec remission</td>
</tr>
<tr>
<td align="left">E112600</td>
<td align="left">Single major depressive episode, in full remission</td>
</tr>
<tr>
<td align="left">E112.00</td>
<td align="left">Single major depressive episode</td>
</tr>
<tr>
<td align="left">E112.11</td>
<td align="left">Agitated depression</td>
</tr>
<tr>
<td align="left">E112.12</td>
<td align="left">Endogenous depression first episode</td>
</tr>
<tr>
<td align="left">E112.13</td>
<td align="left">Endogenous depression first episode</td>
</tr>
<tr>
<td align="left">E112.14</td>
<td align="left">Endogenous depression</td>
</tr>
<tr>
<td align="left">E112z00</td>
<td align="left">Single major depressive episode NOS</td>
</tr>
<tr>
<td align="left">E113000</td>
<td align="left">Recurrent major depressive episodes, unspecified</td>
</tr>
<tr>
<td align="left">E113100</td>
<td align="left">Recurrent major depressive episodes, mild</td>
</tr>
<tr>
<td align="left">E113200</td>
<td align="left">Recurrent major depressive episodes, moderate</td>
</tr>
<tr>
<td align="left">E113300</td>
<td align="left">Recurrent major depressive episodes, severe, no psychosis</td>
</tr>
<tr>
<td align="left">E113400</td>
<td align="left">Recurrent major depressive episodes, severe, with psychosis</td>
</tr>
<tr>
<td align="left">E113500</td>
<td align="left">Recurrent major depressive episodes,partial/unspec remission</td>
</tr>
<tr>
<td align="left">E113600</td>
<td align="left">Recurrent major depressive episodes, in full remission</td>
</tr>
<tr>
<td align="left">E113700</td>
<td align="left">Recurrent depression</td>
</tr>
<tr>
<td align="left">E113.00</td>
<td align="left">Recurrent major depressive episode</td>
</tr>
<tr>
<td align="left">E113.11</td>
<td align="left">Endogenous depression - recurrent</td>
</tr>
<tr>
<td align="left">E113z00</td>
<td align="left">Recurrent major depressive episode NOS</td>
</tr>
<tr>
<td align="left">E118.00</td>
<td align="left">Seasonal affective disorder</td>
</tr>
<tr>
<td align="left">E11..12</td>
<td align="left">Depressive psychoses</td>
</tr>
<tr>
<td align="left">E11y200</td>
<td align="left">Atypical depressive disorder</td>
</tr>
<tr>
<td align="left">E11z200</td>
<td align="left">Masked depression</td>
</tr>
<tr>
<td align="left">E130.00</td>
<td align="left">Reactive depressive psychosis</td>
</tr>
<tr>
<td align="left">E130.11</td>
<td align="left">Psychotic reactive depression</td>
</tr>
<tr>
<td align="left">E135.00</td>
<td align="left">Agitated depression</td>
</tr>
<tr>
<td align="left">E200300</td>
<td align="left">Anxiety with depression</td>
</tr>
<tr>
<td align="left">E291.00</td>
<td align="left">Prolonged depressive reaction</td>
</tr>
<tr>
<td align="left">E2B1.00</td>
<td align="left">Chronic depression</td>
</tr>
<tr>
<td align="left">E2B..00</td>
<td align="left">Depressive disorder NEC</td>
</tr>
<tr>
<td align="left">Eu20400</td>
<td align="left">[X]Post-schizophrenic depression</td>
</tr>
<tr>
<td align="left">Eu25100</td>
<td align="left">[X]Schizoaffective disorder, depressive type</td>
</tr>
<tr>
<td align="left">Eu25111</td>
<td align="left">[X]Schizoaffective psychosis, depressive type</td>
</tr>
<tr>
<td align="left">Eu25112</td>
<td align="left">[X]Schizophreniform psychosis, depressive type</td>
</tr>
<tr>
<td align="left">Eu32000</td>
<td align="left">[X]Mild depressive episode</td>
</tr>
<tr>
<td align="left">Eu32100</td>
<td align="left">[X]Moderate depressive episode</td>
</tr>
<tr>
<td align="left">Eu32200</td>
<td align="left">[X]Severe depressive episode without psychotic symptoms</td>
</tr>
<tr>
<td align="left">Eu32211</td>
<td align="left">[X]Single episode agitated depressn w'out psychotic symptoms</td>
</tr>
<tr>
<td align="left">Eu32212</td>
<td align="left">[X]Single episode major depression w'out psychotic symptoms</td>
</tr>
<tr>
<td align="left">Eu32213</td>
<td align="left">[X]Single episode vital depression w'out psychotic symptoms</td>
</tr>
<tr>
<td align="left">Eu32300</td>
<td align="left">[X]Severe depressive episode with psychotic symptoms</td>
</tr>
<tr>
<td align="left">Eu32311</td>
<td align="left">[X]Single episode of major depression and psychotic symptoms</td>
</tr>
<tr>
<td align="left">Eu32312</td>
<td align="left">[X]Single episode of psychogenic depressive psychosis</td>
</tr>
<tr>
<td align="left">Eu32313</td>
<td align="left">[X]Single episode of psychotic depression</td>
</tr>
<tr>
<td align="left">Eu32314</td>
<td align="left">[X]Single episode of reactive depressive psychosis</td>
</tr>
<tr>
<td align="left">Eu32400</td>
<td align="left">[X]Mild depression</td>
</tr>
<tr>
<td align="left">Eu32500</td>
<td align="left">[X]Major depression, mild</td>
</tr>
<tr>
<td align="left">Eu32600</td>
<td align="left">[X]Major depression, moderately severe</td>
</tr>
<tr>
<td align="left">Eu32700</td>
<td align="left">[X]Major depression, severe without psychotic symptoms</td>
</tr>
<tr>
<td align="left">Eu32800</td>
<td align="left">[X]Major depression, severe with psychotic symptoms</td>
</tr>
<tr>
<td align="left">Eu32900</td>
<td align="left">[X]Single major depr ep, severe with psych, psych in remiss</td>
</tr>
<tr>
<td align="left">Eu32A00</td>
<td align="left">[X]Recurr major depr ep, severe with psych, psych in remiss</td>
</tr>
<tr>
<td align="left">Eu32.00</td>
<td align="left">[X]Depressive episode</td>
</tr>
<tr>
<td align="left">Eu32.11</td>
<td align="left">[X]Single episode of depressive reaction</td>
</tr>
<tr>
<td align="left">Eu32.12</td>
<td align="left">[X]Single episode of psychogenic depression</td>
</tr>
<tr>
<td align="left">Eu32.13</td>
<td align="left">[X]Single episode of reactive depression</td>
</tr>
<tr>
<td align="left">Eu32y00</td>
<td align="left">[X]Other depressive episodes</td>
</tr>
<tr>
<td align="left">Eu32y11</td>
<td align="left">[X]Atypical depression</td>
</tr>
<tr>
<td align="left">Eu32y12</td>
<td align="left">[X]Single episode of masked depression NOS</td>
</tr>
<tr>
<td align="left">Eu32z00</td>
<td align="left">[X]Depressive episode, unspecified</td>
</tr>
<tr>
<td align="left">Eu32z11</td>
<td align="left">[X]Depression NOS</td>
</tr>
<tr>
<td align="left">Eu32z12</td>
<td align="left">[X]Depressive disorder NOS</td>
</tr>
<tr>
<td align="left">Eu32z13</td>
<td align="left">[X]Prolonged single episode of reactive depression</td>
</tr>
<tr>
<td align="left">Eu32z14</td>
<td align="left">[X] Reactive depression NOS</td>
</tr>
<tr>
<td align="left">Eu33000</td>
<td align="left">[X]Recurrent depressive disorder, current episode mild</td>
</tr>
<tr>
<td align="left">Eu33100</td>
<td align="left">[X]Recurrent depressive disorder, current episode moderate</td>
</tr>
<tr>
<td align="left">Eu33200</td>
<td align="left">[X]Recurr depress disorder cur epi severe without psyc sympt</td>
</tr>
<tr>
<td align="left">Eu33211</td>
<td align="left">[X]Endogenous depression without psychotic symptoms</td>
</tr>
<tr>
<td align="left">Eu33212</td>
<td align="left">[X]Major depression, recurrent without psychotic symptoms</td>
</tr>
<tr>
<td align="left">Eu33213</td>
<td align="left">[X]Manic-depress psychosis,depressd,no psychotic symptoms</td>
</tr>
<tr>
<td align="left">Eu33214</td>
<td align="left">[X]Vital depression, recurrent without psychotic symptoms</td>
</tr>
<tr>
<td align="left">Eu33300</td>
<td align="left">[X]Recurrent depress disorder cur epi severe with psyc symp</td>
</tr>
<tr>
<td align="left">Eu33311</td>
<td align="left">[X]Endogenous depression with psychotic symptoms</td>
</tr>
<tr>
<td align="left">Eu33312</td>
<td align="left">[X]Manic-depress psychosis,depressed type+psychotic symptoms</td>
</tr>
<tr>
<td align="left">Eu33313</td>
<td align="left">[X]Recurr severe episodes/major depression+psychotic symptom</td>
</tr>
<tr>
<td align="left">Eu33314</td>
<td align="left">[X]Recurr severe episodes/psychogenic depressive psychosis</td>
</tr>
<tr>
<td align="left">Eu33315</td>
<td align="left">[X]Recurrent severe episodes of psychotic depression</td>
</tr>
<tr>
<td align="left">Eu33316</td>
<td align="left">[X]Recurrent severe episodes/reactive depressive psychosis</td>
</tr>
<tr>
<td align="left">Eu33400</td>
<td align="left">[X]Recurrent depressive disorder, currently in remission</td>
</tr>
<tr>
<td align="left">Eu33.00</td>
<td align="left">[X]Recurrent depressive disorder</td>
</tr>
<tr>
<td align="left">Eu33.11</td>
<td align="left">[X]Recurrent episodes of depressive reaction</td>
</tr>
<tr>
<td align="left">Eu33.12</td>
<td align="left">[X]Recurrent episodes of psychogenic depression</td>
</tr>
<tr>
<td align="left">Eu33.13</td>
<td align="left">[X]Recurrent episodes of reactive depression</td>
</tr>
<tr>
<td align="left">Eu33.14</td>
<td align="left">[X]Seasonal depressive disorder</td>
</tr>
<tr>
<td align="left">Eu33.15</td>
<td align="left">[X]SAD - Seasonal affective disorder</td>
</tr>
<tr>
<td align="left">Eu33y00</td>
<td align="left">[X]Other recurrent depressive disorders</td>
</tr>
<tr>
<td align="left">Eu33z00</td>
<td align="left">[X]Recurrent depressive disorder, unspecified</td>
</tr>
<tr>
<td align="left">Eu33z11</td>
<td align="left">[X]Monopolar depression NOS</td>
</tr>
<tr>
<td align="left">Eu34100</td>
<td align="left">[X]Dysthymia</td>
</tr>
<tr>
<td align="left">Eu34111</td>
<td align="left">[X]Depressive neurosis</td>
</tr>
<tr>
<td align="left">Eu34112</td>
<td align="left">[X]Depressive personality disorder</td>
</tr>
<tr>
<td align="left">Eu34113</td>
<td align="left">[X]Neurotic depression</td>
</tr>
<tr>
<td align="left">Eu34114</td>
<td align="left">[X]Persistant anxiety depression</td>
</tr>
<tr>
<td align="left">Eu41200</td>
<td align="left">[X]Mixed anxiety and depressive disorder</td>
</tr>
<tr>
<td align="left">Eu41211</td>
<td align="left">[X]Mild anxiety depression</td>
</tr>
</tbody>
</table>
<h4>Secondary care diagnoses (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//secondary_care/ICD_depression.csv'>ICD_depression.csv</a>)</h4>
<table>
<thead>
<tr>
<th>ICD-10 code</th>
<th>ICD-10 Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left">F32</td>
<td align="left">Depressive episode</td>
</tr>
<tr>
<td align="left">F33</td>
<td align="left">Recurrent depressive disorder</td>
</tr>
</tbody>
</table>
<h2>Dermatitis (atopc/contact/other/unspecified)</h2>
<h4>Implementation</h4>
~~~
At the specified date, a patient is defined as having had 'Dermatitis (atopc/contact/other/unspecified)' IF they meet the criteria for any of the following on or before the specified date. The earliest date on which the individual meets any of the following criteria on or before the specified date is defined as the first event date:
Primary care
1. 'Dermatitis (atopc/contact/other/unspecified)' diagnosis or history of diagnosis during a consultation
OR
Secondary care (ICD10)
1. ALL diagnoses of 'Dermatitis (atopc/contact/other/unspecified)' or history of diagnosis during a hospitalization
~~~
<h4>Primary care (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//primary_care/CPRD_dermatitis.csv'>CPRD_dermatitis.csv</a>)</h4>
<table>
<thead>
<tr>
<th>Read code</th>
<th>Read Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left">14F1.00</td>
<td align="left">H/O: eczema</td>
</tr>
<tr>
<td align="left">26C4.00</td>
<td align="left">Nipple eczema</td>
</tr>
<tr>
<td align="left">3355.00</td>
<td align="left">Skin:type 1 immediate reaction</td>
</tr>
<tr>
<td align="left">C391211</td>
<td align="left">Thrombocytopenic eczema with immunodeficiency</td>
</tr>
<tr>
<td align="left">F4D3000</td>
<td align="left">Eczematous eyelid dermatitis</td>
</tr>
<tr>
<td align="left">F4D3100</td>
<td align="left">Contact or allergic eyelid dermatitis</td>
</tr>
<tr>
<td align="left">F4D3111</td>
<td align="left">Allergic dermatitis - eyelid</td>
</tr>
<tr>
<td align="left">F4D3112</td>
<td align="left">Contact eczema - eyelids</td>
</tr>
<tr>
<td align="left">F4D4.00</td>
<td align="left">Infective eyelid dermatitis of types resulting in deformity</td>
</tr>
<tr>
<td align="left">F4D5.00</td>
<td align="left">Other eyelid infective dermatitis</td>
</tr>
<tr>
<td align="left">F502400</td>
<td align="left">Acute eczematoid otitis extern</td>
</tr>
<tr>
<td align="left">F502411</td>
<td align="left">Eczema of external ear</td>
</tr>
<tr>
<td align="left">H330.00</td>
<td align="left">Extrinsic (atopic) asthma</td>
</tr>
<tr>
<td align="left">M07y.11</td>
<td align="left">Pustular eczema</td>
</tr>
<tr>
<td align="left">M07z.14</td>
<td align="left">Infected dermatitis</td>
</tr>
<tr>
<td align="left">M102.00</td>
<td align="left">Infectious eczematoid dermatitis</td>
</tr>
<tr>
<td align="left">M102.11</td>
<td align="left">Pustular eczema</td>
</tr>
<tr>
<td align="left">M104.00</td>
<td align="left">Pityriasis simplex</td>
</tr>
<tr>
<td align="left">M11..00</td>
<td align="left">Atopic dermatitis and related conditions</td>
</tr>
<tr>
<td align="left">M111.00</td>
<td align="left">Atopic dermatitis/eczema</td>
</tr>
<tr>
<td align="left">M1...11</td>
<td align="left">Dermatitis/dermatoses</td>
</tr>
<tr>
<td align="left">M112.00</td>
<td align="left">Infantile eczema</td>
</tr>
<tr>
<td align="left">M113.00</td>
<td align="left">Flexural eczema</td>
</tr>
<tr>
<td align="left">M114.00</td>
<td align="left">Allergic (intrinsic) eczema</td>
</tr>
<tr>
<td align="left">M115.00</td>
<td align="left">Besnier's prurigo</td>
</tr>
<tr>
<td align="left">M116.00</td>
<td align="left">Neurodermatitis - diffuse</td>
</tr>
<tr>
<td align="left">M116.11</td>
<td align="left">Brocq's neurodermatitis</td>
</tr>
<tr>
<td align="left">M117.00</td>
<td align="left">Neurodermatitis - atopic</td>
</tr>
<tr>
<td align="left">M119.00</td>
<td align="left">Discoid eczema</td>
</tr>
<tr>
<td align="left">M11A.00</td>
<td align="left">Asteatotic eczema</td>
</tr>
<tr>
<td align="left">M11z.00</td>
<td align="left">Atopic dermatitis NOS</td>
</tr>
<tr>
<td align="left">M120.00</td>
<td align="left">Contact dermatitis due to detergents</td>
</tr>
<tr>
<td align="left">M12..00</td>
<td align="left">Contact dermatitis and other eczemas</td>
</tr>
<tr>
<td align="left">M121.00</td>
<td align="left">Contact dermatitis due to oils and greases</td>
</tr>
<tr>
<td align="left">M12..11</td>
<td align="left">Contact dermatitis</td>
</tr>
<tr>
<td align="left">M121.11</td>
<td align="left">Grease contact dermatitis</td>
</tr>
<tr>
<td align="left">M121.12</td>
<td align="left">Oil contact dermatitis</td>
</tr>
<tr>
<td align="left">M12..12</td>
<td align="left">Contact eczema</td>
</tr>
<tr>
<td align="left">M12..13</td>
<td align="left">Occupational dermatitis</td>
</tr>
<tr>
<td align="left">M122000</td>
<td align="left">Contact dermatitis due to chlorocompound</td>
</tr>
<tr>
<td align="left">M122.00</td>
<td align="left">Contact dermatitis due to solvents</td>
</tr>
<tr>
<td align="left">M122100</td>
<td align="left">Contact dermatitis due to cyclohexane</td>
</tr>
<tr>
<td align="left">M122300</td>
<td align="left">Contact dermatitis due to glycol</td>
</tr>
<tr>
<td align="left">M122z00</td>
<td align="left">Contact dermatitis due to solvent NOS</td>
</tr>
<tr>
<td align="left">M123000</td>
<td align="left">Contact dermatitis due to arnica</td>
</tr>
<tr>
<td align="left">M123.00</td>
<td align="left">Contact dermatitis due to drugs and medicaments</td>
</tr>
<tr>
<td align="left">M123100</td>
<td align="left">Contact dermatitis due to fungicides</td>
</tr>
<tr>
<td align="left">M123200</td>
<td align="left">Contact dermatitis due to iodine</td>
</tr>
<tr>
<td align="left">M123300</td>
<td align="left">Contact dermatitis due to keratolytics</td>
</tr>
<tr>
<td align="left">M123400</td>
<td align="left">Contact dermatitis due to mercurials</td>
</tr>
<tr>
<td align="left">M123500</td>
<td align="left">Contact dermatitis due to neomycin</td>
</tr>
<tr>
<td align="left">M123600</td>
<td align="left">Contact dermatitis due to pediculocides</td>
</tr>
<tr>
<td align="left">M123700</td>
<td align="left">Contact dermatitis due to phenols</td>
</tr>
<tr>
<td align="left">M123800</td>
<td align="left">Contact dermatitis due to scabicides</td>
</tr>
<tr>
<td align="left">M123z00</td>
<td align="left">Contact dermatitis due to medicament NOS</td>
</tr>
<tr>
<td align="left">M124000</td>
<td align="left">Contact dermatitis due to acids</td>
</tr>
<tr>
<td align="left">M124.00</td>
<td align="left">Contact dermatitis due to other chemical products</td>
</tr>
<tr>
<td align="left">M124100</td>
<td align="left">Contact dermatitis due to adhesive plaster</td>
</tr>
<tr>
<td align="left">M124111</td>
<td align="left">Elastoplast contact dermatitis</td>
</tr>
<tr>
<td align="left">M124200</td>
<td align="left">Contact dermatitis due to alkalis</td>
</tr>
<tr>
<td align="left">M124300</td>
<td align="left">Contact dermatitis due to caustics</td>
</tr>
<tr>
<td align="left">M124400</td>
<td align="left">Contact dermatitis due to dichromate</td>
</tr>
<tr>
<td align="left">M124500</td>
<td align="left">Contact dermatitis due to insecticide</td>
</tr>
<tr>
<td align="left">M124600</td>
<td align="left">Contact dermatitis due to nylon</td>
</tr>
<tr>
<td align="left">M124700</td>
<td align="left">Contact dermatitis due to plastic</td>
</tr>
<tr>
<td align="left">M124800</td>
<td align="left">Contact dermatitis due to rubber</td>
</tr>
<tr>
<td align="left">M124z00</td>
<td align="left">Contact dermatitis: other chemicals NOS</td>
</tr>
<tr>
<td align="left">M125000</td>
<td align="left">Contact dermatitis due to cereals</td>
</tr>
<tr>
<td align="left">M125.00</td>
<td align="left">Contact dermatitis due to food in contact with skin</td>
</tr>
<tr>
<td align="left">M125100</td>
<td align="left">Contact dermatitis due to fish</td>
</tr>
<tr>
<td align="left">M125200</td>
<td align="left">Contact dermatitis due to flour</td>
</tr>
<tr>
<td align="left">M125300</td>
<td align="left">Contact dermatitis due to fruit</td>
</tr>
<tr>
<td align="left">M125400</td>
<td align="left">Contact dermatitis due to meat</td>
</tr>
<tr>
<td align="left">M125500</td>
<td align="left">Contact dermatitis due to milk</td>
</tr>
<tr>
<td align="left">M125z00</td>
<td align="left">Contact dermatitis due to food NOS</td>
</tr>
<tr>
<td align="left">M125z11</td>
<td align="left">Egg contact dermatitis</td>
</tr>
<tr>
<td align="left">M126000</td>
<td align="left">Contact dermatitis due to lacquer tree</td>
</tr>
<tr>
<td align="left">M126.00</td>
<td align="left">Contact dermatitis due to plants</td>
</tr>
<tr>
<td align="left">M126100</td>
<td align="left">Contact dermatitis due to poison-ivy</td>
</tr>
<tr>
<td align="left">M126200</td>
<td align="left">Contact dermatitis due to poison-oak</td>
</tr>
<tr>
<td align="left">M126300</td>
<td align="left">Contact dermatitis due to poison-sumac</td>
</tr>
<tr>
<td align="left">M126500</td>
<td align="left">Contact dermatitis due to primrose</td>
</tr>
<tr>
<td align="left">M126600</td>
<td align="left">Contact dermatitis due to ragweed</td>
</tr>
<tr>
<td align="left">M126z00</td>
<td align="left">Contact dermatitis due to plants NOS</td>
</tr>
<tr>
<td align="left">M128000</td>
<td align="left">Allergic contact dermatitis due to adhesives</td>
</tr>
<tr>
<td align="left">M128.00</td>
<td align="left">Allergic contact dermatitis</td>
</tr>
<tr>
<td align="left">M128100</td>
<td align="left">Allergic contact dermatitis due to cosmetics</td>
</tr>
<tr>
<td align="left">M128200</td>
<td align="left">Allergic contact dermatitis due drugs in contact with skin</td>
</tr>
<tr>
<td align="left">M128300</td>
<td align="left">Allergic contact dermatitis due to dyes</td>
</tr>
<tr>
<td align="left">M128400</td>
<td align="left">Allergic contact dermatitis due to other chemical products</td>
</tr>
<tr>
<td align="left">M128500</td>
<td align="left">Allergic contact dermatitis due to food in contact with skin</td>
</tr>
<tr>
<td align="left">M128600</td>
<td align="left">Allergic contact dermatitis due to plants, except food</td>
</tr>
<tr>
<td align="left">M129000</td>
<td align="left">Irritant contact dermatitis due to cosmetics</td>
</tr>
<tr>
<td align="left">M129.00</td>
<td align="left">Irritant contact dermatitis</td>
</tr>
<tr>
<td align="left">M129100</td>
<td align="left">Irritant contact dermatitis due drugs in contact with skin</td>
</tr>
<tr>
<td align="left">M129200</td>
<td align="left">Irritant contact dermatitis due to other chemical products</td>
</tr>
<tr>
<td align="left">M129300</td>
<td align="left">Irritant contact dermatitis due to food in contact with skin</td>
</tr>
<tr>
<td align="left">M129400</td>
<td align="left">Irritant contact dermatitis due to plants, except food</td>
</tr>
<tr>
<td align="left">M12y000</td>
<td align="left">Contact dermatitis due to cosmetics</td>
</tr>
<tr>
<td align="left">M12y.00</td>
<td align="left">Contact dermatitis due to other specified agents</td>
</tr>
<tr>
<td align="left">M12y011</td>
<td align="left">Lanolin contact dermatitis</td>
</tr>
<tr>
<td align="left">M12y012</td>
<td align="left">Perfume contact dermatitis</td>
</tr>
<tr>
<td align="left">M12y100</td>
<td align="left">Contact dermatitis due to cold weather</td>
</tr>
<tr>
<td align="left">M12y200</td>
<td align="left">Contact dermatitis due to dyes</td>
</tr>
<tr>
<td align="left">M12y300</td>
<td align="left">Contact dermatitis due to furs</td>
</tr>
<tr>
<td align="left">M12y400</td>
<td align="left">Contact dermatitis due to hot weather</td>
</tr>
<tr>
<td align="left">M12y500</td>
<td align="left">Contact dermatitis due to infra-red rays</td>
</tr>
<tr>
<td align="left">M12y600</td>
<td align="left">Contact dermatitis due to jewellery</td>
</tr>
<tr>
<td align="left">M12y700</td>
<td align="left">Contact dermatitis due to light (excluding sunlight)</td>
</tr>
<tr>
<td align="left">M12y800</td>
<td align="left">Contact dermatitis due to metals</td>
</tr>
<tr>
<td align="left">M12y811</td>
<td align="left">Nickel sensitivity</td>
</tr>
<tr>
<td align="left">M12y900</td>
<td align="left">Contact dermatitis due to preservatives</td>
</tr>
<tr>
<td align="left">M12yA00</td>
<td align="left">Contact dermatitis due to radiation NOS</td>
</tr>
<tr>
<td align="left">M12yB00</td>
<td align="left">Contact dermatitis due to ultra-violet rays (excluding sun)</td>
</tr>
<tr>
<td align="left">M12yC00</td>
<td align="left">Contact dermatitis due to x-rays</td>
</tr>
<tr>
<td align="left">M12yD00</td>
<td align="left">Contact dermatitis due to casting materials</td>
</tr>
<tr>
<td align="left">M12yz00</td>
<td align="left">Contact dermatitis: specified agent NOS</td>
</tr>
<tr>
<td align="left">M12z000</td>
<td align="left">Dermatitis NOS</td>
</tr>
<tr>
<td align="left">M12z.00</td>
<td align="left">Contact dermatitis NOS</td>
</tr>
<tr>
<td align="left">M12z100</td>
<td align="left">Eczema NOS</td>
</tr>
<tr>
<td align="left">M12z111</td>
<td align="left">Discoid eczema</td>
</tr>
<tr>
<td align="left">M12z200</td>
<td align="left">Infected eczema</td>
</tr>
<tr>
<td align="left">M12z300</td>
<td align="left">Hand eczema</td>
</tr>
<tr>
<td align="left">M12z400</td>
<td align="left">Erythrodermic eczema</td>
</tr>
<tr>
<td align="left">M12zz00</td>
<td align="left">Contact dermatitis NOS</td>
</tr>
<tr>
<td align="left">M130000</td>
<td align="left">Generalized skin eruption due to drugs and medicaments</td>
</tr>
<tr>
<td align="left">M130.00</td>
<td align="left">Ingestion dermatitis due to drugs</td>
</tr>
<tr>
<td align="left">M13..00</td>
<td align="left">Ingestion dermatitis</td>
</tr>
<tr>
<td align="left">M130100</td>
<td align="left">Localized skin eruption due to drugs and medicaments</td>
</tr>
<tr>
<td align="left">M130.11</td>
<td align="left">Drug induced rash</td>
</tr>
<tr>
<td align="left">M130200</td>
<td align="left">Drug-induced erythroderma</td>
</tr>
<tr>
<td align="left">M131.00</td>
<td align="left">Ingestion dermatitis due to food</td>
</tr>
<tr>
<td align="left">M13y.00</td>
<td align="left">Ingestion dermatitis due to other specified substance</td>
</tr>
<tr>
<td align="left">M13z.00</td>
<td align="left">Ingestion dermatitis NOS</td>
</tr>
<tr>
<td align="left">M15y200</td>
<td align="left">Pityriasis rubra (Hebra)</td>
</tr>
<tr>
<td align="left">M165000</td>
<td align="left">Pityriasis alba</td>
</tr>
<tr>
<td align="left">M173.00</td>
<td align="left">Lichen simplex</td>
</tr>
<tr>
<td align="left">M182000</td>
<td align="left">Prurigo aestivalis</td>
</tr>
<tr>
<td align="left">M182.00</td>
<td align="left">Prurigo</td>
</tr>
<tr>
<td align="left">M182200</td>
<td align="left">Prurigo mitis</td>
</tr>
<tr>
<td align="left">M182300</td>
<td align="left">Prurigo simplex</td>
</tr>
<tr>
<td align="left">M182z00</td>
<td align="left">Prurigo NOS</td>
</tr>
<tr>
<td align="left">M183000</td>
<td align="left">Prurigo nodularis (Hyde's disease)</td>
</tr>
<tr>
<td align="left">M183.00</td>
<td align="left">Lichenification and lichen simplex chronicus</td>
</tr>
<tr>
<td align="left">M183100</td>
<td align="left">Neurodermatitis circumscripta</td>
</tr>
<tr>
<td align="left">M183200</td>
<td align="left">Lichen simplex</td>
</tr>
<tr>
<td align="left">M183z00</td>
<td align="left">Lichenification NOS</td>
</tr>
<tr>
<td align="left">M1B..11</td>
<td align="left">Juvenile plantar dermatitis</td>
</tr>
<tr>
<td align="left">M1y0.00</td>
<td align="left">Nummular dermatitis</td>
</tr>
<tr>
<td align="left">M1y1.00</td>
<td align="left">Cutaneous autosensitization</td>
</tr>
<tr>
<td align="left">M252000</td>
<td align="left">Dyshidrosis unspecified</td>
</tr>
<tr>
<td align="left">M252.00</td>
<td align="left">Dyshidrosis</td>
</tr>
<tr>
<td align="left">M252100</td>
<td align="left">Pompholyx unspecified</td>
</tr>
<tr>
<td align="left">M252200</td>
<td align="left">Cheiropompholyx</td>
</tr>
<tr>
<td align="left">M252300</td>
<td align="left">Podopompholyx</td>
</tr>
<tr>
<td align="left">M252z00</td>
<td align="left">Dyshidrosis NOS</td>
</tr>
<tr>
<td align="left">M2y4100</td>
<td align="left">Menstrual dermatosis</td>
</tr>
<tr>
<td align="left">M2y4811</td>
<td align="left">Juvenile plantar dermatitis</td>
</tr>
<tr>
<td align="left">Myu2.00</td>
<td align="left">[X]Dermatitis and eczema</td>
</tr>
<tr>
<td align="left">Myu2100</td>
<td align="left">[X]Allergic contact dermatitis due to oth chemical products</td>
</tr>
<tr>
<td align="left">Myu2200</td>
<td align="left">[X]Exacerbation of eczema</td>
</tr>
<tr>
<td align="left">Myu2300</td>
<td align="left">[X]Allergic contact dermatitis due to other agents</td>
</tr>
<tr>
<td align="left">Myu2400</td>
<td align="left">[X]Irritant contact dermatitis due to oth chemical products</td>
</tr>
<tr>
<td align="left">Myu2500</td>
<td align="left">[X]Irritant contact dermatitis due to other agents</td>
</tr>
<tr>
<td align="left">Myu2600</td>
<td align="left">[X]Unspcfd contact dermatitis due to other chemical products</td>
</tr>
<tr>
<td align="left">Myu2700</td>
<td align="left">[X]Unspecified contact dermatitis due to other agents</td>
</tr>
<tr>
<td align="left">Myu2A00</td>
<td align="left">[X]Other prurigo</td>
</tr>
<tr>
<td align="left">Myu2C00</td>
<td align="left">[X]Other specified dermatitis</td>
</tr>
</tbody>
</table>
<h4>Secondary care diagnoses (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//secondary_care/ICD_dermatitis.csv'>ICD_dermatitis.csv</a>)</h4>
<table>
<thead>
<tr>
<th>ICD-10 code</th>
<th>ICD-10 Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left">L20</td>
<td align="left">Atopic dermatitis</td>
</tr>
<tr>
<td align="left">L23</td>
<td align="left">Allergic contact dermatitis</td>
</tr>
<tr>
<td align="left">L24</td>
<td align="left">Irritant contact dermatitis</td>
</tr>
<tr>
<td align="left">L25</td>
<td align="left">Unspecified contact dermatitis</td>
</tr>
<tr>
<td align="left">L27</td>
<td align="left">Dermatitis due to substances taken internally</td>
</tr>
<tr>
<td align="left">L26</td>
<td align="left">Exfoliative dermatitis</td>
</tr>
<tr>
<td align="left">L28</td>
<td align="left">Lichen simplex chronicus and prurigo</td>
</tr>
<tr>
<td align="left">L30.0</td>
<td align="left">Nummular dermatitis</td>
</tr>
<tr>
<td align="left">L30.1</td>
<td align="left">Dyshidrosis [pompholyx]</td>
</tr>
<tr>
<td align="left">L30.2</td>
<td align="left">Cutaneous autosensitization</td>
</tr>
<tr>
<td align="left">L30.5</td>
<td align="left">Pityriasis alba</td>
</tr>
<tr>
<td align="left">L30.8</td>
<td align="left">Other specified dermatitis</td>
</tr>
<tr>
<td align="left">L30.9</td>
<td align="left">Dermatitis, unspecified</td>
</tr>
</tbody>
</table>
<h2>Diabetes</h2>
<h4>Implementation</h4>
~~~
Use MODIFIED CALIBER 'Diabetes' phenotyping algorithm for
1. T1DM,
2. T2DM,
3. 'Diabetes' other or uncertain type:
IF there is at least one record for code for type 2 'Diabetes' (diabdiag_gprd = 4)
and no record for type 1 'Diabetes' (no record with diabdiag_gprd = 3)
then classify the patient as type 2 'Diabetes'
ELSE if there is at least one record for code for type I 'Diabetes' (diabdiag_gprd = 3)
and no record for type 2 'Diabetes' (no record with diabdiag_gprd = 4)
then classify the patient as type 1 'Diabetes'
ELSE if there is at least one record of type 1 'Diabetes' (diabdiag_gprd = 3)
and type 2 'Diabetes' (diabdiag_gprd = 4)
then classify as 'Diabetes' other or uncertain type
ELSE if there are no diabdiag_gprd records for this patient:
If there is at least one record for Non-insulin-dependent 'Diabetes' mellitus (NIDDM) (dm_gprd = 4 or dm_hes = 4)
and no record for IDDM (no record with dm_gprd = 3 or dm_hes = 3)
then classify the patient as type 2 'Diabetes'
ELSE if there is at least one record for Insulin-dependent 'Diabetes' mellitus (IDDM) (dm_gprd = 3 or dm_hes = 3)
and no record for NIDDM (no record with dm_gprd = 4 or dm_hes = 4)
then classify the patient as type 1 'Diabetes'
ELSE if there is at least one record of 'Diabetes' (dm_gprd or dm_hes category 3, 4, 5 or 6)
then classify as 'Diabetes' other or uncertain type
ELSE classify as no 'Diabetes'
~~~
**NOTE**: This algorithm uses components from an existing phenotyping algorithm created by Julie George and Anoop Shah for the CALIBER project: [dm_cprd](/primary_care/CPRD_caliber_dm_cprd.csv), [diabdiag_cprd](/primary_care/CPRD_caliber_diabdiag_cprd.csv) and [dm_hes](/secondary_care/ICD_caliber_dm_hes.csv). More information on the algorithm in the associated publication [Lancet Diabetes Endocrinol
. 2015 Feb;3(2):105-13. doi: 10.1016/S2213-8587(14)70219-0. Epub 2014 Nov 11.](https://www.sciencedirect.com/science/article/pii/S2213858714702190?via%3Dihub)
<h4>Primary care (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//primary_care/CPRD_diabetes.csv'>CPRD_diabetes.csv</a>)</h4>
<table>
<thead>
<tr>
<th>Read code</th>
<th>Read Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left">C108.12</td>
<td align="left">Type 1 diabetes mellitus</td>
</tr>
<tr>
<td align="left">C108.13</td>
<td align="left">Type I diabetes mellitus</td>
</tr>
<tr>
<td align="left">C108011</td>
<td align="left">Type I diabetes mellitus with renal complications</td>
</tr>
<tr>
<td align="left">C108012</td>
<td align="left">Type 1 diabetes mellitus with renal complications</td>
</tr>
<tr>
<td align="left">C108211</td>
<td align="left">Type I diabetes mellitus with neurological complications</td>
</tr>
<tr>
<td align="left">C108212</td>
<td align="left">Type 1 diabetes mellitus with neurological complications</td>
</tr>
<tr>
<td align="left">C108411</td>
<td align="left">Unstable type I diabetes mellitus</td>
</tr>
<tr>
<td align="left">C108412</td>
<td align="left">Unstable type 1 diabetes mellitus</td>
</tr>
<tr>
<td align="left">C108511</td>
<td align="left">Type I diabetes mellitus with ulcer</td>
</tr>
<tr>
<td align="left">C108512</td>
<td align="left">Type 1 diabetes mellitus with ulcer</td>
</tr>
<tr>
<td align="left">C108711</td>
<td align="left">Type I diabetes mellitus with retinopathy</td>
</tr>
<tr>
<td align="left">C108712</td>
<td align="left">Type 1 diabetes mellitus with retinopathy</td>
</tr>
<tr>
<td align="left">C108811</td>
<td align="left">Type I diabetes mellitus - poor control</td>
</tr>
<tr>
<td align="left">C108812</td>
<td align="left">Type 1 diabetes mellitus - poor control</td>
</tr>
<tr>
<td align="left">C108911</td>
<td align="left">Type I diabetes mellitus maturity onset</td>
</tr>
<tr>
<td align="left">C108912</td>
<td align="left">Type 1 diabetes mellitus maturity onset</td>
</tr>
<tr>
<td align="left">C108A11</td>
<td align="left">Type I diabetes mellitus without complication</td>
</tr>
<tr>
<td align="left">C108D11</td>
<td align="left">Type I diabetes mellitus with nephropathy</td>
</tr>
<tr>
<td align="left">C108E11</td>
<td align="left">Type I diabetes mellitus with hypoglycaemic coma</td>
</tr>
<tr>
<td align="left">C108E12</td>
<td align="left">Type 1 diabetes mellitus with hypoglycaemic coma</td>
</tr>
<tr>
<td align="left">C108F11</td>
<td align="left">Type I diabetes mellitus with diabetic cataract</td>
</tr>
<tr>
<td align="left">C108H11</td>
<td align="left">Type I diabetes mellitus with arthropathy</td>
</tr>
<tr>
<td align="left">C108J11</td>
<td align="left">Type I diabetes mellitus with neuropathic arthropathy</td>
</tr>
<tr>
<td align="left">C108J12</td>
<td align="left">Type 1 diabetes mellitus with neuropathic arthropathy</td>
</tr>
<tr>
<td align="left">C10E.00</td>
<td align="left">Type 1 diabetes mellitus</td>
</tr>
<tr>
<td align="left">C10E.11</td>
<td align="left">Type I diabetes mellitus</td>
</tr>
<tr>
<td align="left">C10E000</td>
<td align="left">Type 1 diabetes mellitus with renal complications</td>
</tr>
<tr>
<td align="left">C10E100</td>
<td align="left">Type 1 diabetes mellitus with ophthalmic complications</td>
</tr>
<tr>
<td align="left">C10E200</td>
<td align="left">Type 1 diabetes mellitus with neurological complications</td>
</tr>
<tr>
<td align="left">C10E300</td>
<td align="left">Type 1 diabetes mellitus with multiple complications</td>
</tr>
<tr>
<td align="left">C10E311</td>
<td align="left">Type I diabetes mellitus with multiple complications</td>
</tr>
<tr>
<td align="left">C10E400</td>
<td align="left">Unstable type 1 diabetes mellitus</td>
</tr>
<tr>
<td align="left">C10E411</td>
<td align="left">Unstable type I diabetes mellitus</td>
</tr>
<tr>
<td align="left">C10E500</td>
<td align="left">Type 1 diabetes mellitus with ulcer</td>
</tr>
<tr>
<td align="left">C10E511</td>
<td align="left">Type I diabetes mellitus with ulcer</td>
</tr>
<tr>
<td align="left">C10E600</td>
<td align="left">Type 1 diabetes mellitus with gangrene</td>
</tr>
<tr>
<td align="left">C10E700</td>
<td align="left">Type 1 diabetes mellitus with retinopathy</td>
</tr>
<tr>
<td align="left">C10E711</td>
<td align="left">Type I diabetes mellitus with retinopathy</td>
</tr>
<tr>
<td align="left">C10E800</td>
<td align="left">Type 1 diabetes mellitus - poor control</td>
</tr>
<tr>
<td align="left">C10E900</td>
<td align="left">Type 1 diabetes mellitus maturity onset</td>
</tr>
<tr>
<td align="left">C10E911</td>
<td align="left">Type I diabetes mellitus maturity onset</td>
</tr>
<tr>
<td align="left">C10EA00</td>
<td align="left">Type 1 diabetes mellitus without complication</td>
</tr>
<tr>
<td align="left">C10EA11</td>
<td align="left">Type I diabetes mellitus without complication</td>
</tr>
<tr>
<td align="left">C10EB00</td>
<td align="left">Type 1 diabetes mellitus with mononeuropathy</td>
</tr>
<tr>
<td align="left">C10EC00</td>
<td align="left">Type 1 diabetes mellitus with polyneuropathy</td>
</tr>
<tr>
<td align="left">C10EC11</td>
<td align="left">Type I diabetes mellitus with polyneuropathy</td>
</tr>
<tr>
<td align="left">C10ED00</td>
<td align="left">Type 1 diabetes mellitus with nephropathy</td>
</tr>
<tr>
<td align="left">C10EE00</td>
<td align="left">Type 1 diabetes mellitus with hypoglycaemic coma</td>
</tr>
<tr>
<td align="left">C10EF00</td>
<td align="left">Type 1 diabetes mellitus with diabetic cataract</td>
</tr>
<tr>
<td align="left">C10EG00</td>
<td align="left">Type 1 diabetes mellitus with peripheral angiopathy</td>
</tr>
<tr>
<td align="left">C10EH00</td>
<td align="left">Type 1 diabetes mellitus with arthropathy</td>
</tr>
<tr>
<td align="left">C10EJ00</td>
<td align="left">Type 1 diabetes mellitus with neuropathic arthropathy</td>
</tr>
<tr>
<td align="left">C10EK00</td>
<td align="left">Type 1 diabetes mellitus with persistent proteinuria</td>
</tr>
<tr>
<td align="left">C10EL00</td>
<td align="left">Type 1 diabetes mellitus with persistent microalbuminuria</td>
</tr>
<tr>
<td align="left">C10EM00</td>
<td align="left">Type 1 diabetes mellitus with ketoacidosis</td>
</tr>
<tr>
<td align="left">C10EM11</td>
<td align="left">Type I diabetes mellitus with ketoacidosis</td>
</tr>
<tr>
<td align="left">C10EN00</td>
<td align="left">Type 1 diabetes mellitus with ketoacidotic coma</td>
</tr>
<tr>
<td align="left">C10EN11</td>
<td align="left">Type I diabetes mellitus with ketoacidotic coma</td>
</tr>
<tr>
<td align="left">C10EP00</td>
<td align="left">Type 1 diabetes mellitus with exudative maculopathy</td>
</tr>
<tr>
<td align="left">C10EP11</td>
<td align="left">Type I diabetes mellitus with exudative maculopathy</td>
</tr>
<tr>
<td align="left">C10EQ00</td>
<td align="left">Type 1 diabetes mellitus with gastroparesis</td>
</tr>
<tr>
<td align="left">C109.12</td>
<td align="left">Type 2 diabetes mellitus</td>
</tr>
<tr>
<td align="left">C109.13</td>
<td align="left">Type II diabetes mellitus</td>
</tr>
<tr>
<td align="left">C109011</td>
<td align="left">Type II diabetes mellitus with renal complications</td>
</tr>
<tr>
<td align="left">C109012</td>
<td align="left">Type 2 diabetes mellitus with renal complications</td>
</tr>
<tr>
<td align="left">C109111</td>
<td align="left">Type II diabetes mellitus with ophthalmic complications</td>
</tr>
<tr>
<td align="left">C109112</td>
<td align="left">Type 2 diabetes mellitus with ophthalmic complications</td>
</tr>
<tr>
<td align="left">C109211</td>
<td align="left">Type II diabetes mellitus with neurological complications</td>
</tr>
<tr>
<td align="left">C109212</td>
<td align="left">Type 2 diabetes mellitus with neurological complications</td>
</tr>
<tr>
<td align="left">C109411</td>
<td align="left">Type II diabetes mellitus with ulcer</td>
</tr>
<tr>
<td align="left">C109412</td>
<td align="left">Type 2 diabetes mellitus with ulcer</td>
</tr>
<tr>
<td align="left">C109511</td>
<td align="left">Type II diabetes mellitus with gangrene</td>
</tr>
<tr>
<td align="left">C109512</td>
<td align="left">Type 2 diabetes mellitus with gangrene</td>
</tr>
<tr>
<td align="left">C109611</td>
<td align="left">Type II diabetes mellitus with retinopathy</td>
</tr>
<tr>
<td align="left">C109612</td>
<td align="left">Type 2 diabetes mellitus with retinopathy</td>
</tr>
<tr>
<td align="left">C109711</td>
<td align="left">Type II diabetes mellitus - poor control</td>
</tr>
<tr>
<td align="left">C109712</td>
<td align="left">Type 2 diabetes mellitus - poor control</td>
</tr>
<tr>
<td align="left">C109A11</td>
<td align="left">Type II diabetes mellitus with mononeuropathy</td>
</tr>
<tr>
<td align="left">C109B11</td>
<td align="left">Type II diabetes mellitus with polyneuropathy</td>
</tr>
<tr>
<td align="left">C109C11</td>
<td align="left">Type II diabetes mellitus with nephropathy</td>
</tr>
<tr>
<td align="left">C109C12</td>
<td align="left">Type 2 diabetes mellitus with nephropathy</td>
</tr>
<tr>
<td align="left">C109D11</td>
<td align="left">Type II diabetes mellitus with hypoglycaemic coma</td>
</tr>
<tr>
<td align="left">C109D12</td>
<td align="left">Type 2 diabetes mellitus with hypoglycaemic coma</td>
</tr>
<tr>
<td align="left">C109E11</td>
<td align="left">Type II diabetes mellitus with diabetic cataract</td>
</tr>
<tr>
<td align="left">C109E12</td>
<td align="left">Type 2 diabetes mellitus with diabetic cataract</td>
</tr>
<tr>
<td align="left">C109F11</td>
<td align="left">Type II diabetes mellitus with peripheral angiopathy</td>
</tr>
<tr>
<td align="left">C109F12</td>
<td align="left">Type 2 diabetes mellitus with peripheral angiopathy</td>
</tr>
<tr>
<td align="left">C109G11</td>
<td align="left">Type II diabetes mellitus with arthropathy</td>
</tr>
<tr>
<td align="left">C109G12</td>
<td align="left">Type 2 diabetes mellitus with arthropathy</td>
</tr>
<tr>
<td align="left">C109H11</td>
<td align="left">Type II diabetes mellitus with neuropathic arthropathy</td>
</tr>
<tr>
<td align="left">C109H12</td>
<td align="left">Type 2 diabetes mellitus with neuropathic arthropathy</td>
</tr>
<tr>
<td align="left">C109J00</td>
<td align="left">Insulin treated Type 2 diabetes mellitus</td>
</tr>
<tr>
<td align="left">C109J12</td>
<td align="left">Insulin treated Type II diabetes mellitus</td>
</tr>
<tr>
<td align="left">C109K00</td>
<td align="left">Hyperosmolar non-ketotic state in type 2 diabetes mellitus</td>
</tr>
<tr>
<td align="left">C10F.00</td>
<td align="left">Type 2 diabetes mellitus</td>
</tr>
<tr>
<td align="left">C10F.11</td>
<td align="left">Type II diabetes mellitus</td>
</tr>
<tr>
<td align="left">C10F000</td>
<td align="left">Type 2 diabetes mellitus with renal complications</td>
</tr>
<tr>
<td align="left">C10F011</td>
<td align="left">Type II diabetes mellitus with renal complications</td>
</tr>
<tr>
<td align="left">C10F100</td>
<td align="left">Type 2 diabetes mellitus with ophthalmic complications</td>
</tr>
<tr>
<td align="left">C10F200</td>
<td align="left">Type 2 diabetes mellitus with neurological complications</td>
</tr>
<tr>
<td align="left">C10F211</td>
<td align="left">Type II diabetes mellitus with neurological complications</td>
</tr>
<tr>
<td align="left">C10F300</td>
<td align="left">Type 2 diabetes mellitus with multiple complications</td>
</tr>
<tr>
<td align="left">C10F311</td>
<td align="left">Type II diabetes mellitus with multiple complications</td>
</tr>
<tr>
<td align="left">C10F400</td>
<td align="left">Type 2 diabetes mellitus with ulcer</td>
</tr>
<tr>
<td align="left">C10F411</td>
<td align="left">Type II diabetes mellitus with ulcer</td>
</tr>
<tr>
<td align="left">C10F500</td>
<td align="left">Type 2 diabetes mellitus with gangrene</td>
</tr>
<tr>
<td align="left">C10F600</td>
<td align="left">Type 2 diabetes mellitus with retinopathy</td>
</tr>
<tr>
<td align="left">C10F611</td>
<td align="left">Type II diabetes mellitus with retinopathy</td>
</tr>
<tr>
<td align="left">C10F700</td>
<td align="left">Type 2 diabetes mellitus - poor control</td>
</tr>
<tr>
<td align="left">C10F711</td>
<td align="left">Type II diabetes mellitus - poor control</td>
</tr>
<tr>
<td align="left">C10F900</td>
<td align="left">Type 2 diabetes mellitus without complication</td>
</tr>
<tr>
<td align="left">C10F911</td>
<td align="left">Type II diabetes mellitus without complication</td>
</tr>
<tr>
<td align="left">C10FA00</td>
<td align="left">Type 2 diabetes mellitus with mononeuropathy</td>
</tr>
<tr>
<td align="left">C10FA11</td>
<td align="left">Type II diabetes mellitus with mononeuropathy</td>
</tr>
<tr>
<td align="left">C10FB00</td>
<td align="left">Type 2 diabetes mellitus with polyneuropathy</td>
</tr>
<tr>
<td align="left">C10FB11</td>
<td align="left">Type II diabetes mellitus with polyneuropathy</td>
</tr>
<tr>
<td align="left">C10FC00</td>
<td align="left">Type 2 diabetes mellitus with nephropathy</td>
</tr>
<tr>
<td align="left">C10FD00</td>
<td align="left">Type 2 diabetes mellitus with hypoglycaemic coma</td>
</tr>
<tr>
<td align="left">C10FD11</td>
<td align="left">Type II diabetes mellitus with hypoglycaemic coma</td>
</tr>
<tr>
<td align="left">C10FE00</td>
<td align="left">Type 2 diabetes mellitus with diabetic cataract</td>
</tr>
<tr>
<td align="left">C10FE11</td>
<td align="left">Type II diabetes mellitus with diabetic cataract</td>
</tr>
<tr>
<td align="left">C10FF00</td>
<td align="left">Type 2 diabetes mellitus with peripheral angiopathy</td>
</tr>
<tr>
<td align="left">C10FG00</td>
<td align="left">Type 2 diabetes mellitus with arthropathy</td>
</tr>
<tr>
<td align="left">C10FH00</td>
<td align="left">Type 2 diabetes mellitus with neuropathic arthropathy</td>
</tr>
<tr>
<td align="left">C10FJ00</td>
<td align="left">Insulin treated Type 2 diabetes mellitus</td>
</tr>
<tr>
<td align="left">C10FJ11</td>
<td align="left">Insulin treated Type II diabetes mellitus</td>
</tr>
<tr>
<td align="left">C10FK00</td>
<td align="left">Hyperosmolar non-ketotic state in type 2 diabetes mellitus</td>
</tr>
<tr>
<td align="left">C10FL00</td>
<td align="left">Type 2 diabetes mellitus with persistent proteinuria</td>
</tr>
<tr>
<td align="left">C10FL11</td>
<td align="left">Type II diabetes mellitus with persistent proteinuria</td>
</tr>
<tr>
<td align="left">C10FM00</td>
<td align="left">Type 2 diabetes mellitus with persistent microalbuminuria</td>
</tr>
<tr>
<td align="left">C10FM11</td>
<td align="left">Type II diabetes mellitus with persistent microalbuminuria</td>
</tr>
<tr>
<td align="left">C10FN00</td>
<td align="left">Type 2 diabetes mellitus with ketoacidosis</td>
</tr>
<tr>
<td align="left">C10FP00</td>
<td align="left">Type 2 diabetes mellitus with ketoacidotic coma</td>
</tr>
<tr>
<td align="left">C10FQ00</td>
<td align="left">Type 2 diabetes mellitus with exudative maculopathy</td>
</tr>
<tr>
<td align="left">C10FR00</td>
<td align="left">Type 2 diabetes mellitus with gastroparesis</td>
</tr>
</tbody>
</table>
<h4>Secondary care diagnoses (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//secondary_care/ICD_diabetes.csv'>ICD_diabetes.csv</a>)</h4>
<table>
<thead>
<tr>
<th>ICD-10 code</th>
<th>ICD-10 Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left">E10</td>
<td align="left">Insulin-dependent diabetes mellitus</td>
</tr>
<tr>
<td align="left">E11</td>
<td align="left">Non-insulin-dependent diabetes mellitus</td>
</tr>
<tr>
<td align="left">E12</td>
<td align="left">Malnutrition-related diabetes mellitus</td>
</tr>
<tr>
<td align="left">O242</td>
<td align="left">Diabetes mellitus in pregnancy: Pre-existing malnutrition-related diabetes mellitus</td>
</tr>
<tr>
<td align="left">E13</td>
<td align="left">Other specified diabetes mellitus</td>
</tr>
<tr>
<td align="left">E14</td>
<td align="left">Unspecified diabetes mellitus</td>
</tr>
<tr>
<td align="left">G590</td>
<td align="left">Diabetic mononeuropathy</td>
</tr>
<tr>
<td align="left">G632</td>
<td align="left">Diabetic polyneuropathy</td>
</tr>
<tr>
<td align="left">H280</td>
<td align="left">Diabetic cataract</td>
</tr>
<tr>
<td align="left">H360</td>
<td align="left">Diabetic retinopathy</td>
</tr>
<tr>
<td align="left">M142</td>
<td align="left">Diabetic arthropathy</td>
</tr>
<tr>
<td align="left">N083</td>
<td align="left">Glomerular disorders in diabetes mellitus</td>
</tr>
<tr>
<td align="left">O240</td>
<td align="left">Diabetes mellitus in pregnancy: Pre-existing diabetes mellitus, insulin-dependent</td>
</tr>
<tr>
<td align="left">O241</td>
<td align="left">Diabetes mellitus in pregnancy: Pre-existing diabetes mellitus, non-insulin-dependent</td>
</tr>
<tr>
<td align="left">O243</td>
<td align="left">Diabetes mellitus in pregnancy: Pre-existing diabetes mellitus, unspecified</td>
</tr>
</tbody>
</table>
<h2>Diabetic neurological complications</h2>
<h4>Implementation</h4>
~~~
At the specified date, a patient is defined as having had Diabetic neurological complications IF they meet the criteria for any of the following on or before the specified date. The earliest date on which the individual meets any of the following criteria on or before the specified date is defined as the first event date:
Primary care
1. Diabetic neurological complications diagnosis or history of diagnosis during a consultation
OR
Secondary care
1. ALL diagnoses of Diabetic neurological complications or history of diagnosis during a hospitalization
~~~
<h4>Primary care (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//primary_care/CPRD_dm_neuro.csv'>CPRD_dm_neuro.csv</a>)</h4>
<table>
<thead>
<tr>
<th>Read code</th>
<th>Read Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left">C106000</td>
<td align="left">Diabetes mellitus, juvenile, + neurological manifestation</td>
</tr>
<tr>
<td align="left">C106100</td>
<td align="left">Diabetes mellitus, adult onset, + neurological manifestation</td>
</tr>
<tr>
<td align="left">C106.00</td>
<td align="left">Diabetes mellitus with neurological manifestation</td>
</tr>
<tr>
<td align="left">C106.11</td>
<td align="left">Diabetic amyotrophy</td>
</tr>
<tr>
<td align="left">C106.12</td>
<td align="left">Diabetes mellitus with neuropathy</td>
</tr>
<tr>
<td align="left">C106.13</td>
<td align="left">Diabetes mellitus with polyneuropathy</td>
</tr>
<tr>
<td align="left">C106y00</td>
<td align="left">Other specified diabetes mellitus with neurological comps</td>
</tr>
<tr>
<td align="left">C106z00</td>
<td align="left">Diabetes mellitus NOS with neurological manifestation</td>
</tr>
<tr>
<td align="left">C108200</td>
<td align="left">Insulin-dependent diabetes mellitus with neurological comps</td>
</tr>
<tr>
<td align="left">C108211</td>
<td align="left">Type I diabetes mellitus with neurological complications</td>
</tr>
<tr>
<td align="left">C108212</td>
<td align="left">Type 1 diabetes mellitus with neurological complications</td>
</tr>
<tr>
<td align="left">C108B00</td>
<td align="left">Insulin dependent diabetes mellitus with mononeuropathy</td>
</tr>
<tr>
<td align="left">C108B11</td>
<td align="left">Type I diabetes mellitus with mononeuropathy</td>
</tr>
<tr>
<td align="left">C108C00</td>
<td align="left">Insulin dependent diabetes mellitus with polyneuropathy</td>
</tr>
<tr>
<td align="left">C108J00</td>
<td align="left">Insulin dependent diab mell with neuropathic arthropathy</td>
</tr>
<tr>
<td align="left">C108J11</td>
<td align="left">Type I diabetes mellitus with neuropathic arthropathy</td>
</tr>
<tr>
<td align="left">C108J12</td>
<td align="left">Type 1 diabetes mellitus with neuropathic arthropathy</td>
</tr>
<tr>
<td align="left">C109200</td>
<td align="left">Non-insulin-dependent diabetes mellitus with neuro comps</td>
</tr>
<tr>
<td align="left">C109211</td>
<td align="left">Type II diabetes mellitus with neurological complications</td>
</tr>
<tr>
<td align="left">C109212</td>
<td align="left">Type 2 diabetes mellitus with neurological complications</td>
</tr>
<tr>
<td align="left">C109A00</td>
<td align="left">Non-insulin dependent diabetes mellitus with mononeuropathy</td>
</tr>
<tr>
<td align="left">C109A11</td>
<td align="left">Type II diabetes mellitus with mononeuropathy</td>
</tr>
<tr>
<td align="left">C109B00</td>
<td align="left">Non-insulin dependent diabetes mellitus with polyneuropathy</td>
</tr>
<tr>
<td align="left">C109B11</td>
<td align="left">Type II diabetes mellitus with polyneuropathy</td>
</tr>
<tr>
<td align="left">C109B12</td>
<td align="left">Type 2 diabetes mellitus with polyneuropathy</td>
</tr>
<tr>
<td align="left">C109H00</td>
<td align="left">Non-insulin dependent d m with neuropathic arthropathy</td>
</tr>
<tr>
<td align="left">C109H11</td>
<td align="left">Type II diabetes mellitus with neuropathic arthropathy</td>
</tr>
<tr>
<td align="left">C109H12</td>
<td align="left">Type 2 diabetes mellitus with neuropathic arthropathy</td>
</tr>
<tr>
<td align="left">C10E200</td>
<td align="left">Type 1 diabetes mellitus with neurological complications</td>
</tr>
<tr>
<td align="left">C10E212</td>
<td align="left">Insulin-dependent diabetes mellitus with neurological comps</td>
</tr>
<tr>
<td align="left">C10EB00</td>
<td align="left">Type 1 diabetes mellitus with mononeuropathy</td>
</tr>
<tr>
<td align="left">C10EC00</td>
<td align="left">Type 1 diabetes mellitus with polyneuropathy</td>
</tr>
<tr>
<td align="left">C10EC11</td>
<td align="left">Type I diabetes mellitus with polyneuropathy</td>
</tr>
<tr>
<td align="left">C10EC12</td>
<td align="left">Insulin dependent diabetes mellitus with polyneuropathy</td>
</tr>
<tr>
<td align="left">C10EJ00</td>
<td align="left">Type 1 diabetes mellitus with neuropathic arthropathy</td>
</tr>
<tr>
<td align="left">C10F200</td>
<td align="left">Type 2 diabetes mellitus with neurological complications</td>
</tr>
<tr>
<td align="left">C10F211</td>
<td align="left">Type II diabetes mellitus with neurological complications</td>
</tr>
<tr>
<td align="left">C10FA00</td>
<td align="left">Type 2 diabetes mellitus with mononeuropathy</td>
</tr>
<tr>
<td align="left">C10FA11</td>
<td align="left">Type II diabetes mellitus with mononeuropathy</td>
</tr>
<tr>
<td align="left">C10FB00</td>
<td align="left">Type 2 diabetes mellitus with polyneuropathy</td>
</tr>
<tr>
<td align="left">C10FB11</td>
<td align="left">Type II diabetes mellitus with polyneuropathy</td>
</tr>
<tr>
<td align="left">C10FH00</td>
<td align="left">Type 2 diabetes mellitus with neuropathic arthropathy</td>
</tr>
<tr>
<td align="left">C10FH11</td>
<td align="left">Type II diabetes mellitus with neuropathic arthropathy</td>
</tr>
<tr>
<td align="left">F171100</td>
<td align="left">Autonomic neuropathy due to diabetes</td>
</tr>
<tr>
<td align="left">F345000</td>
<td align="left">Diabetic mononeuritis multiplex</td>
</tr>
<tr>
<td align="left">F35z000</td>
<td align="left">Diabetic mononeuritis NOS</td>
</tr>
<tr>
<td align="left">F372000</td>
<td align="left">Acute painful diabetic neuropathy</td>
</tr>
<tr>
<td align="left">F372100</td>
<td align="left">Chronic painful diabetic neuropathy</td>
</tr>
<tr>
<td align="left">F372200</td>
<td align="left">Asymptomatic diabetic neuropathy</td>
</tr>
<tr>
<td align="left">F372.00</td>
<td align="left">Polyneuropathy in diabetes</td>
</tr>
<tr>
<td align="left">F372.11</td>
<td align="left">Diabetic polyneuropathy</td>
</tr>
<tr>
<td align="left">F372.12</td>
<td align="left">Diabetic neuropathy</td>
</tr>
<tr>
<td align="left">F381300</td>
<td align="left">Myasthenic syndrome due to diabetic amyotrophy</td>
</tr>
<tr>
<td align="left">F381311</td>
<td align="left">Diabetic amyotrophy</td>
</tr>
<tr>
<td align="left">F3y0.00</td>
<td align="left">Diabetic mononeuropathy</td>
</tr>
<tr>
<td align="left">M271100</td>
<td align="left">Neuropathic diabetic ulcer - foot</td>
</tr>
</tbody>
</table>
<h4>Secondary care diagnoses (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//secondary_care/ICD_dm_neuro.csv'>ICD_dm_neuro.csv</a>)</h4>
<table>
<thead>
<tr>
<th>ICD-10 code</th>
<th>ICD-10 Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left">E10.4</td>
<td align="left">Insulin-dependent diabetes mellitus - With neurological complications</td>
</tr>
<tr>
<td align="left">E11.4</td>
<td align="left">Non-insulin-dependent diabetes mellitus - With neurological complications</td>
</tr>
<tr>
<td align="left">E12.4</td>
<td align="left">Malnutrition-related diabetes mellitus - With neurological complications</td>
</tr>
<tr>
<td align="left">E13.4</td>
<td align="left">Other specified diabetes mellitus - With neurological complications</td>
</tr>
<tr>
<td align="left">E14.4</td>
<td align="left">Unspecified diabetes mellitus - With neurological complications</td>
</tr>
<tr>
<td align="left">G59.0</td>
<td align="left">Diabetic mononeuropathy</td>
</tr>
<tr>
<td align="left">G63.2</td>
<td align="left">Diabetic polyneuropathy</td>
</tr>
</tbody>
</table>
<h2>Diabetic ophthalmic complications</h2>
<h4>Implementation</h4>
~~~
At the specified date, a patient is defined as having had Diabetic ophthalmic complications IF they meet the criteria for any of the following on or before the specified date. The earliest date on which the individual meets any of the following criteria on or before the specified date is defined as the first event date:
Primary care
1. Diabetic ophthalmic complications diagnosis or history of diagnosis during a consultation
OR
Secondary care
1. ALL diagnoses of Diabetic ophthalmic complications or history of diagnosis during a hospitalization
~~~
<h4>Primary care (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//primary_care/CPRD_diab_eye.csv'>CPRD_diab_eye.csv</a>)</h4>
<table>
<thead>
<tr>
<th>Read code</th>
<th>Read Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left">2BBk.00</td>
<td align="left">O/E - right eye stable treated prolif diabetic retinopathy</td>
</tr>
<tr>
<td align="left">2BBl.00</td>
<td align="left">O/E - left eye stable treated prolif diabetic retinopathy</td>
</tr>
<tr>
<td align="left">2BBL.00</td>
<td align="left">O/E - diabetic maculopathy present both eyes</td>
</tr>
<tr>
<td align="left">2BBM.00</td>
<td align="left">O/E - diabetic maculopathy absent both eyes</td>
</tr>
<tr>
<td align="left">2BBo.00</td>
<td align="left">O/E - sight threatening diabetic retinopathy</td>
</tr>
<tr>
<td align="left">2BBP.00</td>
<td align="left">O/E - right eye background diabetic retinopathy</td>
</tr>
<tr>
<td align="left">2BBQ.00</td>
<td align="left">O/E - left eye background diabetic retinopathy</td>
</tr>
<tr>
<td align="left">2BBr.00</td>
<td align="left">Impaired vision due to diabetic retinopathy</td>
</tr>
<tr>
<td align="left">2BBR.00</td>
<td align="left">O/E - right eye preproliferative diabetic retinopathy</td>
</tr>
<tr>
<td align="left">2BBS.00</td>
<td align="left">O/E - left eye preproliferative diabetic retinopathy</td>
</tr>
<tr>
<td align="left">2BBT.00</td>
<td align="left">O/E - right eye proliferative diabetic retinopathy</td>
</tr>
<tr>
<td align="left">2BBV.00</td>
<td align="left">O/E - left eye proliferative diabetic retinopathy</td>
</tr>
<tr>
<td align="left">2BBW.00</td>
<td align="left">O/E - right eye diabetic maculopathy</td>
</tr>
<tr>
<td align="left">2BBX.00</td>
<td align="left">O/E - left eye diabetic maculopathy</td>
</tr>
<tr>
<td align="left">7276.00</td>
<td align="left">Pan retinal photocoagulation for diabetes</td>
</tr>
<tr>
<td align="left">C105000</td>
<td align="left">Diabetes mellitus, juvenile type, + ophthalmic manifestation</td>
</tr>
<tr>
<td align="left">C105100</td>
<td align="left">Diabetes mellitus, adult onset, + ophthalmic manifestation</td>
</tr>
<tr>
<td align="left">C105.00</td>
<td align="left">Diabetes mellitus with ophthalmic manifestation</td>
</tr>
<tr>
<td align="left">C105y00</td>
<td align="left">Other specified diabetes mellitus with ophthalmic complicatn</td>
</tr>
<tr>
<td align="left">C105z00</td>
<td align="left">Diabetes mellitus NOS with ophthalmic manifestation</td>
</tr>
<tr>
<td align="left">C108100</td>
<td align="left">Insulin-dependent diabetes mellitus with ophthalmic comps</td>
</tr>
<tr>
<td align="left">C108112</td>
<td align="left">Type 1 diabetes mellitus with ophthalmic complications</td>
</tr>
<tr>
<td align="left">C108700</td>
<td align="left">Insulin dependent diabetes mellitus with retinopathy</td>
</tr>
<tr>
<td align="left">C108711</td>
<td align="left">Type I diabetes mellitus with retinopathy</td>
</tr>
<tr>
<td align="left">C108712</td>
<td align="left">Type 1 diabetes mellitus with retinopathy</td>
</tr>
<tr>
<td align="left">C108F00</td>
<td align="left">Insulin dependent diabetes mellitus with diabetic cataract</td>
</tr>
<tr>
<td align="left">C108F11</td>
<td align="left">Type I diabetes mellitus with diabetic cataract</td>
</tr>
<tr>
<td align="left">C108F12</td>
<td align="left">Type 1 diabetes mellitus with diabetic cataract</td>
</tr>
<tr>
<td align="left">C109100</td>
<td align="left">Non-insulin-dependent diabetes mellitus with ophthalm comps</td>
</tr>
<tr>
<td align="left">C109111</td>
<td align="left">Type II diabetes mellitus with ophthalmic complications</td>
</tr>
<tr>
<td align="left">C109112</td>
<td align="left">Type 2 diabetes mellitus with ophthalmic complications</td>
</tr>
<tr>
<td align="left">C109600</td>
<td align="left">Non-insulin-dependent diabetes mellitus with retinopathy</td>
</tr>
<tr>
<td align="left">C109611</td>
<td align="left">Type II diabetes mellitus with retinopathy</td>
</tr>
<tr>
<td align="left">C109612</td>
<td align="left">Type 2 diabetes mellitus with retinopathy</td>
</tr>
<tr>
<td align="left">C109E00</td>
<td align="left">Non-insulin depend diabetes mellitus with diabetic cataract</td>
</tr>
<tr>
<td align="left">C109E11</td>
<td align="left">Type II diabetes mellitus with diabetic cataract</td>
</tr>
<tr>
<td align="left">C109E12</td>
<td align="left">Type 2 diabetes mellitus with diabetic cataract</td>
</tr>
<tr>
<td align="left">C10E100</td>
<td align="left">Type 1 diabetes mellitus with ophthalmic complications</td>
</tr>
<tr>
<td align="left">C10E111</td>
<td align="left">Type I diabetes mellitus with ophthalmic complications</td>
</tr>
<tr>
<td align="left">C10E112</td>
<td align="left">Insulin-dependent diabetes mellitus with ophthalmic comps</td>
</tr>
<tr>
<td align="left">C10E700</td>
<td align="left">Type 1 diabetes mellitus with retinopathy</td>
</tr>
<tr>
<td align="left">C10E711</td>
<td align="left">Type I diabetes mellitus with retinopathy</td>
</tr>
<tr>
<td align="left">C10E712</td>
<td align="left">Insulin dependent diabetes mellitus with retinopathy</td>
</tr>
<tr>
<td align="left">C10EF00</td>
<td align="left">Type 1 diabetes mellitus with diabetic cataract</td>
</tr>
<tr>
<td align="left">C10EF12</td>
<td align="left">Insulin dependent diabetes mellitus with diabetic cataract</td>
</tr>
<tr>
<td align="left">C10EP00</td>
<td align="left">Type 1 diabetes mellitus with exudative maculopathy</td>
</tr>
<tr>
<td align="left">C10EP11</td>
<td align="left">Type I diabetes mellitus with exudative maculopathy</td>
</tr>
<tr>
<td align="left">C10F100</td>
<td align="left">Type 2 diabetes mellitus with ophthalmic complications</td>
</tr>
<tr>
<td align="left">C10F111</td>
<td align="left">Type II diabetes mellitus with ophthalmic complications</td>
</tr>
<tr>
<td align="left">C10F600</td>
<td align="left">Type 2 diabetes mellitus with retinopathy</td>
</tr>
<tr>
<td align="left">C10F611</td>
<td align="left">Type II diabetes mellitus with retinopathy</td>
</tr>
<tr>
<td align="left">C10FE00</td>
<td align="left">Type 2 diabetes mellitus with diabetic cataract</td>
</tr>
<tr>
<td align="left">C10FE11</td>
<td align="left">Type II diabetes mellitus with diabetic cataract</td>
</tr>
<tr>
<td align="left">C10FQ00</td>
<td align="left">Type 2 diabetes mellitus with exudative maculopathy</td>
</tr>
<tr>
<td align="left">F420000</td>
<td align="left">Background diabetic retinopathy</td>
</tr>
<tr>
<td align="left">F420100</td>
<td align="left">Proliferative diabetic retinopathy</td>
</tr>
<tr>
<td align="left">F420200</td>
<td align="left">Preproliferative diabetic retinopathy</td>
</tr>
<tr>
<td align="left">F420300</td>
<td align="left">Advanced diabetic maculopathy</td>
</tr>
<tr>
<td align="left">F420400</td>
<td align="left">Diabetic maculopathy</td>
</tr>
<tr>
<td align="left">F420500</td>
<td align="left">Advanced diabetic retinal disease</td>
</tr>
<tr>
<td align="left">F420600</td>
<td align="left">Non proliferative diabetic retinopathy</td>
</tr>
<tr>
<td align="left">F420700</td>
<td align="left">High risk proliferative diabetic retinopathy</td>
</tr>
<tr>
<td align="left">F420800</td>
<td align="left">High risk non proliferative diabetic retinopathy</td>
</tr>
<tr>
<td align="left">F420.00</td>
<td align="left">Diabetic retinopathy</td>
</tr>
<tr>
<td align="left">F420z00</td>
<td align="left">Diabetic retinopathy NOS</td>
</tr>
<tr>
<td align="left">F440700</td>
<td align="left">Diabetic iritis</td>
</tr>
<tr>
<td align="left">F464000</td>
<td align="left">Diabetic cataract</td>
</tr>
</tbody>
</table>
<h4>Secondary care diagnoses (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//secondary_care/ICD_diab_eye.csv'>ICD_diab_eye.csv</a>)</h4>
<table>
<thead>
<tr>
<th>ICD-10 code</th>
<th>ICD-10 Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left">H35.0</td>
<td align="left">Background retinopathy and retinal vascular changes</td>
</tr>
<tr>
<td align="left">H35.2</td>
<td align="left">Other proliferative retinopathy</td>
</tr>
<tr>
<td align="left">E10.3</td>
<td align="left">Insulin-dependent diabetes mellitus - With ophthalmic complications</td>
</tr>
<tr>
<td align="left">E11.3</td>
<td align="left">Non-insulin-dependent diabetes mellitus - With ophthalmic complications</td>
</tr>
<tr>
<td align="left">E12.3</td>
<td align="left">Malnutrition-related diabetes mellitus - With ophthalmic complications</td>
</tr>
<tr>
<td align="left">E13.3</td>
<td align="left">Other specified diabetes mellitus - With ophthalmic complications</td>
</tr>
<tr>
<td align="left">E14.3</td>
<td align="left">Unspecified diabetes mellitus - With ophthalmic complications</td>
</tr>
<tr>
<td align="left">H28.0</td>
<td align="left">Diabetic cataract</td>
</tr>
<tr>
<td align="left">H36.0</td>
<td align="left">Diabetic retinopathy</td>
</tr>
</tbody>
</table>
<h2>Diaphragmatic hernia</h2>
<h4>Implementation</h4>
~~~
At the specified date, a patient is defined as having had 'Diaphragmatic hernia' IF they meet the criteria for any of the following on or before the specified date. The earliest date on which the individual meets any of the following criteria on or before the specified date is defined as the first event date:
Primary care
1. 'Diaphragmatic hernia' diagnosis or history of diagnosis or procedure during a consultation
OR
Secondary care
1. ALL diagnoses of 'Diaphragmatic hernia' or history of diagnosis during a hospitalization
OR
Secondary care (OPCS4)
1. ALL procedures for 'Diaphragmatic hernia' during a hospitalization
~~~
<h4>Primary care (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//primary_care/CPRD_hernia_diaphragm.csv'>CPRD_hernia_diaphragm.csv</a>)</h4>
<table>
<thead>
<tr>
<th>Read code</th>
<th>Read Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left">760K011</td>
<td align="left">Allison repair of oesophageal hiatus hernia</td>
</tr>
<tr>
<td align="left">760K012</td>
<td align="left">Mason repair of oesophageal hiatus hernia</td>
</tr>
<tr>
<td align="left">760K100</td>
<td align="left">Repair of diaphragmatic hernia using thoracic approach NEC</td>
</tr>
<tr>
<td align="left">760K300</td>
<td align="left">Repair of diaphragmatic hernia using abdominal approach NEC</td>
</tr>
<tr>
<td align="left">760K400</td>
<td align="left">Boerema repair of hiatus hernia</td>
</tr>
<tr>
<td align="left">760K500</td>
<td align="left">Laparoscopic repair of hiatus hernia</td>
</tr>
<tr>
<td align="left">760K.00</td>
<td align="left">Repair of diaphragmatic hernia</td>
</tr>
<tr>
<td align="left">760K.11</td>
<td align="left">Repair of oesophageal hiatus hernia</td>
</tr>
<tr>
<td align="left">760K.12</td>
<td align="left">Repair of hiatus hernia</td>
</tr>
<tr>
<td align="left">760Ky00</td>
<td align="left">Other specified repair of diaphragmatic hernia</td>
</tr>
<tr>
<td align="left">760Kz00</td>
<td align="left">Repair of diaphragmatic hernia NOS</td>
</tr>
<tr>
<td align="left">760L312</td>
<td align="left">Hill repair of hiatus hernia and gastropexy</td>
</tr>
<tr>
<td align="left">J340.00</td>
<td align="left">Diaphragmatic hernia with gangrene</td>
</tr>
<tr>
<td align="left">J341.00</td>
<td align="left">Diaphragmatic hernia with obstruction</td>
</tr>
<tr>
<td align="left">J342.00</td>
<td align="left">Diaphragmatic hernia - irreducible</td>
</tr>
<tr>
<td align="left">J343.00</td>
<td align="left">Simple diaphragmatic hernia</td>
</tr>
<tr>
<td align="left">J344.00</td>
<td align="left">Hiatus hernia with gangrene</td>
</tr>
<tr>
<td align="left">J345.00</td>
<td align="left">Hiatus hernia with obstruction</td>
</tr>
<tr>
<td align="left">J346.00</td>
<td align="left">Hiatus hernia - irreducible</td>
</tr>
<tr>
<td align="left">J347.00</td>
<td align="left">Simple hiatus hernia</td>
</tr>
<tr>
<td align="left">J348.00</td>
<td align="left">Sliding hiatus hernia</td>
</tr>
<tr>
<td align="left">J34..00</td>
<td align="left">Diaphragmatic hernia</td>
</tr>
<tr>
<td align="left">J34..11</td>
<td align="left">Hiatus hernia</td>
</tr>
<tr>
<td align="left">J34..12</td>
<td align="left">Parasternal hernia</td>
</tr>
<tr>
<td align="left">J34..13</td>
<td align="left">Retrosternal hernia</td>
</tr>
<tr>
<td align="left">J34y.00</td>
<td align="left">Unspecified diaphragmatic hernia</td>
</tr>
</tbody>
</table>
<h4>Secondary care diagnoses (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//secondary_care/ICD_hernia_diaphragm.csv'>ICD_hernia_diaphragm.csv</a>)</h4>
<table>
<thead>
<tr>
<th>ICD-10 code</th>
<th>ICD-10 Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left">K44</td>
<td align="left">Diaphragmatic hernia</td>
</tr>
</tbody>
</table>
<h4>Secondary care procedures (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//secondary_care/OPCS_hernia_diaphragm.csv'>OPCS_hernia_diaphragm.csv</a>)</h4>
<table>
<thead>
<tr>
<th>OPCS-4 code</th>
<th>OPCS-4 Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left">G23</td>
<td align="left">Repair of diaphragmatic hernia</td>
</tr>
<tr>
<td align="left">G23.1</td>
<td align="left">Repair of oesophageal hiatus using thoracic approach</td>
</tr>
<tr>
<td align="left">G23.2</td>
<td align="left">Repair of diaphragmatic hernia using thoracic approach NEC</td>
</tr>
<tr>
<td align="left">G23.3</td>
<td align="left">Repair of oesophageal hiatus using abdominal approach</td>
</tr>
<tr>
<td align="left">G23.4</td>
<td align="left">Repair of diaphragmatic hernia using abdominal approach NEC</td>
</tr>
<tr>
<td align="left">G23.8</td>
<td align="left">Other specified repair of diaphragmatic hernia</td>
</tr>
<tr>
<td align="left">G23.9</td>
<td align="left">Unspecified repair of diaphragmatic hernia</td>
</tr>
</tbody>
</table>
<h2>Dilated cardiomyopathy</h2>
<h4>Implementation</h4>
~~~
At the specified date, a patient is defined as having had 'Dilated cardiomyopathy' IF they meet the criteria for any of the following on or before the specified date. The earliest date on which the individual meets any of the following criteria on or before the specified date is defined as the first event date:
Primary care
1. 'Dilated cardiomyopathy' diagnosis or history of diagnosis during a consultation
OR
Secondary care (ICD10)
1. ALL diagnoses of 'Dilated cardiomyopathy' or history of diagnosis during a hospitalization
~~~
<h4>Primary care (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//primary_care/CPRD_dcm.csv'>CPRD_dcm.csv</a>)</h4>
<table>
<thead>
<tr>
<th>Read code</th>
<th>Read Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left">G554000</td>
<td align="left">Congestive cardiomyopathy</td>
</tr>
<tr>
<td align="left">G554400</td>
<td align="left">Primary dilated cardiomyopathy</td>
</tr>
<tr>
<td align="left">G555.00</td>
<td align="left">Alcoholic cardiomyopathy</td>
</tr>
<tr>
<td align="left">G55y.11</td>
<td align="left">Secondary dilated cardiomyopathy</td>
</tr>
</tbody>
</table>
<h4>Secondary care diagnoses (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//secondary_care/ICD_dcm.csv'>ICD_dcm.csv</a>)</h4>
<table>
<thead>
<tr>
<th>ICD-10 code</th>
<th>ICD-10 Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left">I42.0</td>
<td align="left">Dilated cardiomyopathy</td>
</tr>
<tr>
<td align="left">I42.6</td>
<td align="left">Alcoholic cardiomyopathy</td>
</tr>
</tbody>
</table>
<h2>Disorders of autonomic nervous system</h2>
<h4>Implementation</h4>
~~~
At the specified date, a patient is defined as having had a Disorder of the autonomic nervous system IF they meet the criteria for any of the following on or before the specified date. The earliest date on which the individual meets any of the following criteria on or before the specified date is defined as the first event date:
Primary care
1. Disorder of the autonomic nervous system diagnosis or history of diagnosis during a consultation
OR
Secondary care
1. ALL diagnoses of Disorder of the autonomic nervous system or history of diagnosis during a hospitalization
~~~
<h4>Primary care (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//primary_care/CPRD_autonomic_neuro.csv'>CPRD_autonomic_neuro.csv</a>)</h4>
<table>
<thead>
<tr>
<th>Read code</th>
<th>Read Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left">2BE3.00</td>
<td align="left">O/E - Horner's syndrome</td>
</tr>
<tr>
<td align="left">F170000</td>
<td align="left">Carotid sinus syndrome</td>
</tr>
<tr>
<td align="left">F170100</td>
<td align="left">Cervical sympathetic paralysis</td>
</tr>
<tr>
<td align="left">F170.00</td>
<td align="left">Idiopathic peripheral autonomic neuropathy</td>
</tr>
<tr>
<td align="left">F170z00</td>
<td align="left">Idiopathic peripheral autonomic neuropathy NOS</td>
</tr>
<tr>
<td align="left">F171000</td>
<td align="left">Autonomic neuropathy due to amyloid</td>
</tr>
<tr>
<td align="left">F171100</td>
<td align="left">Autonomic neuropathy due to diabetes</td>
</tr>
<tr>
<td align="left">F171.00</td>
<td align="left">Peripheral autonomic neuropathy disease EC</td>
</tr>
<tr>
<td align="left">F171z00</td>
<td align="left">Peripheral autonomic neuropathy due to disease NOS</td>
</tr>
<tr>
<td align="left">F172.00</td>
<td align="left">[X] Horners syndrome</td>
</tr>
<tr>
<td align="left">F173.00</td>
<td align="left">Shoulder-hand syndrome</td>
</tr>
<tr>
<td align="left">F175.00</td>
<td align="left">Autonomic dysreflexia</td>
</tr>
<tr>
<td align="left">F17..00</td>
<td align="left">Autonomic nervous system disorders</td>
</tr>
<tr>
<td align="left">F17z.00</td>
<td align="left">Autonomic nervous system disorder NOS</td>
</tr>
<tr>
<td align="left">F17z.11</td>
<td align="left">Horner's syndrome</td>
</tr>
<tr>
<td align="left">F17z.12</td>
<td align="left">Autonomic failure</td>
</tr>
<tr>
<td align="left">F347.00</td>
<td align="left">Complex regional pain syndrome type II</td>
</tr>
<tr>
<td align="left">F369.00</td>
<td align="left">Complex regional pain syndrome</td>
</tr>
<tr>
<td align="left">FyuAC00</td>
<td align="left">[X]Autonomic neuropathy/endocrine+metabolic diseases CE</td>
</tr>
<tr>
<td align="left">FyuAD00</td>
<td align="left">[X]Other disordrs/autonomic nervous system/other diseases CE</td>
</tr>
<tr>
<td align="left">N337100</td>
<td align="left">Sudek's atrophy</td>
</tr>
<tr>
<td align="left">N337111</td>
<td align="left">Reflex sympathetic dystrophy</td>
</tr>
<tr>
<td align="left">N337200</td>
<td align="left">Algodystrophy of hand</td>
</tr>
<tr>
<td align="left">N337300</td>
<td align="left">Algodystrophy of knee</td>
</tr>
<tr>
<td align="left">N337400</td>
<td align="left">Algodystrophy of foot</td>
</tr>
<tr>
<td align="left">N337.00</td>
<td align="left">Algoneurodystrophy</td>
</tr>
<tr>
<td align="left">N337.11</td>
<td align="left">Algodystrophy</td>
</tr>
<tr>
<td align="left">N337.12</td>
<td align="left">Reflex sympathetic dystrophy</td>
</tr>
<tr>
<td align="left">N337z00</td>
<td align="left">Algoneurodystrophy NOS</td>
</tr>
<tr>
<td align="left">N33C.00</td>
<td align="left">Complex regional pain syndrome type I</td>
</tr>
<tr>
<td align="left">P2x2.00</td>
<td align="left">Familial dysautonomia</td>
</tr>
<tr>
<td align="left">P2x5.00</td>
<td align="left">Riley - Day syndrome</td>
</tr>
</tbody>
</table>
<h4>Secondary care diagnoses (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//secondary_care/ICD_autonomic_neuro.csv'>ICD_autonomic_neuro.csv</a>)</h4>
<table>
<thead>
<tr>
<th>ICD-10 code</th>
<th>ICD-10 Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left">G90</td>
<td align="left">Disorders of autonomic nervous system</td>
</tr>
<tr>
<td align="left">G99.0</td>
<td align="left">Autonomic neuropathy in endocrine and metabolic diseases</td>
</tr>
<tr>
<td align="left">G99.1</td>
<td align="left">Other disorders of autonomic nervous system in other diseases classified elsewhere</td>
</tr>
<tr>
<td align="left">M89.0</td>
<td align="left">Algoneurodystrophy</td>
</tr>
</tbody>
</table>
<h2>Diverticular disease of intestine (acute and chronic)</h2>
<h4>Implementation</h4>
~~~
At the specified date, a patient is defined as having had 'Diverticular disease of intestine (acute and chronic)' of intestine (acute and chronic) IF they meet the criteria for any of the following on or before the specified date. The earliest date on which the individual meets any of the following criteria on or before the specified date is defined as the first event date:
Primary care
1. 'Diverticular disease of intestine (acute and chronic)' of intestine (acute and chronic) diagnosis or history of diagnosis or procedure during a consultation
OR
Secondary care
1. ALL diagnoses of 'Diverticular disease of intestine (acute and chronic)' of intestine (acute and chronic) or history of diagnosis during a hospitalization
OR
Secondary care (OPCS4)
1. ALL procedures for 'Diverticular disease of intestine (acute and chronic)' of intestine (acute and chronic) during a hospitalization
~~~
<h4>Primary care (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//primary_care/CPRD_diverticuli.csv'>CPRD_diverticuli.csv</a>)</h4>
<table>
<thead>
<tr>
<th>Read code</th>
<th>Read Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="right">7718000</td>
<td align="left">Excision of diverticulum of colon</td>
</tr>
<tr>
<td align="left">J23z300</td>
<td align="left">Appendicular diverticulum</td>
</tr>
<tr>
<td align="left">J510000</td>
<td align="left">Diverticulosis of the duodenum</td>
</tr>
<tr>
<td align="left">J510100</td>
<td align="left">Diverticulosis of the jejunum</td>
</tr>
<tr>
<td align="left">J510200</td>
<td align="left">Diverticulosis of the ileum</td>
</tr>
<tr>
<td align="left">J510300</td>
<td align="left">Diverticulosis of the small intestine unspecified</td>
</tr>
<tr>
<td align="left">J510400</td>
<td align="left">Diverticulosis of the small intestine NOS</td>
</tr>
<tr>
<td align="left">J510500</td>
<td align="left">Diverticulosis of the colon</td>
</tr>
<tr>
<td align="left">J510600</td>
<td align="left">Diverticulosis of the large intestine unspecified</td>
</tr>
<tr>
<td align="left">J510700</td>
<td align="left">Diverticulosis of the large intestine NOS</td>
</tr>
<tr>
<td align="left">J510800</td>
<td align="left">Divertic dis/both sml+lge intestin without perfor or abscess</td>
</tr>
<tr>
<td align="left">J510900</td>
<td align="left">Bleeding diverticulosis</td>
</tr>
<tr>
<td align="left">J510.00</td>
<td align="left">Diverticulosis</td>
</tr>
<tr>
<td align="left">J510y00</td>
<td align="left">Diverticulosis unspecified</td>
</tr>
<tr>
<td align="left">J510z00</td>
<td align="left">Diverticulosis NOS</td>
</tr>
<tr>
<td align="left">J511000</td>
<td align="left">Diverticulitis of the duodenum</td>
</tr>
<tr>
<td align="left">J511100</td>
<td align="left">Diverticulitis of the jejunum</td>
</tr>
<tr>
<td align="left">J511200</td>
<td align="left">Diverticulitis of the ileum</td>
</tr>
<tr>
<td align="left">J511300</td>
<td align="left">Diverticulitis of the small intestine unspecified</td>
</tr>
<tr>
<td align="left">J511400</td>
<td align="left">Diverticulitis of the small intestine NOS</td>
</tr>
<tr>
<td align="left">J511500</td>
<td align="left">Diverticulitis of the colon</td>
</tr>
<tr>
<td align="left">J511600</td>
<td align="left">Diverticulitis of the large intestine unspecified</td>
</tr>
<tr>
<td align="left">J511700</td>
<td align="left">Diverticulitis of the large intestine NOS</td>
</tr>
<tr>
<td align="left">J511.00</td>
<td align="left">Diverticulitis</td>
</tr>
<tr>
<td align="left">J511y00</td>
<td align="left">Diverticulitis unspecified</td>
</tr>
<tr>
<td align="left">J511z00</td>
<td align="left">Diverticulitis NOS</td>
</tr>
<tr>
<td align="left">J512000</td>
<td align="left">Perforated diverticulum of duodenum</td>
</tr>
<tr>
<td align="left">J512100</td>
<td align="left">Perforated diverticulum of jejunum</td>
</tr>
<tr>
<td align="left">J512200</td>
<td align="left">Perforated diverticulum of ileum</td>
</tr>
<tr>
<td align="left">J512300</td>
<td align="left">Perforated diverticulum of small intestine unspecified</td>
</tr>
<tr>
<td align="left">J512400</td>
<td align="left">Perforated diverticulum of small intestine NOS</td>
</tr>
<tr>
<td align="left">J512500</td>
<td align="left">Perforated diverticulum of colon</td>
</tr>
<tr>
<td align="left">J512600</td>
<td align="left">Perforated diverticulum of large intestine unspecified</td>
</tr>
<tr>
<td align="left">J512700</td>
<td align="left">Perforated diverticulum of large intestine NOS</td>
</tr>
<tr>
<td align="left">J512800</td>
<td align="left">Divertic disease/both sml+lge intestin with perforat+abscess</td>
</tr>
<tr>
<td align="left">J512.00</td>
<td align="left">Perforated diverticulum</td>
</tr>
<tr>
<td align="left">J512y00</td>
<td align="left">Perforated diverticulum unspecified</td>
</tr>
<tr>
<td align="left">J512z00</td>
<td align="left">Perforated diverticulum of intestine NOS</td>
</tr>
<tr>
<td align="left">J513.00</td>
<td align="left">Diverticular abscess</td>
</tr>
<tr>
<td align="left">J51..00</td>
<td align="left">Diverticula of intestine</td>
</tr>
<tr>
<td align="left">J51..11</td>
<td align="left">Diverticular disease</td>
</tr>
<tr>
<td align="left">J51z.00</td>
<td align="left">Diverticula of the intestine NOS</td>
</tr>
</tbody>
</table>
<h4>Secondary care diagnoses (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//secondary_care/ICD_diverticuli.csv'>ICD_diverticuli.csv</a>)</h4>
<table>
<thead>
<tr>
<th>ICD-10 code</th>
<th>ICD-10 Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left">K38.2</td>
<td align="left">Diverticulum of appendix</td>
</tr>
<tr>
<td align="left">K57</td>
<td align="left">Diverticular disease of intestine</td>
</tr>
</tbody>
</table>
<h4>Secondary care procedures (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//secondary_care/OPCS_diverticuli.csv'>OPCS_diverticuli.csv</a>)</h4>
<table>
<thead>
<tr>
<th>OPCS-4 code</th>
<th>OPCS-4 Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left">H12.1</td>
<td align="left">Excision of diverticulum of colon</td>
</tr>
</tbody>
</table>
<h2>Down's syndrome</h2>
<h4>Implementation</h4>
~~~
At the specified date, a patient is defined as having had Down's syndrome IF they meet the criteria for any of the following on or before the specified date. The earliest date on which the individual meets any of the following criteria on or before the specified date is defined as the first event date:
Primary care
1. Down's syndrome diagnosis or history of diagnosis during a consultation
OR
Secondary care (ICD10)
1. ALL diagnoses of Down's syndrome or history of diagnosis during a hospitalization
~~~
<h4>Primary care (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//primary_care/CPRD_downs.csv'>CPRD_downs.csv</a>)</h4>
<table>
<thead>
<tr>
<th>Read code</th>
<th>Read Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left">PJ00.00</td>
<td align="left">Trisomy 21, meiotic nondisjunction</td>
</tr>
<tr>
<td align="left">PJ01.00</td>
<td align="left">Trisomy 21, mosaicism</td>
</tr>
<tr>
<td align="left">PJ01.11</td>
<td align="left">Trisomy 21, mitotic nondisjunction</td>
</tr>
<tr>
<td align="left">PJ02.00</td>
<td align="left">Trisomy 21, translocation</td>
</tr>
<tr>
<td align="left">PJ02.11</td>
<td align="left">Partial trisomy 21 in Down's syndrome</td>
</tr>
<tr>
<td align="left">PJ0..00</td>
<td align="left">Down's syndrome - trisomy 21</td>
</tr>
<tr>
<td align="left">PJ0..11</td>
<td align="left">Mongolism</td>
</tr>
<tr>
<td align="left">PJ0..12</td>
<td align="left">Trisomy 21</td>
</tr>
<tr>
<td align="left">PJ0z.00</td>
<td align="left">Down's syndrome NOS</td>
</tr>
<tr>
<td align="left">PJ0z.11</td>
<td align="left">Trisomy 21 NOS</td>
</tr>
</tbody>
</table>
<h4>Secondary care diagnoses (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//secondary_care/ICD_downs.csv'>ICD_downs.csv</a>)</h4>
<table>
<thead>
<tr>
<th>ICD-10 code</th>
<th>ICD-10 Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left">Q90</td>
<td align="left">Down's syndrome</td>
</tr>
</tbody>
</table>
<h2>Dysmenorrhoea</h2>
<h4>Implementation</h4>
~~~
At the specified date, a patient is defined as having had 'Dysmenorrhoea' IF they meet the criteria for any of the following on or before the specified date. The earliest date on which the individual meets any of the following criteria on or before the specified date is defined as the first event date:
Primary care
1. 'Dysmenorrhoea' diagnosis or history of diagnosis during a consultation
OR
Secondary care
1. ALL diagnoses of 'Dysmenorrhoea' or history of diagnosis during a hospitalization
~~~
<h4>Primary care (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//primary_care/CPRD_dysmenorrhoea.csv'>CPRD_dysmenorrhoea.csv</a>)</h4>
<table>
<thead>
<tr>
<th>Read code</th>
<th>Read Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="right">1574</td>
<td align="left">H/O: dysmenorrhoea</td>
</tr>
<tr>
<td align="right">1574.1</td>
<td align="left">H/O: painful periods</td>
</tr>
<tr>
<td align="left">Eu45y11</td>
<td align="left">[X]Psychogenic dysmenorrhoea</td>
</tr>
<tr>
<td align="left">K583000</td>
<td align="left">Primary dysmenorrhoea</td>
</tr>
<tr>
<td align="left">K583100</td>
<td align="left">Secondary dysmenorrhoea</td>
</tr>
<tr>
<td align="left">K583.00</td>
<td align="left">Dysmenorrhoea</td>
</tr>
<tr>
<td align="left">K583.11</td>
<td align="left">Painful menorrhoea</td>
</tr>
<tr>
<td align="left">K583.12</td>
<td align="left">Painful menstruation</td>
</tr>
<tr>
<td align="left">K583.13</td>
<td align="left">Period pains</td>
</tr>
<tr>
<td align="left">K583.14</td>
<td align="left">Spasmodic dysmenorrhoea</td>
</tr>
</tbody>
</table>
<h4>Secondary care diagnoses (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//secondary_care/ICD_dysmenorrhoea.csv'>ICD_dysmenorrhoea.csv</a>)</h4>
<table>
<thead>
<tr>
<th>ICD-10 code</th>
<th>ICD-10 Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left">N94.4</td>
<td align="left">Primary dysmenorrhoea</td>
</tr>
<tr>
<td align="left">N94.5</td>
<td align="left">Secondary dysmenorrhoea</td>
</tr>
<tr>
<td align="left">N94.6</td>
<td align="left">Dysmenorrhoea, unspecified</td>
</tr>
</tbody>
</table>
<h2>Ear and Upper Respiratory Tract Infections</h2>
<h4>Implementation</h4>
~~~
At the specified date, a patient is defined as having had Ear and Upper Respiratory Tract Infections IF they meet the criteria for any of the following on or before the specified date. The earliest date on which the individual meets any of the following criteria on or before the specified date is defined as the first event date:
Secondary care
1. ALL diagnoses of Ear and Upper Respiratory Tract Infections or history of diagnosis during a hospitalization
~~~
<h4>Secondary care diagnoses (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//secondary_care/ICD_ear_urti.csv'>ICD_ear_urti.csv</a>)</h4>
<table>
<thead>
<tr>
<th>ICD-10 code</th>
<th>ICD-10 Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left">A18.6</td>
<td align="left">Tuberculosis of ear</td>
</tr>
<tr>
<td align="left">A36.0</td>
<td align="left">Pharyngeal diphtheria</td>
</tr>
<tr>
<td align="left">A36.1</td>
<td align="left">Nasopharyngeal diphtheria</td>
</tr>
<tr>
<td align="left">A36.2</td>
<td align="left">Laryngeal diphtheria</td>
</tr>
<tr>
<td align="left">A54.5</td>
<td align="left">Gonococcal pharyngitis</td>
</tr>
<tr>
<td align="left">A56.4</td>
<td align="left">Chlamydial infection of pharynx</td>
</tr>
<tr>
<td align="left">B05.3</td>
<td align="left">Measles complicated by otitis media</td>
</tr>
<tr>
<td align="left">B27</td>
<td align="left">Infectious mononucleosis</td>
</tr>
<tr>
<td align="left">B44.2</td>
<td align="left">Tonsillar aspergillosis</td>
</tr>
<tr>
<td align="left">B87.3</td>
<td align="left">Nasopharyngeal myiasis</td>
</tr>
<tr>
<td align="left">B87.4</td>
<td align="left">Aural myiasis</td>
</tr>
<tr>
<td align="left">H60</td>
<td align="left">Otitis externa</td>
</tr>
<tr>
<td align="left">H62.0</td>
<td align="left">Otitis externa in bacterial diseases classified elsewhere</td>
</tr>
<tr>
<td align="left">H62.1</td>
<td align="left">Otitis externa in viral diseases classified elsewhere</td>
</tr>
<tr>
<td align="left">H62.2</td>
<td align="left">Otitis externa in mycoses</td>
</tr>
<tr>
<td align="left">H62.3</td>
<td align="left">Otitis externa in other infectious and parasitic diseases classified elsewhere</td>
</tr>
<tr>
<td align="left">H62.4</td>
<td align="left">Otitis externa in other diseases classified elsewhere</td>
</tr>
<tr>
<td align="left">H65</td>
<td align="left">Nonsuppurative otitis media</td>
</tr>
<tr>
<td align="left">H66</td>
<td align="left">Suppurative and unspecified otitis media</td>
</tr>
<tr>
<td align="left">H67</td>
<td align="left">Otitis media in diseases classified elsewhere</td>
</tr>
<tr>
<td align="left">H70</td>
<td align="left">Mastoiditis and related conditions</td>
</tr>
<tr>
<td align="left">H73.0</td>
<td align="left">Acute myringitis</td>
</tr>
<tr>
<td align="left">H73.1</td>
<td align="left">Chronic myringitis</td>
</tr>
<tr>
<td align="left">H75.0</td>
<td align="left">Mastoiditis in infectious and parasitic diseases classified elsewhere</td>
</tr>
<tr>
<td align="left">J00</td>
<td align="left">Acute nasopharyngitis [common cold]</td>
</tr>
<tr>
<td align="left">J01</td>
<td align="left">Acute sinusitis</td>
</tr>
<tr>
<td align="left">J02</td>
<td align="left">Acute pharyngitis</td>
</tr>
<tr>
<td align="left">J03</td>
<td align="left">Acute tonsillitis</td>
</tr>
<tr>
<td align="left">J04</td>
<td align="left">Acute laryngitis and tracheitis</td>
</tr>
<tr>
<td align="left">J05</td>
<td align="left">Acute obstructive laryngitis [croup] and epiglottitis</td>
</tr>
<tr>
<td align="left">J06</td>
<td align="left">Acute upper respiratory infections of multiple and unspecified sites</td>
</tr>
<tr>
<td align="left">J34.0</td>
<td align="left">Abscess, furuncle and carbuncle of nose</td>
</tr>
<tr>
<td align="left">J36</td>
<td align="left">Peritonsillar abscess</td>
</tr>
<tr>
<td align="left">J37</td>
<td align="left">Chronic laryngitis and laryngotracheitis</td>
</tr>
<tr>
<td align="left">J39.0</td>
<td align="left">Retropharyngeal and parapharyngeal abscess</td>
</tr>
<tr>
<td align="left">J39.1</td>
<td align="left">Other abscess of pharynx</td>
</tr>
</tbody>
</table>
<h2>Encephalitis</h2>
<h4>Implementation</h4>
~~~
At the specified date, a patient is defined as having had 'Encephalitis' IF they meet the criteria for any of the following on or before the specified date. The earliest date on which the individual meets any of the following criteria on or before the specified date is defined as the first event date:
Secondary care
1. ALL diagnoses of 'Encephalitis' or history of diagnosis during a hospitalization
~~~
<h4>Secondary care diagnoses (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//secondary_care/ICD_enceph.csv'>ICD_enceph.csv</a>)</h4>
<table>
<thead>
<tr>
<th>ICD-10 code</th>
<th>ICD-10 Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left">A83</td>
<td align="left">Mosquito-borne viral encephalitis</td>
</tr>
<tr>
<td align="left">A84</td>
<td align="left">Tick-borne viral encephalitis</td>
</tr>
<tr>
<td align="left">A85</td>
<td align="left">Other viral encephalitis, not elsewhere classified</td>
</tr>
<tr>
<td align="left">A86</td>
<td align="left">Unspecified viral encephalitis</td>
</tr>
<tr>
<td align="left">B00.4</td>
<td align="left">Herpesviral encephalitis</td>
</tr>
<tr>
<td align="left">B01.1</td>
<td align="left">Varicella encephalitis</td>
</tr>
<tr>
<td align="left">B02.0</td>
<td align="left">Zoster encephalitis</td>
</tr>
<tr>
<td align="left">B05.0</td>
<td align="left">Measles complicated by encephalitis</td>
</tr>
<tr>
<td align="left">B26.2</td>
<td align="left">Mumps encephalitis</td>
</tr>
<tr>
<td align="left">B94.1</td>
<td align="left">Sequelae of viral encephalitis</td>
</tr>
</tbody>
</table>
<h2>End stage renal disease</h2>
<h4>Implementation</h4>
~~~
At the specified date, a patient is defined as having had 'End stage renal disease' IF they meet the criteria for any of the following on or before the specified date. The earliest date on which the individual meets any of the following criteria on or before the specified date is defined as the first event date:
Primary care
1. 'End stage renal disease' diagnosis or history of diagnosis or procedure during a consultation
OR
2. Meets the following criteria (definitions as for CKD):
IF egfr_ckdepi recorded on or before specified date, THEN
IF egfr_ckdepi <15 ml/min on the most recent date (index date) before the specified date
AND
IF egfr_ckdepi <15 ml/min on any date greater than 90 days BEFORE the index date above
THEN classify as having ESRD
Secondary care
1. ALL diagnoses of 'End stage renal disease' or history of diagnosis or procedure during a hospitalization
Secondary care (OPCS4)
1. ALL procedures for 'End stage renal disease' during a hospitalization
~~~
<h4>Primary care (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//primary_care/CPRD_ESRD.csv'>CPRD_ESRD.csv</a>)</h4>
<table>
<thead>
<tr>
<th>Read code</th>
<th>Read Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left">14S2.00</td>
<td align="left">H/O: kidney recipient</td>
</tr>
<tr>
<td align="left">14V2.00</td>
<td align="left">H/O: renal dialysis</td>
</tr>
<tr>
<td align="left">14V2.11</td>
<td align="left">H/O: kidney dialysis</td>
</tr>
<tr>
<td align="left">1Z14.00</td>
<td align="left">Chronic kidney disease stage 5</td>
</tr>
<tr>
<td align="left">1Z1K.00</td>
<td align="left">Chronic kidney disease stage 5 with proteinuria</td>
</tr>
<tr>
<td align="left">1Z1L.00</td>
<td align="left">Chronic kidney disease stage 5 without proteinuria</td>
</tr>
<tr>
<td align="left">1Z1L.11</td>
<td align="left">CKD stage 5 without proteinuria</td>
</tr>
<tr>
<td align="left">4I29.00</td>
<td align="left">Peritoneal dialysis sample</td>
</tr>
<tr>
<td align="left">4N0..00</td>
<td align="left">Dialysis fluid urea level</td>
</tr>
<tr>
<td align="left">4N2..00</td>
<td align="left">Dialysis fluid glucose level</td>
</tr>
<tr>
<td align="left">7B00100</td>
<td align="left">Transplantation of kidney from live donor</td>
</tr>
<tr>
<td align="left">7B00111</td>
<td align="left">Allotransplantation of kidney from live donor</td>
</tr>
<tr>
<td align="left">7B00200</td>
<td align="left">Transplantation of kidney from cadaver</td>
</tr>
<tr>
<td align="left">7B00211</td>
<td align="left">Allotransplantation of kidney from cadaver</td>
</tr>
<tr>
<td align="left">7B00212</td>
<td align="left">Cadaveric renal transplant</td>
</tr>
<tr>
<td align="left">7B00300</td>
<td align="left">Allotransplantation of kidney from cadaver, heart-beating</td>
</tr>
<tr>
<td align="left">7B00400</td>
<td align="left">Allotransplantation kidney from cadaver, heart non-beating</td>
</tr>
<tr>
<td align="left">7B00500</td>
<td align="left">Allotransplantation of kidney from cadaver NEC</td>
</tr>
<tr>
<td align="left">7B00.00</td>
<td align="left">Transplantation of kidney</td>
</tr>
<tr>
<td align="left">7B00y00</td>
<td align="left">Other specified transplantation of kidney</td>
</tr>
<tr>
<td align="left">7B00z00</td>
<td align="left">Transplantation of kidney NOS</td>
</tr>
<tr>
<td align="left">7B01511</td>
<td align="left">Excision of rejected transplanted kidney</td>
</tr>
<tr>
<td align="left">7B06300</td>
<td align="left">Exploration of renal transplant</td>
</tr>
<tr>
<td align="left">7B0F300</td>
<td align="left">Post-transplantation of kidney examination, recipient</td>
</tr>
<tr>
<td align="left">7B0F.00</td>
<td align="left">Interventions associated with transplantation of kidney</td>
</tr>
<tr>
<td align="left">7B0Fy00</td>
<td align="left">OS interventions associated with transplantation of kidney</td>
</tr>
<tr>
<td align="left">7B0Fz00</td>
<td align="left">Interventions associated with transplantation of kidney NOS</td>
</tr>
<tr>
<td align="left">7L1A000</td>
<td align="left">Renal dialysis</td>
</tr>
<tr>
<td align="left">7L1A011</td>
<td align="left">Thomas intravascular shunt for dialysis</td>
</tr>
<tr>
<td align="left">7L1A100</td>
<td align="left">Peritoneal dialysis</td>
</tr>
<tr>
<td align="left">7L1A200</td>
<td align="left">Haemodialysis NEC</td>
</tr>
<tr>
<td align="left">7L1A400</td>
<td align="left">Automated peritoneal dialysis</td>
</tr>
<tr>
<td align="left">7L1A500</td>
<td align="left">Continuous ambulatory peritoneal dialysis</td>
</tr>
<tr>
<td align="left">7L1A600</td>
<td align="left">Peritoneal dialysis NEC</td>
</tr>
<tr>
<td align="left">7L1A.11</td>
<td align="left">Dialysis for renal failure</td>
</tr>
<tr>
<td align="left">7L1B000</td>
<td align="left">Insertion of ambulatory peritoneal dialysis catheter</td>
</tr>
<tr>
<td align="left">7L1B100</td>
<td align="left">Removal of ambulatory peritoneal dialysis catheter</td>
</tr>
<tr>
<td align="left">7L1B200</td>
<td align="left">Flushing of peritoneal dialysis catheter</td>
</tr>
<tr>
<td align="left">7L1B.11</td>
<td align="left">Placement ambulatory dialysis apparatus - compens renal fail</td>
</tr>
<tr>
<td align="left">7L1C000</td>
<td align="left">Insertion of temporary peritoneal dialysis catheter</td>
</tr>
<tr>
<td align="left">8882.00</td>
<td align="left">Intestinal dialysis</td>
</tr>
<tr>
<td align="left">G72C.00</td>
<td align="left">Ruptured aneurysm of dialysis vascular access</td>
</tr>
<tr>
<td align="left">G72D000</td>
<td align="left">Aneurysm of superficialised artery of dialysis AV fistula</td>
</tr>
<tr>
<td align="left">G72D100</td>
<td align="left">Aneurysm of needle site of dialysis arteriovenous fistula</td>
</tr>
<tr>
<td align="left">G72D200</td>
<td align="left">Aneurysm of anastomotic site of dialysis AV fistula</td>
</tr>
<tr>
<td align="left">G72D.00</td>
<td align="left">Aneurysm of dialysis arteriovenous fistula</td>
</tr>
<tr>
<td align="left">Gy10.00</td>
<td align="left">Stenosis of dialysis arteriovenous graft</td>
</tr>
<tr>
<td align="left">Gy1..00</td>
<td align="left">Stenosis of dialysis vascular access</td>
</tr>
<tr>
<td align="left">Gy21.00</td>
<td align="left">Thrombosis of dialysis arteriovenous fistula</td>
</tr>
<tr>
<td align="left">Gy2..00</td>
<td align="left">Thrombosis of dialysis vascular access</td>
</tr>
<tr>
<td align="left">Gy30.00</td>
<td align="left">Occlusion of dialysis arteriovenous graft</td>
</tr>
<tr>
<td align="left">Gy31.00</td>
<td align="left">Occlusion of dialysis arteriovenous fistula</td>
</tr>
<tr>
<td align="left">Gy3..00</td>
<td align="left">Occlusion of dialysis vascular access</td>
</tr>
<tr>
<td align="left">Gy40.00</td>
<td align="left">Infection of dialysis arteriovenous graft</td>
</tr>
<tr>
<td align="left">Gy41.00</td>
<td align="left">Infection of dialysis arteriovenous fistula</td>
</tr>
<tr>
<td align="left">Gy4..00</td>
<td align="left">Infection of dialysis vascular access</td>
</tr>
<tr>
<td align="left">Gy51.00</td>
<td align="left">Haemorrhage of dialysis arteriovenous fistula</td>
</tr>
<tr>
<td align="left">Gy5..00</td>
<td align="left">Haemorrhage of dialysis vascular access</td>
</tr>
<tr>
<td align="left">Gy60.00</td>
<td align="left">Rupture of dialysis arteriovenous graft</td>
</tr>
<tr>
<td align="left">K050.00</td>
<td align="left">End stage renal failure</td>
</tr>
<tr>
<td align="left">K05..12</td>
<td align="left">End stage renal failure</td>
</tr>
<tr>
<td align="left">K0B5.00</td>
<td align="left">Renal tubulo-interstitial disordrs in transplant rejectn</td>
</tr>
<tr>
<td align="left">K0D..00</td>
<td align="left">End-stage renal disease</td>
</tr>
<tr>
<td align="left">Kyu1C00</td>
<td align="left">[X]Renal tubulo-interstitial disorders/transplant rejection</td>
</tr>
<tr>
<td align="left">SP01500</td>
<td align="left">Mechanical complication of dialysis catheter</td>
</tr>
<tr>
<td align="left">SP05613</td>
<td align="left">[X] Peritoneal dialysis associated peritonitis</td>
</tr>
<tr>
<td align="left">SP06B00</td>
<td align="left">Continuous ambulatory peritoneal dialysis associated perit</td>
</tr>
<tr>
<td align="left">SP07G00</td>
<td align="left">Stenosis of arteriovenous dialysis fistula</td>
</tr>
<tr>
<td align="left">SP08300</td>
<td align="left">Kidney transplant failure and rejection</td>
</tr>
<tr>
<td align="left">SP08D00</td>
<td align="left">Acute-on-chronic rejection of renal transplant</td>
</tr>
<tr>
<td align="left">SP08E00</td>
<td align="left">Acute rejection of renal transplant - grade I</td>
</tr>
<tr>
<td align="left">SP08F00</td>
<td align="left">Acute rejection of renal transplant - grade II</td>
</tr>
<tr>
<td align="left">SP08G00</td>
<td align="left">Acute rejection of renal transplant - grade III</td>
</tr>
<tr>
<td align="left">SP08H00</td>
<td align="left">Acute rejection of renal transplant</td>
</tr>
<tr>
<td align="left">SP08J00</td>
<td align="left">Chronic rejection of renal transplant</td>
</tr>
<tr>
<td align="left">SP08N00</td>
<td align="left">Unexplained episode of renal transplant dysfunction</td>
</tr>
<tr>
<td align="left">SP08P00</td>
<td align="left">Stenosis of vein of transplanted kidney</td>
</tr>
<tr>
<td align="left">SP08R00</td>
<td align="left">Renal transplant rejection</td>
</tr>
<tr>
<td align="left">SP08T00</td>
<td align="left">Urological complication of renal transplant</td>
</tr>
<tr>
<td align="left">SP08V00</td>
<td align="left">Very mild acute rejection of renal transplant</td>
</tr>
<tr>
<td align="left">SP08W00</td>
<td align="left">Vascular complication of renal transplant</td>
</tr>
<tr>
<td align="left">SP0E.00</td>
<td align="left">Disorders associated with peritoneal dialysis</td>
</tr>
<tr>
<td align="left">SP0F.00</td>
<td align="left">Haemodialysis first use syndrome</td>
</tr>
<tr>
<td align="left">SP0G.00</td>
<td align="left">Anaphylactoid reaction due to haemodialysis</td>
</tr>
<tr>
<td align="left">TA02000</td>
<td align="left">Accid cut,puncture,perf,h'ge - kidney dialysis</td>
</tr>
<tr>
<td align="left">TA22000</td>
<td align="left">Failure of sterile precautions during kidney dialysis</td>
</tr>
<tr>
<td align="left">TB00100</td>
<td align="left">Kidney transplant with complication, without blame</td>
</tr>
<tr>
<td align="left">TB00111</td>
<td align="left">Renal transplant with complication, without blame</td>
</tr>
<tr>
<td align="left">TB11.00</td>
<td align="left">Kidney dialysis with complication, without blame</td>
</tr>
<tr>
<td align="left">TB11.11</td>
<td align="left">Renal dialysis with complication, without blame</td>
</tr>
<tr>
<td align="left">Z1A1.00</td>
<td align="left">Peritoneal dialysis training</td>
</tr>
<tr>
<td align="left">Z1A2.00</td>
<td align="left">Haemodialysis training</td>
</tr>
<tr>
<td align="left">Z1A..00</td>
<td align="left">Dialysis training</td>
</tr>
<tr>
<td align="left">Z919100</td>
<td align="left">Priming haemodialysis lines</td>
</tr>
<tr>
<td align="left">Z919200</td>
<td align="left">Washing back through haemodialysis lines</td>
</tr>
<tr>
<td align="left">Z919300</td>
<td align="left">Reversing haemodialysis lines</td>
</tr>
<tr>
<td align="left">Z919.00</td>
<td align="left">Care of haemodialysis equipment</td>
</tr>
<tr>
<td align="left">Z91A.00</td>
<td align="left">Peritoneal dialysis bag procedure</td>
</tr>
<tr>
<td align="left">ZV42000</td>
<td align="left">[V]Kidney transplanted</td>
</tr>
<tr>
<td align="left">ZV45100</td>
<td align="left">[V]Renal dialysis status</td>
</tr>
<tr>
<td align="left">ZV56000</td>
<td align="left">[V]Aftercare involving extracorporeal dialysis</td>
</tr>
<tr>
<td align="left">ZV56011</td>
<td align="left">[V]Aftercare involving renal dialysis NOS</td>
</tr>
<tr>
<td align="left">ZV56y00</td>
<td align="left">[V]Other specified aftercare involving intermittent dialysis</td>
</tr>
<tr>
<td align="left">ZV56y11</td>
<td align="left">[V]Aftercare involving peritoneal dialysis</td>
</tr>
<tr>
<td align="left">ZV56.00</td>
<td align="left">[V]Aftercare involving intermittent dialysis</td>
</tr>
<tr>
<td align="left">ZV56z00</td>
<td align="left">[V]Unspecified aftercare involving intermittent dialysis</td>
</tr>
<tr>
<td align="left">ZVu3G00</td>
<td align="left">[X]Other dialysis</td>
</tr>
</tbody>
</table>
<h4>Secondary care diagnoses (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//secondary_care/ICD_ESRD.csv'>ICD_ESRD.csv</a>)</h4>
<table>
<thead>
<tr>
<th>ICD-10 code</th>
<th>ICD-10 Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left">N18.5</td>
<td align="left">Chronic kidney disease, stage 5</td>
</tr>
<tr>
<td align="left">T82.4</td>
<td align="left">Mechanical complication of vascular dialysis catheter</td>
</tr>
<tr>
<td align="left">Y60.2</td>
<td align="left">During kidney dialysis or other perfusion</td>
</tr>
<tr>
<td align="left">Y61.2</td>
<td align="left">During kidney dialysis or other perfusion</td>
</tr>
<tr>
<td align="left">Y84.1</td>
<td align="left">Kidney dialysis</td>
</tr>
<tr>
<td align="left">Z49.1</td>
<td align="left">Extracorporeal dialysis</td>
</tr>
<tr>
<td align="left">Z49.2</td>
<td align="left">Other dialysis</td>
</tr>
<tr>
<td align="left">Z99.2</td>
<td align="left">Dependence on renal dialysis</td>
</tr>
<tr>
<td align="left">N16.5</td>
<td align="left">Renal tubulo-interstitial disorders in transplant rejection</td>
</tr>
<tr>
<td align="left">T86.1</td>
<td align="left">Kidney transplant failure and rejection</td>
</tr>
<tr>
<td align="left">Z94.0</td>
<td align="left">Kidney transplant status</td>
</tr>
</tbody>
</table>
<h4>Secondary care procedures (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//secondary_care/OPCS_ESRD.csv'>OPCS_ESRD.csv</a>)</h4>
<table>
<thead>
<tr>
<th>OPCS-4 code</th>
<th>OPCS-4 Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left">L74.6</td>
<td align="left">Creation of graft fistula for dialysis</td>
</tr>
<tr>
<td align="left">M01.1</td>
<td align="left">Autotransplantation of kidney</td>
</tr>
<tr>
<td align="left">M01.2</td>
<td align="left">Allotransplantation of kidney from live donor</td>
</tr>
<tr>
<td align="left">M01.3</td>
<td align="left">Allotransplantation of kidney from cadaver NEC</td>
</tr>
<tr>
<td align="left">M01.4</td>
<td align="left">Allotransplantation of kidney from cadaver heart beating</td>
</tr>
<tr>
<td align="left">M01.5</td>
<td align="left">Allotransplantation of kidney from cadaver heart non-beating</td>
</tr>
<tr>
<td align="left">M01.8</td>
<td align="left">Other specified transplantation of kidney</td>
</tr>
<tr>
<td align="left">M01.9</td>
<td align="left">Unspecified transplantation of kidney</td>
</tr>
<tr>
<td align="left">M02.6</td>
<td align="left">Excision of rejected transplanted kidney</td>
</tr>
<tr>
<td align="left">M02.7</td>
<td align="left">Excision of transplanted kidney NEC</td>
</tr>
<tr>
<td align="left">M08.4</td>
<td align="left">Exploration of transplanted kidney</td>
</tr>
<tr>
<td align="left">M17.2</td>
<td align="left">Pre-transplantation of kidney work-up - recipient</td>
</tr>
<tr>
<td align="left">M17.4</td>
<td align="left">Post-transplantation of kidney examination - recipient</td>
</tr>
<tr>
<td align="left">M17.8</td>
<td align="left">Other specified interventions associated with transplantation of kidney</td>
</tr>
<tr>
<td align="left">M17.9</td>
<td align="left">Unspecified interventions associated with transplantation of kidney</td>
</tr>
<tr>
<td align="left">X40.1</td>
<td align="left">Renal dialysis</td>
</tr>
<tr>
<td align="left">X40.2</td>
<td align="left">Peritoneal dialysis NEC</td>
</tr>
<tr>
<td align="left">X40.3</td>
<td align="left">Haemodialysis NEC</td>
</tr>
<tr>
<td align="left">X40.5</td>
<td align="left">Automated peritoneal dialysis</td>
</tr>
<tr>
<td align="left">X40.6</td>
<td align="left">Continuous ambulatory peritoneal dialysis</td>
</tr>
<tr>
<td align="left">X41.1</td>
<td align="left">Insertion of ambulatory peritoneal dialysis catheter</td>
</tr>
<tr>
<td align="left">X41.2</td>
<td align="left">Removal of ambulatory peritoneal dialysis catheter</td>
</tr>
<tr>
<td align="left">X42.1</td>
<td align="left">Insertion of temporary peritoneal dialysis catheter</td>
</tr>
</tbody>
</table>
<h2>Endometrial hyperplasia and hypertrophy</h2>
<h4>Implementation</h4>
~~~
At the specified date, a patient is defined as having had 'Endometrial hyperplasia and hypertrophy' and hypertrophy IF they meet the criteria for any of the following on or before the specified date. The earliest date on which the individual meets any of the following criteria on or before the specified date is defined as the first event date:
Primary care
1. 'Endometrial hyperplasia and hypertrophy' and hypertrophy diagnosis or history of diagnosis during a consultation
OR
Secondary care
1. ALL diagnoses of 'Endometrial hyperplasia and hypertrophy' and hypertrophy or history of diagnosis during a hospitalization
~~~
<h4>Primary care (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//primary_care/CPRD_endometrial_hyper.csv'>CPRD_endometrial_hyper.csv</a>)</h4>
<table>
<thead>
<tr>
<th>Read code</th>
<th>Read Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left">K542000</td>
<td align="left">Hypertrophy of uterus unspecified</td>
</tr>
<tr>
<td align="left">K542100</td>
<td align="left">Bulky uterus</td>
</tr>
<tr>
<td align="left">K542200</td>
<td align="left">Enlarged uterus</td>
</tr>
<tr>
<td align="left">K542.00</td>
<td align="left">Hypertrophy of the uterus</td>
</tr>
<tr>
<td align="left">K542z00</td>
<td align="left">Hypertrophy of the uterus NOS</td>
</tr>
<tr>
<td align="left">K543000</td>
<td align="left">Adenomatous endometrial hyperplasia</td>
</tr>
<tr>
<td align="left">K543100</td>
<td align="left">Cystic endometrial hyperplasia</td>
</tr>
<tr>
<td align="left">K543200</td>
<td align="left">Glandular endometrial hyperplasia</td>
</tr>
<tr>
<td align="left">K543.00</td>
<td align="left">Endometrial cystic hyperplasia</td>
</tr>
<tr>
<td align="left">K543z00</td>
<td align="left">Endometrial cystic hyperplasia NOS</td>
</tr>
</tbody>
</table>
<h4>Secondary care diagnoses (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//secondary_care/ICD_endometrial_hyper.csv'>ICD_endometrial_hyper.csv</a>)</h4>
<table>
<thead>
<tr>
<th>ICD-10 code</th>
<th>ICD-10 Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left">N85.0</td>
<td align="left">Endometrial glandular hyperplasia</td>
</tr>
<tr>
<td align="left">N85.1</td>
<td align="left">Endometrial adenomatous hyperplasia</td>
</tr>
<tr>
<td align="left">N85.2</td>
<td align="left">Hypertrophy of uterus</td>
</tr>
</tbody>
</table>
<h2>Endometriosis</h2>
<h4>Implementation</h4>
~~~
At the specified date, a patient is defined as having had 'Endometriosis' IF they meet the criteria for any of the following on or before the specified date. The earliest date on which the individual meets any of the following criteria on or before the specified date is defined as the first event date:
Primary care
1. 'Endometriosis' diagnosis or history of diagnosis or procedure during a consultation
OR
Secondary care
1. ALL diagnoses of 'Endometriosis' or history of diagnosis during a hospitalization
~~~
<h4>Primary care (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//primary_care/CPRD_endometriosis.csv'>CPRD_endometriosis.csv</a>)</h4>
<table>
<thead>
<tr>
<th>Read code</th>
<th>Read Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left">7E0D800</td>
<td align="left">Laparoscopic laser destruction of endometriosis</td>
</tr>
<tr>
<td align="left">BBL1.11</td>
<td align="left">[M]Stromal endometriosis</td>
</tr>
<tr>
<td align="left">K500000</td>
<td align="left">Internal endometriosis</td>
</tr>
<tr>
<td align="left">K500100</td>
<td align="left">Endometriosis of myometrium</td>
</tr>
<tr>
<td align="left">K500111</td>
<td align="left">Adenomyosis of endometrium</td>
</tr>
<tr>
<td align="left">K500200</td>
<td align="left">Endometriosis of cervix</td>
</tr>
<tr>
<td align="left">K500.00</td>
<td align="left">Endometriosis of uterus</td>
</tr>
<tr>
<td align="left">K500z00</td>
<td align="left">Endometriosis of uterus NOS</td>
</tr>
<tr>
<td align="left">K501.00</td>
<td align="left">Endometriosis of ovary</td>
</tr>
<tr>
<td align="left">K501.11</td>
<td align="left">Chocolate cyst of ovary</td>
</tr>
<tr>
<td align="left">K502.00</td>
<td align="left">Endometriosis of the fallopian tube</td>
</tr>
<tr>
<td align="left">K503000</td>
<td align="left">Endometriosis of the broad ligament</td>
</tr>
<tr>
<td align="left">K503100</td>
<td align="left">Endometriosis of the pouch of Douglas</td>
</tr>
<tr>
<td align="left">K503200</td>
<td align="left">Endometriosis of the parametrium</td>
</tr>
<tr>
<td align="left">K503300</td>
<td align="left">Endometriosis of the round ligament</td>
</tr>
<tr>
<td align="left">K503.00</td>
<td align="left">Endometriosis of the pelvic peritoneum</td>
</tr>
<tr>
<td align="left">K503z00</td>
<td align="left">Endometriosis of the pelvic peritoneum NOS</td>
</tr>
<tr>
<td align="left">K504000</td>
<td align="left">Endometriosis of the rectovaginal septum</td>
</tr>
<tr>
<td align="left">K504100</td>
<td align="left">Endometriosis of the vagina</td>
</tr>
<tr>
<td align="left">K504.00</td>
<td align="left">Endometriosis of the rectovaginal septum and vagina</td>
</tr>
<tr>
<td align="left">K504z00</td>
<td align="left">Endometriosis of the rectovaginal septum and vagina NOS</td>
</tr>
<tr>
<td align="left">K505000</td>
<td align="left">Endometriosis of the appendix</td>
</tr>
<tr>
<td align="left">K505100</td>
<td align="left">Endometriosis of the colon</td>
</tr>
<tr>
<td align="left">K505200</td>
<td align="left">Endometriosis of the rectum</td>
</tr>
<tr>
<td align="left">K505.00</td>
<td align="left">Endometriosis of the intestine</td>
</tr>
<tr>
<td align="left">K505z00</td>
<td align="left">Endometriosis of the intestine NOS</td>
</tr>
<tr>
<td align="left">K506.00</td>
<td align="left">Endometriosis in scar of skin</td>
</tr>
<tr>
<td align="left">K50..00</td>
<td align="left">Endometriosis</td>
</tr>
<tr>
<td align="left">K50..11</td>
<td align="left">Adenomyosis</td>
</tr>
<tr>
<td align="left">K50y000</td>
<td align="left">Endometriosis of the bladder</td>
</tr>
<tr>
<td align="left">K50y100</td>
<td align="left">Endometriosis of the lung</td>
</tr>
<tr>
<td align="left">K50y200</td>
<td align="left">Endometriosis of the umbilicus</td>
</tr>
<tr>
<td align="left">K50y300</td>
<td align="left">Endometriosis of the vulva</td>
</tr>
<tr>
<td align="left">K50y.00</td>
<td align="left">Other endometriosis</td>
</tr>
<tr>
<td align="left">K50yz00</td>
<td align="left">Other endometriosis NOS</td>
</tr>
<tr>
<td align="left">K50z.00</td>
<td align="left">Endometriosis NOS</td>
</tr>
<tr>
<td align="left">Kyu9000</td>
<td align="left">[X]Other endometriosis</td>
</tr>
</tbody>
</table>
<h4>Secondary care diagnoses (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//secondary_care/ICD_endometriosis.csv'>ICD_endometriosis.csv</a>)</h4>
<table>
<thead>
<tr>
<th>ICD-10 code</th>
<th>ICD-10 Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left">N80</td>
<td align="left">Endometriosis</td>
</tr>
</tbody>
</table>
<h2>Enteropathic arthropathy</h2>
<h4>Implementation</h4>
~~~
At the specified date, a patient is defined as having had 'Enteropathic arthropathy' IF they meet the criteria for any of the following on or before the specified date. The earliest date on which the individual meets any of the following criteria on or before the specified date is defined as the first event date:
Primary care
1. 'Enteropathic arthropathy' diagnosis or history of diagnosis during a consultation
OR
Secondary care (ICD10)
1. ALL diagnoses of 'Enteropathic arthropathy' or history of diagnosis during a hospitalization
~~~
<h4>Primary care (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//primary_care/CPRD_entero_arthro.csv'>CPRD_entero_arthro.csv</a>)</h4>
<table>
<thead>
<tr>
<th>Read code</th>
<th>Read Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left">N031000</td>
<td align="left">Arthropathy in ulcerative colitis</td>
</tr>
<tr>
<td align="left">N031100</td>
<td align="left">Arthropathy in Crohn's disease</td>
</tr>
<tr>
<td align="left">Nyu1400</td>
<td align="left">[X]Other enteropathic arthropathies</td>
</tr>
</tbody>
</table>
<h4>Secondary care diagnoses (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//secondary_care/ICD_entero_arthro.csv'>ICD_entero_arthro.csv</a>)</h4>
<table>
<thead>
<tr>
<th>ICD-10 code</th>
<th>ICD-10 Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left">M07.4</td>
<td align="left">Arthropathy in Crohn's disease [regional enteritis]</td>
</tr>
<tr>
<td align="left">M07.5</td>
<td align="left">Arthropathy in ulcerative colitis</td>
</tr>
<tr>
<td align="left">M07.6</td>
<td align="left">Other enteropathic arthropathies</td>
</tr>
</tbody>
</table>
<h2>Enthesopathies & synovial disorders</h2>
<h4>Implementation</h4>
~~~
At the specified date, a patient is defined as having had 'Enthesopathies & synovial disorders' IF they meet the criteria for any of the following on or before the specified date. The earliest date on which the individual meets any of the following criteria on or before the specified date is defined as the first event date:
Primary care
1. 'Enthesopathies & synovial disorders' diagnosis or history of diagnosis during a consultation
OR
Secondary care (ICD10)
1. ALL diagnoses of 'Enthesopathies & synovial disorders' or history of diagnosis during a hospitalization
~~~
<h4>Primary care (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//primary_care/CPRD_enthesopathy.csv'>CPRD_enthesopathy.csv</a>)</h4>
<table>
<thead>
<tr>
<th>Read code</th>
<th>Read Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left">N040Q00</td>
<td align="left">Rheumatoid bursitis</td>
</tr>
<tr>
<td align="left">N04y300</td>
<td align="left">Remitting seronegative symmetrical synovitis pitting oedema</td>
</tr>
<tr>
<td align="left">N101.00</td>
<td align="left">Spinal enthesopathy</td>
</tr>
<tr>
<td align="left">N21..00</td>
<td align="left">Peripheral enthesopathies and allied syndromes</td>
</tr>
<tr>
<td align="left">N210.00</td>
<td align="left">Adhesive capsulitis of the shoulder</td>
</tr>
<tr>
<td align="left">N210.11</td>
<td align="left">Bursitis - shoulder</td>
</tr>
<tr>
<td align="left">N210.12</td>
<td align="left">Frozen shoulder</td>
</tr>
<tr>
<td align="left">N211.00</td>
<td align="left">Rotator cuff shoulder syndrome and allied disorders</td>
</tr>
<tr>
<td align="left">N211000</td>
<td align="left">Rotator cuff syndrome, unspecified</td>
</tr>
<tr>
<td align="left">N211011</td>
<td align="left">Supraspinatus syndrome</td>
</tr>
<tr>
<td align="left">N211100</td>
<td align="left">Calcifying tendinitis of the shoulder</td>
</tr>
<tr>
<td align="left">N211200</td>
<td align="left">Bicipital tenosynovitis</td>
</tr>
<tr>
<td align="left">N211300</td>
<td align="left">Supraspinatus tendinitis</td>
</tr>
<tr>
<td align="left">N211400</td>
<td align="left">Partial thickness rotator cuff tear</td>
</tr>
<tr>
<td align="left">N211500</td>
<td align="left">Full thickness rotator cuff tear</td>
</tr>
<tr>
<td align="left">N211600</td>
<td align="left">Subacromial bursitis</td>
</tr>
<tr>
<td align="left">N211700</td>
<td align="left">Subdeltoid bursitis</td>
</tr>
<tr>
<td align="left">N211800</td>
<td align="left">Bursitis of shoulder</td>
</tr>
<tr>
<td align="left">N211z00</td>
<td align="left">Rotator cuff syndrome NOS</td>
</tr>
<tr>
<td align="left">N211z11</td>
<td align="left">Painful arc syndrome</td>
</tr>
<tr>
<td align="left">N211z12</td>
<td align="left">Subacromial bursitis</td>
</tr>
<tr>
<td align="left">N212.00</td>
<td align="left">Other shoulder affections NEC</td>
</tr>
<tr>
<td align="left">N212000</td>
<td align="left">Periarthritis of shoulder</td>
</tr>
<tr>
<td align="left">N212100</td>
<td align="left">Scapulohumeral fibrositis</td>
</tr>
<tr>
<td align="left">N212200</td>
<td align="left">Subacromial impingement</td>
</tr>
<tr>
<td align="left">N212300</td>
<td align="left">Coracoid impingement</td>
</tr>
<tr>
<td align="left">N212400</td>
<td align="left">Impingement syndrome of shoulder</td>
</tr>
<tr>
<td align="left">N212500</td>
<td align="left">Shoulder tendonitis</td>
</tr>
<tr>
<td align="left">N212z00</td>
<td align="left">Other shoulder affections NEC, NOS</td>
</tr>
<tr>
<td align="left">N213.00</td>
<td align="left">Enthesopathy of the elbow region</td>
</tr>
<tr>
<td align="left">N213000</td>
<td align="left">Elbow enthesopathy unspecified</td>
</tr>
<tr>
<td align="left">N213100</td>
<td align="left">Medial epicondylitis of the elbow</td>
</tr>
<tr>
<td align="left">N213111</td>
<td align="left">Golfer's elbow</td>
</tr>
<tr>
<td align="left">N213200</td>
<td align="left">Lateral epicondylitis of the elbow</td>
</tr>
<tr>
<td align="left">N213211</td>
<td align="left">Tennis elbow</td>
</tr>
<tr>
<td align="left">N213300</td>
<td align="left">Olecranon bursitis</td>
</tr>
<tr>
<td align="left">N213400</td>
<td align="left">Biceps tendinitis</td>
</tr>
<tr>
<td align="left">N213500</td>
<td align="left">Triceps tendinitis</td>
</tr>
<tr>
<td align="left">N213z00</td>
<td align="left">Elbow enthesopathy NOS</td>
</tr>
<tr>
<td align="left">N214.00</td>
<td align="left">Enthesopathy of the wrist and carpus</td>
</tr>
<tr>
<td align="left">N214000</td>
<td align="left">Bursitis of wrist</td>
</tr>
<tr>
<td align="left">N214100</td>
<td align="left">Bursitis of hand</td>
</tr>
<tr>
<td align="left">N214200</td>
<td align="left">Periarthritis of wrist</td>
</tr>
<tr>
<td align="left">N214300</td>
<td align="left">Carpometacarpal bossing</td>
</tr>
<tr>
<td align="left">N214z00</td>
<td align="left">Wrist or carpus enthesopathy NOS</td>
</tr>
<tr>
<td align="left">N215.00</td>
<td align="left">Enthesopathy of the hip region</td>
</tr>
<tr>
<td align="left">N215000</td>
<td align="left">Hip enthesopathy, unspecified</td>
</tr>
<tr>
<td align="left">N215100</td>
<td align="left">Bursitis of hip</td>
</tr>
<tr>
<td align="left">N215200</td>
<td align="left">Gluteal tendinitis</td>
</tr>
<tr>
<td align="left">N215300</td>
<td align="left">Iliac crest spur</td>
</tr>
<tr>
<td align="left">N215400</td>
<td align="left">Psoas tendinitis</td>
</tr>
<tr>
<td align="left">N215500</td>
<td align="left">Trochanteric tendinitis</td>
</tr>
<tr>
<td align="left">N215600</td>
<td align="left">Adductor tendinitis</td>
</tr>
<tr>
<td align="left">N215700</td>
<td align="left">Trochanteric bursitis</td>
</tr>
<tr>
<td align="left">N215800</td>
<td align="left">Snapping hip</td>
</tr>
<tr>
<td align="left">N215900</td>
<td align="left">Iliotibial band syndrome</td>
</tr>
<tr>
<td align="left">N215A00</td>
<td align="left">Ischial bursitis</td>
</tr>
<tr>
<td align="left">N215z00</td>
<td align="left">Hip enthesopathy NOS</td>
</tr>
<tr>
<td align="left">N216.00</td>
<td align="left">Enthesopathy of the knee</td>
</tr>
<tr>
<td align="left">N216000</td>
<td align="left">Bursitis of the knee NOS</td>
</tr>
<tr>
<td align="left">N216011</td>
<td align="left">Semi-membranosus bursitis</td>
</tr>
<tr>
<td align="left">N216012</td>
<td align="left">Popliteal bursitis</td>
</tr>
<tr>
<td align="left">N216100</td>
<td align="left">Pes anserinus tendinitis and bursitis</td>
</tr>
<tr>
<td align="left">N216200</td>
<td align="left">Tibial collateral ligament bursitis</td>
</tr>
<tr>
<td align="left">N216211</td>
<td align="left">Pellegrini - Stieda syndrome</td>
</tr>
<tr>
<td align="left">N216300</td>
<td align="left">Fibular collateral ligament bursitis</td>
</tr>
<tr>
<td align="left">N216400</td>
<td align="left">Patellar tendinitis</td>
</tr>
<tr>
<td align="left">N216500</td>
<td align="left">Prepatellar bursitis</td>
</tr>
<tr>
<td align="left">N216600</td>
<td align="left">Infrapatellar bursitis</td>
</tr>
<tr>
<td align="left">N216700</td>
<td align="left">Subpatellar bursitis</td>
</tr>
<tr>
<td align="left">N216800</td>
<td align="left">Biceps femoris tendinitis</td>
</tr>
<tr>
<td align="left">N216900</td>
<td align="left">Semimembranosus tendinitis</td>
</tr>
<tr>
<td align="left">N216z00</td>
<td align="left">Knee enthesopathy NOS</td>
</tr>
<tr>
<td align="left">N216z11</td>
<td align="left">Suprapatellar bursitis</td>
</tr>
<tr>
<td align="left">N217.00</td>
<td align="left">Enthesopathy of the ankle and tarsus</td>
</tr>
<tr>
<td align="left">N217.11</td>
<td align="left">Tarsus enthesopathy</td>
</tr>
<tr>
<td align="left">N217000</td>
<td align="left">Enthesopathy of the ankle unspecified</td>
</tr>
<tr>
<td align="left">N217100</td>
<td align="left">Enthesopathy of the tarsus unspecified</td>
</tr>
<tr>
<td align="left">N217300</td>
<td align="left">Achilles bursitis</td>
</tr>
<tr>
<td align="left">N217400</td>
<td align="left">Achilles tendinitis</td>
</tr>
<tr>
<td align="left">N217500</td>
<td align="left">Tibialis anterior tendinitis</td>
</tr>
<tr>
<td align="left">N217600</td>
<td align="left">Tibialis posterior tendinitis</td>
</tr>
<tr>
<td align="left">N217700</td>
<td align="left">Calcaneal spur</td>
</tr>
<tr>
<td align="left">N217800</td>
<td align="left">Peroneal tendinitis</td>
</tr>
<tr>
<td align="left">N217B00</td>
<td align="left">Anterior ankle impingement</td>
</tr>
<tr>
<td align="left">N217C00</td>
<td align="left">Fibular impingement</td>
</tr>
<tr>
<td align="left">N217z00</td>
<td align="left">Ankle or tarsus enthesopathy NOS</td>
</tr>
<tr>
<td align="left">N21y.00</td>
<td align="left">Other peripheral enthesopathies</td>
</tr>
<tr>
<td align="left">N21z.00</td>
<td align="left">Enthesopathy NOS</td>
</tr>
<tr>
<td align="left">N21z000</td>
<td align="left">Capsulitis NOS</td>
</tr>
<tr>
<td align="left">N21z100</td>
<td align="left">Periarthritis NOS</td>
</tr>
<tr>
<td align="left">N21z200</td>
<td align="left">Tendinitis NOS</td>
</tr>
<tr>
<td align="left">N21z211</td>
<td align="left">Tendonitis NOS</td>
</tr>
<tr>
<td align="left">N21z212</td>
<td align="left">Bicepital tendonitis</td>
</tr>
<tr>
<td align="left">N21z213</td>
<td align="left">Tendonitis bicepital</td>
</tr>
<tr>
<td align="left">N21z214</td>
<td align="left">Adductor tendonitis</td>
</tr>
<tr>
<td align="left">N21z215</td>
<td align="left">Tendonitis adductor</td>
</tr>
<tr>
<td align="left">N21z216</td>
<td align="left">Supraspinatus tendonitis</td>
</tr>
<tr>
<td align="left">N21zz00</td>
<td align="left">Peripheral enthesopathy NOS</td>
</tr>
<tr>
<td align="left">N220.00</td>
<td align="left">Synovitis and tenosynovitis</td>
</tr>
<tr>
<td align="left">N220000</td>
<td align="left">Synovitis or tenosynovitis NOS</td>
</tr>
<tr>
<td align="left">N220100</td>
<td align="left">Synovitis and tenosynovitis with disorders EC</td>
</tr>
<tr>
<td align="left">N220300</td>
<td align="left">Trigger finger - acquired</td>
</tr>
<tr>
<td align="left">N220311</td>
<td align="left">Trigger thumb</td>
</tr>
<tr>
<td align="left">N220312</td>
<td align="left">Snapping fingers</td>
</tr>
<tr>
<td align="left">N220313</td>
<td align="left">Finger trigger</td>
</tr>
<tr>
<td align="left">N220400</td>
<td align="left">Radial styloid tenosynovitis</td>
</tr>
<tr>
<td align="left">N220411</td>
<td align="left">De Quervain's disease</td>
</tr>
<tr>
<td align="left">N220412</td>
<td align="left">Trigger thumb - acquired</td>
</tr>
<tr>
<td align="left">N220413</td>
<td align="left">Thumb trigger</td>
</tr>
<tr>
<td align="left">N220500</td>
<td align="left">Other tenosynovitis of hand or wrist</td>
</tr>
<tr>
<td align="left">N220511</td>
<td align="left">Other tenosynovitis of the hand</td>
</tr>
<tr>
<td align="left">N220512</td>
<td align="left">Other tenosynovitis of the wrist</td>
</tr>
<tr>
<td align="left">N220513</td>
<td align="left">Tensynovitis of fingers</td>
</tr>
<tr>
<td align="left">N220514</td>
<td align="left">Tendonitis of thumb</td>
</tr>
<tr>
<td align="left">N220600</td>
<td align="left">Tenosynovitis of ankle</td>
</tr>
<tr>
<td align="left">N220700</td>
<td align="left">Tenosynovitis of foot</td>
</tr>
<tr>
<td align="left">N220900</td>
<td align="left">Plant thorn synovitis</td>
</tr>
<tr>
<td align="left">N220A00</td>
<td align="left">Flexor tenosynovitis of wrist</td>
</tr>
<tr>
<td align="left">N220B00</td>
<td align="left">Flexor tenosynovitis of finger</td>
</tr>
<tr>
<td align="left">N220C00</td>
<td align="left">Flexor tenosynovitis of thumb</td>
</tr>
<tr>
<td align="left">N220D00</td>
<td align="left">Extensor tenosynovitis of wrist</td>
</tr>
<tr>
<td align="left">N220E00</td>
<td align="left">Extensor tenosynovitis of finger</td>
</tr>
<tr>
<td align="left">N220F00</td>
<td align="left">Extensor tenosynovitis of thumb</td>
</tr>
<tr>
<td align="left">N220G00</td>
<td align="left">Acquired trigger thumb</td>
</tr>
<tr>
<td align="left">N220H00</td>
<td align="left">Achilles tenosynovitis</td>
</tr>
<tr>
<td align="left">N220J00</td>
<td align="left">Tibialis anterior tenosynovitis</td>
</tr>
<tr>
<td align="left">N220K00</td>
<td align="left">Tibialis posterior tenosynovitis</td>
</tr>
<tr>
<td align="left">N220L00</td>
<td align="left">Extensor hallucis longus tenosynovitis</td>
</tr>
<tr>
<td align="left">N220M00</td>
<td align="left">Extensor digitorum longus tenosynovitis</td>
</tr>
<tr>
<td align="left">N220N00</td>
<td align="left">Peroneus longus tenosynovitis</td>
</tr>
<tr>
<td align="left">N220P00</td>
<td align="left">Peroneus brevis tenosynovitis</td>
</tr>
<tr>
<td align="left">N220Q00</td>
<td align="left">Transient synovitis</td>
</tr>
<tr>
<td align="left">N220R00</td>
<td align="left">Chronic crepitant synovitis of hand and wrist</td>
</tr>
<tr>
<td align="left">N220S00</td>
<td align="left">Synovitis of hip</td>
</tr>
<tr>
<td align="left">N220T00</td>
<td align="left">Synovitis NOS</td>
</tr>
<tr>
<td align="left">N220V00</td>
<td align="left">Synovitis of knee</td>
</tr>
<tr>
<td align="left">N220W00</td>
<td align="left">Synovitis of elbow</td>
</tr>
<tr>
<td align="left">N220X00</td>
<td align="left">Synovitis of shoulder</td>
</tr>
<tr>
<td align="left">N220Y00</td>
<td align="left">Irritable hip</td>
</tr>
<tr>
<td align="left">N220z00</td>
<td align="left">Other synovitis and tenosynovitis</td>
</tr>
<tr>
<td align="left">N220z11</td>
<td align="left">Shoulder synovitis</td>
</tr>
<tr>
<td align="left">N220z12</td>
<td align="left">Synovitis of knee</td>
</tr>
<tr>
<td align="left">N220z13</td>
<td align="left">Synovitis of elbow</td>
</tr>
<tr>
<td align="left">N222000</td>
<td align="left">Beat elbow</td>
</tr>
<tr>
<td align="left">N222100</td>
<td align="left">Beat hand</td>
</tr>
<tr>
<td align="left">N222200</td>
<td align="left">Beat knee</td>
</tr>
<tr>
<td align="left">N222400</td>
<td align="left">Miners' knee</td>
</tr>
<tr>
<td align="left">N222z00</td>
<td align="left">Specific bursitides NOS</td>
</tr>
<tr>
<td align="left">N223.00</td>
<td align="left">Bursitis NOS</td>
</tr>
<tr>
<td align="left">N223.11</td>
<td align="left">Postcalcaneal bursitis</td>
</tr>
<tr>
<td align="left">N224000</td>
<td align="left">Synovial cyst unspecified</td>
</tr>
<tr>
<td align="left">N224400</td>
<td align="left">Cyst of bursa</td>
</tr>
<tr>
<td align="left">N224A00</td>
<td align="left">Synovial cyst of popliteal space</td>
</tr>
<tr>
<td align="left">N224A11</td>
<td align="left">Baker's cyst</td>
</tr>
<tr>
<td align="left">N225.00</td>
<td align="left">Rupture of synovium</td>
</tr>
<tr>
<td align="left">N225000</td>
<td align="left">Rupture of synovium, unspecified</td>
</tr>
<tr>
<td align="left">N225100</td>
<td align="left">Rupture of popliteal space synovial cyst</td>
</tr>
<tr>
<td align="left">N225111</td>
<td align="left">Rupture of Baker's cyst - knee</td>
</tr>
<tr>
<td align="left">N225112</td>
<td align="left">Rupture of popliteal bursa</td>
</tr>
<tr>
<td align="left">N225z00</td>
<td align="left">Rupture of synovium NOS</td>
</tr>
<tr>
<td align="left">N226.00</td>
<td align="left">Nontraumatic tendon rupture</td>
</tr>
<tr>
<td align="left">N226000</td>
<td align="left">Nontraumatic tendon rupture, unspecified</td>
</tr>
<tr>
<td align="left">N226100</td>
<td align="left">Rotator cuff complete rupture</td>
</tr>
<tr>
<td align="left">N226200</td>
<td align="left">Biceps tendon rupture</td>
</tr>
<tr>
<td align="left">N226300</td>
<td align="left">Hand and wrist extensor tendon rupture</td>
</tr>
<tr>
<td align="left">N226400</td>
<td align="left">Hand and wrist flexor tendon rupture</td>
</tr>
<tr>
<td align="left">N226500</td>
<td align="left">Quadriceps tendon rupture</td>
</tr>
<tr>
<td align="left">N226600</td>
<td align="left">Nontraumatic rupture of patellar tendon</td>
</tr>
<tr>
<td align="left">N226700</td>
<td align="left">Nontraumatic rupture of Achilles tendon</td>
</tr>
<tr>
<td align="left">N226800</td>
<td align="left">Extensor digitorum communis rupture</td>
</tr>
<tr>
<td align="left">N226900</td>
<td align="left">Extensor pollicis longus rupture</td>
</tr>
<tr>
<td align="left">N226A00</td>
<td align="left">Long head of biceps rupture</td>
</tr>
<tr>
<td align="left">N226C00</td>
<td align="left">Flexor digitorum sublimis tendon rupture</td>
</tr>
<tr>
<td align="left">N226D00</td>
<td align="left">Flexor digitorum profundus tendon rupture</td>
</tr>
<tr>
<td align="left">N226E00</td>
<td align="left">Flexor pollicis longus tendon rupture</td>
</tr>
<tr>
<td align="left">N226F00</td>
<td align="left">Tibialis posterior rupture</td>
</tr>
<tr>
<td align="left">N226G00</td>
<td align="left">Peroneus longus rupture</td>
</tr>
<tr>
<td align="left">N226M00</td>
<td align="left">Spontaneous rupture of flexor tendons</td>
</tr>
<tr>
<td align="left">N226N00</td>
<td align="left">Spontaneous rupture of extensor tendons</td>
</tr>
<tr>
<td align="left">N226y00</td>
<td align="left">Other foot and ankle tendon rupture</td>
</tr>
<tr>
<td align="left">N226z00</td>
<td align="left">Other nontraumatic tendon rupture</td>
</tr>
<tr>
<td align="left">N23y900</td>
<td align="left">Calcific tendinitis</td>
</tr>
<tr>
<td align="left">Nyu9100</td>
<td align="left">[X]Other synovitis and tenosynovitis</td>
</tr>
<tr>
<td align="left">Nyu9200</td>
<td align="left">[X]Spontaneous rupture of other tendons</td>
</tr>
<tr>
<td align="left">NyuA000</td>
<td align="left">[X]Other bursitis of elbow</td>
</tr>
<tr>
<td align="left">NyuA100</td>
<td align="left">[X]Other bursitis of knee</td>
</tr>
<tr>
<td align="left">NyuA200</td>
<td align="left">[X]Other bursitis of hip</td>
</tr>
<tr>
<td align="left">NyuA500</td>
<td align="left">[X]Other bursal cyst</td>
</tr>
<tr>
<td align="left">NyuA600</td>
<td align="left">[X]Other bursitis, not elsewhere classified</td>
</tr>
<tr>
<td align="left">NyuAC00</td>
<td align="left">[X]Other enthesopathies of lower limb, excluding foot</td>
</tr>
<tr>
<td align="left">NyuAD00</td>
<td align="left">[X]Other enthesopathy of foot</td>
</tr>
<tr>
<td align="left">NyuAE00</td>
<td align="left">[X]Other enthesopathies, not elsewhere classified</td>
</tr>
<tr>
<td align="left">NyuAJ00</td>
<td align="left">[X]Enthesopathy of lower limb, unspecified</td>
</tr>
</tbody>
</table>
<h4>Secondary care diagnoses (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//secondary_care/ICD_enthesopathy.csv'>ICD_enthesopathy.csv</a>)</h4>
<table>
<thead>
<tr>
<th>ICD-10 code</th>
<th>ICD-10 Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left">M46.0</td>
<td align="left">Spinal enthesopathy</td>
</tr>
<tr>
<td align="left">M65.2</td>
<td align="left">Calcific tendinitis</td>
</tr>
<tr>
<td align="left">M65.3</td>
<td align="left">Trigger finger</td>
</tr>
<tr>
<td align="left">M65.4</td>
<td align="left">Radial styloid tenosynovitis [de Quervain]</td>
</tr>
<tr>
<td align="left">M65.8</td>
<td align="left">Other synovitis and tenosynovitis</td>
</tr>
<tr>
<td align="left">M65.9</td>
<td align="left">Synovitis and tenosynovitis, unspecified</td>
</tr>
<tr>
<td align="left">M66</td>
<td align="left">Spontaneous rupture of synovium and tendon</td>
</tr>
<tr>
<td align="left">M70</td>
<td align="left">Soft tissue disorders related to use, overuse and pressure</td>
</tr>
<tr>
<td align="left">M71.2</td>
<td align="left">Synovial cyst of popliteal space [Baker]</td>
</tr>
<tr>
<td align="left">M71.3</td>
<td align="left">Other bursal cyst</td>
</tr>
<tr>
<td align="left">M71.4</td>
<td align="left">Calcium deposit in bursa</td>
</tr>
<tr>
<td align="left">M71.5</td>
<td align="left">Other bursitis, not elsewhere classified</td>
</tr>
<tr>
<td align="left">M71.8</td>
<td align="left">Other specified bursopathies</td>
</tr>
<tr>
<td align="left">M71.9</td>
<td align="left">Bursopathy, unspecified</td>
</tr>
<tr>
<td align="left">M75</td>
<td align="left">Shoulder lesions</td>
</tr>
<tr>
<td align="left">M76</td>
<td align="left">Enthesopathies of lower limb, excluding foot</td>
</tr>
<tr>
<td align="left">M77.0</td>
<td align="left">Medial epicondylitis</td>
</tr>
<tr>
<td align="left">M77.1</td>
<td align="left">Lateral epicondylitis</td>
</tr>
<tr>
<td align="left">M77.2</td>
<td align="left">Periarthritis of wrist</td>
</tr>
<tr>
<td align="left">M77.3</td>
<td align="left">Calcaneal spur</td>
</tr>
<tr>
<td align="left">M77.5</td>
<td align="left">Other enthesopathy of foot</td>
</tr>
<tr>
<td align="left">M77.8</td>
<td align="left">Other enthesopathies, not elsewhere classified</td>
</tr>
<tr>
<td align="left">M77.9</td>
<td align="left">Enthesopathy, unspecified</td>
</tr>
</tbody>
</table>
<h2>Epilepsy</h2>
<h4>Implementation</h4>
~~~
At the specified date, a patient is defined as having had 'Epilepsy' IF they meet the criteria for any of the following on or before the specified date. The earliest date on which the individual meets any of the following criteria on or before the specified date is defined as the first event date:
Primary care
1. 'Epilepsy' diagnosis or history of diagnosis during a consultation
OR
Secondary care
1. ALL diagnoses of 'Epilepsy' or history of diagnosis during a hospitalization
~~~
<h4>Primary care (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//primary_care/CPRD_epilepsy.csv'>CPRD_epilepsy.csv</a>)</h4>
<table>
<thead>
<tr>
<th>Read code</th>
<th>Read Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="right">1473</td>
<td align="left">H/O: epilepsy</td>
</tr>
<tr>
<td align="left">1B1W.00</td>
<td align="left">Transient epileptic amnesia</td>
</tr>
<tr>
<td align="left">1O30.00</td>
<td align="left">Epilepsy confirmed</td>
</tr>
<tr>
<td align="left">2126000.0</td>
<td align="left">Epilepsy resolved</td>
</tr>
<tr>
<td align="left">212J.00</td>
<td align="left">Epilepsy resolved</td>
</tr>
<tr>
<td align="left">6110.00</td>
<td align="left">Contraceptive advice for patients with epilepsy</td>
</tr>
<tr>
<td align="left">6674.00</td>
<td align="left">Epilepsy associated problems</td>
</tr>
<tr>
<td align="left">667..00</td>
<td align="left">Epilepsy monitoring</td>
</tr>
<tr>
<td align="left">6677.00</td>
<td align="left">Epilepsy drug side effects</td>
</tr>
<tr>
<td align="left">6678.00</td>
<td align="left">Epilepsy treatment changed</td>
</tr>
<tr>
<td align="left">6679.00</td>
<td align="left">Epilepsy treatment started</td>
</tr>
<tr>
<td align="left">667A.00</td>
<td align="left">Epilepsy treatment stopped</td>
</tr>
<tr>
<td align="left">667B.00</td>
<td align="left">Nocturnal epilepsy</td>
</tr>
<tr>
<td align="left">667C.00</td>
<td align="left">Epilepsy control good</td>
</tr>
<tr>
<td align="left">667D.00</td>
<td align="left">Epilepsy control poor</td>
</tr>
<tr>
<td align="left">667E.00</td>
<td align="left">Epilepsy care arrangement</td>
</tr>
<tr>
<td align="left">667F.00</td>
<td align="left">Seizure free >12 months</td>
</tr>
<tr>
<td align="left">667G.00</td>
<td align="left">Epilepsy restricts employment</td>
</tr>
<tr>
<td align="left">667H.00</td>
<td align="left">Epilepsy prevents employment</td>
</tr>
<tr>
<td align="left">667J.00</td>
<td align="left">Epilepsy impairs education</td>
</tr>
<tr>
<td align="left">667K.00</td>
<td align="left">Epilepsy limits activities</td>
</tr>
<tr>
<td align="left">667L.00</td>
<td align="left">Epilepsy does not limit activities</td>
</tr>
<tr>
<td align="left">667M.00</td>
<td align="left">Epilepsy management plan given</td>
</tr>
<tr>
<td align="left">667N.00</td>
<td align="left">Epilepsy severity</td>
</tr>
<tr>
<td align="left">667P.00</td>
<td align="left">No seizures on treatment</td>
</tr>
<tr>
<td align="left">667Q.00</td>
<td align="left">1 to 12 seizures a year</td>
</tr>
<tr>
<td align="left">667R.00</td>
<td align="left">2 to 4 seizures a month</td>
</tr>
<tr>
<td align="left">667S.00</td>
<td align="left">1 to 7 seizures a week</td>
</tr>
<tr>
<td align="left">667T.00</td>
<td align="left">Daily seizures</td>
</tr>
<tr>
<td align="left">667V.00</td>
<td align="left">Many seizures a day</td>
</tr>
<tr>
<td align="left">667W.00</td>
<td align="left">Emergency epilepsy treatment since last appointment</td>
</tr>
<tr>
<td align="left">667X.00</td>
<td align="left">No epilepsy drug side effects</td>
</tr>
<tr>
<td align="left">667Z.00</td>
<td align="left">Epilepsy monitoring NOS</td>
</tr>
<tr>
<td align="left">67AF.00</td>
<td align="left">Pregnancy advice for patients with epilepsy</td>
</tr>
<tr>
<td align="left">67IJ000</td>
<td align="left">Pre-conception advice for patients with epilepsy</td>
</tr>
<tr>
<td align="left">8BIF.00</td>
<td align="left">Epilepsy medication review</td>
</tr>
<tr>
<td align="left">9Of3.00</td>
<td align="left">Epilepsy monitoring verbal invite</td>
</tr>
<tr>
<td align="left">9Of4.00</td>
<td align="left">Epilepsy monitoring telephone invite</td>
</tr>
<tr>
<td align="left">9Of5.00</td>
<td align="left">Epilepsy monitoring call first letter</td>
</tr>
<tr>
<td align="left">9Of6.00</td>
<td align="left">Epilepsy monitoring call second letter</td>
</tr>
<tr>
<td align="left">9Of7.00</td>
<td align="left">Epilepsy monitoring call third letter</td>
</tr>
<tr>
<td align="left">Eu05212</td>
<td align="left">[X]Schizophrenia-like psychosis in epilepsy</td>
</tr>
<tr>
<td align="left">Eu05y11</td>
<td align="left">[X]Epileptic psychosis NOS</td>
</tr>
<tr>
<td align="left">Eu06013</td>
<td align="left">[X]Limbic epilepsy personality</td>
</tr>
<tr>
<td align="left">Eu80300</td>
<td align="left">[X]Acquired aphasia with epilepsy [Landau - Kleffner]</td>
</tr>
<tr>
<td align="left">F132100</td>
<td align="left">Progressive myoclonic epilepsy</td>
</tr>
<tr>
<td align="left">F132111</td>
<td align="left">Unverricht - Lundborg disease</td>
</tr>
<tr>
<td align="left">F132200</td>
<td align="left">Myoclonic encephalopathy</td>
</tr>
<tr>
<td align="left">F142200</td>
<td align="left">Dyssynergia cerebellaris myoclonica</td>
</tr>
<tr>
<td align="left">F250000</td>
<td align="left">Petit mal (minor) epilepsy</td>
</tr>
<tr>
<td align="left">F250011</td>
<td align="left">Epileptic absences</td>
</tr>
<tr>
<td align="left">F250100</td>
<td align="left">Pykno-epilepsy</td>
</tr>
<tr>
<td align="left">F250200</td>
<td align="left">Epileptic seizures - atonic</td>
</tr>
<tr>
<td align="left">F250300</td>
<td align="left">Epileptic seizures - akinetic</td>
</tr>
<tr>
<td align="left">F250400</td>
<td align="left">Juvenile absence epilepsy</td>
</tr>
<tr>
<td align="left">F250500</td>
<td align="left">Lennox-Gastaut syndrome</td>
</tr>
<tr>
<td align="left">F250.00</td>
<td align="left">Generalised nonconvulsive epilepsy</td>
</tr>
<tr>
<td align="left">F250y00</td>
<td align="left">Other specified generalised nonconvulsive epilepsy</td>
</tr>
<tr>
<td align="left">F250z00</td>
<td align="left">Generalised nonconvulsive epilepsy NOS</td>
</tr>
<tr>
<td align="left">F251000</td>
<td align="left">Grand mal (major) epilepsy</td>
</tr>
<tr>
<td align="left">F251011</td>
<td align="left">Tonic-clonic epilepsy</td>
</tr>
<tr>
<td align="left">F251100</td>
<td align="left">Neonatal myoclonic epilepsy</td>
</tr>
<tr>
<td align="left">F251111</td>
<td align="left">Otohara syndrome</td>
</tr>
<tr>
<td align="left">F251200</td>
<td align="left">Epileptic seizures - clonic</td>
</tr>
<tr>
<td align="left">F251300</td>
<td align="left">Epileptic seizures - myoclonic</td>
</tr>
<tr>
<td align="left">F251400</td>
<td align="left">Epileptic seizures - tonic</td>
</tr>
<tr>
<td align="left">F251500</td>
<td align="left">Tonic-clonic epilepsy</td>
</tr>
<tr>
<td align="left">F251.00</td>
<td align="left">Generalised convulsive epilepsy</td>
</tr>
<tr>
<td align="left">F251y00</td>
<td align="left">Other specified generalised convulsive epilepsy</td>
</tr>
<tr>
<td align="left">F251z00</td>
<td align="left">Generalised convulsive epilepsy NOS</td>
</tr>
<tr>
<td align="left">F252.00</td>
<td align="left">Petit mal status</td>
</tr>
<tr>
<td align="left">F253.00</td>
<td align="left">Grand mal status</td>
</tr>
<tr>
<td align="left">F253.11</td>
<td align="left">Status epilepticus</td>
</tr>
<tr>
<td align="left">F254000</td>
<td align="left">Temporal lobe epilepsy</td>
</tr>
<tr>
<td align="left">F254100</td>
<td align="left">Psychomotor epilepsy</td>
</tr>
<tr>
<td align="left">F254200</td>
<td align="left">Psychosensory epilepsy</td>
</tr>
<tr>
<td align="left">F254300</td>
<td align="left">Limbic system epilepsy</td>
</tr>
<tr>
<td align="left">F254400</td>
<td align="left">Epileptic automatism</td>
</tr>
<tr>
<td align="left">F254500</td>
<td align="left">Complex partial epileptic seizure</td>
</tr>
<tr>
<td align="left">F254.00</td>
<td align="left">Partial epilepsy with impairment of consciousness</td>
</tr>
<tr>
<td align="left">F254z00</td>
<td align="left">Partial epilepsy with impairment of consciousness NOS</td>
</tr>
<tr>
<td align="left">F255000</td>
<td align="left">Jacksonian, focal or motor epilepsy</td>
</tr>
<tr>
<td align="left">F255011</td>
<td align="left">Focal epilepsy</td>
</tr>
<tr>
<td align="left">F255012</td>
<td align="left">Motor epilepsy</td>
</tr>
<tr>
<td align="left">F255100</td>
<td align="left">Sensory induced epilepsy</td>
</tr>
<tr>
<td align="left">F255200</td>
<td align="left">Somatosensory epilepsy</td>
</tr>
<tr>
<td align="left">F255300</td>
<td align="left">Visceral reflex epilepsy</td>
</tr>
<tr>
<td align="left">F255311</td>
<td align="left">Partial epilepsy with autonomic symptoms</td>
</tr>
<tr>
<td align="left">F255400</td>
<td align="left">Visual reflex epilepsy</td>
</tr>
<tr>
<td align="left">F255500</td>
<td align="left">Unilateral epilepsy</td>
</tr>
<tr>
<td align="left">F255600</td>
<td align="left">Simple partial epileptic seizure</td>
</tr>
<tr>
<td align="left">F255.00</td>
<td align="left">Partial epilepsy without impairment of consciousness</td>
</tr>
<tr>
<td align="left">F255y00</td>
<td align="left">Partial epilepsy without impairment of consciousness OS</td>
</tr>
<tr>
<td align="left">F255z00</td>
<td align="left">Partial epilepsy without impairment of consciousness NOS</td>
</tr>
<tr>
<td align="left">F256000</td>
<td align="left">Hypsarrhythmia</td>
</tr>
<tr>
<td align="left">F256100</td>
<td align="left">Salaam attacks</td>
</tr>
<tr>
<td align="left">F256.00</td>
<td align="left">Infantile spasms</td>
</tr>
<tr>
<td align="left">F256.11</td>
<td align="left">Lightning spasms</td>
</tr>
<tr>
<td align="left">F256.12</td>
<td align="left">West syndrome</td>
</tr>
<tr>
<td align="left">F256z00</td>
<td align="left">Infantile spasms NOS</td>
</tr>
<tr>
<td align="left">F257.00</td>
<td align="left">Kojevnikov's epilepsy</td>
</tr>
<tr>
<td align="left">F258.00</td>
<td align="left">Post-ictal state</td>
</tr>
<tr>
<td align="left">F259.00</td>
<td align="left">Early infant epileptic encephalopathy wth suppression bursts</td>
</tr>
<tr>
<td align="left">F259.11</td>
<td align="left">Ohtahara syndrome</td>
</tr>
<tr>
<td align="left">F25A.00</td>
<td align="left">Juvenile myoclonic epilepsy</td>
</tr>
<tr>
<td align="left">F25B.00</td>
<td align="left">Alcohol-induced epilepsy</td>
</tr>
<tr>
<td align="left">F25C.00</td>
<td align="left">Drug-induced epilepsy</td>
</tr>
<tr>
<td align="left">F25D.00</td>
<td align="left">Menstrual epilepsy</td>
</tr>
<tr>
<td align="left">F25E.00</td>
<td align="left">Stress-induced epilepsy</td>
</tr>
<tr>
<td align="left">F25..00</td>
<td align="left">Epilepsy</td>
</tr>
<tr>
<td align="left">F25F.00</td>
<td align="left">Photosensitive epilepsy</td>
</tr>
<tr>
<td align="left">F25G.00</td>
<td align="left">Severe myoclonic epilepsy in infancy</td>
</tr>
<tr>
<td align="left">F25G.11</td>
<td align="left">Dravet syndrome</td>
</tr>
<tr>
<td align="left">F25X.00</td>
<td align="left">Status epilepticus, unspecified</td>
</tr>
<tr>
<td align="left">F25y000</td>
<td align="left">Cursive (running) epilepsy</td>
</tr>
<tr>
<td align="left">F25y100</td>
<td align="left">Gelastic epilepsy</td>
</tr>
<tr>
<td align="left">F25y200</td>
<td align="left">Locl-rlt(foc)(part)idiop epilep&epilptic syn seiz locl onset</td>
</tr>
<tr>
<td align="left">F25y300</td>
<td align="left">Complex partial status epilepticus</td>
</tr>
<tr>
<td align="left">F25y400</td>
<td align="left">Benign Rolandic epilepsy</td>
</tr>
<tr>
<td align="left">F25y500</td>
<td align="left">Panayiotopoulos syndrome</td>
</tr>
<tr>
<td align="left">F25y.00</td>
<td align="left">Other forms of epilepsy</td>
</tr>
<tr>
<td align="left">F25yz00</td>
<td align="left">Other forms of epilepsy NOS</td>
</tr>
<tr>
<td align="left">F25z.00</td>
<td align="left">Epilepsy NOS</td>
</tr>
<tr>
<td align="left">F25z.11</td>
<td align="left">Fit (in known epileptic) NOS</td>
</tr>
<tr>
<td align="left">Fyu5000</td>
<td align="left">[X]Other generalized epilepsy and epileptic syndromes</td>
</tr>
<tr>
<td align="left">Fyu5100</td>
<td align="left">[X]Other epilepsy</td>
</tr>
<tr>
<td align="left">Fyu5200</td>
<td align="left">[X]Other status epilepticus</td>
</tr>
<tr>
<td align="left">Fyu5900</td>
<td align="left">[X]Status epilepticus, unspecified</td>
</tr>
</tbody>
</table>
<h4>Secondary care diagnoses (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//secondary_care/ICD_epilepsy.csv'>ICD_epilepsy.csv</a>)</h4>
<table>
<thead>
<tr>
<th>ICD-10 code</th>
<th>ICD-10 Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left">G40</td>
<td align="left">Epilepsy</td>
</tr>
<tr>
<td align="left">G41</td>
<td align="left">Status epilepticus</td>
</tr>
</tbody>
</table>
<h2>Erectile dysfunction</h2>
<h4>Implementation</h4>
~~~
At the specified date, a patient is defined as having had 'Erectile dysfunction' IF they meet the criteria for any of the following on or before the specified date. The earliest date on which the individual meets any of the following criteria on or before the specified date is defined as the first event date:
Primary care
1. 'Erectile dysfunction' diagnosis or history of diagnosis during or procedure a consultation
OR
2. 'Erectile dysfunction' possible diagnosis during a consultation IF patient = male
OR
Secondary care
1. ALL diagnoses of 'Erectile dysfunction' or history of diagnosis during a hospitalization
OR
2. ALL possible diagnosis of 'Erectile dysfunction' during a hospitalization IF patient = male
~~~
<h4>Primary care (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//primary_care/CPRD_ED.csv'>CPRD_ED.csv</a>)</h4>
<table>
<thead>
<tr>
<th>Read code</th>
<th>Read Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left">1ABB.00</td>
<td align="left">Cannot get an erection</td>
</tr>
<tr>
<td align="left">1ABC.00</td>
<td align="left">Cannot sustain an erection</td>
</tr>
<tr>
<td align="left">1D1B.00</td>
<td align="left">C/O erectile dysfunction</td>
</tr>
<tr>
<td align="left">7A6G000</td>
<td align="left">Revascularisation for impotence</td>
</tr>
<tr>
<td align="left">7A6G500</td>
<td align="left">Ligation of penile veins for impotence</td>
</tr>
<tr>
<td align="left">7C25B00</td>
<td align="left">Penile injection to produce erection</td>
</tr>
<tr>
<td align="left">7C25E00</td>
<td align="left">Treatment of erectile dysfunction NEC</td>
</tr>
<tr>
<td align="left">7C25F00</td>
<td align="left">Operations on penis for erectile dysfunction NEC</td>
</tr>
<tr>
<td align="left">8BB4.00</td>
<td align="left">Erect dysf unresponsiv to phosphodiesterase-5 inhibitor</td>
</tr>
<tr>
<td align="left">8HTj.00</td>
<td align="left">Referral to erectile dysfunction clinic</td>
</tr>
<tr>
<td align="left">E227300</td>
<td align="left">Impotence</td>
</tr>
<tr>
<td align="left">E227311</td>
<td align="left">Erectile dysfunction</td>
</tr>
<tr>
<td align="left">Eu52200</td>
<td align="left">[X]Failure of genital response</td>
</tr>
<tr>
<td align="left">Eu52212</td>
<td align="left">[X]Male erectile disorder</td>
</tr>
<tr>
<td align="left">Eu52213</td>
<td align="left">[X]Psychogenic impotence</td>
</tr>
<tr>
<td align="left">K27y100</td>
<td align="left">Impotence of organic origin</td>
</tr>
<tr>
<td align="left">K27y700</td>
<td align="left">Erectile dysfunction due to diabetes mellitus</td>
</tr>
<tr>
<td align="left">Z9E9.00</td>
<td align="left">Provision of device for impotence</td>
</tr>
<tr>
<td align="left">ZG43600</td>
<td align="left">Advice on technique for impotence</td>
</tr>
</tbody>
</table>
<h4>Secondary care diagnoses (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//secondary_care/ICD_ED.csv'>ICD_ED.csv</a>)</h4>
<table>
<thead>
<tr>
<th>ICD-10 code</th>
<th>ICD-10 Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left">F52.2</td>
<td align="left">Failure of genital response</td>
</tr>
<tr>
<td align="left">N48.4</td>
<td align="left">Impotence of organic origin</td>
</tr>
</tbody>
</table>
<h2>Essential tremor</h2>
<h4>Implementation</h4>
~~~
At the specified date, a patient is defined as having had 'Essential tremor' IF they meet the criteria for any of the following on or before the specified date. The earliest date on which the individual meets any of the following criteria on or before the specified date is defined as the first event date:
Primary care
1. 'Essential tremor' diagnosis or history of diagnosis during a consultation
OR
Secondary care
1. ALL diagnoses of 'Essential tremor' or history of diagnosis during a hospitalization
~~~
<h4>Primary care (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//primary_care/CPRD_essential_tremor.csv'>CPRD_essential_tremor.csv</a>)</h4>
<table>
<thead>
<tr>
<th>Read code</th>
<th>Read Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left">F131000</td>
<td align="left">Benign essential tremor</td>
</tr>
<tr>
<td align="left">F131100</td>
<td align="left">Familial tremor</td>
</tr>
</tbody>
</table>
<h4>Secondary care diagnoses (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//secondary_care/ICD_essential_tremor.csv'>ICD_essential_tremor.csv</a>)</h4>
<table>
<thead>
<tr>
<th>ICD-10 code</th>
<th>ICD-10 Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left">G25.0</td>
<td align="left">Essential tremor</td>
</tr>
</tbody>
</table>
<h2>Eye infections</h2>
<h4>Implementation</h4>
~~~
At the specified date, a patient is defined as having had Eye infections IF they meet the criteria for any of the following on or before the specified date. The earliest date on which the individual meets any of the following criteria on or before the specified date is defined as the first event date:
Secondary care
1. ALL diagnoses of Eye infections or history of diagnosis during a hospitalization
~~~
<h4>Secondary care diagnoses (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//secondary_care/ICD_eye.csv'>ICD_eye.csv</a>)</h4>
<table>
<thead>
<tr>
<th>ICD-10 code</th>
<th>ICD-10 Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left">A18.5</td>
<td align="left">Tuberculosis of eye</td>
</tr>
<tr>
<td align="left">A21.1</td>
<td align="left">Oculoglandular tularaemia</td>
</tr>
<tr>
<td align="left">A54.3</td>
<td align="left">Gonococcal infection of eye</td>
</tr>
<tr>
<td align="left">A71</td>
<td align="left">Trachoma</td>
</tr>
<tr>
<td align="left">A74.0</td>
<td align="left">Chlamydial conjunctivitis</td>
</tr>
<tr>
<td align="left">B00.5</td>
<td align="left">Herpesviral ocular disease</td>
</tr>
<tr>
<td align="left">B02.3</td>
<td align="left">Zoster ocular disease</td>
</tr>
<tr>
<td align="left">B30</td>
<td align="left">Viral conjunctivitis</td>
</tr>
<tr>
<td align="left">B58.0</td>
<td align="left">Toxoplasma oculopathy</td>
</tr>
<tr>
<td align="left">B69.1</td>
<td align="left">Cysticercosis of eye</td>
</tr>
<tr>
<td align="left">B87.2</td>
<td align="left">Ocular myiasis</td>
</tr>
<tr>
<td align="left">B94.0</td>
<td align="left">Sequelae of trachoma</td>
</tr>
<tr>
<td align="left">H00.0</td>
<td align="left">Hordeolum and other deep inflammation of eyelid</td>
</tr>
<tr>
<td align="left">H10</td>
<td align="left">Conjunctivitis</td>
</tr>
<tr>
<td align="left">H13.1</td>
<td align="left">Conjunctivitis in infectious and parasitic diseases classified elsewhere</td>
</tr>
<tr>
<td align="left">H19.1</td>
<td align="left">Herpesviral keratitis and keratoconjunctivitis</td>
</tr>
<tr>
<td align="left">H19.2</td>
<td align="left">Keratitis and keratoconjunctivitis in other infectious and parasitic diseases classified elsewhere</td>
</tr>
<tr>
<td align="left">P39.1</td>
<td align="left">Neonatal conjunctivitis and dacryocystitis</td>
</tr>
</tbody>
</table>
<h2>Fatty Liver</h2>
<h4>Implementation</h4>
~~~
At the specified date, a patient is defined as having had 'Fatty Liver' IF they meet the criteria for any of the following on or before the specified date. The earliest date on which the individual meets any of the following criteria on or before the specified date is defined as the first event date:
Primary care
1. 'Fatty Liver' diagnosis or history of diagnosis or procedure during a consultation
OR
Secondary care
1. ALL diagnoses of 'Fatty Liver' or history of diagnosis during a hospitalization
~~~
<h4>Primary care (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//primary_care/CPRD_fatty_liver.csv'>CPRD_fatty_liver.csv</a>)</h4>
<table>
<thead>
<tr>
<th>Read code</th>
<th>Read Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left">J610.00</td>
<td align="left">Alcoholic fatty liver</td>
</tr>
<tr>
<td align="left">J61y700</td>
<td align="left">Steatosis of liver</td>
</tr>
<tr>
<td align="left">J61y800</td>
<td align="left">Nonalcoholic steatohepatitis</td>
</tr>
<tr>
<td align="left">J61y900</td>
<td align="left">Fatty change of liver</td>
</tr>
<tr>
<td align="left">J61y911</td>
<td align="left">Fatty liver</td>
</tr>
</tbody>
</table>
<h4>Secondary care diagnoses (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//secondary_care/ICD_fatty_liver.csv'>ICD_fatty_liver.csv</a>)</h4>
<table>
<thead>
<tr>
<th>ICD-10 code</th>
<th>ICD-10 Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left">K70.0</td>
<td align="left">Alcoholic fatty liver</td>
</tr>
<tr>
<td align="left">K75.8</td>
<td align="left">Other specified inflammatory liver diseases</td>
</tr>
<tr>
<td align="left">K76.0</td>
<td align="left">Fatty (change of) liver, not elsewhere classified</td>
</tr>
</tbody>
</table>
<h2>Female genital prolapse</h2>
<h4>Implementation</h4>
~~~
At the specified date, a patient is defined as having had Female genital prolapse IF they meet the criteria for any of the following on or before the specified date. The earliest date on which the individual meets any of the following criteria on or before the specified date is defined as the first event date:
Primary care
1. Female genital prolapse diagnosis or history of diagnosis or procedure during a consultation
OR
Secondary care
1. ALL diagnoses of Female genital prolapse or history of diagnosis during a hospitalization
~~~
<h4>Primary care (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//primary_care/CPRD_female_genital_prolapse.csv'>CPRD_female_genital_prolapse.csv</a>)</h4>
<table>
<thead>
<tr>
<th>Read code</th>
<th>Read Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="right">1594</td>
<td align="left">H/O: genital prolapse</td>
</tr>
<tr>
<td align="left">7D17000</td>
<td align="left">Ant and post colporrhaphy and amputation of cervix uteri</td>
</tr>
<tr>
<td align="left">7D17100</td>
<td align="left">Anterior colporrhaphy and amputation of cervix uteri NEC</td>
</tr>
<tr>
<td align="left">7D17111</td>
<td align="left">Fothergill anterior colporrhaphy and amputation of cervix</td>
</tr>
<tr>
<td align="left">7D17200</td>
<td align="left">Posterior colporrhaphy and amputation of cervix uteri NEC</td>
</tr>
<tr>
<td align="left">7D17.00</td>
<td align="left">Repair of vaginal prolapse and amputation of cervix uteri</td>
</tr>
<tr>
<td align="left">7D17.11</td>
<td align="left">Colporrhaphy and amputation of cervix uteri</td>
</tr>
<tr>
<td align="left">7D17y00</td>
<td align="left">Repair of vaginal prolapse & amputation of cervix uteri OS</td>
</tr>
<tr>
<td align="left">7D17z00</td>
<td align="left">Repair of vaginal prolapse & amputation of cervix uteri NOS</td>
</tr>
<tr>
<td align="left">7D17z11</td>
<td align="left">Manchester repair</td>
</tr>
<tr>
<td align="left">7D18000</td>
<td align="left">Anterior and posterior colporrhaphy NEC</td>
</tr>
<tr>
<td align="left">7D18011</td>
<td align="left">Anterior and posterior repair</td>
</tr>
<tr>
<td align="left">7D18100</td>
<td align="left">Anterior colporrhaphy NEC</td>
</tr>
<tr>
<td align="left">7D18111</td>
<td align="left">Anterior repair</td>
</tr>
<tr>
<td align="left">7D18200</td>
<td align="left">Posterior colporrhaphy NEC</td>
</tr>
<tr>
<td align="left">7D18211</td>
<td align="left">Posterior repair</td>
</tr>
<tr>
<td align="left">7D18300</td>
<td align="left">Repair of enterocele NEC</td>
</tr>
<tr>
<td align="left">7D18311</td>
<td align="left">McCall repair of enterocele</td>
</tr>
<tr>
<td align="left">7D18312</td>
<td align="left">Moschowitz repair of enterocele</td>
</tr>
<tr>
<td align="left">7D18400</td>
<td align="left">Colporrhaphy NEC</td>
</tr>
<tr>
<td align="left">7D18500</td>
<td align="left">Anterior mesh vaginal repair</td>
</tr>
<tr>
<td align="left">7D18600</td>
<td align="left">Paravaginal repair</td>
</tr>
<tr>
<td align="left">7D18700</td>
<td align="left">Anterior colporrhaphy with mesh reinforcement</td>
</tr>
<tr>
<td align="left">7D18.00</td>
<td align="left">Other repair of vaginal prolapse</td>
</tr>
<tr>
<td align="left">7D18.11</td>
<td align="left">Colporrhaphy</td>
</tr>
<tr>
<td align="left">7D18800</td>
<td align="left">Posterior colporrhaphy with mesh reinforcement</td>
</tr>
<tr>
<td align="left">7D18y00</td>
<td align="left">Other specified other repair of vaginal prolapse</td>
</tr>
<tr>
<td align="left">7D18z00</td>
<td align="left">Other repair of vaginal prolapse NOS</td>
</tr>
<tr>
<td align="left">7D19000</td>
<td align="left">Repair vaginal vault combined abdominal & vaginal approach</td>
</tr>
<tr>
<td align="left">7D19100</td>
<td align="left">Repair of vault of vagina using abdominal approach NEC</td>
</tr>
<tr>
<td align="left">7D19200</td>
<td align="left">Repair of vault of vagina using vaginal approach NEC</td>
</tr>
<tr>
<td align="left">7D19300</td>
<td align="left">Sacrocolpopexy</td>
</tr>
<tr>
<td align="left">7D19400</td>
<td align="left">Suspension of vagina NEC</td>
</tr>
<tr>
<td align="left">7D19500</td>
<td align="left">Sacrospinous fixation of vaginal vault</td>
</tr>
<tr>
<td align="left">7D19600</td>
<td align="left">Repair of vault of vagina with mesh using abdominal approach</td>
</tr>
<tr>
<td align="left">7D19700</td>
<td align="left">Repair of vault of vagina with mesh using vaginal approach</td>
</tr>
<tr>
<td align="left">7D19.00</td>
<td align="left">Repair of vault of vagina</td>
</tr>
<tr>
<td align="left">7D19y00</td>
<td align="left">Other specified repair of vault of vagina</td>
</tr>
<tr>
<td align="left">7D19z00</td>
<td align="left">Repair of vault of vagina NOS</td>
</tr>
<tr>
<td align="left">7D1A411</td>
<td align="left">Colpoperineorrhaphy</td>
</tr>
<tr>
<td align="left">7D1B000</td>
<td align="left">Insertion of Hodge pessary into vagina</td>
</tr>
<tr>
<td align="left">7D1B100</td>
<td align="left">Insertion of ring into vagina</td>
</tr>
<tr>
<td align="left">7D1B200</td>
<td align="left">Removal of supporting pessary from vagina</td>
</tr>
<tr>
<td align="left">7D1B300</td>
<td align="left">Change of vaginal pessary</td>
</tr>
<tr>
<td align="left">7D1B400</td>
<td align="left">Removal of ring pessary from vagina</td>
</tr>
<tr>
<td align="left">7D1B500</td>
<td align="left">Renewal of supporting pessary in vagina</td>
</tr>
<tr>
<td align="left">7D1B600</td>
<td align="left">Insertion of ring pessary into vagina</td>
</tr>
<tr>
<td align="left">7D1B.00</td>
<td align="left">Introduction of supporting pessary into vagina</td>
</tr>
<tr>
<td align="left">7D1By00</td>
<td align="left">Introduction of supporting pessary into vagina OS</td>
</tr>
<tr>
<td align="left">7D1Bz00</td>
<td align="left">Introduction of supporting pessary into vagina NOS</td>
</tr>
<tr>
<td align="left">K510000</td>
<td align="left">Cystocele without uterine prolapse</td>
</tr>
<tr>
<td align="left">K510100</td>
<td align="left">Cystourethrocele without uterine prolapse</td>
</tr>
<tr>
<td align="left">K510200</td>
<td align="left">Rectocele without uterine prolapse</td>
</tr>
<tr>
<td align="left">K510211</td>
<td align="left">Proctocele without uterine prolapse</td>
</tr>
<tr>
<td align="left">K510300</td>
<td align="left">Urethrocele without uterine prolapse</td>
</tr>
<tr>
<td align="left">K510400</td>
<td align="left">Vaginal prolapse unspecified without uterine prolapse</td>
</tr>
<tr>
<td align="left">K510.00</td>
<td align="left">Vaginal wall prolapse without uterine prolapse</td>
</tr>
<tr>
<td align="left">K510z00</td>
<td align="left">Vaginal prolapse without uterine prolapse NOS</td>
</tr>
<tr>
<td align="left">K511000</td>
<td align="left">First degree uterine prolapse</td>
</tr>
<tr>
<td align="left">K511100</td>
<td align="left">Second degree uterine prolapse</td>
</tr>
<tr>
<td align="left">K511200</td>
<td align="left">Third degree uterine prolapse</td>
</tr>
<tr>
<td align="left">K511.00</td>
<td align="left">Uterine prolapse without vaginal wall prolapse</td>
</tr>
<tr>
<td align="left">K511.11</td>
<td align="left">Descens uteri</td>
</tr>
<tr>
<td align="left">K511z00</td>
<td align="left">Uterine prolapse without vaginal wall prolapse NOS</td>
</tr>
<tr>
<td align="left">K512000</td>
<td align="left">Cystocele with first degree uterine prolapse</td>
</tr>
<tr>
<td align="left">K512100</td>
<td align="left">Cystocele with second degree uterine prolapse</td>
</tr>
<tr>
<td align="left">K512.00</td>
<td align="left">Uterovaginal prolapse, incomplete</td>
</tr>
<tr>
<td align="left">K513000</td>
<td align="left">Cystocele with third degree uterine prolapse</td>
</tr>
<tr>
<td align="left">K513.00</td>
<td align="left">Uterovaginal prolapse, complete</td>
</tr>
<tr>
<td align="left">K513.11</td>
<td align="left">Procidentia - uterine</td>
</tr>
<tr>
<td align="left">K514000</td>
<td align="left">Cystocele with unspecified uterine prolapse</td>
</tr>
<tr>
<td align="left">K514.00</td>
<td align="left">Uterovaginal prolapse, unspecified</td>
</tr>
<tr>
<td align="left">K515.00</td>
<td align="left">Post hysterectomy vaginal vault prolapse</td>
</tr>
<tr>
<td align="left">K516100</td>
<td align="left">Acquired vaginal enterocele</td>
</tr>
<tr>
<td align="left">K516.00</td>
<td align="left">Vaginal enterocele</td>
</tr>
<tr>
<td align="left">K516.11</td>
<td align="left">Pelvic enterocele</td>
</tr>
<tr>
<td align="left">K516z00</td>
<td align="left">Vaginal enterocele NOS</td>
</tr>
<tr>
<td align="left">K517.00</td>
<td align="left">Old laceration of pelvic floor muscle</td>
</tr>
<tr>
<td align="left">K518.00</td>
<td align="left">Female rectocele</td>
</tr>
<tr>
<td align="left">K519.00</td>
<td align="left">Cystocele</td>
</tr>
<tr>
<td align="left">K51..00</td>
<td align="left">Genital prolapse</td>
</tr>
<tr>
<td align="left">K51y000</td>
<td align="left">Incompetence of pelvic fundus</td>
</tr>
<tr>
<td align="left">K51y100</td>
<td align="left">Weakening of pelvic fundus</td>
</tr>
<tr>
<td align="left">K51y300</td>
<td align="left">Relaxation of pelvis</td>
</tr>
<tr>
<td align="left">K51y.00</td>
<td align="left">Other genital prolapse</td>
</tr>
<tr>
<td align="left">K51yz00</td>
<td align="left">Other genital prolapse NOS</td>
</tr>
<tr>
<td align="left">K51z.00</td>
<td align="left">Genital prolapse NOS</td>
</tr>
<tr>
<td align="left">Kyu9100</td>
<td align="left">[X]Other female genital prolapse</td>
</tr>
<tr>
<td align="left">SP07900</td>
<td align="left">Problem with vaginal pessary</td>
</tr>
</tbody>
</table>
<h4>Secondary care diagnoses (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//secondary_care/ICD_female_genital_prolapse.csv'>ICD_female_genital_prolapse.csv</a>)</h4>
<table>
<thead>
<tr>
<th>ICD-10 code</th>
<th>ICD-10 Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left">N81</td>
<td align="left">Female genital prolapse</td>
</tr>
</tbody>
</table>
<h2>Female infertility</h2>
<h4>Implementation</h4>
~~~
At the specified date, a patient is defined as having had 'Female infertility' IF they meet the criteria for any of the following on or before the specified date. The earliest date on which the individual meets any of the following criteria on or before the specified date is defined as the first event date:
Primary care
1. 'Female infertility' diagnosis or history of diagnosis during a consultation
OR
2. 'Female infertility' possible diagnosis during a consultation IF patient = female
OR
Secondary care
1. ALL diagnoses of 'Female infertility' or history of diagnosis during a hospitalization
~~~
<h4>Primary care (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//primary_care/CPRD_female_infertility.csv'>CPRD_female_infertility.csv</a>)</h4>
<table>
<thead>
<tr>
<th>Read code</th>
<th>Read Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left">K26y300</td>
<td align="left">Infertility due to radiation</td>
</tr>
<tr>
<td align="left">K26y400</td>
<td align="left">Infertility in systemic disease</td>
</tr>
<tr>
<td align="left">K5B0000</td>
<td align="left">Primary anovulatory infertility</td>
</tr>
<tr>
<td align="left">K5B0100</td>
<td align="left">Secondary anovulatory infertility</td>
</tr>
<tr>
<td align="left">K5B0.00</td>
<td align="left">Female infertility of anovulatory origin</td>
</tr>
<tr>
<td align="left">K5B0.11</td>
<td align="left">Anovular cycle</td>
</tr>
<tr>
<td align="left">K5B0z00</td>
<td align="left">Female infertility of anovulatory origin NOS</td>
</tr>
<tr>
<td align="left">K5B1000</td>
<td align="left">Primary pituitary - hypothalamic infertility</td>
</tr>
<tr>
<td align="left">K5B1100</td>
<td align="left">Secondary pituitary - hypothalamic infertility</td>
</tr>
<tr>
<td align="left">K5B1.00</td>
<td align="left">Female infertility of pituitary - hypothalamic origin</td>
</tr>
<tr>
<td align="left">K5B1z00</td>
<td align="left">Female infertility of pituitary - hypothalamic cause NOS</td>
</tr>
<tr>
<td align="left">K5B2000</td>
<td align="left">Primary tubal infertility</td>
</tr>
<tr>
<td align="left">K5B2100</td>
<td align="left">Secondary tubal infertility</td>
</tr>
<tr>
<td align="left">K5B2300</td>
<td align="left">Blocked fallopian tube</td>
</tr>
<tr>
<td align="left">K5B2.00</td>
<td align="left">Female infertility of tubal origin</td>
</tr>
<tr>
<td align="left">K5B2z00</td>
<td align="left">Female infertility of tubal origin NOS</td>
</tr>
<tr>
<td align="left">K5B3000</td>
<td align="left">Primary uterine infertility</td>
</tr>
<tr>
<td align="left">K5B3100</td>
<td align="left">Secondary uterine infertility</td>
</tr>
<tr>
<td align="left">K5B3.00</td>
<td align="left">Female infertility of uterine origin</td>
</tr>
<tr>
<td align="left">K5B3z00</td>
<td align="left">Female infertility of uterine origin NOS</td>
</tr>
<tr>
<td align="left">K5B4000</td>
<td align="left">Primary cervical infertility</td>
</tr>
<tr>
<td align="left">K5B4100</td>
<td align="left">Secondary cervical infertility</td>
</tr>
<tr>
<td align="left">K5B4.00</td>
<td align="left">Female infertility of cervical origin</td>
</tr>
<tr>
<td align="left">K5B5100</td>
<td align="left">Secondary vaginal infertility</td>
</tr>
<tr>
<td align="left">K5B5.00</td>
<td align="left">Female infertility of vaginal origin</td>
</tr>
<tr>
<td align="left">K5B6.00</td>
<td align="left">Female infertility associated with male factors</td>
</tr>
<tr>
<td align="left">K5B7.00</td>
<td align="left">Female infertility due to diminished ovarian reserve</td>
</tr>
<tr>
<td align="left">K5B..00</td>
<td align="left">Infertility - female</td>
</tr>
<tr>
<td align="left">K5By000</td>
<td align="left">Primary infertility unspecified</td>
</tr>
<tr>
<td align="left">K5By100</td>
<td align="left">Secondary infertility unspecified</td>
</tr>
<tr>
<td align="left">K5By.00</td>
<td align="left">Other female infertility</td>
</tr>
<tr>
<td align="left">K5Byz00</td>
<td align="left">Other female infertility NOS</td>
</tr>
<tr>
<td align="left">K5Byz11</td>
<td align="left">Subfertility</td>
</tr>
<tr>
<td align="left">K5Bz.00</td>
<td align="left">Female infertility NOS</td>
</tr>
<tr>
<td align="left">Kyu9G00</td>
<td align="left">[X]Female infertility of other origin</td>
</tr>
</tbody>
</table>
<h4>Secondary care diagnoses (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//secondary_care/ICD_female_infertility.csv'>ICD_female_infertility.csv</a>)</h4>
<table>
<thead>
<tr>
<th>ICD-10 code</th>
<th>ICD-10 Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left">N97</td>
<td align="left">Female infertility</td>
</tr>
</tbody>
</table>
<h2>Female pelvic inflammatory disease</h2>
<h4>Implementation</h4>
~~~
At the specified date, a patient is defined as having had Female 'Female pelvic inflammatory disease' IF they meet the criteria for any of the following on or before the specified date. The earliest date on which the individual meets any of the following criteria on or before the specified date is defined as the first event date:
Secondary care
1. ALL diagnoses of Female 'Female pelvic inflammatory disease' or history of diagnosis during a hospitalization
~~~
<h4>Secondary care diagnoses (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//secondary_care/ICD_PID.csv'>ICD_PID.csv</a>)</h4>
<table>
<thead>
<tr>
<th>ICD-10 code</th>
<th>ICD-10 Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left">N70</td>
<td align="left">Salpingitis and oophoritis</td>
</tr>
<tr>
<td align="left">N71</td>
<td align="left">Inflammatory disease of uterus, except cervix</td>
</tr>
<tr>
<td align="left">N72</td>
<td align="left">Inflammatory disease of cervix uteri</td>
</tr>
<tr>
<td align="left">N73</td>
<td align="left">Other female pelvic inflammatory diseases</td>
</tr>
<tr>
<td align="left">N74</td>
<td align="left">Female pelvic inflammatory disorders in diseases classified elsewhere</td>
</tr>
</tbody>
</table>
<h2>Fibromatoses</h2>
<h4>Implementation</h4>
~~~
At the specified date, a patient is defined as having had 'Fibromatoses' IF they meet the criteria for any of the following on or before the specified date. The earliest date on which the individual meets any of the following criteria on or before the specified date is defined as the first event date:
Primary care
1. 'Fibromatoses' diagnosis or history of diagnosis or procedure during a consultation
OR
Secondary care (ICD10)
1. ALL diagnoses of 'Fibromatoses' or history of diagnosis during a hospitalization
OR
Secondary care (OPCS4)
1. ALL procedures for 'Fibromatoses' during a hospitalization
~~~
<h4>Primary care (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//primary_care/CPRD_fibromatosis.csv'>CPRD_fibromatosis.csv</a>)</h4>
<table>
<thead>
<tr>
<th>Read code</th>
<th>Read Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left">7H32000</td>
<td align="left">Palmar fasciectomy unspecified</td>
</tr>
<tr>
<td align="left">7H32011</td>
<td align="left">Dupuytren hand fasciectomy</td>
</tr>
<tr>
<td align="left">7H32013</td>
<td align="left">McIndoe radical palmar fasciectomy</td>
</tr>
<tr>
<td align="left">7H32100</td>
<td align="left">Revision of palmar fasciectomy</td>
</tr>
<tr>
<td align="left">7H32400</td>
<td align="left">Limited palmar fasciectomy</td>
</tr>
<tr>
<td align="left">7H32500</td>
<td align="left">Radical palmar fasciectomy</td>
</tr>
<tr>
<td align="left">7H32700</td>
<td align="left">Palmar fasciectomy using open palm technique</td>
</tr>
<tr>
<td align="left">7H34000</td>
<td align="left">Division of palmar fascia</td>
</tr>
<tr>
<td align="left">7H34011</td>
<td align="left">Division of hand fascia</td>
</tr>
<tr>
<td align="left">7H34012</td>
<td align="left">Dupuytren hand fasciotomy</td>
</tr>
<tr>
<td align="left">7H34300</td>
<td align="left">Needle fasciotomy of hand</td>
</tr>
<tr>
<td align="left">7H35700</td>
<td align="left">Fasciotomy hand</td>
</tr>
<tr>
<td align="left">N236000</td>
<td align="left">Dupuytren's disease of palm</td>
</tr>
<tr>
<td align="left">N236100</td>
<td align="left">Dupuytren's disease of palm, nodules with no contracture</td>
</tr>
<tr>
<td align="left">N236200</td>
<td align="left">Dupuytren's disease of palm, with contracture</td>
</tr>
<tr>
<td align="left">N236300</td>
<td align="left">Dupuytren's disease of finger(s)</td>
</tr>
<tr>
<td align="left">N236400</td>
<td align="left">Dupuytren's disease - finger(s), nodules with no contracture</td>
</tr>
<tr>
<td align="left">N236500</td>
<td align="left">Dupuytren's disease of finger(s), with contracture</td>
</tr>
<tr>
<td align="left">N236600</td>
<td align="left">Dupuytren's disease of palm and finger(s)</td>
</tr>
<tr>
<td align="left">N236700</td>
<td align="left">Dupuytren's dis, palm and finger(s), nodules, no contracture</td>
</tr>
<tr>
<td align="left">N236800</td>
<td align="left">Dupuytren's disease of palm and finger(s), with contracture</td>
</tr>
<tr>
<td align="left">N236.00</td>
<td align="left">Dupuytren's contracture</td>
</tr>
<tr>
<td align="left">N236.11</td>
<td align="left">Palmar fascia contracture</td>
</tr>
<tr>
<td align="left">N237100</td>
<td align="left">Knuckle pads</td>
</tr>
</tbody>
</table>
<h4>Secondary care diagnoses (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//secondary_care/ICD_fibromatosis.csv'>ICD_fibromatosis.csv</a>)</h4>
<table>
<thead>
<tr>
<th>ICD-10 code</th>
<th>ICD-10 Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left">M72.0</td>
<td align="left">Palmar fascial fibromatosis [Dupuytren]</td>
</tr>
<tr>
<td align="left">M72.1</td>
<td align="left">Knuckle pads</td>
</tr>
</tbody>
</table>
<h4>Secondary care procedures (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//secondary_care/OPCS_fibromatosis.csv'>OPCS_fibromatosis.csv</a>)</h4>
<table>
<thead>
<tr>
<th>OPCS-4 code</th>
<th>OPCS-4 Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left">T52.1</td>
<td align="left">Palmar fasciectomy</td>
</tr>
<tr>
<td align="left">T52.2</td>
<td align="left">Revision of palmar fasciectomy</td>
</tr>
<tr>
<td align="left">T54.1</td>
<td align="left">Division of palmar fascia</td>
</tr>
</tbody>
</table>
<h2>Folate deficiency anaemia</h2>
<h4>Implementation</h4>
~~~
At the specified date, a patient is defined as having had 'Folate deficiency anaemia' IF they meet the criteria for any of the following on or before the specified date. The earliest date on which the individual meets any of the following criteria on or before the specified date is defined as the first event date:
Primary care
1. Folate deficiency anaemia diagnosis or history of diagnosis during a consultation
OR
Secondary care (ICD10)
1. ALL diagnoses of 'Folate deficiency anaemia' or history of diagnosis during a hospitalization
~~~
<h4>Primary care (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//primary_care/CPRD_folatedef.csv'>CPRD_folatedef.csv</a>)</h4>
<table>
<thead>
<tr>
<th>Read code</th>
<th>Read Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left">C262000</td>
<td align="left">Folic acid deficiency</td>
</tr>
<tr>
<td align="left">D012100</td>
<td align="left">Folate-deficiency anaemia due to dietary causes</td>
</tr>
<tr>
<td align="left">D012111</td>
<td align="left">Goat's milk anaemia</td>
</tr>
<tr>
<td align="left">D012200</td>
<td align="left">Folate-deficiency anaemia, drug induced</td>
</tr>
<tr>
<td align="left">D012300</td>
<td align="left">Folate-deficiency anaemia due to malabsorption</td>
</tr>
<tr>
<td align="left">D012400</td>
<td align="left">Folate-deficiency anaemia due to liver disorders</td>
</tr>
<tr>
<td align="left">D012.00</td>
<td align="left">Folate-deficiency anaemia</td>
</tr>
<tr>
<td align="left">D012.11</td>
<td align="left">Folic acid deficiency anaemia</td>
</tr>
<tr>
<td align="left">D012z00</td>
<td align="left">Folate-deficiency anaemia NOS</td>
</tr>
<tr>
<td align="left">D013000</td>
<td align="left">Combined B12 and folate deficiency anaemia</td>
</tr>
<tr>
<td align="left">Dyu0300</td>
<td align="left">[X]Other folate deficiency anaemias</td>
</tr>
</tbody>
</table>
<h4>Secondary care diagnoses (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//secondary_care/ICD_folatedef.csv'>ICD_folatedef.csv</a>)</h4>
<table>
<thead>
<tr>
<th>ICD-10 code</th>
<th>ICD-10 Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left">D52</td>
<td align="left">Folate deficiency anaemia</td>
</tr>
</tbody>
</table>
<h2>Fracture of hip</h2>
<h4>Implementation</h4>
~~~
At the specified date, a patient is defined as having had Fracture of hip IF they meet the criteria for any of the following on or before the specified date. The earliest date on which the individual meets any of the following criteria on or before the specified date is defined as the first event date:
Primary care
1. Fracture of hip diagnosis or history of diagnosis or procedure during a consultation
OR
Secondary care (ICD10)
1. ALL diagnoses of Fracture of hip or history of diagnosis during a hospitalization
OR
Secondary care (OPCS4)
1. ALL procedures for Fracture of hip during a hospitalization
~~~
<h4>Primary care (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//primary_care/CPRD_fracture_hip.csv'>CPRD_fracture_hip.csv</a>)</h4>
<table>
<thead>
<tr>
<th>Read code</th>
<th>Read Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left">14G7.00</td>
<td align="left">H/O: hip fracture</td>
</tr>
<tr>
<td align="left">7K1D000</td>
<td align="left">Prmy open red+int fxn prox femoral #+screw/nail+plate device</td>
</tr>
<tr>
<td align="left">7K1D011</td>
<td align="left">Prim open reduct # neck femur & op fix - Blount nail plate</td>
</tr>
<tr>
<td align="left">7K1D012</td>
<td align="left">Prim op red # nck femur & op fix- Charnley compression screw</td>
</tr>
<tr>
<td align="left">7K1D013</td>
<td align="left">Prim op red # nck femur & op fix - Deyerle multiple hip pin</td>
</tr>
<tr>
<td align="left">7K1D014</td>
<td align="left">Prim open reduct # neck femur & op fix - Holt nail</td>
</tr>
<tr>
<td align="left">7K1D015</td>
<td align="left">Prim open reduct # neck femur & op fix - Jewett nail plate</td>
</tr>
<tr>
<td align="left">7K1D016</td>
<td align="left">Prim open reduct # neck femur & op fix - Massie nail plate</td>
</tr>
<tr>
<td align="left">7K1D017</td>
<td align="left">Prim open red # neck femur & op fix - McLaughlin nail plate</td>
</tr>
<tr>
<td align="left">7K1D018</td>
<td align="left">Prim open reduct # neck femur & op fix - Neufield nail plate</td>
</tr>
<tr>
<td align="left">7K1D019</td>
<td align="left">Prim open reduct # neck femur & op fix - Pugh nail plate</td>
</tr>
<tr>
<td align="left">7K1D01A</td>
<td align="left">Prim open reduct # neck femur & op fix - Richards screw</td>
</tr>
<tr>
<td align="left">7K1D01B</td>
<td align="left">Prim open reduct # neck femur & op fix - Ross Brown nail</td>
</tr>
<tr>
<td align="left">7K1D01D</td>
<td align="left">Prim op red # nck femur & op fix- Zickel intramed nail plate</td>
</tr>
<tr>
<td align="left">7K1D01E</td>
<td align="left">DHS - Dynamic hip screw primary fixation of neck of femur</td>
</tr>
<tr>
<td align="left">7K1D01F</td>
<td align="left">Dynamic hip screw primary fixation of neck of femur</td>
</tr>
<tr>
<td align="left">7K1D600</td>
<td align="left">Prmy open red+int fxn prox femoral #+screw/nail device alone</td>
</tr>
<tr>
<td align="left">7K1D700</td>
<td align="left">Prmy open red+int fxn prox fem #+screw/nail+intramed device</td>
</tr>
<tr>
<td align="left">7K1DE00</td>
<td align="left">Prim op red frac neck fem op fix us prox fem nail antirotatn</td>
</tr>
<tr>
<td align="left">7K1H500</td>
<td align="left">Revision to open red+ext fxtn of proximal femoral #</td>
</tr>
<tr>
<td align="left">7K1H600</td>
<td align="left">Revsn to opn red+int fxtn prox fem #+screw/nail device alone</td>
</tr>
<tr>
<td align="left">7K1H700</td>
<td align="left">Rvsn to opn red+int fxtn prox fem #+ scrw/nl+intramed device</td>
</tr>
<tr>
<td align="left">7K1H800</td>
<td align="left">Rvsn to opn red+int fxtn prox fem #+ scrw/nail+plate device</td>
</tr>
<tr>
<td align="left">7K1J000</td>
<td align="left">Cls red+int fxn proximal femoral #+screw/nail device alone</td>
</tr>
<tr>
<td align="left">7K1J011</td>
<td align="left">Cl red intracaps frac neck femur fix-Garden cannulated screw</td>
</tr>
<tr>
<td align="left">7K1J012</td>
<td align="left">Cl red intracaps fract neck femur fix - Smith-Petersen nail</td>
</tr>
<tr>
<td align="left">7K1J013</td>
<td align="left">Cls red+int fxn prox femoral #+Richard's cannulat hip screw</td>
</tr>
<tr>
<td align="left">7K1J500</td>
<td align="left">Primary int fxn(no red) prox fem #+screw/nail device alone</td>
</tr>
<tr>
<td align="left">7K1J600</td>
<td align="left">Primary int fxn(no red) prox fem #+scrw/nail+intramed device</td>
</tr>
<tr>
<td align="left">7K1J700</td>
<td align="left">Primary int fxn(no red) prox fem #+screw/nail+plate device</td>
</tr>
<tr>
<td align="left">7K1J800</td>
<td align="left">Revisn to int fxn(no red) prox fem #+screw/nail device alone</td>
</tr>
<tr>
<td align="left">7K1J900</td>
<td align="left">Rvsn to int fxn(no red) prox fem #+screw/nail+intramed dev</td>
</tr>
<tr>
<td align="left">7K1JA00</td>
<td align="left">Revisn to int fxn(no red) prox fem #+screw/nail+plate device</td>
</tr>
<tr>
<td align="left">7K1JB00</td>
<td align="left">Primary cls red+int fxn prox fem #+screw/nail device alone</td>
</tr>
<tr>
<td align="left">7K1JC00</td>
<td align="left">Prim cls rd+int fxn prox fem #+screw/nail+intramdulry device</td>
</tr>
<tr>
<td align="left">7K1Jd00</td>
<td align="left">Closed reduction of intracapsular # NOF internal fixat DHS</td>
</tr>
<tr>
<td align="left">7K1JD00</td>
<td align="left">Primary cls red+int fxn prox fem #+screw/nail+plate device</td>
</tr>
<tr>
<td align="left">7K1JE00</td>
<td align="left">Rvsn to cls red+int fxn prox fem #+screw/nail device alone</td>
</tr>
<tr>
<td align="left">7K1JF00</td>
<td align="left">Rvsn cls red+int fxn prox fem #+screw/nail+intramed device</td>
</tr>
<tr>
<td align="left">7K1JG00</td>
<td align="left">Rvsn to cls red+int fxn prox fem #+screw/nail+plate device</td>
</tr>
<tr>
<td align="left">7K1K300</td>
<td align="left">Primary external fixation(without reduction) prox femoral #</td>
</tr>
<tr>
<td align="left">7K1K400</td>
<td align="left">Revision to ext fxn(without reduction) proximal femoral #</td>
</tr>
<tr>
<td align="left">7K1K500</td>
<td align="left">Primary cls reduction+external fixation proximal femoral #</td>
</tr>
<tr>
<td align="left">7K1L400</td>
<td align="left">Closed reduction of fracture of hip</td>
</tr>
<tr>
<td align="left">7K1Y000</td>
<td align="left">Remanip intracap fract neck fem and fix using nail or screw</td>
</tr>
<tr>
<td align="left">7P20100</td>
<td align="left">Delivery of rehabilitation for hip fracture</td>
</tr>
<tr>
<td align="left">S300000</td>
<td align="left">Cls # prox femur, intracapsular section, unspecified</td>
</tr>
<tr>
<td align="left">S300100</td>
<td align="left">Closed fracture proximal femur, transepiphyseal</td>
</tr>
<tr>
<td align="left">S300200</td>
<td align="left">Closed fracture proximal femur, midcervical section</td>
</tr>
<tr>
<td align="left">S300300</td>
<td align="left">Closed fracture proximal femur, basicervical</td>
</tr>
<tr>
<td align="left">S300311</td>
<td align="left">Closed fracture, base of neck of femur</td>
</tr>
<tr>
<td align="left">S300400</td>
<td align="left">Closed fracture head of femur</td>
</tr>
<tr>
<td align="left">S300500</td>
<td align="left">Cls # prox femur, subcapital, Garden grade unspec.</td>
</tr>
<tr>
<td align="left">S300600</td>
<td align="left">Closed fracture proximal femur, subcapital, Garden grade I</td>
</tr>
<tr>
<td align="left">S300700</td>
<td align="left">Closed fracture proximal femur, subcapital, Garden grade II</td>
</tr>
<tr>
<td align="left">S300800</td>
<td align="left">Closed fracture proximal femur, subcapital, Garden grade III</td>
</tr>
<tr>
<td align="left">S300900</td>
<td align="left">Closed fracture proximal femur, subcapital, Garden grade IV</td>
</tr>
<tr>
<td align="left">S300A00</td>
<td align="left">Closed fracture of femur, upper epiphysis</td>
</tr>
<tr>
<td align="left">S300.00</td>
<td align="left">Closed fracture proximal femur, transcervical</td>
</tr>
<tr>
<td align="left">S300y00</td>
<td align="left">Closed fracture proximal femur, other transcervical</td>
</tr>
<tr>
<td align="left">S300y11</td>
<td align="left">Closed fracture of femur, subcapital</td>
</tr>
<tr>
<td align="left">S300z00</td>
<td align="left">Closed fracture proximal femur, transcervical, NOS</td>
</tr>
<tr>
<td align="left">S301000</td>
<td align="left">Opn # proximal femur, intracapsular section, unspecified</td>
</tr>
<tr>
<td align="left">S301100</td>
<td align="left">Open fracture proximal femur, transepiphyseal</td>
</tr>
<tr>
<td align="left">S301311</td>
<td align="left">Open fracture base of neck of femur</td>
</tr>
<tr>
<td align="left">S301400</td>
<td align="left">Open fracture head, femur</td>
</tr>
<tr>
<td align="left">S301500</td>
<td align="left">Open fracture proximal femur,subcapital, Garden grade unspec</td>
</tr>
<tr>
<td align="left">S301600</td>
<td align="left">Open fracture proximal femur,subcapital, Garden grade I</td>
</tr>
<tr>
<td align="left">S301700</td>
<td align="left">Open fracture proximal femur,subcapital, Garden grade II</td>
</tr>
<tr>
<td align="left">S301800</td>
<td align="left">Open fracture proximal femur,subcapital, Garden grade III</td>
</tr>
<tr>
<td align="left">S301900</td>
<td align="left">Open fracture proximal femur,subcapital, Garden grade IV</td>
</tr>
<tr>
<td align="left">S301A00</td>
<td align="left">Open fracture of femur, upper epiphysis</td>
</tr>
<tr>
<td align="left">S301.00</td>
<td align="left">Open fracture proximal femur, transcervical</td>
</tr>
<tr>
<td align="left">S301y00</td>
<td align="left">Open fracture proximal femur, other transcervical</td>
</tr>
<tr>
<td align="left">S301y11</td>
<td align="left">Open fracture of femur, subcapital</td>
</tr>
<tr>
<td align="left">S302000</td>
<td align="left">Cls # proximal femur, trochanteric section, unspecified</td>
</tr>
<tr>
<td align="left">S302011</td>
<td align="left">Closed fracture of femur, greater trochanter</td>
</tr>
<tr>
<td align="left">S302012</td>
<td align="left">Closed fracture of femur, lesser trochanter</td>
</tr>
<tr>
<td align="left">S302100</td>
<td align="left">Closed fracture proximal femur, intertrochanteric, two part</td>
</tr>
<tr>
<td align="left">S302200</td>
<td align="left">Closed fracture proximal femur, subtrochanteric</td>
</tr>
<tr>
<td align="left">S302300</td>
<td align="left">Cls # proximal femur, intertrochanteric, comminuted</td>
</tr>
<tr>
<td align="left">S302400</td>
<td align="left">Closed fracture of femur, intertrochanteric</td>
</tr>
<tr>
<td align="left">S302.00</td>
<td align="left">Closed fracture of proximal femur, pertrochanteric</td>
</tr>
<tr>
<td align="left">S302z00</td>
<td align="left">Cls # of proximal femur, pertrochanteric section, NOS</td>
</tr>
<tr>
<td align="left">S303000</td>
<td align="left">Open # of proximal femur, trochanteric section, unspecified</td>
</tr>
<tr>
<td align="left">S303011</td>
<td align="left">Open fracture of femur, greater trochanter</td>
</tr>
<tr>
<td align="left">S303100</td>
<td align="left">Open fracture proximal femur, intertrochanteric, two part</td>
</tr>
<tr>
<td align="left">S303200</td>
<td align="left">Open fracture proximal femur, subtrochanteric</td>
</tr>
<tr>
<td align="left">S303300</td>
<td align="left">Open fracture proximal femur, intertrochanteric, comminuted</td>
</tr>
<tr>
<td align="left">S303400</td>
<td align="left">Open fracture of femur, intertrochanteric</td>
</tr>
<tr>
<td align="left">S303.00</td>
<td align="left">Open fracture of proximal femur, pertrochanteric</td>
</tr>
<tr>
<td align="left">S303z00</td>
<td align="left">Open fracture of proximal femur, pertrochanteric, NOS</td>
</tr>
<tr>
<td align="left">S304.00</td>
<td align="left">Pertrochanteric fracture</td>
</tr>
<tr>
<td align="left">S305.00</td>
<td align="left">Subtrochanteric fracture</td>
</tr>
<tr>
<td align="left">S30..00</td>
<td align="left">Fracture of neck of femur</td>
</tr>
<tr>
<td align="left">S30..11</td>
<td align="left">Hip fracture</td>
</tr>
<tr>
<td align="left">S30w.00</td>
<td align="left">Closed fracture of unspecified proximal femur</td>
</tr>
<tr>
<td align="left">S30x.00</td>
<td align="left">Open fracture of unspecified proximal femur</td>
</tr>
<tr>
<td align="left">S30y.00</td>
<td align="left">Closed fracture of neck of femur NOS</td>
</tr>
<tr>
<td align="left">S30y.11</td>
<td align="left">Hip fracture NOS</td>
</tr>
<tr>
<td align="left">S30z.00</td>
<td align="left">Open fracture of neck of femur NOS</td>
</tr>
<tr>
<td align="left">S4E0.00</td>
<td align="left">Closed fracture-dislocation, hip joint</td>
</tr>
<tr>
<td align="left">S4E1.00</td>
<td align="left">Open fracture-dislocation, hip joint</td>
</tr>
<tr>
<td align="left">S4E2.00</td>
<td align="left">Closed fracture-subluxation, hip joint</td>
</tr>
<tr>
<td align="left">S4E..00</td>
<td align="left">Fracture-dislocation or subluxation hip</td>
</tr>
<tr>
<td align="left">SC03.00</td>
<td align="left">Late effect of fracture neck of femur</td>
</tr>
</tbody>
</table>
<h4>Secondary care diagnoses (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//secondary_care/ICD_fracture_hip.csv'>ICD_fracture_hip.csv</a>)</h4>
<table>
<thead>
<tr>
<th>ICD-10 code</th>
<th>ICD-10 Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left">S72.0</td>
<td align="left">Fracture of neck of femur</td>
</tr>
<tr>
<td align="left">S72.1</td>
<td align="left">Pertrochanteric fracture</td>
</tr>
<tr>
<td align="left">S72.2</td>
<td align="left">Subtrochanteric fracture</td>
</tr>
</tbody>
</table>
<h4>Secondary care procedures (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//secondary_care/OPCS_fracture_hip.csv'>OPCS_fracture_hip.csv</a>)</h4>
<table>
<thead>
<tr>
<th>OPCS-4 code</th>
<th>OPCS-4 Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left">W19.1</td>
<td align="left">Primary open reduction of fracture of neck of femur and open fixation using pin and plate</td>
</tr>
<tr>
<td align="left">W24.1</td>
<td align="left">Closed reduction of intracapsular fracture of neck of femur and fixation using nail or screw</td>
</tr>
<tr>
<td align="left">O17.1</td>
<td align="left">Remanipulation of intracapsular fracture of neck of femur and fixation using nail or screw</td>
</tr>
</tbody>
</table>
<h2>Fracture of wrist</h2>
<h4>Implementation</h4>
~~~
At the specified date, a patient is defined as having had Fracture of wrist IF they meet the criteria for any of the following on or before the specified date. The earliest date on which the individual meets any of the following criteria on or before the specified date is defined as the first event date:
Primary care
1. Fracture of wrist diagnosis or history of diagnosis or procedure during a consultation
OR
Secondary care (ICD10)
1. ALL diagnoses of Fracture of wrist or history of diagnosis during a hospitalization
~~~
<h4>Primary care (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//primary_care/CPRD_fracture_wrist.csv'>CPRD_fracture_wrist.csv</a>)</h4>
<table>
<thead>
<tr>
<th>Read code</th>
<th>Read Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left">7K1LM00</td>
<td align="left">Closed reduction of fracture of wrist</td>
</tr>
<tr>
<td align="left">S234000</td>
<td align="left">Closed fracture of forearm, lower end, unspecified</td>
</tr>
<tr>
<td align="left">S234100</td>
<td align="left">Closed Colles' fracture</td>
</tr>
<tr>
<td align="left">S234111</td>
<td align="left">Smith's fracture - closed</td>
</tr>
<tr>
<td align="left">S234200</td>
<td align="left">Closed fracture of the distal radius, unspecified</td>
</tr>
<tr>
<td align="left">S234300</td>
<td align="left">Closed fracture of ulna, styloid process</td>
</tr>
<tr>
<td align="left">S234400</td>
<td align="left">Closed fracture of ulna, lower epiphysis</td>
</tr>
<tr>
<td align="left">S234500</td>
<td align="left">Closed fracture distal ulna, unspecified</td>
</tr>
<tr>
<td align="left">S234600</td>
<td align="left">Closed fracture radius and ulna, distal</td>
</tr>
<tr>
<td align="left">S234700</td>
<td align="left">Closed Smith's fracture</td>
</tr>
<tr>
<td align="left">S234800</td>
<td align="left">Closed Galeazzi fracture</td>
</tr>
<tr>
<td align="left">S234900</td>
<td align="left">Closed volar Barton's fracture</td>
</tr>
<tr>
<td align="left">S234911</td>
<td align="left">Closed volar Barton's fracture-dislocation</td>
</tr>
<tr>
<td align="left">S234912</td>
<td align="left">Closed volar Barton fracture-subluxation</td>
</tr>
<tr>
<td align="left">S234A00</td>
<td align="left">Closd dorsal Barton's fracture</td>
</tr>
<tr>
<td align="left">S234A11</td>
<td align="left">Closed dorsal Barton's fracture-dislocation</td>
</tr>
<tr>
<td align="left">S234A12</td>
<td align="left">Closed dorsal Barton fracture-subluxation</td>
</tr>
<tr>
<td align="left">S234B00</td>
<td align="left">Closed fracture radial styloid</td>
</tr>
<tr>
<td align="left">S234C00</td>
<td align="left">Closed fracture distal radius, intra-articular, die-punch</td>
</tr>
<tr>
<td align="left">S234D00</td>
<td align="left">Closed fracture distal radius, extra-articular, other type</td>
</tr>
<tr>
<td align="left">S234E00</td>
<td align="left">Closed fracture distal radius, intra-articular, other type</td>
</tr>
<tr>
<td align="left">S234F00</td>
<td align="left">Closed Barton's fracture</td>
</tr>
<tr>
<td align="left">S234.00</td>
<td align="left">Closed fracture of radius and ulna, lower end</td>
</tr>
<tr>
<td align="left">S234.11</td>
<td align="left">Wrist fracture - closed</td>
</tr>
<tr>
<td align="left">S234z00</td>
<td align="left">Closed fracture of forearm, lower end, NOS</td>
</tr>
<tr>
<td align="left">S235000</td>
<td align="left">Open fracture of forearm, lower end, unspecified</td>
</tr>
<tr>
<td align="left">S235100</td>
<td align="left">Open Colles' fracture</td>
</tr>
<tr>
<td align="left">S235111</td>
<td align="left">Smith's fracture - open</td>
</tr>
<tr>
<td align="left">S235200</td>
<td align="left">Open fracture of the distal radius, unspecified</td>
</tr>
<tr>
<td align="left">S235300</td>
<td align="left">Open fracture of ulna, styloid process</td>
</tr>
<tr>
<td align="left">S235400</td>
<td align="left">Open fracture of ulna, lower epiphysis</td>
</tr>
<tr>
<td align="left">S235500</td>
<td align="left">Open fracture distal ulna - other</td>
</tr>
<tr>
<td align="left">S235600</td>
<td align="left">Open fracture radius and ulna, distal</td>
</tr>
<tr>
<td align="left">S235700</td>
<td align="left">Open Smith's fracture</td>
</tr>
<tr>
<td align="left">S235800</td>
<td align="left">Open Galeazzi fracture</td>
</tr>
<tr>
<td align="left">S235900</td>
<td align="left">Open volar Barton's fracture</td>
</tr>
<tr>
<td align="left">S235B00</td>
<td align="left">Open fracture radial styloid</td>
</tr>
<tr>
<td align="left">S235C00</td>
<td align="left">Open fracture distal radius, intra-articular, die-punch</td>
</tr>
<tr>
<td align="left">S235D00</td>
<td align="left">Open fracture distal radius, extra-articular other type</td>
</tr>
<tr>
<td align="left">S235E00</td>
<td align="left">Open fracture distal radius, intra-articular other type</td>
</tr>
<tr>
<td align="left">S235F00</td>
<td align="left">Open Barton's fracture</td>
</tr>
<tr>
<td align="left">S235.00</td>
<td align="left">Open fracture of radius and ulna, lower end</td>
</tr>
<tr>
<td align="left">S235.11</td>
<td align="left">Wrist fracture - open</td>
</tr>
<tr>
<td align="left">S235z00</td>
<td align="left">Open fracture of forearm, lower end, NOS</td>
</tr>
<tr>
<td align="left">S23B.00</td>
<td align="left">Fracture of lower end of radius</td>
</tr>
<tr>
<td align="left">S23C.00</td>
<td align="left">Fracture of lower end of both ulna and radius</td>
</tr>
<tr>
<td align="left">S4C0000</td>
<td align="left">Closed fracture-dislocation distal radio-ulnar joint</td>
</tr>
<tr>
<td align="left">S4C0100</td>
<td align="left">Closed fracture-dislocation radiocarpal joint</td>
</tr>
<tr>
<td align="left">S4C0.00</td>
<td align="left">Closed fracture dislocation of wrist</td>
</tr>
<tr>
<td align="left">S4C1000</td>
<td align="left">Open fracture-dislocation, distal radio-ulnar joint</td>
</tr>
<tr>
<td align="left">S4C1100</td>
<td align="left">Open fracture-dislocation radiocarpal joint</td>
</tr>
<tr>
<td align="left">S4C1.00</td>
<td align="left">Open fracture dislocation wrist</td>
</tr>
<tr>
<td align="left">S4C2000</td>
<td align="left">Closed fracture-subluxation, distal radio-ulnar jt</td>
</tr>
<tr>
<td align="left">S4C2100</td>
<td align="left">Closed fracture-subluxation radiocarpal joint</td>
</tr>
<tr>
<td align="left">S4C2.00</td>
<td align="left">Closed fracture-subluxation of the wrist</td>
</tr>
<tr>
<td align="left">S4C3000</td>
<td align="left">Open fracture-subluxation, distal radio-ulnar joint</td>
</tr>
<tr>
<td align="left">S4C3100</td>
<td align="left">Open fracture-subluxation radiocarpal joint</td>
</tr>
<tr>
<td align="left">S4C3.00</td>
<td align="left">Open fracture-subluxation of the wrist</td>
</tr>
<tr>
<td align="left">S4C..00</td>
<td align="left">Fracture-dislocation or subluxation of wrist</td>
</tr>
<tr>
<td align="left">SC3C000</td>
<td align="left">Sequelae of fracture at wrist and hand level</td>
</tr>
</tbody>
</table>
<h4>Secondary care diagnoses (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//secondary_care/ICD_fracture_wrist.csv'>ICD_fracture_wrist.csv</a>)</h4>
<table>
<thead>
<tr>
<th>ICD-10 code</th>
<th>ICD-10 Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left">S52.5</td>
<td align="left">Fracture of lower end of radius</td>
</tr>
<tr>
<td align="left">S52.6</td>
<td align="left">Fracture of lower end of both ulna and radius</td>
</tr>
</tbody>
</table>
<h2>Gastritis and duodenitis</h2>
<h4>Implementation</h4>
~~~
At the specified date, a patient is defined as having had 'Gastritis and duodenitis' and duodenitis IF they meet the criteria for any of the following on or before the specified date. The earliest date on which the individual meets any of the following criteria on or before the specified date is defined as the first event date:
Primary care
1. 'Gastritis and duodenitis' and duodenitis diagnosis or history of diagnosis or procedure during a consultation
OR
Secondary care
1. ALL diagnoses of 'Gastritis and duodenitis' and duodenitis or history of diagnosis during a hospitalization
~~~
<h4>Primary care (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//primary_care/CPRD_gastritis_duodenitis.csv'>CPRD_gastritis_duodenitis.csv</a>)</h4>
<table>
<thead>
<tr>
<th>Read code</th>
<th>Read Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left">A074313</td>
<td align="left">Helicobacter gastritis</td>
</tr>
<tr>
<td align="left">J11z.11</td>
<td align="left">Gastric erosions</td>
</tr>
<tr>
<td align="left">J123.00</td>
<td align="left">Duodenal erosion</td>
</tr>
<tr>
<td align="left">J150000</td>
<td align="left">Acute haemorrhagic gastritis</td>
</tr>
<tr>
<td align="left">J150.00</td>
<td align="left">Acute gastritis</td>
</tr>
<tr>
<td align="left">J151000</td>
<td align="left">Chronic atrophic gastritis</td>
</tr>
<tr>
<td align="left">J151100</td>
<td align="left">Chronic inflammatory gastritis</td>
</tr>
<tr>
<td align="left">J151200</td>
<td align="left">Chronic superficial gastritis</td>
</tr>
<tr>
<td align="left">J151.00</td>
<td align="left">Chronic gastritis</td>
</tr>
<tr>
<td align="left">J151z00</td>
<td align="left">Chronic gastritis NOS</td>
</tr>
<tr>
<td align="left">J152.00</td>
<td align="left">Gastric mucosal hypertrophy</td>
</tr>
<tr>
<td align="left">J153.00</td>
<td align="left">Alcoholic gastritis</td>
</tr>
<tr>
<td align="left">J154000</td>
<td align="left">Allergic gastritis</td>
</tr>
<tr>
<td align="left">J154100</td>
<td align="left">Bile induced gastritis</td>
</tr>
<tr>
<td align="left">J154200</td>
<td align="left">Irritant gastritis</td>
</tr>
<tr>
<td align="left">J154300</td>
<td align="left">Corrosive gastritis</td>
</tr>
<tr>
<td align="left">J154400</td>
<td align="left">Helicobacter gastritis</td>
</tr>
<tr>
<td align="left">J154.00</td>
<td align="left">Other specified gastritis</td>
</tr>
<tr>
<td align="left">J154z00</td>
<td align="left">Other specified gastritis NOS</td>
</tr>
<tr>
<td align="left">J155.00</td>
<td align="left">Gastritis unspecified</td>
</tr>
<tr>
<td align="left">J156.00</td>
<td align="left">Gastroduodenitis unspecified</td>
</tr>
<tr>
<td align="left">J157.00</td>
<td align="left">Duodenitis</td>
</tr>
<tr>
<td align="left">J15..00</td>
<td align="left">Gastritis and duodenitis</td>
</tr>
<tr>
<td align="left">J15z.00</td>
<td align="left">Gastritis and duodenitis NOS</td>
</tr>
<tr>
<td align="left">J4z0.00</td>
<td align="left">Non-infective gastritis NOS</td>
</tr>
<tr>
<td align="left">Jyu1200</td>
<td align="left">[X]Other acute gastritis</td>
</tr>
<tr>
<td align="left">Jyu1300</td>
<td align="left">[X]Other gastritis</td>
</tr>
<tr>
<td align="left">ZV65316</td>
<td align="left">[V]Dietary counselling in gastritis</td>
</tr>
</tbody>
</table>
<h4>Secondary care diagnoses (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//secondary_care/ICD_gastritis_duodenitis.csv'>ICD_gastritis_duodenitis.csv</a>)</h4>
<table>
<thead>
<tr>
<th>ICD-10 code</th>
<th>ICD-10 Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left">K29</td>
<td align="left">Gastritis and duodenitis</td>
</tr>
</tbody>
</table>
<h2>Gastro-oesophageal reflux disease</h2>
<h4>Implementation</h4>
~~~
At the specified date, a patient is defined as having had 'Gastro-oesophageal reflux disease' IF they meet the criteria for any of the following on or before the specified date. The earliest date on which the individual meets any of the following criteria on or before the specified date is defined as the first event date:
Primary care
1. 'Gastro-oesophageal reflux disease' diagnosis or history of diagnosis or procedure during a consultation
OR
Secondary care
1. ALL diagnoses of 'Gastro-oesophageal reflux disease' or history of diagnosis during a hospitalization
OR
Secondary care (OPCS4)
1. ALL procedures for 'Gastro-oesophageal reflux disease' during a hospitalization
~~~
<h4>Primary care (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//primary_care/CPRD_GORD.csv'>CPRD_GORD.csv</a>)</h4>
<table>
<thead>
<tr>
<th>Read code</th>
<th>Read Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left">171J.00</td>
<td align="left">Reflux cough</td>
</tr>
<tr>
<td align="left">1957.00</td>
<td align="left">Gastric reflux</td>
</tr>
<tr>
<td align="left">760L000</td>
<td align="left">Antireflux fundoplication using thoracic approach</td>
</tr>
<tr>
<td align="left">760L100</td>
<td align="left">Antireflux operation using thoracic approach NEC</td>
</tr>
<tr>
<td align="left">760L111</td>
<td align="left">Antireflux procedure using thoracic approach NEC</td>
</tr>
<tr>
<td align="left">760L200</td>
<td align="left">Antireflux fundoplication using abdominal approach</td>
</tr>
<tr>
<td align="left">760L300</td>
<td align="left">Antireflux gastropexy</td>
</tr>
<tr>
<td align="left">760L311</td>
<td align="left">Antireflux gastroplasty</td>
</tr>
<tr>
<td align="left">760L400</td>
<td align="left">Antireflux procedure and gastroplasty HFQ</td>
</tr>
<tr>
<td align="left">760L.00</td>
<td align="left">Antireflux operations</td>
</tr>
<tr>
<td align="left">760L.11</td>
<td align="left">Oesophageal reflux operations</td>
</tr>
<tr>
<td align="left">760Ly00</td>
<td align="left">Other specified antireflux operation</td>
</tr>
<tr>
<td align="left">760Lz00</td>
<td align="left">Antireflux operation NOS</td>
</tr>
<tr>
<td align="left">760M.00</td>
<td align="left">Revision of antireflux operations</td>
</tr>
<tr>
<td align="left">760Mz00</td>
<td align="left">Revision of antireflux operation NOS</td>
</tr>
<tr>
<td align="left">J101100</td>
<td align="left">Reflux oesophagitis</td>
</tr>
<tr>
<td align="left">J101111</td>
<td align="left">Acid reflux</td>
</tr>
<tr>
<td align="left">J101112</td>
<td align="left">Gastro-oesophageal reflux with oesophagitis</td>
</tr>
<tr>
<td align="left">J101113</td>
<td align="left">Oesophageal reflux with oesophagitis</td>
</tr>
<tr>
<td align="left">J10y400</td>
<td align="left">Oesopheal reflux without mention of oesophagitis</td>
</tr>
<tr>
<td align="left">J10y411</td>
<td align="left">Oesophageal reflux</td>
</tr>
<tr>
<td align="left">J10y412</td>
<td align="left">Gastro-oesophageal reflux</td>
</tr>
<tr>
<td align="left">J10y413</td>
<td align="left">Acid reflux</td>
</tr>
<tr>
<td align="left">J10y500</td>
<td align="left">Laryngopharyngeal reflux</td>
</tr>
</tbody>
</table>
<h4>Secondary care diagnoses (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//secondary_care/ICD_GORD.csv'>ICD_GORD.csv</a>)</h4>
<table>
<thead>
<tr>
<th>ICD-10 code</th>
<th>ICD-10 Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left">K21</td>
<td align="left">Gastro-oesophageal reflux disease</td>
</tr>
</tbody>
</table>
<h4>Secondary care procedures (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//secondary_care/OPCS_GORD.csv'>OPCS_GORD.csv</a>)</h4>
<table>
<thead>
<tr>
<th>OPCS-4 code</th>
<th>OPCS-4 Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left">G24</td>
<td align="left">Antireflux operations</td>
</tr>
<tr>
<td align="left">G24.1</td>
<td align="left">Antireflux fundoplication using thoracic approach</td>
</tr>
<tr>
<td align="left">G24.2</td>
<td align="left">Antireflux operation using thoracic approach NEC</td>
</tr>
<tr>
<td align="left">G24.3</td>
<td align="left">Antireflux fundoplication using abdominal approach</td>
</tr>
<tr>
<td align="left">G24.4</td>
<td align="left">Antireflux gastropexy</td>
</tr>
<tr>
<td align="left">G24.5</td>
<td align="left">Gastroplasty and antireflux procedure HFQ</td>
</tr>
<tr>
<td align="left">G24.6</td>
<td align="left">Insertion of Angelchick prosthesis</td>
</tr>
<tr>
<td align="left">G24.8</td>
<td align="left">Other specified antireflux operations</td>
</tr>
<tr>
<td align="left">G24.9</td>
<td align="left">Unspecified antireflux operations</td>
</tr>
<tr>
<td align="left">G25</td>
<td align="left">Revision of antireflux operations</td>
</tr>
<tr>
<td align="left">G25.1</td>
<td align="left">Revision of fundoplication of stomach</td>
</tr>
<tr>
<td align="left">G25.2</td>
<td align="left">Adjustment to Angelchick prosthesis</td>
</tr>
<tr>
<td align="left">G25.3</td>
<td align="left">Removal of Angelchick prosthesis</td>
</tr>
<tr>
<td align="left">G25.8</td>
<td align="left">Other specified revision of antireflux operations</td>
</tr>
<tr>
<td align="left">G25.9</td>
<td align="left">Unspecified revision of antireflux operations</td>
</tr>
</tbody>
</table>
<h2>Giant Cell arteritis</h2>
<h4>Implementation</h4>
~~~
At the specified date, a patient is defined as having had 'Giant Cell arteritis' IF they meet the criteria for any of the following on or before the specified date. The earliest date on which the individual meets any of the following criteria on or before the specified date is defined as the first event date:
Primary care
1. 'Giant Cell arteritis' diagnosis or history of diagnosis during a consultation
OR
Secondary care (ICD10)
1. ALL diagnoses of 'Giant Cell arteritis' or history of diagnosis during a hospitalization
~~~
<h4>Primary care (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//primary_care/CPRD_GCA.csv'>CPRD_GCA.csv</a>)</h4>
<table>
<thead>
<tr>
<th>Read code</th>
<th>Read Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left">G755000</td>
<td align="left">Cranial arteritis</td>
</tr>
<tr>
<td align="left">G755100</td>
<td align="left">Temporal arteritis</td>
</tr>
<tr>
<td align="left">G755200</td>
<td align="left">Horton's disease</td>
</tr>
<tr>
<td align="left">G755.00</td>
<td align="left">Giant cell arteritis</td>
</tr>
<tr>
<td align="left">G755z00</td>
<td align="left">Giant cell arteritis NOS</td>
</tr>
<tr>
<td align="left">N200.00</td>
<td align="left">Giant cell arteritis with polymyalgia rheumatica</td>
</tr>
<tr>
<td align="left">Nyu4100</td>
<td align="left">[X]Other giant cell arteritis</td>
</tr>
</tbody>
</table>
<h4>Secondary care diagnoses (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//secondary_care/ICD_GCA.csv'>ICD_GCA.csv</a>)</h4>
<table>
<thead>
<tr>
<th>ICD-10 code</th>
<th>ICD-10 Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left">M31.5</td>
<td align="left">Giant cell arteritis with polymyalgia rheumatica</td>
</tr>
<tr>
<td align="left">M31.6</td>
<td align="left">Other giant cell arteritis</td>
</tr>
</tbody>
</table>
<h2>Glaucoma</h2>
<h4>Implementation</h4>
~~~
At the specified date, a patient is defined as having had 'Glaucoma' IF they meet the criteria for any of the following on or before the specified date. The earliest date on which the individual meets any of the following criteria on or before the specified date is defined as the first event date:
Primary care
1. 'Glaucoma' diagnosis or history of diagnosis during a consultation
OR
Secondary care
1. ALL diagnoses of 'Glaucoma' or history of diagnosis during a hospitalization
OR
Secondary care (OPCS4)
1. ALL procedures for 'Glaucoma' during a hospitalization
~~~
<h4>Primary care (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//primary_care/CPRD_glaucoma.csv'>CPRD_glaucoma.csv</a>)</h4>
<table>
<thead>
<tr>
<th>Read code</th>
<th>Read Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="right">7259000</td>
<td align="left">Needling of bleb following glaucoma surgery</td>
</tr>
<tr>
<td align="right">7259100</td>
<td align="left">Injection of bleb following glaucoma surgery</td>
</tr>
<tr>
<td align="right">7259200</td>
<td align="left">Revision of bleb NEC following glaucoma surgery</td>
</tr>
<tr>
<td align="right">7259300</td>
<td align="left">Removal of releasable suture following glaucoma surgery</td>
</tr>
<tr>
<td align="right">7259400</td>
<td align="left">Laser suture lysis following glaucoma surgery</td>
</tr>
<tr>
<td align="right">7259</td>
<td align="left">Operations following glaucoma surgery</td>
</tr>
<tr>
<td align="left">7259y00</td>
<td align="left">Other specified operations following glaucoma surgery</td>
</tr>
<tr>
<td align="left">7259z00</td>
<td align="left">Operations following glaucoma surgery NOS</td>
</tr>
<tr>
<td align="right">7275</td>
<td align="left">Pan retinal photocoagulation for glaucoma</td>
</tr>
<tr>
<td align="left">F404211</td>
<td align="left">Glaucoma - absolute</td>
</tr>
<tr>
<td align="left">F450100</td>
<td align="left">Open angle glaucoma with borderline intraocular pressure</td>
</tr>
<tr>
<td align="left">F451000</td>
<td align="left">Unspecified open-angle glaucoma</td>
</tr>
<tr>
<td align="left">F451100</td>
<td align="left">Primary open-angle glaucoma</td>
</tr>
<tr>
<td align="left">F451111</td>
<td align="left">Simple chronic glaucoma</td>
</tr>
<tr>
<td align="left">F451200</td>
<td align="left">Low tension glaucoma</td>
</tr>
<tr>
<td align="left">F451211</td>
<td align="left">Normal pressure glaucoma</td>
</tr>
<tr>
<td align="left">F451500</td>
<td align="left">Open-angle glaucoma residual stage</td>
</tr>
<tr>
<td align="left">F451.00</td>
<td align="left">Open-angle glaucoma</td>
</tr>
<tr>
<td align="left">F451z00</td>
<td align="left">Open-angle glaucoma NOS</td>
</tr>
<tr>
<td align="left">F452000</td>
<td align="left">Unspecified primary angle-closure glaucoma</td>
</tr>
<tr>
<td align="left">F452100</td>
<td align="left">Intermittent primary angle-closure glaucoma</td>
</tr>
<tr>
<td align="left">F452200</td>
<td align="left">Acute primary angle-closure glaucoma</td>
</tr>
<tr>
<td align="left">F452300</td>
<td align="left">Chronic primary angle-closure glaucoma</td>
</tr>
<tr>
<td align="left">F452400</td>
<td align="left">Primary angle-closure glaucoma residual stage</td>
</tr>
<tr>
<td align="left">F452500</td>
<td align="left">Plateau iris</td>
</tr>
<tr>
<td align="left">F452.00</td>
<td align="left">Primary angle-closure glaucoma</td>
</tr>
<tr>
<td align="left">F452.11</td>
<td align="left">Closed angle glaucoma</td>
</tr>
<tr>
<td align="left">F452z00</td>
<td align="left">Primary angle-closure glaucoma NOS</td>
</tr>
<tr>
<td align="left">F45..00</td>
<td align="left">Glaucoma</td>
</tr>
<tr>
<td align="left">F45y200</td>
<td align="left">Low tension glaucoma</td>
</tr>
<tr>
<td align="left">F45y.00</td>
<td align="left">Other specified forms of glaucoma</td>
</tr>
<tr>
<td align="left">F45yz00</td>
<td align="left">Other specified glaucoma NOS</td>
</tr>
<tr>
<td align="left">F45z.00</td>
<td align="left">Glaucoma NOS</td>
</tr>
<tr>
<td align="left">F463100</td>
<td align="left">Glaucomatous subcapsular flecks</td>
</tr>
<tr>
<td align="left">F4H1400</td>
<td align="left">Optic disc glaucomatous atrophy</td>
</tr>
<tr>
<td align="left">FyuG.00</td>
<td align="left">[X]Glaucoma</td>
</tr>
</tbody>
</table>
<h4>Secondary care diagnoses (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//secondary_care/ICD_glaucoma.csv'>ICD_glaucoma.csv</a>)</h4>
<table>
<thead>
<tr>
<th>ICD-10 code</th>
<th>ICD-10 Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left">H40.1</td>
<td align="left">Primary open-angle glaucoma</td>
</tr>
<tr>
<td align="left">H40.2</td>
<td align="left">Primary angle-closure glaucoma</td>
</tr>
<tr>
<td align="left">H40.9</td>
<td align="left">Glaucoma, unspecified</td>
</tr>
</tbody>
</table>
<h4>Secondary care procedures (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//secondary_care/OPCS_glaucoma.csv'>OPCS_glaucoma.csv</a>)</h4>
<table>
<thead>
<tr>
<th>OPCS-4 code</th>
<th>OPCS-4 Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left">C60.1</td>
<td align="left">Trabeculectomy</td>
</tr>
<tr>
<td align="left">C60.2</td>
<td align="left">Inclusion of iris</td>
</tr>
<tr>
<td align="left">C60.3</td>
<td align="left">Fixation of iris</td>
</tr>
<tr>
<td align="left">C60.4</td>
<td align="left">Iridoplasty NEC</td>
</tr>
<tr>
<td align="left">C60.5</td>
<td align="left">Insertion of tube into anterior chamber of eye to assist drainage of aqueous humour</td>
</tr>
<tr>
<td align="left">C60.6</td>
<td align="left">Viscocanulostomy</td>
</tr>
<tr>
<td align="left">C60.8</td>
<td align="left">Other specified filtering operations on iris</td>
</tr>
<tr>
<td align="left">C60.9</td>
<td align="left">Unspecified filtering operations on iris</td>
</tr>
<tr>
<td align="left">C61.1</td>
<td align="left">Laser trabeculoplasty</td>
</tr>
<tr>
<td align="left">C61.2</td>
<td align="left">Trabeculotomy</td>
</tr>
<tr>
<td align="left">C61.3</td>
<td align="left">Goniotomy</td>
</tr>
<tr>
<td align="left">C61.4</td>
<td align="left">Goniopuncture</td>
</tr>
<tr>
<td align="left">C61.5</td>
<td align="left">Viscogonioplasty</td>
</tr>
<tr>
<td align="left">C61.8</td>
<td align="left">Other specified other operations on trabecular meshwork of eye</td>
</tr>
<tr>
<td align="left">C61.9</td>
<td align="left">Unspecified other operations on trabecular meshwork of eye</td>
</tr>
<tr>
<td align="left">C62.1</td>
<td align="left">Iridosclerotomy</td>
</tr>
<tr>
<td align="left">C62.2</td>
<td align="left">Surgical iridotomy</td>
</tr>
<tr>
<td align="left">C62.3</td>
<td align="left">Laser iridotomy</td>
</tr>
<tr>
<td align="left">C62.4</td>
<td align="left">Correction iridodialysis NEC</td>
</tr>
<tr>
<td align="left">C62.8</td>
<td align="left">Other specified incision of iris</td>
</tr>
<tr>
<td align="left">C62.9</td>
<td align="left">Unspecified incision of iris</td>
</tr>
</tbody>
</table>
<h2>Glomerulonephritis</h2>
<h4>Implementation</h4>
~~~
At the specified date, a patient is defined as having had 'Glomerulonephritis' IF they meet the criteria for any of the following on or before the specified date. The earliest date on which the individual meets any of the following criteria on or before the specified date is defined as the first event date:
Primary care
1. 'Glomerulonephritis' diagnosis or history of diagnosis during a consultation
OR
Secondary care (ICD10)
1. ALL diagnoses of 'Glomerulonephritis' or history of diagnosis during a hospitalization
~~~
<h4>Primary care (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//primary_care/CPRD_GN.csv'>CPRD_GN.csv</a>)</h4>
<table>
<thead>
<tr>
<th>Read code</th>
<th>Read Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left">D310100</td>
<td align="left">Henoch-Schonlein nephritis</td>
</tr>
<tr>
<td align="left">G752111</td>
<td align="left">Antiglomerular basement membrane disease</td>
</tr>
<tr>
<td align="left">G752112</td>
<td align="left">Anti GBM disease - Antiglomerular basement membrane disease</td>
</tr>
<tr>
<td align="left">K000100</td>
<td align="left">Crescentic glomerulonephritis</td>
</tr>
<tr>
<td align="left">K000111</td>
<td align="left">CGN - Crescentic glomerulonephritis</td>
</tr>
<tr>
<td align="left">K000.00</td>
<td align="left">Acute proliferative glomerulonephritis</td>
</tr>
<tr>
<td align="left">K001.00</td>
<td align="left">Acute nephritis with lesions of necrotising glomerulitis</td>
</tr>
<tr>
<td align="left">K00..00</td>
<td align="left">Acute glomerulonephritis</td>
</tr>
<tr>
<td align="left">K00..12</td>
<td align="left">Bright's disease</td>
</tr>
<tr>
<td align="left">K00y000</td>
<td align="left">Acute glomerulonephritis in diseases EC</td>
</tr>
<tr>
<td align="left">K00y.00</td>
<td align="left">Other acute glomerulonephritis</td>
</tr>
<tr>
<td align="left">K00yz00</td>
<td align="left">Other acute glomerulonephritis NOS</td>
</tr>
<tr>
<td align="left">K00z.00</td>
<td align="left">Acute glomerulonephritis NOS</td>
</tr>
<tr>
<td align="left">K010.00</td>
<td align="left">Nephrotic syndrome with proliferative glomerulonephritis</td>
</tr>
<tr>
<td align="left">K011.00</td>
<td align="left">Nephrotic syndrome with membranous glomerulonephritis</td>
</tr>
<tr>
<td align="left">K012.00</td>
<td align="left">Nephrotic syndrome+membranoproliferative glomerulonephritis</td>
</tr>
<tr>
<td align="left">K013.00</td>
<td align="left">Nephrotic syndrome with minimal change glomerulonephritis</td>
</tr>
<tr>
<td align="left">K013.11</td>
<td align="left">Lipoid nephrosis</td>
</tr>
<tr>
<td align="left">K013.12</td>
<td align="left">Steroid sensitive nephrotic syndrome</td>
</tr>
<tr>
<td align="left">K014.00</td>
<td align="left">Nephrotic syndrome, minor glomerular abnormality</td>
</tr>
<tr>
<td align="left">K015.00</td>
<td align="left">Nephrotic syndrome, focal and segmental glomerular lesions</td>
</tr>
<tr>
<td align="left">K016.00</td>
<td align="left">Nephrotic syndrome, diffuse membranous glomerulonephritis</td>
</tr>
<tr>
<td align="left">K017.00</td>
<td align="left">Nephrotic syn difus mesangial prolifertiv glomerulonephritis</td>
</tr>
<tr>
<td align="left">K018.00</td>
<td align="left">Nephrotic syn,difus endocapilary proliftv glomerulonephritis</td>
</tr>
<tr>
<td align="left">K019.00</td>
<td align="left">Nephrotic syn,diffuse mesangiocapillary glomerulonephritis</td>
</tr>
<tr>
<td align="left">K01A.00</td>
<td align="left">Nephrotic syndrome, dense deposit disease</td>
</tr>
<tr>
<td align="left">K01B.00</td>
<td align="left">Nephrotic syndrome, diffuse crescentic glomerulonephritis</td>
</tr>
<tr>
<td align="left">K01..00</td>
<td align="left">Nephrotic syndrome</td>
</tr>
<tr>
<td align="left">K01x000</td>
<td align="left">Nephrotic syndrome in amyloidosis</td>
</tr>
<tr>
<td align="left">K01x200</td>
<td align="left">Nephrotic syndrome in malaria</td>
</tr>
<tr>
<td align="left">K01x300</td>
<td align="left">Nephrotic syndrome in polyarteritis nodosa</td>
</tr>
<tr>
<td align="left">K01x400</td>
<td align="left">Nephrotic syndrome in systemic lupus erythematosus</td>
</tr>
<tr>
<td align="left">K01x411</td>
<td align="left">Lupus nephritis</td>
</tr>
<tr>
<td align="left">K01x.00</td>
<td align="left">Nephrotic syndrome in diseases EC</td>
</tr>
<tr>
<td align="left">K01y.00</td>
<td align="left">Nephrotic syndrome with other pathological kidney lesions</td>
</tr>
<tr>
<td align="left">K01z.00</td>
<td align="left">Nephrotic syndrome NOS</td>
</tr>
<tr>
<td align="left">K020.00</td>
<td align="left">Chronic proliferative glomerulonephritis</td>
</tr>
<tr>
<td align="left">K021.00</td>
<td align="left">Chronic membranous glomerulonephritis</td>
</tr>
<tr>
<td align="left">K022.00</td>
<td align="left">Chronic membranoproliferative glomerulonephritis</td>
</tr>
<tr>
<td align="left">K023.00</td>
<td align="left">Chronic rapidly progressive glomerulonephritis</td>
</tr>
<tr>
<td align="left">K02..00</td>
<td align="left">Chronic glomerulonephritis</td>
</tr>
<tr>
<td align="left">K02y000</td>
<td align="left">Chronic glomerulonephritis + diseases EC</td>
</tr>
<tr>
<td align="left">K02y200</td>
<td align="left">Chronic focal glomerulonephritis</td>
</tr>
<tr>
<td align="left">K02y300</td>
<td align="left">Chronic diffuse glomerulonephritis</td>
</tr>
<tr>
<td align="left">K02y.00</td>
<td align="left">Other chronic glomerulonephritis</td>
</tr>
<tr>
<td align="left">K02yz00</td>
<td align="left">Other chronic glomerulonephritis NOS</td>
</tr>
<tr>
<td align="left">K02z.00</td>
<td align="left">Chronic glomerulonephritis NOS</td>
</tr>
<tr>
<td align="left">K030.00</td>
<td align="left">Proliferative nephritis unspecified</td>
</tr>
<tr>
<td align="left">K031.00</td>
<td align="left">Membranous nephritis unspecified</td>
</tr>
<tr>
<td align="left">K032000</td>
<td align="left">Focal membranoproliferative glomerulonephritis</td>
</tr>
<tr>
<td align="left">K032100</td>
<td align="left">Recurrent benign haematuria syndrome</td>
</tr>
<tr>
<td align="left">K032200</td>
<td align="left">Focal glomerulon + focal recurr macroscop glomerulonephritis</td>
</tr>
<tr>
<td align="left">K032300</td>
<td align="left">Anaphylactoid glomerulonephritis</td>
</tr>
<tr>
<td align="left">K032600</td>
<td align="left">Berger's IgA or IgG nephropathy</td>
</tr>
<tr>
<td align="left">K032.00</td>
<td align="left">Membranoproliferative nephritis unspecified</td>
</tr>
<tr>
<td align="left">K032y00</td>
<td align="left">Nephritis unsp+OS membranoprolif glomerulonephritis lesion</td>
</tr>
<tr>
<td align="left">K032y11</td>
<td align="left">Hypocomplementaemic persistent glomerulonephritis NEC</td>
</tr>
<tr>
<td align="left">K032y13</td>
<td align="left">Mesangioproliferative glomerulonephritis NEC</td>
</tr>
<tr>
<td align="left">K032y14</td>
<td align="left">Mesangiocapillary glomerulonephritis NEC</td>
</tr>
<tr>
<td align="left">K032y15</td>
<td align="left">Mixed membranous and proliferative glomerulonephritis NEC</td>
</tr>
<tr>
<td align="left">K032z00</td>
<td align="left">Nephritis unsp+membranoprolif glomerulonephritis lesion NOS</td>
</tr>
<tr>
<td align="left">K033.00</td>
<td align="left">Rapidly progressive nephritis unspecified</td>
</tr>
<tr>
<td align="left">K03U.00</td>
<td align="left">Unspecif nephr synd, diff concentric glomerulonephritis</td>
</tr>
<tr>
<td align="left">K03V.00</td>
<td align="left">Unspecified nephritic syndrome, dense deposit disease</td>
</tr>
<tr>
<td align="left">K03W.00</td>
<td align="left">Unsp nephrit synd, diff endocap prolif glomerulonephritis</td>
</tr>
<tr>
<td align="left">K03X.00</td>
<td align="left">Unsp nephrit synd, diff mesang prolif glomerulonephritis</td>
</tr>
<tr>
<td align="left">K03z.00</td>
<td align="left">Unspecified glomerulonephritis NOS</td>
</tr>
<tr>
<td align="left">K072.00</td>
<td align="left">Glomerulosclerosis</td>
</tr>
<tr>
<td align="left">K0A0000</td>
<td align="left">Acute nephritic syndrome, minor glomerular abnormality</td>
</tr>
<tr>
<td align="left">K0A0100</td>
<td align="left">Acute nephritic syndrome, focal+segmental glomerular lesions</td>
</tr>
<tr>
<td align="left">K0A0200</td>
<td align="left">Acute nephritic syn, diffuse membranous glomerulonephritis</td>
</tr>
<tr>
<td align="left">K0A0300</td>
<td align="left">Acut neph syn, diffuse mesangial prolifrative glomnephritis</td>
</tr>
<tr>
<td align="left">K0A0400</td>
<td align="left">Ac neph syn difus endocaplry prolifrative glomerulonephritis</td>
</tr>
<tr>
<td align="left">K0A0500</td>
<td align="left">Acute neph syn, diffuse mesangiocapillary glomerulonephritis</td>
</tr>
<tr>
<td align="left">K0A0600</td>
<td align="left">Acute nephritic syndrome, dense deposit disease</td>
</tr>
<tr>
<td align="left">K0A0700</td>
<td align="left">Acute nephrotic syndrm diffuse crescentic glomerulonephritis</td>
</tr>
<tr>
<td align="left">K0A0.00</td>
<td align="left">Acute nephritic syndrome</td>
</tr>
<tr>
<td align="left">K0A1100</td>
<td align="left">Rapid progres nephritic syn focal+segmental glomerulr lesion</td>
</tr>
<tr>
<td align="left">K0A1200</td>
<td align="left">Rapid progres neph syn diffuse membranous glomerulonephritis</td>
</tr>
<tr>
<td align="left">K0A1300</td>
<td align="left">Rpd prog neph syn df mesangial prolifratv glomerulonephritis</td>
</tr>
<tr>
<td align="left">K0A1400</td>
<td align="left">Rapid progres neph syn df endocapilary prolifv glomnephritis</td>
</tr>
<tr>
<td align="left">K0A1600</td>
<td align="left">Rapid progressive nephritic syndrome, dense deposit disease</td>
</tr>
<tr>
<td align="left">K0A1700</td>
<td align="left">Rapid progres nephritic syn df crescentic glomerulonephritis</td>
</tr>
<tr>
<td align="left">K0A1.00</td>
<td align="left">Rapidly progressive nephritic syndrome</td>
</tr>
<tr>
<td align="left">K0A2000</td>
<td align="left">Recurrent+persistnt haematuria minor glomerular abnormality</td>
</tr>
<tr>
<td align="left">K0A2100</td>
<td align="left">Recur+persist haematuria, focal+segmental glomerular lesions</td>
</tr>
<tr>
<td align="left">K0A2200</td>
<td align="left">Recur+persist haematuria difus membranous glomerulonephritis</td>
</tr>
<tr>
<td align="left">K0A2300</td>
<td align="left">Recur+persist haemuria df mesangial prolif glomerulnephritis</td>
</tr>
<tr>
<td align="left">K0A2500</td>
<td align="left">Recur+persist hmuria df mesangiocapilary glomerulonephritis</td>
</tr>
<tr>
<td align="left">K0A2600</td>
<td align="left">Recurrent and persistent haematuria, dense deposit disease</td>
</tr>
<tr>
<td align="left">K0A2700</td>
<td align="left">Recur+persist haematuria difus crescentic glomerulonephritis</td>
</tr>
<tr>
<td align="left">K0A2800</td>
<td align="left">IgA nephropathy</td>
</tr>
<tr>
<td align="left">K0A2.00</td>
<td align="left">Recurrent and persistent haematuria</td>
</tr>
<tr>
<td align="left">K0A3000</td>
<td align="left">Chronic nephritic syndrome, minor glomerular abnormality</td>
</tr>
<tr>
<td align="left">K0A3100</td>
<td align="left">Chronic nephritic syndrm focal+segmental glomerular lesions</td>
</tr>
<tr>
<td align="left">K0A3200</td>
<td align="left">Chron nephritic syndrom difuse membranous glomerulonephritis</td>
</tr>
<tr>
<td align="left">K0A3300</td>
<td align="left">Chron neph syn difus mesangial prolifrtiv glomerulonephritis</td>
</tr>
<tr>
<td align="left">K0A3500</td>
<td align="left">Chronic neph syn difus mesangiocapillary glomerulonephritis</td>
</tr>
<tr>
<td align="left">K0A3600</td>
<td align="left">Chronic nephritic syndrome, dense deposit disease</td>
</tr>
<tr>
<td align="left">K0A3700</td>
<td align="left">Chronic nephritic syn diffuse crescentic glomerulonephritis</td>
</tr>
<tr>
<td align="left">K0A3.00</td>
<td align="left">Chronic nephritic syndrome</td>
</tr>
<tr>
<td align="left">K0A4100</td>
<td align="left">Isolatd proteinur/specifd morphlgcl les foc+seg glom lesn</td>
</tr>
<tr>
<td align="left">K0A4200</td>
<td align="left">Isolatd proteinur/specfd morphlgcl les df membrn glomneph</td>
</tr>
<tr>
<td align="left">K0A4300</td>
<td align="left">Isoltd prteinur/spcfd morph lesn df mesngl prolf glomneph</td>
</tr>
<tr>
<td align="left">K0A4500</td>
<td align="left">Isoltd prteinur+specfd morph les df mesangiocap glomnephr</td>
</tr>
<tr>
<td align="left">K0A4.00</td>
<td align="left">Isolated proteinuria with specified morphological lesion</td>
</tr>
<tr>
<td align="left">K0A4W00</td>
<td align="left">Isolated proteinuria, with unspecified morpholog changes</td>
</tr>
<tr>
<td align="left">K0A4X00</td>
<td align="left">Isolated proteinuria, with oth specif morpholog changes</td>
</tr>
<tr>
<td align="left">K0A7.00</td>
<td align="left">Glom disordr in blood diseas+disordr invlvg imun mechansm</td>
</tr>
<tr>
<td align="left">K0A8.00</td>
<td align="left">Rapidly progressive glomerulonephritis</td>
</tr>
<tr>
<td align="left">K0A..00</td>
<td align="left">Glomerular disease</td>
</tr>
<tr>
<td align="left">Kyu0900</td>
<td align="left">[X]Unsp nephrit synd, diff mesang prolif glomerulonephritis</td>
</tr>
</tbody>
</table>
<h4>Secondary care diagnoses (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//secondary_care/ICD_GN.csv'>ICD_GN.csv</a>)</h4>
<table>
<thead>
<tr>
<th>ICD-10 code</th>
<th>ICD-10 Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left">N00.0</td>
<td align="left">Acute nephritic syndrome - Minor glomerular abnormality</td>
</tr>
<tr>
<td align="left">N00.1</td>
<td align="left">Acute nephritic syndrome - Focal and segmental glomerular lesions</td>
</tr>
<tr>
<td align="left">N00.2</td>
<td align="left">Acute nephritic syndrome - Diffuse membranous glomerulonephritis</td>
</tr>
<tr>
<td align="left">N00.3</td>
<td align="left">Acute nephritic syndrome - Diffuse mesangial proliferative glomerulonephritis</td>
</tr>
<tr>
<td align="left">N00.4</td>
<td align="left">Acute nephritic syndrome - Diffuse endocapillary proliferative glomerulonephritis</td>
</tr>
<tr>
<td align="left">N00.5</td>
<td align="left">Acute nephritic syndrome - Diffuse mesangiocapillary glomerulonephritis</td>
</tr>
<tr>
<td align="left">N00.6</td>
<td align="left">Acute nephritic syndrome - Dense deposit disease</td>
</tr>
<tr>
<td align="left">N00.7</td>
<td align="left">Acute nephritic syndrome - Diffuse crescentic glomerulonephritis</td>
</tr>
<tr>
<td align="left">N00.8</td>
<td align="left">Acute nephritic syndrome - Other</td>
</tr>
<tr>
<td align="left">N00.9</td>
<td align="left">Acute nephritic syndrome - Unspecified</td>
</tr>
<tr>
<td align="left">N01.0</td>
<td align="left">Rapidly progressive nephritic syndrome - Minor glomerular abnormality</td>
</tr>
<tr>
<td align="left">N01.1</td>
<td align="left">Rapidly progressive nephritic syndrome - Focal and segmental glomerular lesions</td>
</tr>
<tr>
<td align="left">N01.2</td>
<td align="left">Rapidly progressive nephritic syndrome - Diffuse membranous glomerulonephritis</td>
</tr>
<tr>
<td align="left">N01.3</td>
<td align="left">Rapidly progressive nephritic syndrome - Diffuse mesangial proliferative glomerulonephritis</td>
</tr>
<tr>
<td align="left">N01.4</td>
<td align="left">Rapidly progressive nephritic syndrome - Diffuse endocapillary proliferative glomerulonephritis</td>
</tr>
<tr>
<td align="left">N01.5</td>
<td align="left">Rapidly progressive nephritic syndrome - Diffuse mesangiocapillary glomerulonephritis</td>
</tr>
<tr>
<td align="left">N01.7</td>
<td align="left">Rapidly progressive nephritic syndrome - Diffuse crescentic glomerulonephritis</td>
</tr>
<tr>
<td align="left">N01.8</td>
<td align="left">Rapidly progressive nephritic syndrome - Other</td>
</tr>
<tr>
<td align="left">N01.9</td>
<td align="left">Rapidly progressive nephritic syndrome - Unspecified</td>
</tr>
<tr>
<td align="left">N02.0</td>
<td align="left">Recurrent and persistent haematuria - Minor glomerular abnormality</td>
</tr>
<tr>
<td align="left">N02.1</td>
<td align="left">Recurrent and persistent haematuria - Focal and segmental glomerular lesions</td>
</tr>
<tr>
<td align="left">N02.2</td>
<td align="left">Recurrent and persistent haematuria - Diffuse membranous glomerulonephritis</td>
</tr>
<tr>
<td align="left">N02.3</td>
<td align="left">Recurrent and persistent haematuria - Diffuse mesangial proliferative glomerulonephritis</td>
</tr>
<tr>
<td align="left">N02.4</td>
<td align="left">Recurrent and persistent haematuria - Diffuse endocapillary proliferative glomerulonephritis</td>
</tr>
<tr>
<td align="left">N02.5</td>
<td align="left">Recurrent and persistent haematuria - Diffuse mesangiocapillary glomerulonephritis</td>
</tr>
<tr>
<td align="left">N02.6</td>
<td align="left">Recurrent and persistent haematuria - Dense deposit disease</td>
</tr>
<tr>
<td align="left">N02.7</td>
<td align="left">Recurrent and persistent haematuria - Diffuse crescentic glomerulonephritis</td>
</tr>
<tr>
<td align="left">N02.8</td>
<td align="left">Recurrent and persistent haematuria - Other</td>
</tr>
<tr>
<td align="left">N02.9</td>
<td align="left">Recurrent and persistent haematuria - Unspecified</td>
</tr>
<tr>
<td align="left">N03.0</td>
<td align="left">Chronic nephritic syndrome - Minor glomerular abnormality</td>
</tr>
<tr>
<td align="left">N03.1</td>
<td align="left">Chronic nephritic syndrome - Focal and segmental glomerular lesions</td>
</tr>
<tr>
<td align="left">N03.2</td>
<td align="left">Chronic nephritic syndrome - Diffuse membranous glomerulonephritis</td>
</tr>
<tr>
<td align="left">N03.3</td>
<td align="left">Chronic nephritic syndrome - Diffuse mesangial proliferative glomerulonephritis</td>
</tr>
<tr>
<td align="left">N03.4</td>
<td align="left">Chronic nephritic syndrome - Diffuse endocapillary proliferative glomerulonephritis</td>
</tr>
<tr>
<td align="left">N03.5</td>
<td align="left">Chronic nephritic syndrome - Diffuse mesangiocapillary glomerulonephritis</td>
</tr>
<tr>
<td align="left">N03.6</td>
<td align="left">Chronic nephritic syndrome - Dense deposit disease</td>
</tr>
<tr>
<td align="left">N03.7</td>
<td align="left">Chronic nephritic syndrome - Diffuse crescentic glomerulonephritis</td>
</tr>
<tr>
<td align="left">N03.8</td>
<td align="left">Chronic nephritic syndrome - Other</td>
</tr>
<tr>
<td align="left">N03.9</td>
<td align="left">Chronic nephritic syndrome - Unspecified</td>
</tr>
<tr>
<td align="left">N04.0</td>
<td align="left">Nephrotic syndrome - Minor glomerular abnormality</td>
</tr>
<tr>
<td align="left">N04.1</td>
<td align="left">Nephrotic syndrome - Focal and segmental glomerular lesions</td>
</tr>
<tr>
<td align="left">N04.2</td>
<td align="left">Nephrotic syndrome - Diffuse membranous glomerulonephritis</td>
</tr>
<tr>
<td align="left">N04.3</td>
<td align="left">Nephrotic syndrome - Diffuse mesangial proliferative glomerulonephritis</td>
</tr>
<tr>
<td align="left">N04.4</td>
<td align="left">Nephrotic syndrome - Diffuse endocapillary proliferative glomerulonephritis</td>
</tr>
<tr>
<td align="left">N04.5</td>
<td align="left">Nephrotic syndrome - Diffuse mesangiocapillary glomerulonephritis</td>
</tr>
<tr>
<td align="left">N04.6</td>
<td align="left">Nephrotic syndrome - Dense deposit disease</td>
</tr>
<tr>
<td align="left">N04.7</td>
<td align="left">Nephrotic syndrome - Diffuse crescentic glomerulonephritis</td>
</tr>
<tr>
<td align="left">N04.8</td>
<td align="left">Nephrotic syndrome - Other</td>
</tr>
<tr>
<td align="left">N04.9</td>
<td align="left">Nephrotic syndrome - Unspecified</td>
</tr>
<tr>
<td align="left">N05.0</td>
<td align="left">Unspecified nephritic syndrome - Minor glomerular abnormality</td>
</tr>
<tr>
<td align="left">N05.1</td>
<td align="left">Unspecified nephritic syndrome - Focal and segmental glomerular lesions</td>
</tr>
<tr>
<td align="left">N05.2</td>
<td align="left">Unspecified nephritic syndrome - Diffuse membranous glomerulonephritis</td>
</tr>
<tr>
<td align="left">N05.3</td>
<td align="left">Unspecified nephritic syndrome - Diffuse mesangial proliferative glomerulonephritis</td>
</tr>
<tr>
<td align="left">N05.4</td>
<td align="left">Unspecified nephritic syndrome - Diffuse endocapillary proliferative glomerulonephritis</td>
</tr>
<tr>
<td align="left">N05.5</td>
<td align="left">Unspecified nephritic syndrome - Diffuse mesangiocapillary glomerulonephritis</td>
</tr>
<tr>
<td align="left">N05.6</td>
<td align="left">Unspecified nephritic syndrome - Dense deposit disease</td>
</tr>
<tr>
<td align="left">N05.7</td>
<td align="left">Unspecified nephritic syndrome - Diffuse crescentic glomerulonephritis</td>
</tr>
<tr>
<td align="left">N05.8</td>
<td align="left">Unspecified nephritic syndrome - Other</td>
</tr>
<tr>
<td align="left">N05.9</td>
<td align="left">Unspecified nephritic syndrome - Unspecified</td>
</tr>
<tr>
<td align="left">N06.0</td>
<td align="left">Isolated proteinuria with specified morphological lesion - Minor glomerular abnormality</td>
</tr>
<tr>
<td align="left">N06.1</td>
<td align="left">Isolated proteinuria with specified morphological lesion - Focal and segmental glomerular lesions</td>
</tr>
<tr>
<td align="left">N06.2</td>
<td align="left">Isolated proteinuria with specified morphological lesion - Diffuse membranous glomerulonephritis</td>
</tr>
<tr>
<td align="left">N06.3</td>
<td align="left">Isolated proteinuria with specified morphological lesion - Diffuse mesangial proliferative glomerulonephritis</td>
</tr>
<tr>
<td align="left">N06.5</td>
<td align="left">Isolated proteinuria with specified morphological lesion - Diffuse mesangiocapillary glomerulonephritis</td>
</tr>
<tr>
<td align="left">N06.6</td>
<td align="left">Isolated proteinuria with specified morphological lesion - Dense deposit disease</td>
</tr>
<tr>
<td align="left">N06.8</td>
<td align="left">Isolated proteinuria with specified morphological lesion - Other</td>
</tr>
<tr>
<td align="left">N06.9</td>
<td align="left">Isolated proteinuria with specified morphological lesion - Unspecified</td>
</tr>
</tbody>
</table>
<h2>Gout</h2>
<h4>Implementation</h4>
~~~
At the specified date, a patient is defined as having had 'Gout' IF they meet the criteria for any of the following on or before the specified date. The earliest date on which the individual meets any of the following criteria on or before the specified date is defined as the first event date:
Primary care
1. 'Gout' diagnosis or history of diagnosis during a consultation
OR
Secondary care (ICD10)
1. ALL diagnoses of 'Gout' or history of diagnosis during a hospitalization
~~~
<h4>Primary care (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//primary_care/CPRD_gout.csv'>CPRD_gout.csv</a>)</h4>
<table>
<thead>
<tr>
<th>Read code</th>
<th>Read Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="right">1443</td>
<td align="left">H/O: gout</td>
</tr>
<tr>
<td align="left">2D52.00</td>
<td align="left">O/E - auricle of ear - tophi</td>
</tr>
<tr>
<td align="right">6691</td>
<td align="left">Initial gout assessment</td>
</tr>
<tr>
<td align="right">6692</td>
<td align="left">Follow-up gout assessment</td>
</tr>
<tr>
<td align="right">6693</td>
<td align="left">Joints gout affected</td>
</tr>
<tr>
<td align="right">6695</td>
<td align="left">Date gout treatment started</td>
</tr>
<tr>
<td align="right">6696</td>
<td align="left">Date of last gout attack</td>
</tr>
<tr>
<td align="left">669..00</td>
<td align="left">Gout monitoring</td>
</tr>
<tr>
<td align="right">6697</td>
<td align="left">Gout associated problems</td>
</tr>
<tr>
<td align="left">669Z.00</td>
<td align="left">Gout monitoring NOS</td>
</tr>
<tr>
<td align="left">C340.00</td>
<td align="left">Gouty arthropathy</td>
</tr>
<tr>
<td align="left">C341.00</td>
<td align="left">Gouty nephropathy</td>
</tr>
<tr>
<td align="left">C341z00</td>
<td align="left">Gouty nephropathy NOS</td>
</tr>
<tr>
<td align="left">C342.00</td>
<td align="left">Idiopathic gout</td>
</tr>
<tr>
<td align="left">C344.00</td>
<td align="left">Drug-induced gout</td>
</tr>
<tr>
<td align="left">C345.00</td>
<td align="left">Gout due to impairment of renal function</td>
</tr>
<tr>
<td align="left">C34..00</td>
<td align="left">Gout</td>
</tr>
<tr>
<td align="left">C34y000</td>
<td align="left">Gouty tophi of ear</td>
</tr>
<tr>
<td align="left">C34y100</td>
<td align="left">Gouty tophi of heart</td>
</tr>
<tr>
<td align="left">C34y200</td>
<td align="left">Gouty tophi of other sites</td>
</tr>
<tr>
<td align="left">C34y300</td>
<td align="left">Gouty iritis</td>
</tr>
<tr>
<td align="left">C34y400</td>
<td align="left">Gouty neuritis</td>
</tr>
<tr>
<td align="left">C34y500</td>
<td align="left">Gouty tophi of hand</td>
</tr>
<tr>
<td align="left">C34y.00</td>
<td align="left">Other specified gouty manifestation</td>
</tr>
<tr>
<td align="left">C34yz00</td>
<td align="left">Other specified gouty manifestation NOS</td>
</tr>
<tr>
<td align="left">C34z.00</td>
<td align="left">Gout NOS</td>
</tr>
<tr>
<td align="left">G557300</td>
<td align="left">Gouty tophi of heart</td>
</tr>
<tr>
<td align="left">N023100</td>
<td align="left">Gouty arthritis of the shoulder region</td>
</tr>
<tr>
<td align="left">N023200</td>
<td align="left">Gouty arthritis of the upper arm</td>
</tr>
<tr>
<td align="left">N023300</td>
<td align="left">Gouty arthritis of the forearm</td>
</tr>
<tr>
<td align="left">N023400</td>
<td align="left">Gouty arthritis of the hand</td>
</tr>
<tr>
<td align="left">N023600</td>
<td align="left">Gouty arthritis of the lower leg</td>
</tr>
<tr>
<td align="left">N023700</td>
<td align="left">Gouty arthritis of the ankle and foot</td>
</tr>
<tr>
<td align="left">N023800</td>
<td align="left">Gouty arthritis of toe</td>
</tr>
<tr>
<td align="left">N023.00</td>
<td align="left">Gouty arthritis</td>
</tr>
<tr>
<td align="left">N023x00</td>
<td align="left">Gouty arthritis of multiple sites</td>
</tr>
<tr>
<td align="left">N023y00</td>
<td align="left">Gouty arthritis of other specified site</td>
</tr>
<tr>
<td align="left">N023z00</td>
<td align="left">Gouty arthritis NOS</td>
</tr>
<tr>
<td align="left">Nyu1700</td>
<td align="left">[X]Other secondary gout</td>
</tr>
</tbody>
</table>
<h4>Secondary care diagnoses (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//secondary_care/ICD_gout.csv'>ICD_gout.csv</a>)</h4>
<table>
<thead>
<tr>
<th>ICD-10 code</th>
<th>ICD-10 Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left">M10</td>
<td align="left">Gout</td>
</tr>
<tr>
<td align="left">M14.0</td>
<td align="left">Gouty arthropathy due to enzyme defects and other inherited disorders</td>
</tr>
</tbody>
</table>
<h2>HIV</h2>
<h4>Implementation</h4>
~~~
At the specified date, a patient is defined as having had 'HIV' IF they meet the criteria for any of the following on or before the specified date. The earliest date on which the individual meets any of the following criteria on or before the specified date is defined as the first event date:
Primary care
1. 'HIV' diagnosis or history of diagnosis during a consultation
OR
Secondary care
1. ALL diagnoses of 'HIV' or history of diagnosis during a hospitalization
~~~
<h4>Primary care (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//primary_care/CPRD_hiv.csv'>CPRD_hiv.csv</a>)</h4>
<table>
<thead>
<tr>
<th>Read code</th>
<th>Read Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left">43C3.11</td>
<td align="left">HIV positive</td>
</tr>
<tr>
<td align="left">4J34.00</td>
<td align="left">HIV viral load</td>
</tr>
<tr>
<td align="left">4J3F.00</td>
<td align="left">Human immunodeficiency virus viral load by log rank</td>
</tr>
<tr>
<td align="left">65QA.00</td>
<td align="left">AIDS carrier</td>
</tr>
<tr>
<td align="left">65VE.00</td>
<td align="left">Notification of AIDS</td>
</tr>
<tr>
<td align="left">66j0.00</td>
<td align="left">Human immunodeficiency virus annual review</td>
</tr>
<tr>
<td align="left">66j..00</td>
<td align="left">Human immunodeficiency virus monitoring</td>
</tr>
<tr>
<td align="left">9kl..00</td>
<td align="left">HIV pos gen health check serv declind - enhanc service admin</td>
</tr>
<tr>
<td align="left">A788000</td>
<td align="left">Acute human immunodeficiency virus infection</td>
</tr>
<tr>
<td align="left">A788100</td>
<td align="left">Asymptomatic human immunodeficiency virus infection</td>
</tr>
<tr>
<td align="left">A788200</td>
<td align="left">HIV infection with persistent generalised lymphadenopathy</td>
</tr>
<tr>
<td align="left">A788300</td>
<td align="left">Human immunodeficiency virus with constitutional disease</td>
</tr>
<tr>
<td align="left">A788400</td>
<td align="left">Human immunodeficiency virus with neurological disease</td>
</tr>
<tr>
<td align="left">A788500</td>
<td align="left">Human immunodeficiency virus with secondary infection</td>
</tr>
<tr>
<td align="left">A788600</td>
<td align="left">Human immunodeficiency virus with secondary cancers</td>
</tr>
<tr>
<td align="left">A788.00</td>
<td align="left">Acquired immune deficiency syndrome</td>
</tr>
<tr>
<td align="left">A788.11</td>
<td align="left">Human immunodeficiency virus infection</td>
</tr>
<tr>
<td align="left">A788U00</td>
<td align="left">HIV disease result/haematological+immunologic abnorms,NEC</td>
</tr>
<tr>
<td align="left">A788W00</td>
<td align="left">HIV disease resulting in unspecified malignant neoplasm</td>
</tr>
<tr>
<td align="left">A788X00</td>
<td align="left">HIV disease resulting/unspcf infectious+parasitic disease</td>
</tr>
<tr>
<td align="left">A788y00</td>
<td align="left">Human immunodeficiency virus with other clinical findings</td>
</tr>
<tr>
<td align="left">A788z00</td>
<td align="left">Acquired human immunodeficiency virus infection syndrome NOS</td>
</tr>
<tr>
<td align="left">A789000</td>
<td align="left">HIV disease resulting in mycobacterial infection</td>
</tr>
<tr>
<td align="left">A789100</td>
<td align="left">HIV disease resulting in cytomegaloviral disease</td>
</tr>
<tr>
<td align="left">A789200</td>
<td align="left">HIV disease resulting in candidiasis</td>
</tr>
<tr>
<td align="left">A789300</td>
<td align="left">HIV disease resulting in Pneumocystis carinii pneumonia</td>
</tr>
<tr>
<td align="left">A789311</td>
<td align="left">HIV disease resulting in Pneumocystis jirovecii pneumonia</td>
</tr>
<tr>
<td align="left">A789400</td>
<td align="left">HIV disease resulting in multiple infections</td>
</tr>
<tr>
<td align="left">A789500</td>
<td align="left">HIV disease resulting in Kaposi's sarcoma</td>
</tr>
<tr>
<td align="left">A789511</td>
<td align="left">HIV disease resulting in Kaposi sarcoma</td>
</tr>
<tr>
<td align="left">A789600</td>
<td align="left">HIV disease resulting in Burkitt's lymphoma</td>
</tr>
<tr>
<td align="left">A789700</td>
<td align="left">HIV dis resulting oth types of non-Hodgkin's lymphoma</td>
</tr>
<tr>
<td align="left">A789800</td>
<td align="left">HIV disease resulting in multiple malignant neoplasms</td>
</tr>
<tr>
<td align="left">A789900</td>
<td align="left">HIV disease resulting in lymphoid interstitial pneumonitis</td>
</tr>
<tr>
<td align="left">A789.00</td>
<td align="left">Human immunodef virus resulting in other disease</td>
</tr>
<tr>
<td align="left">A789A00</td>
<td align="left">HIV disease resulting in wasting syndrome</td>
</tr>
<tr>
<td align="left">A789X00</td>
<td align="left">HIV dis reslt/oth mal neopl/lymph,h'matopoetc+reltd tissu</td>
</tr>
<tr>
<td align="left">AyuC100</td>
<td align="left">[X]HIV disease resulting in other viral infections</td>
</tr>
<tr>
<td align="left">AyuC300</td>
<td align="left">[X]HIV disease resulting in multiple infections</td>
</tr>
<tr>
<td align="left">AyuC400</td>
<td align="left">[X]HIV disease resulting/other infectious+parasitic diseases</td>
</tr>
<tr>
<td align="left">AyuC600</td>
<td align="left">[X]HIV disease resulting in other non-Hodgkin's lymphoma</td>
</tr>
<tr>
<td align="left">AyuC.00</td>
<td align="left">[X]Human immunodeficiency virus disease</td>
</tr>
<tr>
<td align="left">AyuCB00</td>
<td align="left">[X]HIV disease result/haematological+immunologic abnorms,NEC</td>
</tr>
<tr>
<td align="left">AyuCC00</td>
<td align="left">[X]HIV disease resulting in other specified conditions</td>
</tr>
<tr>
<td align="left">AyuCD00</td>
<td align="left">[X]Unspecified human immunodeficiency virus [HIV] disease</td>
</tr>
<tr>
<td align="left">Eu02400</td>
<td align="left">[X]Dementia in human immunodef virus [HIV] disease</td>
</tr>
<tr>
<td align="left">R109.00</td>
<td align="left">[D]Laboratory evidence of human immunodeficiency virus [HIV]</td>
</tr>
<tr>
<td align="left">ZV01A00</td>
<td align="left">[V]Asymptomatic human immunodeficency virus infection status</td>
</tr>
</tbody>
</table>
<h4>Secondary care diagnoses (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//secondary_care/ICD_hiv.csv'>ICD_hiv.csv</a>)</h4>
<table>
<thead>
<tr>
<th>ICD-10 code</th>
<th>ICD-10 Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left">B20</td>
<td align="left">Human immunodeficiency virus [HIV] disease resulting in infectious and parasitic diseases</td>
</tr>
<tr>
<td align="left">B21</td>
<td align="left">Human immunodeficiency virus [HIV] disease resulting in malignant neoplasms</td>
</tr>
<tr>
<td align="left">B22</td>
<td align="left">Human immunodeficiency virus [HIV] disease resulting in other specified diseases</td>
</tr>
<tr>
<td align="left">B23</td>
<td align="left">Human immunodeficiency virus [HIV] disease resulting in other conditions</td>
</tr>
<tr>
<td align="left">B24</td>
<td align="left">Unspecified human immunodeficiency virus [HIV] disease</td>
</tr>
<tr>
<td align="left">F02.4</td>
<td align="left">Dementia in human immunodeficiency virus [HIV] disease</td>
</tr>
<tr>
<td align="left">R75</td>
<td align="left">Laboratory evidence of human immunodeficiency virus [HIV]</td>
</tr>
<tr>
<td align="left">Z21</td>
<td align="left">Asymptomatic human immunodeficiency virus [HIV] infection status</td>
</tr>
</tbody>
</table>
<h2>Haemangioma, any site</h2>
<h4>Implementation</h4>
~~~
At the specified date, a patient is defined as having had 'Haemangioma, any site' IF they meet the criteria for any of the following on or before the specified date. The earliest date on which the individual meets any of the following criteria on or before the specified date is defined as the first event date:
Primary care
1. 'Haemangioma, any site' diagnosis or history of diagnosis during a consultation
OR
Secondary care
1. ALL diagnoses of 'Haemangioma, any site' or history of diagnosis during a hospitalization
~~~
<h4>Primary care (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//primary_care/CPRD_haemangioma.csv'>CPRD_haemangioma.csv</a>)</h4>
<table>
<thead>
<tr>
<th>Read code</th>
<th>Read Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left">2F25.00</td>
<td align="left">O/E - capilliary naevi present</td>
</tr>
<tr>
<td align="left">7A6G600</td>
<td align="left">Excision of haemangioma</td>
</tr>
<tr>
<td align="left">B7J0000</td>
<td align="left">Haemangioma of unspecified site</td>
</tr>
<tr>
<td align="left">B7J0100</td>
<td align="left">Haemangioma of skin and subcutaneous tissue</td>
</tr>
<tr>
<td align="left">B7J0111</td>
<td align="left">Skin haemangioma</td>
</tr>
<tr>
<td align="left">B7J0112</td>
<td align="left">Subcutaneous haemangioma</td>
</tr>
<tr>
<td align="left">B7J0200</td>
<td align="left">Haemangioma of intracranial structures</td>
</tr>
<tr>
<td align="left">B7J0300</td>
<td align="left">Haemangioma of retina</td>
</tr>
<tr>
<td align="left">B7J0400</td>
<td align="left">Haemangioma of intra-abdominal structures</td>
</tr>
<tr>
<td align="left">B7J0.00</td>
<td align="left">Haemangioma</td>
</tr>
<tr>
<td align="left">B7J0.11</td>
<td align="left">Glomus tumour</td>
</tr>
<tr>
<td align="left">B7J0z00</td>
<td align="left">Haemangioma NOS</td>
</tr>
<tr>
<td align="left">B7J..00</td>
<td align="left">Haemangiomas and lymphangiomas of any site</td>
</tr>
<tr>
<td align="left">B7Jz.00</td>
<td align="left">Haemangioma or lymphangioma NOS</td>
</tr>
<tr>
<td align="left">BBd7.00</td>
<td align="left">[M]Haemangioblastic meningioma</td>
</tr>
<tr>
<td align="left">BBd8.00</td>
<td align="left">[M]Haemangiopericytic meningioma</td>
</tr>
<tr>
<td align="left">BBDC.00</td>
<td align="left">[M]Glomus tumour</td>
</tr>
<tr>
<td align="left">BBGK.13</td>
<td align="left">[M]Sclerosing haemangioma</td>
</tr>
<tr>
<td align="left">BBT0.00</td>
<td align="left">[M]Haemangioma NOS</td>
</tr>
<tr>
<td align="left">BBT2.00</td>
<td align="left">[M]Cavernous haemangioma</td>
</tr>
<tr>
<td align="left">BBT3.00</td>
<td align="left">[M]Venous haemangioma</td>
</tr>
<tr>
<td align="left">BBT4.00</td>
<td align="left">[M]Racemose haemangioma</td>
</tr>
<tr>
<td align="left">BBT4.11</td>
<td align="left">[M]Arteriovenous haemangioma</td>
</tr>
<tr>
<td align="left">BBT7000</td>
<td align="left">[M]Haemangioendothelioma, benign</td>
</tr>
<tr>
<td align="left">BBT8.00</td>
<td align="left">[M]Capillary haemangioma</td>
</tr>
<tr>
<td align="left">BBT8.11</td>
<td align="left">[M]Haemangioma simplex</td>
</tr>
<tr>
<td align="left">BBT8.12</td>
<td align="left">[M]Infantile haemangioma</td>
</tr>
<tr>
<td align="left">BBT8.13</td>
<td align="left">[M]Juvenile haemangioma</td>
</tr>
<tr>
<td align="left">BBT8.14</td>
<td align="left">[M]Plexiform haemangioma</td>
</tr>
<tr>
<td align="left">BBT9.00</td>
<td align="left">[M]Intramuscular haemangioma</td>
</tr>
<tr>
<td align="left">BBT..11</td>
<td align="left">[M]Haemangiomatous tumours</td>
</tr>
<tr>
<td align="left">BBTC.00</td>
<td align="left">[M]Verrucous keratotic haemangioma</td>
</tr>
<tr>
<td align="left">BBTD000</td>
<td align="left">[M]Haemangiopericytoma, benign</td>
</tr>
<tr>
<td align="left">BBTF.00</td>
<td align="left">[M]Haemangioblastoma</td>
</tr>
<tr>
<td align="left">BBTG.00</td>
<td align="left">[M]Epithelioid haemangioma</td>
</tr>
<tr>
<td align="left">BBTH.00</td>
<td align="left">[M]Histiocytoid haemangioma</td>
</tr>
<tr>
<td align="left">G771200</td>
<td align="left">Campbell de Morgan's spots</td>
</tr>
<tr>
<td align="left">PG42000</td>
<td align="left">Multiple enchondromata with haemangioma</td>
</tr>
<tr>
<td align="left">PG42011</td>
<td align="left">Kast's syndrome</td>
</tr>
<tr>
<td align="left">PG42012</td>
<td align="left">Maffuci's syndrome</td>
</tr>
<tr>
<td align="left">PH31200</td>
<td align="left">Strawberry naevus</td>
</tr>
</tbody>
</table>
<h4>Secondary care diagnoses (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//secondary_care/ICD_haemangioma.csv'>ICD_haemangioma.csv</a>)</h4>
<table>
<thead>
<tr>
<th>ICD-10 code</th>
<th>ICD-10 Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left">D18.0</td>
<td align="left">Haemangioma, any site</td>
</tr>
</tbody>
</table>
<h2>Hearing loss</h2>
<h4>Implementation</h4>
~~~
At the specified date, a patient is defined as having had Hearing loss IF they meet the criteria for any of the following on or before the specified date. The earliest date on which the individual meets any of the following criteria on or before the specified date is defined as the first event date:
Primary care
1. Hearing loss diagnosis or history of diagnosis or procedure during a consultation
OR
Secondary care (ICD10)
1. ALL diagnoses of Hearing loss or history of diagnosis during a hospitalization
~~~
<h4>Primary care (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//primary_care/CPRD_deaf.csv'>CPRD_deaf.csv</a>)</h4>
<table>
<thead>
<tr>
<th>Read code</th>
<th>Read Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="right">1493</td>
<td align="left">H/O: hearing problem</td>
</tr>
<tr>
<td align="left">1C13100</td>
<td align="left">Unilateral deafness</td>
</tr>
<tr>
<td align="left">1C13.00</td>
<td align="left">Deafness</td>
</tr>
<tr>
<td align="left">1C13.11</td>
<td align="left">Deafness symptom</td>
</tr>
<tr>
<td align="left">1C13200</td>
<td align="left">Partial deafness</td>
</tr>
<tr>
<td align="left">1C13300</td>
<td align="left">Bilateral deafness</td>
</tr>
<tr>
<td align="left">1C17.00</td>
<td align="left">Hearing aid problem</td>
</tr>
<tr>
<td align="left">2BL..11</td>
<td align="left">O/E - deaf</td>
</tr>
<tr>
<td align="left">2BL3.00</td>
<td align="left">O/E - significantly deaf</td>
</tr>
<tr>
<td align="left">2BL4.00</td>
<td align="left">O/E - very deaf</td>
</tr>
<tr>
<td align="left">2BL5.00</td>
<td align="left">O/E - completely deaf</td>
</tr>
<tr>
<td align="left">2BM2.11</td>
<td align="left">O/E - conductive deafness</td>
</tr>
<tr>
<td align="left">2BM3.11</td>
<td align="left">O/E - perceptive deafness</td>
</tr>
<tr>
<td align="left">2DG..00</td>
<td align="left">Hearing aid worn</td>
</tr>
<tr>
<td align="left">2DH0.00</td>
<td align="left">Uses hearing loop</td>
</tr>
<tr>
<td align="left">7308400.0</td>
<td align="left">Placement of hearing implant in external ear</td>
</tr>
<tr>
<td align="left">7308500.0</td>
<td align="left">Attention to hearing implant in external ear</td>
</tr>
<tr>
<td align="left">7308600.0</td>
<td align="left">Removal of hearing implant from external ear</td>
</tr>
<tr>
<td align="left">7311A00</td>
<td align="left">Insertn bone anchors subcutaneous bone anchored hearing aid</td>
</tr>
<tr>
<td align="left">7317C00</td>
<td align="left">Placement of hearing implant in middle ear</td>
</tr>
<tr>
<td align="left">7317D00</td>
<td align="left">Attention to hearing implant in middle ear</td>
</tr>
<tr>
<td align="left">7317.00</td>
<td align="left">Removal of hearing implant from middle ear</td>
</tr>
<tr>
<td align="left">7319000.0</td>
<td align="left">Insertion fixtures bone anchored hearing prosthesis Stage 1</td>
</tr>
<tr>
<td align="left">7319100.0</td>
<td align="left">Insertion fixtures bone anchored hearing prosthesis Stage 2</td>
</tr>
<tr>
<td align="left">7319200.0</td>
<td align="left">Reduction soft tissue for bone anchored hearing prosthesis</td>
</tr>
<tr>
<td align="left">7319300.0</td>
<td align="left">Attention to fixtures for bone anchored hearing prosthesis</td>
</tr>
<tr>
<td align="left">7319400.0</td>
<td align="left">One stage insert fixtures bone anchored hearing prosthesis</td>
</tr>
<tr>
<td align="left">7319500.0</td>
<td align="left">Fitting external hearing prosthesis bone anchored fixtures</td>
</tr>
<tr>
<td align="left">7319600.0</td>
<td align="left">First stge ins fixtures for bone anchored hearing prosthesis</td>
</tr>
<tr>
<td align="left">7319.00</td>
<td align="left">Attachment of bone anchored hearing prosthesis</td>
</tr>
<tr>
<td align="left">7319700.0</td>
<td align="left">Second stage ins fixtures for bone anchored hearing prosth</td>
</tr>
<tr>
<td align="left">7319y00</td>
<td align="left">Other specified attachment bone anchored hearing prosthesis</td>
</tr>
<tr>
<td align="left">7319z00</td>
<td align="left">Attachment of bone anchored hearing prosthesis NOS</td>
</tr>
<tr>
<td align="left">8D21.00</td>
<td align="left">Provide head worn hearing aid</td>
</tr>
<tr>
<td align="left">8D22.00</td>
<td align="left">Provide body worn hearing aid</td>
</tr>
<tr>
<td align="left">8D23.00</td>
<td align="left">Ear fitting hearing aid</td>
</tr>
<tr>
<td align="left">8D24.00</td>
<td align="left">Replace hearing aid battery</td>
</tr>
<tr>
<td align="left">8D26.00</td>
<td align="left">Provision of replacement hearing aid</td>
</tr>
<tr>
<td align="left">8D2..12</td>
<td align="left">Hearing aid provision</td>
</tr>
<tr>
<td align="left">8E3..00</td>
<td align="left">Deafness remedial therapy</td>
</tr>
<tr>
<td align="left">8E3Z.00</td>
<td align="left">Deafness remedial therapy NOS</td>
</tr>
<tr>
<td align="left">8HT2.00</td>
<td align="left">Referral to hearing aid clinic</td>
</tr>
<tr>
<td align="left">8M41.00</td>
<td align="left">Hearing aid requested</td>
</tr>
<tr>
<td align="left">9N0b.00</td>
<td align="left">Seen in hearing aid clinic</td>
</tr>
<tr>
<td align="left">9NfB.00</td>
<td align="left">Requires deafblind communicator guide</td>
</tr>
<tr>
<td align="left">A560200</td>
<td align="left">Rubella deafness</td>
</tr>
<tr>
<td align="left">F580100</td>
<td align="left">Presbyacusis</td>
</tr>
<tr>
<td align="left">F580111</td>
<td align="left">Senile presbyacusis</td>
</tr>
<tr>
<td align="left">F581200</td>
<td align="left">Noise-induced hearing loss</td>
</tr>
<tr>
<td align="left">F581211</td>
<td align="left">Noise induced deafness</td>
</tr>
<tr>
<td align="left">F582.00</td>
<td align="left">Unspecified sudden hearing loss</td>
</tr>
<tr>
<td align="left">F590000</td>
<td align="left">Unspecified conductive hearing loss</td>
</tr>
<tr>
<td align="left">F590100</td>
<td align="left">Conductive hearing loss due to disorder of external ear</td>
</tr>
<tr>
<td align="left">F590200</td>
<td align="left">Conductive hearing loss due to disorder of tympanic membrane</td>
</tr>
<tr>
<td align="left">F590300</td>
<td align="left">Conductive hearing loss due to disorder of middle ear</td>
</tr>
<tr>
<td align="left">F590400</td>
<td align="left">Conductive hearing loss due to disorder of inner ear</td>
</tr>
<tr>
<td align="left">F590500</td>
<td align="left">Conductive hearing loss, bilateral</td>
</tr>
<tr>
<td align="left">F590600</td>
<td align="left">Conduct hear loss,unilat+unrestric hearing on contralat side</td>
</tr>
<tr>
<td align="left">F590.00</td>
<td align="left">Conductive hearing loss</td>
</tr>
<tr>
<td align="left">F590.11</td>
<td align="left">Conductive deafness</td>
</tr>
<tr>
<td align="left">F590y00</td>
<td align="left">Combined conductive hearing loss</td>
</tr>
<tr>
<td align="left">F590z00</td>
<td align="left">Conductive hearing loss NOS</td>
</tr>
<tr>
<td align="left">F591000</td>
<td align="left">Unspecified perceptive hearing loss</td>
</tr>
<tr>
<td align="left">F591100</td>
<td align="left">Sensory hearing loss</td>
</tr>
<tr>
<td align="left">F591200</td>
<td align="left">Neural hearing loss</td>
</tr>
<tr>
<td align="left">F591211</td>
<td align="left">Nerve deafness</td>
</tr>
<tr>
<td align="left">F591300</td>
<td align="left">Central hearing loss</td>
</tr>
<tr>
<td align="left">F591400</td>
<td align="left">Congenital sensorineural deafness</td>
</tr>
<tr>
<td align="left">F591500</td>
<td align="left">Ototoxicity - deafness</td>
</tr>
<tr>
<td align="left">F591511</td>
<td align="left">Drug ototoxicity - deafness</td>
</tr>
<tr>
<td align="left">F591600</td>
<td align="left">Sensorineural hearing loss, bilateral</td>
</tr>
<tr>
<td align="left">F591700</td>
<td align="left">Sensorineurl hear loss,unilat unrestrict hear/contralat side</td>
</tr>
<tr>
<td align="left">F591800</td>
<td align="left">Congenital prelingual deafness</td>
</tr>
<tr>
<td align="left">F591900</td>
<td align="left">Bilateral profound sensorineural hearing loss</td>
</tr>
<tr>
<td align="left">F591A00</td>
<td align="left">Bilateral congenital sensorineural hearing loss</td>
</tr>
<tr>
<td align="left">F591B00</td>
<td align="left">Profound sensorineural hearing loss</td>
</tr>
<tr>
<td align="left">F591C00</td>
<td align="left">Moderate sensorineural hearing loss</td>
</tr>
<tr>
<td align="left">F591D00</td>
<td align="left">Mild sensorineural hearing loss</td>
</tr>
<tr>
<td align="left">F591E00</td>
<td align="left">Severe sensorineural hearing loss</td>
</tr>
<tr>
<td align="left">F591.00</td>
<td align="left">Sensorineural hearing loss</td>
</tr>
<tr>
<td align="left">F591.11</td>
<td align="left">High frequency deafness</td>
</tr>
<tr>
<td align="left">F591.12</td>
<td align="left">Low frequency deafness</td>
</tr>
<tr>
<td align="left">F591.13</td>
<td align="left">Perceptive deafness</td>
</tr>
<tr>
<td align="left">F591.14</td>
<td align="left">Perceptive hearing loss</td>
</tr>
<tr>
<td align="left">F591y00</td>
<td align="left">Combined perceptive hearing loss</td>
</tr>
<tr>
<td align="left">F591z00</td>
<td align="left">Perceptive hearing loss NOS</td>
</tr>
<tr>
<td align="left">F592000</td>
<td align="left">Mix cond/sensneurl hear loss,unlat unrestrc hear/contrlat sd</td>
</tr>
<tr>
<td align="left">F592100</td>
<td align="left">Mixed conductive and sensorineural hearing loss, bilateral</td>
</tr>
<tr>
<td align="left">F592.00</td>
<td align="left">Mixed conductive and sensorineural deafness</td>
</tr>
<tr>
<td align="left">F592.11</td>
<td align="left">Mixed hearing loss</td>
</tr>
<tr>
<td align="left">F593.00</td>
<td align="left">Deaf mutism, NEC</td>
</tr>
<tr>
<td align="left">F594.00</td>
<td align="left">High frequency deafness</td>
</tr>
<tr>
<td align="left">F595.00</td>
<td align="left">Low frequency deafness</td>
</tr>
<tr>
<td align="left">F596.00</td>
<td align="left">Maternally inherited deafness</td>
</tr>
<tr>
<td align="left">F597.00</td>
<td align="left">Mild acquired hearing loss</td>
</tr>
<tr>
<td align="left">F598.00</td>
<td align="left">Moderate acquired hearing loss</td>
</tr>
<tr>
<td align="left">F599.00</td>
<td align="left">Severe acquired hearing loss</td>
</tr>
<tr>
<td align="left">F59A.00</td>
<td align="left">Profound acquired hearing loss</td>
</tr>
<tr>
<td align="left">F59A.11</td>
<td align="left">Deafened</td>
</tr>
<tr>
<td align="left">F59..00</td>
<td align="left">Hearing loss</td>
</tr>
<tr>
<td align="left">F59..11</td>
<td align="left">Deafness</td>
</tr>
<tr>
<td align="left">F59y.00</td>
<td align="left">Other specified forms of hearing loss</td>
</tr>
<tr>
<td align="left">F59z.00</td>
<td align="left">Deafness NOS</td>
</tr>
<tr>
<td align="left">F59z.11</td>
<td align="left">Chronic deafness</td>
</tr>
<tr>
<td align="left">F5A..00</td>
<td align="left">Hearing impairment</td>
</tr>
<tr>
<td align="left">Fy1..00</td>
<td align="left">Combined visual and hearing impairment</td>
</tr>
<tr>
<td align="left">FyuU000</td>
<td align="left">[X]Deaf mutism, not elsewhere classified</td>
</tr>
<tr>
<td align="left">FyuU100</td>
<td align="left">[X]Other specified hearing loss</td>
</tr>
<tr>
<td align="left">P400.00</td>
<td align="left">Ear anomalies with hearing impaired, unspecified</td>
</tr>
<tr>
<td align="left">P402.00</td>
<td align="left">Other external ear anomaly with hearing impairment</td>
</tr>
<tr>
<td align="left">P402z00</td>
<td align="left">Other external ear anomaly with hearing impairment NOS</td>
</tr>
<tr>
<td align="left">P40..00</td>
<td align="left">Ear anomalies with hearing impairment</td>
</tr>
<tr>
<td align="left">P40z.00</td>
<td align="left">Other and unspecified ear anomaly with hearing impaired</td>
</tr>
<tr>
<td align="left">P40z.11</td>
<td align="left">Deafness due to congenital anomaly NEC</td>
</tr>
<tr>
<td align="left">P40zz00</td>
<td align="left">Ear anomaly with hearing impaired NOS</td>
</tr>
<tr>
<td align="left">PKyP.00</td>
<td align="left">Diab insipidus,diab mell,optic atrophy and deafness</td>
</tr>
<tr>
<td align="left">Pyu1B00</td>
<td align="left">[X]Malformation of ear with impairment of hearing, unspec</td>
</tr>
<tr>
<td align="left">Z8B5100</td>
<td align="left">Able to use hearing aid</td>
</tr>
<tr>
<td align="left">Z8B5300</td>
<td align="left">Does use hearing aid</td>
</tr>
<tr>
<td align="left">Z8B5311</td>
<td align="left">Uses hearing aid</td>
</tr>
<tr>
<td align="left">Z8B5500</td>
<td align="left">Difficulty using hearing aid</td>
</tr>
<tr>
<td align="left">Z8B5.00</td>
<td align="left">Ability to use hearing aid</td>
</tr>
<tr>
<td align="left">Z911100</td>
<td align="left">Fit hearing aid</td>
</tr>
<tr>
<td align="left">Z911300</td>
<td align="left">Adjust hearing aid settings</td>
</tr>
<tr>
<td align="left">Z911400</td>
<td align="left">Changing hearing aid battery</td>
</tr>
<tr>
<td align="left">Z911500</td>
<td align="left">Checking hearing aid</td>
</tr>
<tr>
<td align="left">Z911700</td>
<td align="left">Switching on hearing aid</td>
</tr>
<tr>
<td align="left">Z911800</td>
<td align="left">Turning off hearing aid</td>
</tr>
<tr>
<td align="left">Z911900</td>
<td align="left">Putting on hearing aid</td>
</tr>
<tr>
<td align="left">Z911A00</td>
<td align="left">Listening for feedback whistle of hearing aid</td>
</tr>
<tr>
<td align="left">Z911B00</td>
<td align="left">Attention to hearing aid</td>
</tr>
<tr>
<td align="left">Z911E00</td>
<td align="left">Fit ear mould for existing hearing aid</td>
</tr>
<tr>
<td align="left">Z911G00</td>
<td align="left">Fit ear mould for hearing protection</td>
</tr>
<tr>
<td align="left">Z911.00</td>
<td align="left">Hearing aid procedure</td>
</tr>
<tr>
<td align="left">Z9E8100</td>
<td align="left">Hearing aid provision</td>
</tr>
<tr>
<td align="left">ZE87.00</td>
<td align="left">Hearing loss</td>
</tr>
<tr>
<td align="left">ZE87.11</td>
<td align="left">Deafness</td>
</tr>
<tr>
<td align="left">ZE87.13</td>
<td align="left">Hard of hearing</td>
</tr>
<tr>
<td align="left">ZE87.15</td>
<td align="left">HI - Hearing impairment</td>
</tr>
<tr>
<td align="left">ZE87.16</td>
<td align="left">HL - Hearing loss</td>
</tr>
<tr>
<td align="left">ZE87.17</td>
<td align="left">HOH - Hard of hearing</td>
</tr>
<tr>
<td align="left">ZE87.18</td>
<td align="left">Hearing impairment</td>
</tr>
<tr>
<td align="left">ZE87.19</td>
<td align="left">Hearing impaired</td>
</tr>
<tr>
<td align="left">ZE87.20</td>
<td align="left">Hearing impaired</td>
</tr>
<tr>
<td align="left">ZL71600</td>
<td align="left">Referral to registered hearing aid dispenser</td>
</tr>
<tr>
<td align="left">ZN56900</td>
<td align="left">Deaf telephone user</td>
</tr>
<tr>
<td align="left">ZN56A00</td>
<td align="left">Deaf-blind telephone user</td>
</tr>
<tr>
<td align="left">ZV45G00</td>
<td align="left">[V]Presence of external hearing-aid</td>
</tr>
<tr>
<td align="left">ZV45N00</td>
<td align="left">[V]Bone anchored hearing aid in situ</td>
</tr>
<tr>
<td align="left">ZV53200</td>
<td align="left">[V]Fitting or adjustment of hearing aid</td>
</tr>
<tr>
<td align="left">ZV53D00</td>
<td align="left">[V]Adjustment and management of implanted hearing device</td>
</tr>
</tbody>
</table>
<h4>Secondary care diagnoses (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//secondary_care/ICD_deaf.csv'>ICD_deaf.csv</a>)</h4>
<table>
<thead>
<tr>
<th>ICD-10 code</th>
<th>ICD-10 Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left">H90</td>
<td align="left">Conductive and sensorineural hearing loss</td>
</tr>
<tr>
<td align="left">H91</td>
<td align="left">Other hearing loss</td>
</tr>
<tr>
<td align="left">Z45.3</td>
<td align="left">Adjustment and management of implanted hearing device</td>
</tr>
<tr>
<td align="left">Z46.1</td>
<td align="left">Fitting and adjustment of hearing aid</td>
</tr>
<tr>
<td align="left">Z97.4</td>
<td align="left">Presence of external hearing-aid</td>
</tr>
</tbody>
</table>
<h2>Heart failure</h2>
<h4>Implementation</h4>
~~~
At the specified date, a patient is defined as having had 'Heart failure' IF they meet the criteria for any of the following on or before the specified date. The earliest date on which the individual meets any of the following criteria on or before the specified date is defined as the first event date:
Primary care
1. 'Heart failure' diagnosis or history of diagnosis during a consultation
OR
Secondary care (ICD10)
1. ALL diagnoses of 'Heart failure' or history of diagnosis during a hospitalization
~~~
<h4>Primary care (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//primary_care/CPRD_hf.csv'>CPRD_hf.csv</a>)</h4>
<table>
<thead>
<tr>
<th>Read code</th>
<th>Read Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left">14A6.00</td>
<td align="left">H/O: heart failure</td>
</tr>
<tr>
<td align="left">14AM.00</td>
<td align="left">H/O: Heart failure in last year</td>
</tr>
<tr>
<td align="left">1O1..00</td>
<td align="left">Heart failure confirmed</td>
</tr>
<tr>
<td align="left">388D.00</td>
<td align="left">New York Heart Assoc classification heart failure symptoms</td>
</tr>
<tr>
<td align="left">661M500</td>
<td align="left">Heart failure self-management plan agreed</td>
</tr>
<tr>
<td align="left">662f.00</td>
<td align="left">New York Heart Association classification - class I</td>
</tr>
<tr>
<td align="left">662g.00</td>
<td align="left">New York Heart Association classification - class II</td>
</tr>
<tr>
<td align="left">662h.00</td>
<td align="left">New York Heart Association classification - class III</td>
</tr>
<tr>
<td align="left">662i.00</td>
<td align="left">New York Heart Association classification - class IV</td>
</tr>
<tr>
<td align="left">662p.00</td>
<td align="left">Heart failure 6 month review</td>
</tr>
<tr>
<td align="left">662T.00</td>
<td align="left">Congestive heart failure monitoring</td>
</tr>
<tr>
<td align="left">662W.00</td>
<td align="left">Heart failure annual review</td>
</tr>
<tr>
<td align="left">679W100</td>
<td align="left">Education about deteriorating heart failure</td>
</tr>
<tr>
<td align="left">679X.00</td>
<td align="left">Heart failure education</td>
</tr>
<tr>
<td align="left">8B29.00</td>
<td align="left">Cardiac failure therapy</td>
</tr>
<tr>
<td align="left">8CeC.00</td>
<td align="left">Preferred place of care for next exacerbation heart failure</td>
</tr>
<tr>
<td align="left">8CL3.00</td>
<td align="left">Heart failure care plan discussed with patient</td>
</tr>
<tr>
<td align="left">8CMK.00</td>
<td align="left">Has heart failure management plan</td>
</tr>
<tr>
<td align="left">8CMW800</td>
<td align="left">Heart failure clinical pathway</td>
</tr>
<tr>
<td align="left">8H2S.00</td>
<td align="left">Admit heart failure emergency</td>
</tr>
<tr>
<td align="left">8HBE.00</td>
<td align="left">Heart failure follow-up</td>
</tr>
<tr>
<td align="left">8HHz.00</td>
<td align="left">Referral to heart failure exercise programme</td>
</tr>
<tr>
<td align="left">8Hk0.00</td>
<td align="left">Referred to heart failure education group</td>
</tr>
<tr>
<td align="left">9h11.00</td>
<td align="left">Excepted from LVD quality indicators: Patient unsuitable</td>
</tr>
<tr>
<td align="left">9h12.00</td>
<td align="left">Excepted from LVD quality indicators: Informed dissent</td>
</tr>
<tr>
<td align="left">9h1..00</td>
<td align="left">Exception reporting: LVD quality indicators</td>
</tr>
<tr>
<td align="left">9hH0.00</td>
<td align="left">Excepted heart failure quality indicators: Patient unsuitabl</td>
</tr>
<tr>
<td align="left">9hH1.00</td>
<td align="left">Excepted heart failure quality indicators: Informed dissent</td>
</tr>
<tr>
<td align="left">9hH..00</td>
<td align="left">Exception reporting: heart failure quality indicators</td>
</tr>
<tr>
<td align="left">9N2p.00</td>
<td align="left">Seen by community heart failure nurse</td>
</tr>
<tr>
<td align="left">9N6T.00</td>
<td align="left">Referred by heart failure nurse specialist</td>
</tr>
<tr>
<td align="left">9On0.00</td>
<td align="left">Left ventricular dysfunction monitoring first letter</td>
</tr>
<tr>
<td align="left">9On1.00</td>
<td align="left">Left ventricular dysfunction monitoring second letter</td>
</tr>
<tr>
<td align="left">9On2.00</td>
<td align="left">Left ventricular dysfunction monitoring third letter</td>
</tr>
<tr>
<td align="left">9On3.00</td>
<td align="left">Left ventricular dysfunction monitoring verbal invite</td>
</tr>
<tr>
<td align="left">9On4.00</td>
<td align="left">Left ventricular dysfunction monitoring telephone invite</td>
</tr>
<tr>
<td align="left">9On..00</td>
<td align="left">Left ventricular dysfunction monitoring administration</td>
</tr>
<tr>
<td align="left">9Or0.00</td>
<td align="left">Heart failure review completed</td>
</tr>
<tr>
<td align="left">9Or1.00</td>
<td align="left">Heart failure monitoring telephone invite</td>
</tr>
<tr>
<td align="left">9Or2.00</td>
<td align="left">Heart failure monitoring verbal invite</td>
</tr>
<tr>
<td align="left">9Or3.00</td>
<td align="left">Heart failure monitoring first letter</td>
</tr>
<tr>
<td align="left">9Or4.00</td>
<td align="left">Heart failure monitoring second letter</td>
</tr>
<tr>
<td align="left">9Or5.00</td>
<td align="left">Heart failure monitoring third letter</td>
</tr>
<tr>
<td align="left">9Or..00</td>
<td align="left">Heart failure monitoring administration</td>
</tr>
<tr>
<td align="left">G1yz100</td>
<td align="left">Rheumatic left ventricular failure</td>
</tr>
<tr>
<td align="left">G210100</td>
<td align="left">Malignant hypertensive heart disease with CCF</td>
</tr>
<tr>
<td align="left">G211100</td>
<td align="left">Benign hypertensive heart disease with CCF</td>
</tr>
<tr>
<td align="left">G21z100</td>
<td align="left">Hypertensive heart disease NOS with CCF</td>
</tr>
<tr>
<td align="left">G232.00</td>
<td align="left">Hypertensive heart&renal dis wth (congestive) heart failure</td>
</tr>
<tr>
<td align="left">G234.00</td>
<td align="left">Hyperten heart&renal dis+both(congestv)heart and renal fail</td>
</tr>
<tr>
<td align="left">G400.00</td>
<td align="left">Acute cor pulmonale</td>
</tr>
<tr>
<td align="left">G41z.11</td>
<td align="left">Chronic cor pulmonale</td>
</tr>
<tr>
<td align="left">G554000</td>
<td align="left">Congestive cardiomyopathy</td>
</tr>
<tr>
<td align="left">G554011</td>
<td align="left">Congestive obstructive cardiomyopathy</td>
</tr>
<tr>
<td align="left">G580000</td>
<td align="left">Acute congestive heart failure</td>
</tr>
<tr>
<td align="left">G580100</td>
<td align="left">Chronic congestive heart failure</td>
</tr>
<tr>
<td align="left">G580200</td>
<td align="left">Decompensated cardiac failure</td>
</tr>
<tr>
<td align="left">G580300</td>
<td align="left">Compensated cardiac failure</td>
</tr>
<tr>
<td align="left">G580400</td>
<td align="left">Congestive heart failure due to valvular disease</td>
</tr>
<tr>
<td align="left">G580.00</td>
<td align="left">Congestive heart failure</td>
</tr>
<tr>
<td align="left">G580.11</td>
<td align="left">Congestive cardiac failure</td>
</tr>
<tr>
<td align="left">G580.12</td>
<td align="left">Right heart failure</td>
</tr>
<tr>
<td align="left">G580.13</td>
<td align="left">Right ventricular failure</td>
</tr>
<tr>
<td align="left">G580.14</td>
<td align="left">Biventricular failure</td>
</tr>
<tr>
<td align="left">G581000</td>
<td align="left">Acute left ventricular failure</td>
</tr>
<tr>
<td align="left">G581.00</td>
<td align="left">Left ventricular failure</td>
</tr>
<tr>
<td align="left">G581.11</td>
<td align="left">Asthma - cardiac</td>
</tr>
<tr>
<td align="left">G581.13</td>
<td align="left">Impaired left ventricular function</td>
</tr>
<tr>
<td align="left">G582.00</td>
<td align="left">Acute heart failure</td>
</tr>
<tr>
<td align="left">G584.00</td>
<td align="left">Right ventricular failure</td>
</tr>
<tr>
<td align="left">G58..00</td>
<td align="left">Heart failure</td>
</tr>
<tr>
<td align="left">G58..11</td>
<td align="left">Cardiac failure</td>
</tr>
<tr>
<td align="left">G58z.00</td>
<td align="left">Heart failure NOS</td>
</tr>
<tr>
<td align="left">G58z.12</td>
<td align="left">Cardiac failure NOS</td>
</tr>
<tr>
<td align="left">G5yy900</td>
<td align="left">Left ventricular systolic dysfunction</td>
</tr>
<tr>
<td align="left">G5yyA00</td>
<td align="left">Left ventricular diastolic dysfunction</td>
</tr>
<tr>
<td align="left">ZRad.00</td>
<td align="left">New York Heart Assoc classification heart failure symptoms</td>
</tr>
</tbody>
</table>
<h4>Secondary care diagnoses (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//secondary_care/ICD_hf.csv'>ICD_hf.csv</a>)</h4>
<table>
<thead>
<tr>
<th>ICD-10 code</th>
<th>ICD-10 Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left">I11.0</td>
<td align="left">Hypertensive heart disease with (congestive) heart failure</td>
</tr>
<tr>
<td align="left">I13.0</td>
<td align="left">Hypertensive heart and renal disease with (congestive) heart failure</td>
</tr>
<tr>
<td align="left">I13.2</td>
<td align="left">Hypertensive heart and renal disease with both (congestive) heart failure and renal failure</td>
</tr>
<tr>
<td align="left">I50</td>
<td align="left">Heart failure</td>
</tr>
</tbody>
</table>
<h2>Hepatic failure</h2>
<h4>Implementation</h4>
~~~
At the specified date, a patient is defined as having had 'Hepatic failure' IF they meet the criteria for any of the following on or before the specified date. The earliest date on which the individual meets any of the following criteria on or before the specified date is defined as the first event date:
Primary care
1. 'Hepatic failure' diagnosis or history of diagnosis or procedure during a consultation
OR
Secondary care
1. ALL diagnoses of 'Hepatic failure' or history of diagnosis during a hospitalization
~~~
<h4>Primary care (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//primary_care/CPRD_liver_fail.csv'>CPRD_liver_fail.csv</a>)</h4>
<table>
<thead>
<tr>
<th>Read code</th>
<th>Read Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left">7L1f.00</td>
<td align="left">Compensation for liver failure</td>
</tr>
<tr>
<td align="left">7L1fz00</td>
<td align="left">Compensation for liver failure NOS</td>
</tr>
<tr>
<td align="left">A700.00</td>
<td align="left">Viral hepatitis A with coma</td>
</tr>
<tr>
<td align="left">A702.00</td>
<td align="left">Viral hepatitis B with coma</td>
</tr>
<tr>
<td align="left">A704000</td>
<td align="left">Viral hepatitis C with coma</td>
</tr>
<tr>
<td align="left">A704.00</td>
<td align="left">Other specified viral hepatitis with coma</td>
</tr>
<tr>
<td align="left">A704z00</td>
<td align="left">Other specified viral hepatitis with hepatic coma NOS</td>
</tr>
<tr>
<td align="left">J600000</td>
<td align="left">Acute hepatic failure</td>
</tr>
<tr>
<td align="left">J600011</td>
<td align="left">Acute liver failure</td>
</tr>
<tr>
<td align="left">J600200</td>
<td align="left">Acute yellow atrophy</td>
</tr>
<tr>
<td align="left">J600.00</td>
<td align="left">Acute necrosis of liver</td>
</tr>
<tr>
<td align="left">J600z00</td>
<td align="left">Acute necrosis of liver NOS</td>
</tr>
<tr>
<td align="left">J601000</td>
<td align="left">Subacute hepatic failure</td>
</tr>
<tr>
<td align="left">J601200</td>
<td align="left">Subacute yellow atrophy</td>
</tr>
<tr>
<td align="left">J601.00</td>
<td align="left">Subacute necrosis of liver</td>
</tr>
<tr>
<td align="left">J601z00</td>
<td align="left">Subacute necrosis of liver NOS</td>
</tr>
<tr>
<td align="left">J60..00</td>
<td align="left">Acute and subacute liver necrosis</td>
</tr>
<tr>
<td align="left">J60z.00</td>
<td align="left">Acute and subacute liver necrosis NOS</td>
</tr>
<tr>
<td align="left">J613000</td>
<td align="left">Alcoholic hepatic failure</td>
</tr>
<tr>
<td align="left">J622.00</td>
<td align="left">Hepatic coma</td>
</tr>
<tr>
<td align="left">J622.11</td>
<td align="left">Encephalopathy - hepatic</td>
</tr>
<tr>
<td align="left">J625.00</td>
<td align="left">[X] Hepatic failure</td>
</tr>
<tr>
<td align="left">J625.11</td>
<td align="left">[X] Liver failure</td>
</tr>
<tr>
<td align="left">J62y.11</td>
<td align="left">Hepatic failure NOS</td>
</tr>
<tr>
<td align="left">J62y.12</td>
<td align="left">Liver failure NOS</td>
</tr>
<tr>
<td align="left">J62y.13</td>
<td align="left">Hepatic failure</td>
</tr>
<tr>
<td align="left">J634.00</td>
<td align="left">Hepatic infarction</td>
</tr>
<tr>
<td align="left">J635100</td>
<td align="left">Toxic liver disease with hepatic necrosis</td>
</tr>
<tr>
<td align="left">J635700</td>
<td align="left">Acute hepatic failure due to drugs</td>
</tr>
<tr>
<td align="left">J636.00</td>
<td align="left">Central haemorrhagic necrosis of liver</td>
</tr>
<tr>
<td align="left">SP08600</td>
<td align="left">Liver transplant failure and rejection</td>
</tr>
<tr>
<td align="left">SP14200</td>
<td align="left">Hepatic failure as a complication of care</td>
</tr>
<tr>
<td align="left">SP14211</td>
<td align="left">Liver failure as a complication of care</td>
</tr>
</tbody>
</table>
<h4>Secondary care diagnoses (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//secondary_care/ICD_liver_fail.csv'>ICD_liver_fail.csv</a>)</h4>
<table>
<thead>
<tr>
<th>ICD-10 code</th>
<th>ICD-10 Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left">B15.0</td>
<td align="left">Hepatitis A with hepatic coma</td>
</tr>
<tr>
<td align="left">B16.0</td>
<td align="left">Acute hepatitis B with delta-agent (coinfection) with hepatic coma</td>
</tr>
<tr>
<td align="left">B19.0</td>
<td align="left">Unspecified viral hepatitis with hepatic coma</td>
</tr>
<tr>
<td align="left">K70.4</td>
<td align="left">Alcoholic hepatic failure</td>
</tr>
<tr>
<td align="left">K71.1</td>
<td align="left">Toxic liver disease with hepatic necrosis</td>
</tr>
<tr>
<td align="left">K72</td>
<td align="left">Hepatic failure, not elsewhere classified</td>
</tr>
<tr>
<td align="left">K76.2</td>
<td align="left">Central haemorrhagic necrosis of liver</td>
</tr>
<tr>
<td align="left">K76.3</td>
<td align="left">Infarction of liver</td>
</tr>
</tbody>
</table>
<h2>Hidradenitis suppurativa</h2>
<h4>Implementation</h4>
~~~
At the specified date, a patient is defined as having had 'Hidradenitis suppurativa' IF they meet the criteria for any of the following on or before the specified date. The earliest date on which the individual meets any of the following criteria on or before the specified date is defined as the first event date:
Primary care
1. 'Hidradenitis suppurativa' diagnosis or history of diagnosis during a consultation
OR
Secondary care (ICD10)
1. ALL diagnoses of 'Hidradenitis suppurativa' or history of diagnosis during a hospitalization
~~~
<h4>Primary care (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//primary_care/CPRD_hidradenitis.csv'>CPRD_hidradenitis.csv</a>)</h4>
<table>
<thead>
<tr>
<th>Read code</th>
<th>Read Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left">M25y100</td>
<td align="left">Hidradenitis</td>
</tr>
<tr>
<td align="left">M25y111</td>
<td align="left">Hidradenitis suppurativa</td>
</tr>
</tbody>
</table>
<h4>Secondary care diagnoses (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//secondary_care/ICD_hidradenitis.csv'>ICD_hidradenitis.csv</a>)</h4>
<table>
<thead>
<tr>
<th>ICD-10 code</th>
<th>ICD-10 Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left">L73.2</td>
<td align="left">Hidradenitis suppurativa</td>
</tr>
</tbody>
</table>
<h2>High birth weight</h2>
<h4>Implementation</h4>
~~~
At the specified date, a patient is defined as having had 'High birth weight' IF they meet the criteria for any of the following on or before the specified date. The earliest date on which the individual meets any of the following criteria on or before the specified date is defined as the first event date:
Primary care
1. 'High birth weight' diagnosis or history of diagnosis during a consultation AND IF the patient is aged < 1y at the first event date
OR
Secondary care
1. ALL diagnoses of 'High birth weight' or history of diagnosis during a hospitalization AND IF the patient is aged < 1y at the first event date
~~~
<h4>Primary care (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//primary_care/CPRD_HBW.csv'>CPRD_HBW.csv</a>)</h4>
<table>
<thead>
<tr>
<th>Read code</th>
<th>Read Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left">L266000</td>
<td align="left">Large-for-dates unspecified</td>
</tr>
<tr>
<td align="left">L266100</td>
<td align="left">Large-for-dates - delivered</td>
</tr>
<tr>
<td align="left">L266200</td>
<td align="left">Large-for-dates with antenatal problem</td>
</tr>
<tr>
<td align="left">L266z00</td>
<td align="left">Large-for-dates NOS</td>
</tr>
<tr>
<td align="left">Q120.00</td>
<td align="left">Very large baby - weight greater than 4500gm</td>
</tr>
<tr>
<td align="left">Q121.00</td>
<td align="left">Other 'large-for-dates' infant</td>
</tr>
<tr>
<td align="left">Q12..11</td>
<td align="left">Large baby born</td>
</tr>
</tbody>
</table>
<h4>Secondary care diagnoses (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//secondary_care/ICD_HBW.csv'>ICD_HBW.csv</a>)</h4>
<table>
<thead>
<tr>
<th>ICD-10 code</th>
<th>ICD-10 Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left">P08.0</td>
<td align="left">Exceptionally large baby</td>
</tr>
<tr>
<td align="left">P08.1</td>
<td align="left">Other heavy for gestational age infants</td>
</tr>
</tbody>
</table>
<h2>Hodgkin Lymphoma</h2>
<h4>Implementation</h4>
~~~
At the specified date, a patient is defined as having had 'Hodgkin Lymphoma' IF they meet the criteria for any of the following on or before the specified date. The earliest date on which the individual meets any of the following criteria on or before the specified date is defined as the first event date:
Primary care
1. 'Hodgkin Lymphoma' diagnosis or history of diagnosis during a consultation
OR
Secondary care
1. ALL diagnoses of 'Hodgkin Lymphoma' or history of diagnosis during a hospitalization
~~~
<h4>Primary care (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//primary_care/CPRD_hodgkins.csv'>CPRD_hodgkins.csv</a>)</h4>
<table>
<thead>
<tr>
<th>Read code</th>
<th>Read Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left">B610100</td>
<td align="left">Hodgkin's paragranuloma of lymph nodes of head, face, neck</td>
</tr>
<tr>
<td align="left">B610300</td>
<td align="left">Hodgkin's paragranuloma of intra-abdominal lymph nodes</td>
</tr>
<tr>
<td align="left">B610.00</td>
<td align="left">Hodgkin's paragranuloma</td>
</tr>
<tr>
<td align="left">B611100</td>
<td align="left">Hodgkin's granuloma of lymph nodes of head, face and neck</td>
</tr>
<tr>
<td align="left">B611.00</td>
<td align="left">Hodgkin's granuloma</td>
</tr>
<tr>
<td align="left">B612400</td>
<td align="left">Hodgkin's sarcoma of lymph nodes of axilla and upper limb</td>
</tr>
<tr>
<td align="left">B612.00</td>
<td align="left">Hodgkin's sarcoma</td>
</tr>
<tr>
<td align="left">B613000</td>
<td align="left">Hodgkin's, lymphocytic-histiocytic predominance unspec site</td>
</tr>
<tr>
<td align="left">B613100</td>
<td align="left">Hodgkin's, lymphocytic-histiocytic pred of head, face, neck</td>
</tr>
<tr>
<td align="left">B613200</td>
<td align="left">Hodgkin's, lymphocytic-histiocytic pred intrathoracic nodes</td>
</tr>
<tr>
<td align="left">B613300</td>
<td align="left">Hodgkin's, lymphocytic-histiocytic pred intra-abdominal node</td>
</tr>
<tr>
<td align="left">B613500</td>
<td align="left">Hodgkin's, lymphocytic-histiocytic pred inguinal and leg</td>
</tr>
<tr>
<td align="left">B613600</td>
<td align="left">Hodgkin's, lymphocytic-histiocytic pred intrapelvic nodes</td>
</tr>
<tr>
<td align="left">B613700</td>
<td align="left">Hodgkin's, lymphocytic-histiocytic predominance of spleen</td>
</tr>
<tr>
<td align="left">B613800</td>
<td align="left">Hodgkin's, lymphocytic-histiocytic pred of multiple sites</td>
</tr>
<tr>
<td align="left">B613.00</td>
<td align="left">Hodgkin's disease, lymphocytic-histiocytic predominance</td>
</tr>
<tr>
<td align="left">B613z00</td>
<td align="left">Hodgkin's, lymphocytic-histiocytic predominance NOS</td>
</tr>
<tr>
<td align="left">B614000</td>
<td align="left">Hodgkin's disease, nodular sclerosis of unspecified site</td>
</tr>
<tr>
<td align="left">B614100</td>
<td align="left">Hodgkin's nodular sclerosis of head, face and neck</td>
</tr>
<tr>
<td align="left">B614200</td>
<td align="left">Hodgkin's nodular sclerosis of intrathoracic lymph nodes</td>
</tr>
<tr>
<td align="left">B614300</td>
<td align="left">Hodgkin's nodular sclerosis of intra-abdominal lymph nodes</td>
</tr>
<tr>
<td align="left">B614400</td>
<td align="left">Hodgkin's nodular sclerosis of lymph nodes of axilla and arm</td>
</tr>
<tr>
<td align="left">B614700</td>
<td align="left">Hodgkin's disease, nodular sclerosis of spleen</td>
</tr>
<tr>
<td align="left">B614800</td>
<td align="left">Hodgkin's nodular sclerosis of lymph nodes of multiple sites</td>
</tr>
<tr>
<td align="left">B614.00</td>
<td align="left">Hodgkin's disease, nodular sclerosis</td>
</tr>
<tr>
<td align="left">B614z00</td>
<td align="left">Hodgkin's disease, nodular sclerosis NOS</td>
</tr>
<tr>
<td align="left">B615000</td>
<td align="left">Hodgkin's disease, mixed cellularity of unspecified site</td>
</tr>
<tr>
<td align="left">B615100</td>
<td align="left">Hodgkin's mixed cellularity of lymph nodes head, face, neck</td>
</tr>
<tr>
<td align="left">B615200</td>
<td align="left">Hodgkin's mixed cellularity of intrathoracic lymph nodes</td>
</tr>
<tr>
<td align="left">B615500</td>
<td align="left">Hodgkin's mixed cellularity of lymph nodes inguinal and leg</td>
</tr>
<tr>
<td align="left">B615.00</td>
<td align="left">Hodgkin's disease, mixed cellularity</td>
</tr>
<tr>
<td align="left">B615z00</td>
<td align="left">Hodgkin's disease, mixed cellularity NOS</td>
</tr>
<tr>
<td align="left">B616000</td>
<td align="left">Hodgkin's lymphocytic depletion of unspecified site</td>
</tr>
<tr>
<td align="left">B616400</td>
<td align="left">Hodgkin's lymphocytic depletion lymph nodes axilla and arm</td>
</tr>
<tr>
<td align="left">B616500</td>
<td align="left">Hodgkin's lymphocytic depletion lymph nodes inguinal and leg</td>
</tr>
<tr>
<td align="left">B616700</td>
<td align="left">Hodgkin's disease, lymphocytic depletion of spleen</td>
</tr>
<tr>
<td align="left">B616800</td>
<td align="left">Hodgkin's lymphocytic depletion lymph nodes multiple sites</td>
</tr>
<tr>
<td align="left">B616.00</td>
<td align="left">Hodgkin's disease, lymphocytic depletion</td>
</tr>
<tr>
<td align="left">B616z00</td>
<td align="left">Hodgkin's disease, lymphocytic depletion NOS</td>
</tr>
<tr>
<td align="left">B617.00</td>
<td align="left">Nodular lymphocyte predominant Hodgkin lymphoma</td>
</tr>
<tr>
<td align="left">B618.00</td>
<td align="left">Nodular sclerosis classical Hodgkin lymphoma</td>
</tr>
<tr>
<td align="left">B619.00</td>
<td align="left">Mixed cellularity classical Hodgkin lymphoma</td>
</tr>
<tr>
<td align="left">B61..00</td>
<td align="left">Hodgkin's disease</td>
</tr>
<tr>
<td align="left">B61..11</td>
<td align="left">Hodgkin lymphoma</td>
</tr>
<tr>
<td align="left">B61B.00</td>
<td align="left">Lymphocyte-rich classical Hodgkin lymphoma</td>
</tr>
<tr>
<td align="left">B61C.00</td>
<td align="left">Other classical Hodgkin lymphoma</td>
</tr>
<tr>
<td align="left">B61z000</td>
<td align="left">Hodgkin's disease NOS, unspecified site</td>
</tr>
<tr>
<td align="left">B61z100</td>
<td align="left">Hodgkin's disease NOS of lymph nodes of head, face and neck</td>
</tr>
<tr>
<td align="left">B61z200</td>
<td align="left">Hodgkin's disease NOS of intrathoracic lymph nodes</td>
</tr>
<tr>
<td align="left">B61z300</td>
<td align="left">Hodgkin's disease NOS of intra-abdominal lymph nodes</td>
</tr>
<tr>
<td align="left">B61z400</td>
<td align="left">Hodgkin's disease NOS of lymph nodes of axilla and arm</td>
</tr>
<tr>
<td align="left">B61z500</td>
<td align="left">Hodgkin's disease NOS of lymph nodes inguinal region and leg</td>
</tr>
<tr>
<td align="left">B61z700</td>
<td align="left">Hodgkin's disease NOS of spleen</td>
</tr>
<tr>
<td align="left">B61z800</td>
<td align="left">Hodgkin's disease NOS of lymph nodes of multiple sites</td>
</tr>
<tr>
<td align="left">B61z.00</td>
<td align="left">Hodgkin's disease NOS</td>
</tr>
<tr>
<td align="left">B61z.11</td>
<td align="left">Hodgkin lymphoma NOS</td>
</tr>
<tr>
<td align="left">B61zz00</td>
<td align="left">Hodgkin's disease NOS</td>
</tr>
<tr>
<td align="left">BBj0.00</td>
<td align="left">[M]Hodgkin's disease NOS</td>
</tr>
<tr>
<td align="left">BBj1000</td>
<td align="left">[M]Hodgkin,s disease, lymphocytic predominance, diffuse</td>
</tr>
<tr>
<td align="left">BBj1100</td>
<td align="left">[M]Hodgkin,s disease, lymphocytic predominance, nodular</td>
</tr>
<tr>
<td align="left">BBj1.00</td>
<td align="left">[M]Hodgkin's disease, lymphocytic predominance</td>
</tr>
<tr>
<td align="left">BBj2.00</td>
<td align="left">[M]Hodgkin's disease, mixed cellularity</td>
</tr>
<tr>
<td align="left">BBj4.00</td>
<td align="left">[M]Hodgkin's disease,lymphocytic depletion,diffuse fibrosis</td>
</tr>
<tr>
<td align="left">BBj6000</td>
<td align="left">[M]Hodgkin,s disease, nodular sclerosis, lymphocytic predom</td>
</tr>
<tr>
<td align="left">BBj6100</td>
<td align="left">[M]Hodgkin,s disease, nodular sclerosis, mixed cellularity</td>
</tr>
<tr>
<td align="left">BBj6200</td>
<td align="left">[M]Hodgkin,s disease, nodular sclerosis, lymphocytic deplet</td>
</tr>
<tr>
<td align="left">BBj6.00</td>
<td align="left">[M]Hodgkin's disease, nodular sclerosis NOS</td>
</tr>
<tr>
<td align="left">BBj7.00</td>
<td align="left">[M]Hodgkin's disease, nodular sclerosis, cellular phase</td>
</tr>
<tr>
<td align="left">BBj9.00</td>
<td align="left">[M]Hodgkin's granuloma</td>
</tr>
<tr>
<td align="left">BBj..00</td>
<td align="left">[M]Hodgkin's disease</td>
</tr>
<tr>
<td align="left">BBjz.00</td>
<td align="left">[M]Hodgkin's disease NOS</td>
</tr>
<tr>
<td align="left">ByuD000</td>
<td align="left">[X]Other Hodgkin's disease</td>
</tr>
<tr>
<td align="left">ZV10711</td>
<td align="left">[V]Personal history of Hodgkin's disease</td>
</tr>
</tbody>
</table>
<h4>Secondary care diagnoses (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//secondary_care/ICD_hodgkins.csv'>ICD_hodgkins.csv</a>)</h4>
<table>
<thead>
<tr>
<th>ICD-10 code</th>
<th>ICD-10 Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left">C81</td>
<td align="left">Hodgkin lymphoma</td>
</tr>
</tbody>
</table>
<h2>Hydrocoele (incl infected)</h2>
<h4>Implementation</h4>
~~~
At the specified date, a patient is defined as having had 'Hydrocoele (incl infected)' (incl infected) IF they meet the criteria for any of the following on or before the specified date. The earliest date on which the individual meets any of the following criteria on or before the specified date is defined as the first event date:
Primary care
1. 'Hydrocoele (incl infected)' (incl infected) diagnosis or history of diagnosis or procedure during a consultation
OR
Secondary care
1. ALL diagnoses of 'Hydrocoele (incl infected)' (incl infected) or history of diagnosis during a hospitalization
~~~
<h4>Primary care (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//primary_care/CPRD_hydrocele.csv'>CPRD_hydrocele.csv</a>)</h4>
<table>
<thead>
<tr>
<th>Read code</th>
<th>Read Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left">7C08000</td>
<td align="left">Excision of hydrocele sac</td>
</tr>
<tr>
<td align="left">7C08100</td>
<td align="left">Injection sclerotherapy of hydrocele</td>
</tr>
<tr>
<td align="left">7C08200</td>
<td align="left">Drainage of hydrocele</td>
</tr>
<tr>
<td align="left">7C08300</td>
<td align="left">Jaboulay's eversion of hydrocele</td>
</tr>
<tr>
<td align="left">7C08311</td>
<td align="left">Eversion of hydrocele</td>
</tr>
<tr>
<td align="left">7C08400</td>
<td align="left">Lord's plication of hydrocele</td>
</tr>
<tr>
<td align="left">7C08500</td>
<td align="left">Diagnostic aspiration of hydrocele</td>
</tr>
<tr>
<td align="left">7C08600</td>
<td align="left">Correction of hydrocele of infancy</td>
</tr>
<tr>
<td align="left">7C08700</td>
<td align="left">Other aspiration of hydrocele</td>
</tr>
<tr>
<td align="left">7C08711</td>
<td align="left">Other aspiration of hydrocele sac</td>
</tr>
<tr>
<td align="left">7C08712</td>
<td align="left">Tapping of hydrocele NEC</td>
</tr>
<tr>
<td align="left">7C08.00</td>
<td align="left">Excision of hydrocele</td>
</tr>
<tr>
<td align="left">7C08.11</td>
<td align="left">Operations on hydrocoele</td>
</tr>
<tr>
<td align="left">7C08.12</td>
<td align="left">Operations on hydrocoele sac</td>
</tr>
<tr>
<td align="left">7C08.13</td>
<td align="left">Operations on hydrocele</td>
</tr>
<tr>
<td align="left">7C08y00</td>
<td align="left">Other specified operation on hydrocele</td>
</tr>
<tr>
<td align="left">7C08z00</td>
<td align="left">Operation on hydrocele NOS</td>
</tr>
<tr>
<td align="left">K230.00</td>
<td align="left">Encysted hydrocele</td>
</tr>
<tr>
<td align="left">K231.00</td>
<td align="left">Infected hydrocele</td>
</tr>
<tr>
<td align="left">K23..00</td>
<td align="left">Hydrocele</td>
</tr>
<tr>
<td align="left">K23y.00</td>
<td align="left">Other types of hydrocele</td>
</tr>
<tr>
<td align="left">K23z.00</td>
<td align="left">Hydrocele NOS</td>
</tr>
<tr>
<td align="left">Kyu6200</td>
<td align="left">[X]Other hydrocele</td>
</tr>
<tr>
<td align="left">Q476.00</td>
<td align="left">Congenital hydrocele</td>
</tr>
</tbody>
</table>
<h4>Secondary care diagnoses (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//secondary_care/ICD_hydrocele.csv'>ICD_hydrocele.csv</a>)</h4>
<table>
<thead>
<tr>
<th>ICD-10 code</th>
<th>ICD-10 Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left">N43.0</td>
<td align="left">Encysted hydrocele</td>
</tr>
<tr>
<td align="left">N43.1</td>
<td align="left">Infected hydrocele</td>
</tr>
<tr>
<td align="left">N43.2</td>
<td align="left">Other hydrocele</td>
</tr>
<tr>
<td align="left">N43.3</td>
<td align="left">Hydrocele, unspecified</td>
</tr>
<tr>
<td align="left">P83.5</td>
<td align="left">Congenital hydrocele</td>
</tr>
</tbody>
</table>
<h2>Hyperkinetic disorders</h2>
<h4>Implementation</h4>
~~~
At the specified date, a patient is defined as having had 'Hyperkinetic disorders' IF they meet the criteria for any of the following on or before the specified date. The earliest date on which the individual meets any of the following criteria on or before the specified date is defined as the first event date:
Primary care
1. 'Hyperkinetic disorders' diagnosis or history of diagnosis during a consultation
OR
Secondary care
1. ALL diagnoses of 'Hyperkinetic disorders' or history of diagnosis during a hospitalization
~~~
<h4>Primary care (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//primary_care/CPRD_ADHD.csv'>CPRD_ADHD.csv</a>)</h4>
<table>
<thead>
<tr>
<th>Read code</th>
<th>Read Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left">6A61.00</td>
<td align="left">Attention deficit hyperactivity disorder annual review</td>
</tr>
<tr>
<td align="left">8BPT.00</td>
<td align="left">Drug therapy ADHD (attention deficit hyperactivity disorder)</td>
</tr>
<tr>
<td align="left">9Ngp.00</td>
<td align="left">On drug ther ADHD (attention deficit hyperactivity disorder)</td>
</tr>
<tr>
<td align="left">E2E0100</td>
<td align="left">Attention deficit with hyperactivity</td>
</tr>
<tr>
<td align="left">E2E1.00</td>
<td align="left">Hyperkinesis with developmental delay</td>
</tr>
<tr>
<td align="left">E2E2.00</td>
<td align="left">Hyperkinetic conduct disorder</td>
</tr>
<tr>
<td align="left">E2E..00</td>
<td align="left">Childhood hyperkinetic syndrome</td>
</tr>
<tr>
<td align="left">E2E..11</td>
<td align="left">Overactive child syndrome</td>
</tr>
<tr>
<td align="left">E2Ey.00</td>
<td align="left">Other hyperkinetic manifestation</td>
</tr>
<tr>
<td align="left">E2Ez.00</td>
<td align="left">Hyperkinetic syndrome NOS</td>
</tr>
<tr>
<td align="left">Eu84400</td>
<td align="left">[X]Overactive disorder assoc mental retard/stereotype movts</td>
</tr>
<tr>
<td align="left">Eu90000</td>
<td align="left">[X]Disturbance of activity and attention</td>
</tr>
<tr>
<td align="left">Eu90011</td>
<td align="left">[X]Attention deficit hyperactivity disorder</td>
</tr>
<tr>
<td align="left">Eu90100</td>
<td align="left">[X]Hyperkinetic conduct disorder</td>
</tr>
<tr>
<td align="left">Eu90111</td>
<td align="left">[X]Hyperkinetic disorder associated with conduct disorder</td>
</tr>
<tr>
<td align="left">Eu90.00</td>
<td align="left">[X]Hyperkinetic disorders</td>
</tr>
<tr>
<td align="left">Eu90y00</td>
<td align="left">[X]Other hyperkinetic disorders</td>
</tr>
<tr>
<td align="left">Eu90z00</td>
<td align="left">[X]Hyperkinetic disorder, unspecified</td>
</tr>
<tr>
<td align="left">Eu90z11</td>
<td align="left">[X]Hyperkinetic reaction of childhood or adolescence NOS</td>
</tr>
<tr>
<td align="left">Eu90z12</td>
<td align="left">[X]Hyperkinetic syndrome NOS</td>
</tr>
</tbody>
</table>
<h4>Secondary care diagnoses (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//secondary_care/ICD_ADHD.csv'>ICD_ADHD.csv</a>)</h4>
<table>
<thead>
<tr>
<th>ICD-10 code</th>
<th>ICD-10 Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left">F90</td>
<td align="left">Hyperkinetic disorders</td>
</tr>
</tbody>
</table>
<h2>Hyperparathyroidism</h2>
<h4>Implementation</h4>
~~~
At the specified date, a patient is defined as having had 'Hyperparathyroidism' IF they meet the criteria for any of the following on or before the specified date. The earliest date on which the individual meets any of the following criteria on or before the specified date is defined as the first event date:
Primary care
1. 'Hyperparathyroidism' diagnosis or history of diagnosis during a consultation
OR
Secondary care (ICD10)
1. ALL diagnoses of 'Hyperparathyroidism' or history of diagnosis during a hospitalization
~~~
<h4>Primary care (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//primary_care/CPRD_PTH.csv'>CPRD_PTH.csv</a>)</h4>
<table>
<thead>
<tr>
<th>Read code</th>
<th>Read Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left">C120000</td>
<td align="left">Primary hyperparathyroidism</td>
</tr>
<tr>
<td align="left">C120100</td>
<td align="left">Hyperparathyroid bone disease</td>
</tr>
<tr>
<td align="left">C120111</td>
<td align="left">Osteitis fibrosa cystica</td>
</tr>
<tr>
<td align="left">C120112</td>
<td align="left">Von Recklinghausen's bone disease</td>
</tr>
<tr>
<td align="left">C120200</td>
<td align="left">Tertiary hyperparathyroidism</td>
</tr>
<tr>
<td align="left">C120.00</td>
<td align="left">Hyperparathyroidism</td>
</tr>
<tr>
<td align="left">C120.11</td>
<td align="left">Osteitis fibrosa cystica</td>
</tr>
<tr>
<td align="left">C120.12</td>
<td align="left">Von Recklinghausen's bone disease</td>
</tr>
<tr>
<td align="left">C1z3100</td>
<td align="left">Ectopic hyperparathyroidism</td>
</tr>
<tr>
<td align="left">Cyu4100</td>
<td align="left">[X]Other hyperparathyroidism</td>
</tr>
<tr>
<td align="left">K08y100</td>
<td align="left">Secondary hyperparathyroidism</td>
</tr>
<tr>
<td align="left">N332500</td>
<td align="left">Brown tumour of hyperparathyroidism</td>
</tr>
</tbody>
</table>
<h4>Secondary care diagnoses (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//secondary_care/ICD_PTH.csv'>ICD_PTH.csv</a>)</h4>
<table>
<thead>
<tr>
<th>ICD-10 code</th>
<th>ICD-10 Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left">E21.0</td>
<td align="left">Primary hyperparathyroidism</td>
</tr>
<tr>
<td align="left">E21.1</td>
<td align="left">Secondary hyperparathyroidism, not elsewhere classified</td>
</tr>
<tr>
<td align="left">E21.2</td>
<td align="left">Other hyperparathyroidism</td>
</tr>
<tr>
<td align="left">E21.3</td>
<td align="left">Hyperparathyroidism, unspecified</td>
</tr>
</tbody>
</table>
<h2>Hyperplasia of prostate</h2>
<h4>Implementation</h4>
~~~
At the specified date, a patient is defined as having had Hyperplasia of prostate IF they meet the criteria for any of the following on or before the specified date. The earliest date on which the individual meets any of the following criteria on or before the specified date is defined as the first event date:
Primary care
1. Hyperplasia of prostate diagnosis or history of diagnosis during a consultation
OR
Secondary care
1. ALL diagnoses of Hyperplasia of prostate or history of diagnosis during a hospitalization
~~~
<h4>Primary care (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//primary_care/CPRD_BPH.csv'>CPRD_BPH.csv</a>)</h4>
<table>
<thead>
<tr>
<th>Read code</th>
<th>Read Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left">14E1.00</td>
<td align="left">H/O: prostatism</td>
</tr>
<tr>
<td align="left">1AA..00</td>
<td align="left">Prostatism</td>
</tr>
<tr>
<td align="left">K200.00</td>
<td align="left">Prostatic hyperplasia unspecified</td>
</tr>
<tr>
<td align="left">K201.00</td>
<td align="left">Prostatic hyperplasia of the lateral lobe</td>
</tr>
<tr>
<td align="left">K202.00</td>
<td align="left">Prostatic hyperplasia of the medial lobe</td>
</tr>
<tr>
<td align="left">K20..00</td>
<td align="left">Benign prostatic hypertrophy</td>
</tr>
<tr>
<td align="left">K20..14</td>
<td align="left">Enlarged prostate - benign</td>
</tr>
<tr>
<td align="left">K20..15</td>
<td align="left">BPH - benign prostatic hypertrophy</td>
</tr>
<tr>
<td align="left">K20..16</td>
<td align="left">Prostatism</td>
</tr>
<tr>
<td align="left">K20z.00</td>
<td align="left">Prostatic hyperplasia NOS</td>
</tr>
</tbody>
</table>
<h4>Secondary care diagnoses (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//secondary_care/ICD_BPH.csv'>ICD_BPH.csv</a>)</h4>
<table>
<thead>
<tr>
<th>ICD-10 code</th>
<th>ICD-10 Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left">N40</td>
<td align="left">Hyperplasia of prostate</td>
</tr>
</tbody>
</table>
<h2>Hypertension</h2>
<h4>Implementation</h4>
~~~
Use MODIFIED CALIBER 'Hypertension' phenotyping algorithm:
At the specified date, a patient is defined as having had 'Hypertension' IF they meet the criteria for any of the following on or before the specified date. The earliest date on which the individual meets any of the following criteria on or before the specified date is defined as the first event date:
1) Diagnosis and history of 'Hypertension' (primary or secondary) during a consultation in primary care: ht_gprd = 1 OR 3 OR 4
OR
2) Diagnosis of 'Hypertension' (primary or secondary) during a hospitalisation: ht_hes = 3 OR 4
~~~
<h4>Primary care (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//primary_care/CPRD_hypertension.csv'>CPRD_hypertension.csv</a>)</h4>
<table>
<thead>
<tr>
<th>Read code</th>
<th>Read Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left">14A2.00</td>
<td align="left">H/O: hypertension</td>
</tr>
<tr>
<td align="left">2126100</td>
<td align="left">Hypertension resolved</td>
</tr>
<tr>
<td align="left">212K.00</td>
<td align="left">Hypertension resolved</td>
</tr>
<tr>
<td align="left">9OI9.00</td>
<td align="left">Hypertens.monitor deleted</td>
</tr>
<tr>
<td align="left">6624</td>
<td align="left">Borderline hyperten:yearly obs</td>
</tr>
<tr>
<td align="left">6627</td>
<td align="left">Good hypertension control</td>
</tr>
<tr>
<td align="left">6628</td>
<td align="left">Poor hypertension control</td>
</tr>
<tr>
<td align="left">662F.00</td>
<td align="left">Hypertension treatm. started</td>
</tr>
<tr>
<td align="left">662G.00</td>
<td align="left">Hypertensive treatm.changed</td>
</tr>
<tr>
<td align="left">662O.00</td>
<td align="left">On treatment for hypertension</td>
</tr>
<tr>
<td align="left">662b.00</td>
<td align="left">Moderate hypertension control</td>
</tr>
<tr>
<td align="left">662c.00</td>
<td align="left">Hypertension six month review</td>
</tr>
<tr>
<td align="left">662d.00</td>
<td align="left">Hypertension annual review</td>
</tr>
<tr>
<td align="left">662r.00</td>
<td align="left">Trial withdrawal of antihypertensive therapy</td>
</tr>
<tr>
<td align="left">7Q01.00</td>
<td align="left">High cost hypertension drugs</td>
</tr>
<tr>
<td align="left">8B26.00</td>
<td align="left">Antihypertensive therapy</td>
</tr>
<tr>
<td align="left">8BL0.00</td>
<td align="left">Patient on maximal tolerated antihypertensive therapy</td>
</tr>
<tr>
<td align="left">8I3N.00</td>
<td align="left">Hypertension treatment refused</td>
</tr>
<tr>
<td align="left">F404200</td>
<td align="left">Blind hypertensive eye</td>
</tr>
<tr>
<td align="left">F421300</td>
<td align="left">Hypertensive retinopathy</td>
</tr>
<tr>
<td align="left">G2...00</td>
<td align="left">Hypertensive disease</td>
</tr>
<tr>
<td align="left">G2...11</td>
<td align="left">BP - hypertensive disease</td>
</tr>
<tr>
<td align="left">G20..00</td>
<td align="left">Essential hypertension</td>
</tr>
<tr>
<td align="left">G200.00</td>
<td align="left">Malignant essential hypertension</td>
</tr>
<tr>
<td align="left">G201.00</td>
<td align="left">Benign essential hypertension</td>
</tr>
<tr>
<td align="left">G202.00</td>
<td align="left">Systolic hypertension</td>
</tr>
<tr>
<td align="left">G203.00</td>
<td align="left">Diastolic hypertension</td>
</tr>
<tr>
<td align="left">G20z.00</td>
<td align="left">Essential hypertension NOS</td>
</tr>
<tr>
<td align="left">G20z.11</td>
<td align="left">Hypertension NOS</td>
</tr>
<tr>
<td align="left">G21..00</td>
<td align="left">Hypertensive heart disease</td>
</tr>
<tr>
<td align="left">G210.00</td>
<td align="left">Malignant hypertensive heart disease</td>
</tr>
<tr>
<td align="left">G210000</td>
<td align="left">Malignant hypertensive heart disease without CCF</td>
</tr>
<tr>
<td align="left">G210100</td>
<td align="left">Malignant hypertensive heart disease with CCF</td>
</tr>
<tr>
<td align="left">G211.00</td>
<td align="left">Benign hypertensive heart disease</td>
</tr>
<tr>
<td align="left">G211000</td>
<td align="left">Benign hypertensive heart disease without CCF</td>
</tr>
<tr>
<td align="left">G211100</td>
<td align="left">Benign hypertensive heart disease with CCF</td>
</tr>
<tr>
<td align="left">G21z.00</td>
<td align="left">Hypertensive heart disease NOS</td>
</tr>
<tr>
<td align="left">G21z000</td>
<td align="left">Hypertensive heart disease NOS without CCF</td>
</tr>
<tr>
<td align="left">G21z011</td>
<td align="left">Cardiomegaly - hypertensive</td>
</tr>
<tr>
<td align="left">G21z100</td>
<td align="left">Hypertensive heart disease NOS with CCF</td>
</tr>
<tr>
<td align="left">G21zz00</td>
<td align="left">Hypertensive heart disease NOS</td>
</tr>
<tr>
<td align="left">G22..00</td>
<td align="left">Hypertensive renal disease</td>
</tr>
<tr>
<td align="left">G220.00</td>
<td align="left">Malignant hypertensive renal disease</td>
</tr>
<tr>
<td align="left">G221.00</td>
<td align="left">Benign hypertensive renal disease</td>
</tr>
<tr>
<td align="left">G222.00</td>
<td align="left">Hypertensive renal disease with renal failure</td>
</tr>
<tr>
<td align="left">G22z.00</td>
<td align="left">Hypertensive renal disease NOS</td>
</tr>
<tr>
<td align="left">G22z.11</td>
<td align="left">Renal hypertension</td>
</tr>
<tr>
<td align="left">G23..00</td>
<td align="left">Hypertensive heart and renal disease</td>
</tr>
<tr>
<td align="left">G230.00</td>
<td align="left">Malignant hypertensive heart and renal disease</td>
</tr>
<tr>
<td align="left">G231.00</td>
<td align="left">Benign hypertensive heart and renal disease</td>
</tr>
<tr>
<td align="left">G232.00</td>
<td align="left">Hypertensive heart&renal dis wth (congestive) heart failure</td>
</tr>
<tr>
<td align="left">G233.00</td>
<td align="left">Hypertensive heart and renal disease with renal failure</td>
</tr>
<tr>
<td align="left">G234.00</td>
<td align="left">Hyperten heart&renal dis+both(congestv)heart and renal fail</td>
</tr>
<tr>
<td align="left">G23z.00</td>
<td align="left">Hypertensive heart and renal disease NOS</td>
</tr>
<tr>
<td align="left">G2y..00</td>
<td align="left">Other specified hypertensive disease</td>
</tr>
<tr>
<td align="left">G2z..00</td>
<td align="left">Hypertensive disease NOS</td>
</tr>
<tr>
<td align="left">G672.00</td>
<td align="left">Hypertensive encephalopathy</td>
</tr>
<tr>
<td align="left">G672.11</td>
<td align="left">Hypertensive crisis</td>
</tr>
<tr>
<td align="left">Gyu2.00</td>
<td align="left">[X]Hypertensive diseases</td>
</tr>
<tr>
<td align="left">L122.00</td>
<td align="left">Other pre-existing hypertension in preg/childbirth/puerp</td>
</tr>
<tr>
<td align="left">L122000</td>
<td align="left">Other pre-existing hypertension in preg/childb/puerp unspec</td>
</tr>
<tr>
<td align="left">L122100</td>
<td align="left">Other pre-existing hypertension in preg/childb/puerp - deliv</td>
</tr>
<tr>
<td align="left">L122300</td>
<td align="left">Other pre-exist hypertension in preg/childb/puerp-not deliv</td>
</tr>
<tr>
<td align="left">L122z00</td>
<td align="left">Other pre-existing hypertension in preg/childb/puerp NOS</td>
</tr>
<tr>
<td align="left">L127.00</td>
<td align="left">Pre-eclampsia or eclampsia with pre-existing hypertension</td>
</tr>
<tr>
<td align="left">L127z00</td>
<td align="left">Pre-eclampsia or eclampsia + pre-existing hypertension NOS</td>
</tr>
<tr>
<td align="left">L128.00</td>
<td align="left">Pre-exist hypertension compl preg childbirth and puerperium</td>
</tr>
<tr>
<td align="left">L128000</td>
<td align="left">Pre-exist hyperten heart dis compl preg childbth+puerperium</td>
</tr>
<tr>
<td align="left">L128200</td>
<td align="left">Pre-exist 2ndry hypertens comp preg childbth and puerperium</td>
</tr>
<tr>
<td align="left">TJC7.00</td>
<td align="left">Adverse reaction to other antihypertensives</td>
</tr>
<tr>
<td align="left">TJC7z00</td>
<td align="left">Adverse reaction to antihypertensives NOS</td>
</tr>
<tr>
<td align="left">U60C500</td>
<td align="left">[X]Oth antihyperten drug caus advers eff in therap use, NEC</td>
</tr>
<tr>
<td align="left">U60C511</td>
<td align="left">[X] Adverse reaction to other antihypertensives</td>
</tr>
<tr>
<td align="left">U60C51A</td>
<td align="left">[X] Adverse reaction to antihypertensives NOS</td>
</tr>
<tr>
<td align="left">6146200</td>
<td align="left">Hypertension induced by oral contraceptive pill</td>
</tr>
<tr>
<td align="left">G24..00</td>
<td align="left">Secondary hypertension</td>
</tr>
<tr>
<td align="left">G240.00</td>
<td align="left">Secondary malignant hypertension</td>
</tr>
<tr>
<td align="left">G240000</td>
<td align="left">Secondary malignant renovascular hypertension</td>
</tr>
<tr>
<td align="left">G240z00</td>
<td align="left">Secondary malignant hypertension NOS</td>
</tr>
<tr>
<td align="left">G241.00</td>
<td align="left">Secondary benign hypertension</td>
</tr>
<tr>
<td align="left">G241000</td>
<td align="left">Secondary benign renovascular hypertension</td>
</tr>
<tr>
<td align="left">G241z00</td>
<td align="left">Secondary benign hypertension NOS</td>
</tr>
<tr>
<td align="left">G244.00</td>
<td align="left">Hypertension secondary to endocrine disorders</td>
</tr>
<tr>
<td align="left">G24z.00</td>
<td align="left">Secondary hypertension NOS</td>
</tr>
<tr>
<td align="left">G24z000</td>
<td align="left">Secondary renovascular hypertension NOS</td>
</tr>
<tr>
<td align="left">G24z100</td>
<td align="left">Hypertension secondary to drug</td>
</tr>
<tr>
<td align="left">G24zz00</td>
<td align="left">Secondary hypertension NOS</td>
</tr>
<tr>
<td align="left">Gyu2100</td>
<td align="left">[X]Hypertension secondary to other renal disorders</td>
</tr>
</tbody>
</table>
<h4>Secondary care diagnoses (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//secondary_care/ICD_hypertension.csv'>ICD_hypertension.csv</a>)</h4>
<table>
<thead>
<tr>
<th>ICD-10 code</th>
<th>ICD-10 Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left">I10</td>
<td align="left">Essential (primary) hypertension</td>
</tr>
<tr>
<td align="left">I11</td>
<td align="left">Hypertensive heart disease</td>
</tr>
<tr>
<td align="left">I12</td>
<td align="left">Hypertensive renal disease</td>
</tr>
<tr>
<td align="left">I13</td>
<td align="left">Hypertensive heart and renal disease</td>
</tr>
<tr>
<td align="left">I15</td>
<td align="left">Secondary hypertension</td>
</tr>
</tbody>
</table>
<h2>Hypertrophic Cardiomyopathy</h2>
<h4>Implementation</h4>
~~~
At the specified date, a patient is defined as having had 'Hypertrophic Cardiomyopathy' IF they meet the criteria for any of the following on or before the specified date. The earliest date on which the individual meets any of the following criteria on or before the specified date is defined as the first event date:
Primary care
1. 'Hypertrophic Cardiomyopathy' diagnosis or history of diagnosis during a consultation
OR
Secondary care (ICD10)
1. ALL diagnoses of 'Hypertrophic Cardiomyopathy' or history of diagnosis during a hospitalization
~~~
<h4>Primary care (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//primary_care/CPRD_hocm.csv'>CPRD_hocm.csv</a>)</h4>
<table>
<thead>
<tr>
<th>Read code</th>
<th>Read Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left">G551.00</td>
<td align="left">Hypertrophic obstructive cardiomyopathy</td>
</tr>
<tr>
<td align="left">G554300</td>
<td align="left">Hypertrophic non-obstructive cardiomyopathy</td>
</tr>
<tr>
<td align="left">Gyu5M00</td>
<td align="left">[X]Other hypertrophic cardiomyopathy</td>
</tr>
</tbody>
</table>
<h4>Secondary care diagnoses (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//secondary_care/ICD_hocm.csv'>ICD_hocm.csv</a>)</h4>
<table>
<thead>
<tr>
<th>ICD-10 code</th>
<th>ICD-10 Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left">I42.1</td>
<td align="left">Obstructive hypertrophic cardiomyopathy</td>
</tr>
<tr>
<td align="left">I42.2</td>
<td align="left">Other hypertrophic cardiomyopathy</td>
</tr>
</tbody>
</table>
<h2>Hypertrophy of nasal turbinates</h2>
<h4>Implementation</h4>
~~~
At the specified date, a patient is defined as having had Hypertrophy of nasal turbinates IF they meet the criteria for any of the following on or before the specified date. The earliest date on which the individual meets any of the following criteria on or before the specified date is defined as the first event date:
Primary care
1. Hypertrophy of nasal turbinates diagnosis or history of diagnosis during a consultation
OR
Secondary care (ICD10)
1. ALL diagnoses of Hypertrophy of nasal turbinates or history of diagnosis during a hospitalization
~~~
<h4>Primary care (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//primary_care/CPRD_hyper_nasal_turbs.csv'>CPRD_hyper_nasal_turbs.csv</a>)</h4>
<table>
<thead>
<tr>
<th>Read code</th>
<th>Read Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left">H1y0.00</td>
<td align="left">Nasal turbinate hypertrophy</td>
</tr>
</tbody>
</table>
<h4>Secondary care diagnoses (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//secondary_care/ICD_hyper_nasal_turbs.csv'>ICD_hyper_nasal_turbs.csv</a>)</h4>
<table>
<thead>
<tr>
<th>ICD-10 code</th>
<th>ICD-10 Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left">J34.3</td>
<td align="left">Hypertrophy of nasal turbinates</td>
</tr>
</tbody>
</table>
<h2>Hypo or hyperthyroidism</h2>
<h4>Implementation</h4>
~~~
At the specified date, a patient is defined as having had Hypo or hyperthyroidism IF they meet the criteria for any of the following on or before the specified date. The earliest date on which the individual meets any of the following criteria on or before the specified date is defined as the first event date:
Primary care
1. Hypo or hyperthyroidism diagnosis or history of diagnosis during a consultation
OR
Secondary care (ICD10)
1. ALL diagnoses of Hypo or hyperthyroidism or history of diagnosis during a hospitalization
~~~
<h4>Primary care (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//primary_care/CPRD_thyroid.csv'>CPRD_thyroid.csv</a>)</h4>
<table>
<thead>
<tr>
<th>Read code</th>
<th>Read Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="right">1431</td>
<td align="left">H/O: hyperthyroidism</td>
</tr>
<tr>
<td align="right">1431.1</td>
<td align="left">H/O: thyrotoxicosis</td>
</tr>
<tr>
<td align="left">143..11</td>
<td align="left">H/O: thyroid disorder</td>
</tr>
<tr>
<td align="right">1432</td>
<td align="left">H/O: hypothyroidism</td>
</tr>
<tr>
<td align="right">1433</td>
<td align="left">H/O: thyroid disorder NOS</td>
</tr>
<tr>
<td align="left">212P.00</td>
<td align="left">Hyperthyroidism resolved</td>
</tr>
<tr>
<td align="left">66B4.00</td>
<td align="left">Thyroid eye disease</td>
</tr>
<tr>
<td align="left">66B..00</td>
<td align="left">Thyroid disease monitoring</td>
</tr>
<tr>
<td align="left">66BB.00</td>
<td align="left">Hypothyroidism annual review</td>
</tr>
<tr>
<td align="left">66BZ.00</td>
<td align="left">Thyroid disease monitoring NOS</td>
</tr>
<tr>
<td align="left">8CR5.00</td>
<td align="left">Hypothyroidism clinical management plan</td>
</tr>
<tr>
<td align="left">9Oj0.00</td>
<td align="left">Hypothyroidism monitoring first letter</td>
</tr>
<tr>
<td align="left">9Oj1.00</td>
<td align="left">Hypothyroidism monitoring second letter</td>
</tr>
<tr>
<td align="left">9Oj2.00</td>
<td align="left">Hypothyroidism monitoring third letter</td>
</tr>
<tr>
<td align="left">9Oj3.00</td>
<td align="left">Hypothyroidism monitoring verbal invite</td>
</tr>
<tr>
<td align="left">9Oj4.00</td>
<td align="left">Hypothyroidism monitoring telephone invitation</td>
</tr>
<tr>
<td align="left">9Oj..00</td>
<td align="left">Hypothyroidism monitoring administration</td>
</tr>
<tr>
<td align="left">C020000</td>
<td align="left">Toxic diffuse goitre with no crisis</td>
</tr>
<tr>
<td align="left">C020100</td>
<td align="left">Toxic diffuse goitre with crisis</td>
</tr>
<tr>
<td align="left">C020200</td>
<td align="left">Thyroid-associated dermopathy</td>
</tr>
<tr>
<td align="left">C020.00</td>
<td align="left">Toxic diffuse goitre</td>
</tr>
<tr>
<td align="left">C020.11</td>
<td align="left">Basedow's disease</td>
</tr>
<tr>
<td align="left">C020.12</td>
<td align="left">Graves' disease</td>
</tr>
<tr>
<td align="left">C020z00</td>
<td align="left">Toxic diffuse goitre NOS</td>
</tr>
<tr>
<td align="left">C021000</td>
<td align="left">Toxic uninodular goitre with no crisis</td>
</tr>
<tr>
<td align="left">C021.00</td>
<td align="left">Toxic uninodular goitre</td>
</tr>
<tr>
<td align="left">C021z00</td>
<td align="left">Toxic uninodular goitre NOS</td>
</tr>
<tr>
<td align="left">C022000</td>
<td align="left">Toxic multinodular goitre with no crisis</td>
</tr>
<tr>
<td align="left">C022.00</td>
<td align="left">Toxic multinodular goitre</td>
</tr>
<tr>
<td align="left">C022z00</td>
<td align="left">Toxic multinodular goitre NOS</td>
</tr>
<tr>
<td align="left">C023000</td>
<td align="left">Toxic nodular goitre unspecified with no crisis</td>
</tr>
<tr>
<td align="left">C023100</td>
<td align="left">Toxic nodular goitre unspecified with crisis</td>
</tr>
<tr>
<td align="left">C023.00</td>
<td align="left">Toxic nodular goitre unspecified</td>
</tr>
<tr>
<td align="left">C023z00</td>
<td align="left">Toxic nodular goitre NOS</td>
</tr>
<tr>
<td align="left">C02..00</td>
<td align="left">Thyrotoxicosis</td>
</tr>
<tr>
<td align="left">C02..11</td>
<td align="left">Hyperthyroidism</td>
</tr>
<tr>
<td align="left">C02..12</td>
<td align="left">Toxic goitre</td>
</tr>
<tr>
<td align="left">C02y000</td>
<td align="left">Thyrotoxicosis of other specified origin with no crisis</td>
</tr>
<tr>
<td align="left">C02y100</td>
<td align="left">Thyrotoxicosis of other specified origin with crisis</td>
</tr>
<tr>
<td align="left">C02y300</td>
<td align="left">Thyroid crisis</td>
</tr>
<tr>
<td align="left">C02y.00</td>
<td align="left">Thyrotoxicosis of other specified origin</td>
</tr>
<tr>
<td align="left">C02yz00</td>
<td align="left">Thyrotoxicosis of other specified origin NOS</td>
</tr>
<tr>
<td align="left">C02z000</td>
<td align="left">Thyrotoxicosis without mention of goitre or cause no crisis</td>
</tr>
<tr>
<td align="left">C02z100</td>
<td align="left">Thyrotoxicosis without mention of goitre, cause with crisis</td>
</tr>
<tr>
<td align="left">C02z.00</td>
<td align="left">Thyrotoxicosis without mention of goitre or other cause</td>
</tr>
<tr>
<td align="left">C02zz00</td>
<td align="left">Thyrotoxicosis NOS</td>
</tr>
<tr>
<td align="left">C040.00</td>
<td align="left">Postsurgical hypothyroidism</td>
</tr>
<tr>
<td align="left">C040.11</td>
<td align="left">Post ablative hypothyroidism</td>
</tr>
<tr>
<td align="left">C041000</td>
<td align="left">Irradiation hypothyroidism</td>
</tr>
<tr>
<td align="left">C041.00</td>
<td align="left">Other postablative hypothyroidism</td>
</tr>
<tr>
<td align="left">C041z00</td>
<td align="left">Postablative hypothyroidism NOS</td>
</tr>
<tr>
<td align="left">C043.00</td>
<td align="left">Other iatrogenic hypothyroidism</td>
</tr>
<tr>
<td align="left">C043z00</td>
<td align="left">Iatrogenic hypothyroidism NOS</td>
</tr>
<tr>
<td align="left">C046.00</td>
<td align="left">Autoimmune myxoedema</td>
</tr>
<tr>
<td align="left">C04..00</td>
<td align="left">Acquired hypothyroidism</td>
</tr>
<tr>
<td align="left">C04..11</td>
<td align="left">Myxoedema</td>
</tr>
<tr>
<td align="left">C04..12</td>
<td align="left">Thyroid deficiency</td>
</tr>
<tr>
<td align="left">C04..13</td>
<td align="left">Hypothyroidism</td>
</tr>
<tr>
<td align="left">C04y.00</td>
<td align="left">Other acquired hypothyroidism</td>
</tr>
<tr>
<td align="left">C04z000</td>
<td align="left">Premature puberty due to hypothyroidism</td>
</tr>
<tr>
<td align="left">C04z100</td>
<td align="left">Myxoedema coma</td>
</tr>
<tr>
<td align="left">C04z.00</td>
<td align="left">Hypothyroidism NOS</td>
</tr>
<tr>
<td align="left">C04z.11</td>
<td align="left">Pretibial myxoedema - hypothyroid</td>
</tr>
<tr>
<td align="left">C04z.12</td>
<td align="left">Thyroid insufficiency</td>
</tr>
<tr>
<td align="left">C04z.13</td>
<td align="left">Hypothyroid goitre, acquired</td>
</tr>
<tr>
<td align="left">C052.00</td>
<td align="left">Chronic lymphocytic thyroiditis</td>
</tr>
<tr>
<td align="left">C052.11</td>
<td align="left">Autoimmune thyroiditis</td>
</tr>
<tr>
<td align="left">C052.12</td>
<td align="left">Hashimoto's disease</td>
</tr>
<tr>
<td align="left">C053.00</td>
<td align="left">Chronic fibrous thyroiditis</td>
</tr>
<tr>
<td align="left">C05..00</td>
<td align="left">Thyroiditis</td>
</tr>
<tr>
<td align="left">C05y400</td>
<td align="left">Chronic thyroiditis with transient thyrotoxicosis</td>
</tr>
<tr>
<td align="left">C05y.00</td>
<td align="left">Other and unspecified chronic thyroiditis</td>
</tr>
<tr>
<td align="left">C05z.00</td>
<td align="left">Thyroiditis NOS</td>
</tr>
<tr>
<td align="left">C06y100</td>
<td align="left">Thyroid atrophy</td>
</tr>
<tr>
<td align="left">C134300</td>
<td align="left">TSH - thyroid-stimulating hormone deficiency</td>
</tr>
<tr>
<td align="left">Cyu1100</td>
<td align="left">[X]Other sp cified hypothyroidism</td>
</tr>
<tr>
<td align="left">Cyu1300</td>
<td align="left">[X]Other thyrotoxicosis</td>
</tr>
<tr>
<td align="left">Cyu1400</td>
<td align="left">[X]Other chronic thyroiditis</td>
</tr>
<tr>
<td align="left">F11x500</td>
<td align="left">Cerebral degeneration due to myxoedema</td>
</tr>
<tr>
<td align="left">F381400</td>
<td align="left">Myasthenic syndrome due to hypothyroidism</td>
</tr>
<tr>
<td align="left">F381600</td>
<td align="left">Myasthenic syndrome due to thyrotoxicosis</td>
</tr>
<tr>
<td align="left">F395300</td>
<td align="left">Myopathy due to myxoedema</td>
</tr>
<tr>
<td align="left">F395400</td>
<td align="left">Myopathy due to thyrotoxicosis</td>
</tr>
<tr>
<td align="left">F4G2000</td>
<td align="left">Thyrotoxic exophthalmos</td>
</tr>
<tr>
<td align="left">FyuBD00</td>
<td align="left">[X]Dysthyroid exophthalmos</td>
</tr>
<tr>
<td align="left">G557500</td>
<td align="left">Thyrotoxic heart disease</td>
</tr>
</tbody>
</table>
<h4>Secondary care diagnoses (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//secondary_care/ICD_thyroid.csv'>ICD_thyroid.csv</a>)</h4>
<table>
<thead>
<tr>
<th>ICD-10 code</th>
<th>ICD-10 Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left">E03.5</td>
<td align="left">Myxoedema coma</td>
</tr>
<tr>
<td align="left">E03.8</td>
<td align="left">Other specified hypothyroidism</td>
</tr>
<tr>
<td align="left">E03.9</td>
<td align="left">Hypothyroidism, unspecified</td>
</tr>
<tr>
<td align="left">E05.0</td>
<td align="left">Thyrotoxicosis with diffuse goitre</td>
</tr>
<tr>
<td align="left">E05.1</td>
<td align="left">Thyrotoxicosis with toxic single thyroid nodule</td>
</tr>
<tr>
<td align="left">E05.2</td>
<td align="left">Thyrotoxicosis with toxic multinodular goitre</td>
</tr>
<tr>
<td align="left">E05.5</td>
<td align="left">Thyroid crisis or storm</td>
</tr>
<tr>
<td align="left">E05.8</td>
<td align="left">Other thyrotoxicosis</td>
</tr>
<tr>
<td align="left">E05.9</td>
<td align="left">Thyrotoxicosis, unspecified</td>
</tr>
<tr>
<td align="left">E06.2</td>
<td align="left">Chronic thyroiditis with transient thyrotoxicosis</td>
</tr>
<tr>
<td align="left">E06.3</td>
<td align="left">Autoimmune thyroiditis</td>
</tr>
<tr>
<td align="left">E06.5</td>
<td align="left">Other chronic thyroiditis</td>
</tr>
<tr>
<td align="left">E06.9</td>
<td align="left">Thyroiditis, unspecified</td>
</tr>
<tr>
<td align="left">H06.2</td>
<td align="left">Dysthyroid exophthalmos</td>
</tr>
</tbody>
</table>
<h2>Hyposplenism</h2>
<h4>Implementation</h4>
~~~
At the specified date, a patient is defined as having had 'Hyposplenism' IF they meet the criteria for any of the following on or before the specified date. The earliest date on which the individual meets any of the following criteria on or before the specified date is defined as the first event date:
Primary care
1. 'Hyposplenism' diagnosis or history of diagnosis or procedure during a consultation
OR
Secondary care (ICD10)
1. ALL diagnoses of 'Hyposplenism' or history of diagnosis during a hospitalization
~~~
<h4>Primary care (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//primary_care/CPRD_hyposplenism.csv'>CPRD_hyposplenism.csv</a>)</h4>
<table>
<thead>
<tr>
<th>Read code</th>
<th>Read Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left">14N7.00</td>
<td align="left">H/O: splenectomy</td>
</tr>
<tr>
<td align="left">7840100.0</td>
<td align="left">Total splenectomy</td>
</tr>
<tr>
<td align="left">7840300.0</td>
<td align="left">Splenectomy NEC</td>
</tr>
<tr>
<td align="left">7840400.0</td>
<td align="left">Laparoscopic total splenectomy</td>
</tr>
<tr>
<td align="left">7840.00</td>
<td align="left">Total excision of spleen</td>
</tr>
<tr>
<td align="left">7840.11</td>
<td align="left">Total splenectomy</td>
</tr>
<tr>
<td align="left">7840y00</td>
<td align="left">Other specified total excision of spleen</td>
</tr>
<tr>
<td align="left">7840z00</td>
<td align="left">Total excision of spleen NOS</td>
</tr>
<tr>
<td align="left">7841.00</td>
<td align="left">Other excision of spleen</td>
</tr>
<tr>
<td align="left">7841y00</td>
<td align="left">Other specified other excision of spleen</td>
</tr>
<tr>
<td align="left">7841z00</td>
<td align="left">Other excision of spleen NOS</td>
</tr>
<tr>
<td align="left">D415400</td>
<td align="left">Splenic atrophy</td>
</tr>
<tr>
<td align="left">D415600</td>
<td align="left">Splenic fibrosis</td>
</tr>
<tr>
<td align="left">D415700</td>
<td align="left">Splenic infarction</td>
</tr>
<tr>
<td align="left">D415800</td>
<td align="left">Non-traumatic rupture of spleen</td>
</tr>
<tr>
<td align="left">D415A00</td>
<td align="left">Hyposplenism</td>
</tr>
<tr>
<td align="left">PK01.00</td>
<td align="left">Absent spleen</td>
</tr>
<tr>
<td align="left">PK01.11</td>
<td align="left">Asplenia</td>
</tr>
<tr>
<td align="left">PK06.00</td>
<td align="left">Hypoplasia of spleen</td>
</tr>
</tbody>
</table>
<h4>Secondary care diagnoses (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//secondary_care/ICD_hyposplenism.csv'>ICD_hyposplenism.csv</a>)</h4>
<table>
<thead>
<tr>
<th>ICD-10 code</th>
<th>ICD-10 Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left">D73.0</td>
<td align="left">Hyposplenism</td>
</tr>
<tr>
<td align="left">D73.5</td>
<td align="left">Infarction of spleen</td>
</tr>
</tbody>
</table>
<h2>Immunodeficiencies</h2>
<h4>Implementation</h4>
~~~
At the specified date, a patient is defined as having had 'Immunodeficiencies' IF they meet the criteria for any of the following on or before the specified date. The earliest date on which the individual meets any of the following criteria on or before the specified date is defined as the first event date:
Primary care
1. 'Immunodeficiencies' diagnosis or history of diagnosis during a consultation
OR
Secondary care (ICD10)
1. ALL diagnoses of 'Immunodeficiencies' or history of diagnosis during a hospitalization
~~~
<h4>Primary care (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//primary_care/CPRD_immunodef.csv'>CPRD_immunodef.csv</a>)</h4>
<table>
<thead>
<tr>
<th>Read code</th>
<th>Read Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left">C390000</td>
<td align="left">Hypogammaglobulinaemia NOS</td>
</tr>
<tr>
<td align="left">C390100</td>
<td align="left">Selective IgA immunodeficiency</td>
</tr>
<tr>
<td align="left">C390200</td>
<td align="left">Selective IgM immunodeficiency</td>
</tr>
<tr>
<td align="left">C390300</td>
<td align="left">Selective IgG immunodeficiency</td>
</tr>
<tr>
<td align="left">C390400</td>
<td align="left">Other selective immunoglobulin deficiency</td>
</tr>
<tr>
<td align="left">C390500</td>
<td align="left">Congenital hypogammaglobulinaemia</td>
</tr>
<tr>
<td align="left">C390511</td>
<td align="left">Bruton's agammaglobulinaemia</td>
</tr>
<tr>
<td align="left">C390512</td>
<td align="left">Congenital X-linked agammaglobulinaemia</td>
</tr>
<tr>
<td align="left">C390600</td>
<td align="left">Immunodeficiency with IgM hypergammaglobulinaemia</td>
</tr>
<tr>
<td align="left">C390700</td>
<td align="left">Common variable immunodeficiency</td>
</tr>
<tr>
<td align="left">C390800</td>
<td align="left">Transient infant hypogammaglobulinaemia</td>
</tr>
<tr>
<td align="left">C390900</td>
<td align="left">Agammaglobulinaemia NEC</td>
</tr>
<tr>
<td align="left">C390A00</td>
<td align="left">Dysimmunoglobulinaemia NEC</td>
</tr>
<tr>
<td align="left">C390A11</td>
<td align="left">Dysgammaglobulinaemia NEC</td>
</tr>
<tr>
<td align="left">C390B00</td>
<td align="left">Antibod def wth nr-norm imunoglob/or wth hyperimunoglobaemia</td>
</tr>
<tr>
<td align="left">C390.00</td>
<td align="left">Deficiencies of humoral immunity</td>
</tr>
<tr>
<td align="left">C390.11</td>
<td align="left">Agammaglobulinaemia</td>
</tr>
<tr>
<td align="left">C390y00</td>
<td align="left">Other specified deficiency of humoral immunity</td>
</tr>
<tr>
<td align="left">C390z00</td>
<td align="left">Deficiency of humoral immunity NOS</td>
</tr>
<tr>
<td align="left">C391000</td>
<td align="left">Predominantly T-cell immuno-deficiency NOS</td>
</tr>
<tr>
<td align="left">C391011</td>
<td align="left">T-lymphocyte deficiency</td>
</tr>
<tr>
<td align="left">C391012</td>
<td align="left">Cellular immunity syndrome</td>
</tr>
<tr>
<td align="left">C391100</td>
<td align="left">Di George syndrome</td>
</tr>
<tr>
<td align="left">C391200</td>
<td align="left">Wiskott - Aldrich syndrome</td>
</tr>
<tr>
<td align="left">C391211</td>
<td align="left">Thrombocytopenic eczema with immunodeficiency</td>
</tr>
<tr>
<td align="left">C391.00</td>
<td align="left">Deficiencies of cell-mediated immunity</td>
</tr>
<tr>
<td align="left">C392100</td>
<td align="left">Severe combined immunodeficiency</td>
</tr>
<tr>
<td align="left">C392111</td>
<td align="left">Swiss type agammaglobulinaemia</td>
</tr>
<tr>
<td align="left">C392300</td>
<td align="left">Severe combined immunodefiency with reticular dysgenesis</td>
</tr>
<tr>
<td align="left">C392400</td>
<td align="left">Severe combined immunodef with low T- and B-cell numbers</td>
</tr>
<tr>
<td align="left">C392500</td>
<td align="left">Severe combined immunodef with low or normal B-cell numbers</td>
</tr>
<tr>
<td align="left">C392600</td>
<td align="left">Adenosine deaminase deficiency</td>
</tr>
<tr>
<td align="left">C392700</td>
<td align="left">Purine nucleoside phosphorylase deficiency</td>
</tr>
<tr>
<td align="left">C392800</td>
<td align="left">Major histocompatibility complex class I deficiency</td>
</tr>
<tr>
<td align="left">C392900</td>
<td align="left">Major histocompatibility complex class II deficiency</td>
</tr>
<tr>
<td align="left">C392.00</td>
<td align="left">Combined immunity deficiency</td>
</tr>
<tr>
<td align="left">C392z00</td>
<td align="left">Combined immunity deficiency NOS</td>
</tr>
<tr>
<td align="left">C393.00</td>
<td align="left">Unspecified immunity deficiency</td>
</tr>
<tr>
<td align="left">C395.00</td>
<td align="left">Immunodeficiency with short-limbed stature</td>
</tr>
<tr>
<td align="left">C396.00</td>
<td align="left">Immunodef follow hereditary defect respon Epstein-Barr vir</td>
</tr>
<tr>
<td align="left">C397.00</td>
<td align="left">Hyperimmunoglobulin E syndrome</td>
</tr>
<tr>
<td align="left">C398000</td>
<td align="left">Com var immunodef with predom abn B-cell numbers and functns</td>
</tr>
<tr>
<td align="left">C398200</td>
<td align="left">Common variable immunodef wth autoantibod to B- or T-cells</td>
</tr>
<tr>
<td align="left">C398.00</td>
<td align="left">Common variable immunodeficiency</td>
</tr>
<tr>
<td align="left">C39X.00</td>
<td align="left">Immunodeficiency associated+major defect, unspecified</td>
</tr>
<tr>
<td align="left">C39y000</td>
<td align="left">Lymphocyte function antigen-1 defect</td>
</tr>
<tr>
<td align="left">Cyu0000</td>
<td align="left">[X]Other immunodeficiencies+predominantly antibody defects</td>
</tr>
<tr>
<td align="left">Cyu0400</td>
<td align="left">[X]Other common variable immunodeficiencies</td>
</tr>
<tr>
<td align="left">Cyu0500</td>
<td align="left">[X]Other specified immunodeficiency disorders</td>
</tr>
</tbody>
</table>
<h4>Secondary care diagnoses (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//secondary_care/ICD_immunodef.csv'>ICD_immunodef.csv</a>)</h4>
<table>
<thead>
<tr>
<th>ICD-10 code</th>
<th>ICD-10 Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left">D80</td>
<td align="left">Immunodeficiency with predominantly antibody defects</td>
</tr>
<tr>
<td align="left">D81</td>
<td align="left">Combined immunodeficiencies</td>
</tr>
<tr>
<td align="left">D82</td>
<td align="left">Immunodeficiency associated with other major defects</td>
</tr>
<tr>
<td align="left">D83</td>
<td align="left">Common variable immunodeficiency</td>
</tr>
<tr>
<td align="left">D84.0</td>
<td align="left">Lymphocyte function antigen-1 [LFA-1] defect</td>
</tr>
<tr>
<td align="left">D84.8</td>
<td align="left">Other specified immunodeficiencies</td>
</tr>
<tr>
<td align="left">D84.9</td>
<td align="left">Immunodeficiency, unspecified</td>
</tr>
</tbody>
</table>
<h2>Infection of anal and rectal regions</h2>
<h4>Implementation</h4>
~~~
At the specified date, a patient is defined as having had Infection of anal and rectal regions IF they meet the criteria for any of the following on or before the specified date. The earliest date on which the individual meets any of the following criteria on or before the specified date is defined as the first event date:
Secondary care
1. ALL diagnoses of Infection of anal and rectal regions or history of diagnosis during a hospitalization
~~~
<h4>Secondary care diagnoses (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//secondary_care/ICD_anorectal.csv'>ICD_anorectal.csv</a>)</h4>
<table>
<thead>
<tr>
<th>ICD-10 code</th>
<th>ICD-10 Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left">A51.1</td>
<td align="left">Primary anal syphilis</td>
</tr>
<tr>
<td align="left">A54.6</td>
<td align="left">Gonococcal infection of anus and rectum</td>
</tr>
<tr>
<td align="left">A56.3</td>
<td align="left">Chlamydial infection of anus and rectum</td>
</tr>
<tr>
<td align="left">A60.1</td>
<td align="left">Herpesviral infection of perianal skin and rectum</td>
</tr>
<tr>
<td align="left">A60.9</td>
<td align="left">Anogenital herpesviral infection, unspecified</td>
</tr>
<tr>
<td align="left">A63.0</td>
<td align="left">Anogenital (venereal) warts</td>
</tr>
<tr>
<td align="left">K61</td>
<td align="left">Abscess of anal and rectal regions</td>
</tr>
</tbody>
</table>
<h2>Infection of bones and joints</h2>
<h4>Implementation</h4>
~~~
At the specified date, a patient is defined as having had Infection of bones and joints IF they meet the criteria for any of the following on or before the specified date. The earliest date on which the individual meets any of the following criteria on or before the specified date is defined as the first event date:
Secondary care
1. ALL diagnoses of Infection of bones and joints or history of diagnosis during a hospitalization
~~~
<h4>Secondary care diagnoses (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//secondary_care/ICD_bone.csv'>ICD_bone.csv</a>)</h4>
<table>
<thead>
<tr>
<th>ICD-10 code</th>
<th>ICD-10 Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left">A18.0</td>
<td align="left">Tuberculosis of bones and joints</td>
</tr>
<tr>
<td align="left">A54.4</td>
<td align="left">Gonococcal infection of musculoskeletal system</td>
</tr>
<tr>
<td align="left">B45.3</td>
<td align="left">Osseous cryptococcosis</td>
</tr>
<tr>
<td align="left">B67.2</td>
<td align="left">Echinococcus granulosus infection of bone</td>
</tr>
<tr>
<td align="left">B90.2</td>
<td align="left">Sequelae of tuberculosis of bones and joints</td>
</tr>
<tr>
<td align="left">M00</td>
<td align="left">Pyogenic arthritis</td>
</tr>
<tr>
<td align="left">M01</td>
<td align="left">Direct infections of joint in infectious and parasitic diseases classified elsewhere</td>
</tr>
<tr>
<td align="left">M46.2</td>
<td align="left">Osteomyelitis of vertebra</td>
</tr>
<tr>
<td align="left">M46.3</td>
<td align="left">Infection of intervertebral disc (pyogenic)</td>
</tr>
<tr>
<td align="left">M46.4</td>
<td align="left">Discitis, unspecified</td>
</tr>
<tr>
<td align="left">M46.5</td>
<td align="left">Other infective spondylopathies</td>
</tr>
<tr>
<td align="left">M49.0</td>
<td align="left">Tuberculosis of spine</td>
</tr>
<tr>
<td align="left">M49.1</td>
<td align="left">Brucella spondylitis</td>
</tr>
<tr>
<td align="left">M49.2</td>
<td align="left">Enterobacterial spondylitis</td>
</tr>
<tr>
<td align="left">M49.3</td>
<td align="left">Spondylopathy in other infectious and parasitic diseases classified elsewhere</td>
</tr>
<tr>
<td align="left">M86</td>
<td align="left">Osteomyelitis</td>
</tr>
<tr>
<td align="left">M90.0</td>
<td align="left">Tuberculosis of bone</td>
</tr>
<tr>
<td align="left">M90.1</td>
<td align="left">Periostitis in other infectious diseases classified elsewhere</td>
</tr>
<tr>
<td align="left">M90.2</td>
<td align="left">Osteopathy in other infectious diseases classified elsewhere</td>
</tr>
</tbody>
</table>
<h2>Infection of liver</h2>
<h4>Implementation</h4>
~~~
At the specified date, a patient is defined as having had Infection of liver IF they meet the criteria for any of the following on or before the specified date. The earliest date on which the individual meets any of the following criteria on or before the specified date is defined as the first event date:
Secondary care
1. ALL diagnoses of Infection of liver or history of diagnosis during a hospitalization
~~~
<h4>Secondary care diagnoses (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//secondary_care/ICD_liver.csv'>ICD_liver.csv</a>)</h4>
<table>
<thead>
<tr>
<th>ICD-10 code</th>
<th>ICD-10 Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left">A06.4</td>
<td align="left">Amoebic liver abscess</td>
</tr>
<tr>
<td align="left">B15</td>
<td align="left">Acute hepatitis A</td>
</tr>
<tr>
<td align="left">B16</td>
<td align="left">Acute hepatitis B</td>
</tr>
<tr>
<td align="left">B17</td>
<td align="left">Other acute viral hepatitis</td>
</tr>
<tr>
<td align="left">B18</td>
<td align="left">Chronic viral hepatitis</td>
</tr>
<tr>
<td align="left">B19</td>
<td align="left">Unspecified viral hepatitis</td>
</tr>
<tr>
<td align="left">B25.1</td>
<td align="left">Cytomegaloviral hepatitis</td>
</tr>
<tr>
<td align="left">B58.1</td>
<td align="left">Toxoplasma hepatitis</td>
</tr>
<tr>
<td align="left">B67.0</td>
<td align="left">Echinococcus granulosus infection of liver</td>
</tr>
<tr>
<td align="left">B67.5</td>
<td align="left">Echinococcus multilocularis infection of liver</td>
</tr>
<tr>
<td align="left">B67.8</td>
<td align="left">Echinococcosis, unspecified, of liver</td>
</tr>
<tr>
<td align="left">B94.2</td>
<td align="left">Sequelae of viral hepatitis</td>
</tr>
<tr>
<td align="left">K75.0</td>
<td align="left">Abscess of liver</td>
</tr>
<tr>
<td align="left">K77.0</td>
<td align="left">Liver disorders in infectious and parasitic diseases classified elsewhere</td>
</tr>
</tbody>
</table>
<h2>Infection of male genital system</h2>
<h4>Implementation</h4>
~~~
At the specified date, a patient is defined as having had Infection of male genital system IF they meet the criteria for any of the following on or before the specified date. The earliest date on which the individual meets any of the following criteria on or before the specified date is defined as the first event date:
Secondary care
1. ALL diagnoses of Infection of male genital system or history of diagnosis during a hospitalization
~~~
<h4>Secondary care diagnoses (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//secondary_care/ICD_male_GU.csv'>ICD_male_GU.csv</a>)</h4>
<table>
<thead>
<tr>
<th>ICD-10 code</th>
<th>ICD-10 Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left">B26.0</td>
<td align="left">Mumps orchitis</td>
</tr>
<tr>
<td align="left">N41.0</td>
<td align="left">Acute prostatitis</td>
</tr>
<tr>
<td align="left">N41.2</td>
<td align="left">Abscess of prostate</td>
</tr>
<tr>
<td align="left">N41.3</td>
<td align="left">Prostatocystitis</td>
</tr>
<tr>
<td align="left">N43.1</td>
<td align="left">Infected hydrocele</td>
</tr>
<tr>
<td align="left">N45</td>
<td align="left">Orchitis and epididymitis</td>
</tr>
<tr>
<td align="left">N48.1</td>
<td align="left">Balanoposthitis</td>
</tr>
</tbody>
</table>
<h2>Infection of other or unspecified genitourinary system</h2>
<h4>Implementation</h4>
~~~
At the specified date, a patient is defined as having had 'Infection of other or unspecified genitourinary system' IF they meet the criteria for any of the following on or before the specified date. The earliest date on which the individual meets any of the following criteria on or before the specified date is defined as the first event date:
Secondary care
1. ALL diagnoses of 'Infection of other or unspecified genitourinary system' or history of diagnosis during a hospitalization
OR
2. ALL possible diagnosis of 'Infection of other or unspecified genitourinary system' during a hospitalization IF NO record satisfying criteria for Urinary Tract Infections, Infection of male genital system or Female pelvic inflammatory disease 30 days before or 30 days after the first event date for 'Infection of other or unspecified genitourinary system'.
~~~
<h4>Secondary care diagnoses (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//secondary_care/ICD_oth_gu.csv'>ICD_oth_gu.csv</a>)</h4>
<table>
<thead>
<tr>
<th>ICD-10 code</th>
<th>ICD-10 Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left">A18.1</td>
<td align="left">Tuberculosis of genitourinary system</td>
</tr>
<tr>
<td align="left">A51.0</td>
<td align="left">Primary genital syphilis</td>
</tr>
<tr>
<td align="left">A54.0</td>
<td align="left">Gonococcal infection of lower genitourinary tract without periurethral or accessory gland abscess</td>
</tr>
<tr>
<td align="left">A54.1</td>
<td align="left">Gonococcal infection of lower genitourinary tract with periurethral and accessory gland abscess</td>
</tr>
<tr>
<td align="left">A54.2</td>
<td align="left">Gonococcal pelviperitonitis and other gonococcal genitourinary infections</td>
</tr>
<tr>
<td align="left">A56.0</td>
<td align="left">Chlamydial infection of lower genitourinary tract</td>
</tr>
<tr>
<td align="left">A56.1</td>
<td align="left">Chlamydial infection of pelviperitoneum and other genitourinary organs</td>
</tr>
<tr>
<td align="left">A56.2</td>
<td align="left">Chlamydial infection of genitourinary tract, unspecified</td>
</tr>
<tr>
<td align="left">A57</td>
<td align="left">Chancroid</td>
</tr>
<tr>
<td align="left">A58</td>
<td align="left">Granuloma inguinale</td>
</tr>
<tr>
<td align="left">A59.0</td>
<td align="left">Urogenital trichomoniasis</td>
</tr>
<tr>
<td align="left">A60.0</td>
<td align="left">Herpesviral infection of genitalia and urogenital tract</td>
</tr>
<tr>
<td align="left">B37.3</td>
<td align="left">Candidiasis of vulva and vagina</td>
</tr>
<tr>
<td align="left">B37.4</td>
<td align="left">Candidiasis of other urogenital sites</td>
</tr>
<tr>
<td align="left">B90.1</td>
<td align="left">Sequelae of genitourinary tuberculosis</td>
</tr>
<tr>
<td align="left">N75.1</td>
<td align="left">Abscess of Bartholin's gland</td>
</tr>
<tr>
<td align="left">N77.0</td>
<td align="left">Ulceration of vulva in infectious and parasitic diseases classified elsewhere</td>
</tr>
<tr>
<td align="left">N77.1</td>
<td align="left">Vaginitis, vulvitis and vulvovaginitis in infectious and parasitic diseases classified elsewhere</td>
</tr>
</tbody>
</table>
<h2>Infection of skin and subcutaneous tissues</h2>
<h4>Implementation</h4>
~~~
At the specified date, a patient is defined as having had Infection of skin and subcutaneous tissues IF they meet the criteria for any of the following on or before the specified date. The earliest date on which the individual meets any of the following criteria on or before the specified date is defined as the first event date:
Secondary care
1. ALL diagnoses of Infection of skin and subcutaneous tissues or history of diagnosis during a hospitalization
~~~
<h4>Secondary care diagnoses (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//secondary_care/ICD_skin.csv'>ICD_skin.csv</a>)</h4>
<table>
<thead>
<tr>
<th>ICD-10 code</th>
<th>ICD-10 Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left">A06.7</td>
<td align="left">Cutaneous amoebiasis</td>
</tr>
<tr>
<td align="left">A18.4</td>
<td align="left">Tuberculosis of skin and subcutaneous tissue</td>
</tr>
<tr>
<td align="left">A20.1</td>
<td align="left">Cellulocutaneous plague</td>
</tr>
<tr>
<td align="left">A21.0</td>
<td align="left">Ulceroglandular tularaemia</td>
</tr>
<tr>
<td align="left">A22.0</td>
<td align="left">Cutaneous anthrax</td>
</tr>
<tr>
<td align="left">A26.0</td>
<td align="left">Cutaneous erysipeloid</td>
</tr>
<tr>
<td align="left">A31.1</td>
<td align="left">Cutaneous mycobacterial infection</td>
</tr>
<tr>
<td align="left">A32.0</td>
<td align="left">Cutaneous listeriosis</td>
</tr>
<tr>
<td align="left">A36.3</td>
<td align="left">Cutaneous diphtheria</td>
</tr>
<tr>
<td align="left">A43.1</td>
<td align="left">Cutaneous nocardiosis</td>
</tr>
<tr>
<td align="left">A46</td>
<td align="left">Erysipelas</td>
</tr>
<tr>
<td align="left">A51.3</td>
<td align="left">Secondary syphilis of skin and mucous membranes</td>
</tr>
<tr>
<td align="left">B00.0</td>
<td align="left">Eczema herpeticum</td>
</tr>
<tr>
<td align="left">B00.1</td>
<td align="left">Herpesviral vesicular dermatitis</td>
</tr>
<tr>
<td align="left">B07</td>
<td align="left">Viral warts</td>
</tr>
<tr>
<td align="left">B08</td>
<td align="left">Other viral infections characterized by skin and mucous membrane lesions, not elsewhere classified</td>
</tr>
<tr>
<td align="left">B09</td>
<td align="left">Unspecified viral infection characterized by skin and mucous membrane lesions</td>
</tr>
<tr>
<td align="left">B35</td>
<td align="left">Dermatophytosis</td>
</tr>
<tr>
<td align="left">B36</td>
<td align="left">Other superficial mycoses</td>
</tr>
<tr>
<td align="left">B37.2</td>
<td align="left">Candidiasis of skin and nail</td>
</tr>
<tr>
<td align="left">B38.3</td>
<td align="left">Cutaneous coccidioidomycosis</td>
</tr>
<tr>
<td align="left">B40.3</td>
<td align="left">Cutaneous blastomycosis</td>
</tr>
<tr>
<td align="left">B42.1</td>
<td align="left">Lymphocutaneous sporotrichosis</td>
</tr>
<tr>
<td align="left">B43.0</td>
<td align="left">Cutaneous chromomycosis</td>
</tr>
<tr>
<td align="left">B43.2</td>
<td align="left">Subcutaneous phaeomycotic abscess and cyst</td>
</tr>
<tr>
<td align="left">B45.2</td>
<td align="left">Cutaneous cryptococcosis</td>
</tr>
<tr>
<td align="left">B46.3</td>
<td align="left">Cutaneous mucormycosis</td>
</tr>
<tr>
<td align="left">B55.1</td>
<td align="left">Cutaneous leishmaniasis</td>
</tr>
<tr>
<td align="left">B78.1</td>
<td align="left">Cutaneous strongyloidiasis</td>
</tr>
<tr>
<td align="left">B85</td>
<td align="left">Pediculosis and phthiriasis</td>
</tr>
<tr>
<td align="left">B86</td>
<td align="left">Scabies</td>
</tr>
<tr>
<td align="left">B87.0</td>
<td align="left">Cutaneous myiasis</td>
</tr>
<tr>
<td align="left">B87.1</td>
<td align="left">Wound myiasis</td>
</tr>
<tr>
<td align="left">B88</td>
<td align="left">Other infestations</td>
</tr>
<tr>
<td align="left">L00</td>
<td align="left">Staphylococcal scalded skin syndrome</td>
</tr>
<tr>
<td align="left">L01</td>
<td align="left">Impetigo</td>
</tr>
<tr>
<td align="left">L02</td>
<td align="left">Cutaneous abscess, furuncle and carbuncle</td>
</tr>
<tr>
<td align="left">L03</td>
<td align="left">Cellulitis</td>
</tr>
<tr>
<td align="left">L05.0</td>
<td align="left">Pilonidal cyst with abscess</td>
</tr>
<tr>
<td align="left">L08</td>
<td align="left">Other local infections of skin and subcutaneous tissue</td>
</tr>
<tr>
<td align="left">L30.3</td>
<td align="left">Infective dermatitis</td>
</tr>
<tr>
<td align="left">P38</td>
<td align="left">Omphalitis of newborn with or without mild haemorrhage</td>
</tr>
<tr>
<td align="left">P39.4</td>
<td align="left">Neonatal skin infection</td>
</tr>
</tbody>
</table>
<h2>Infections of Other or unspecified organs</h2>
<h4>Implementation</h4>
~~~
At the specified date, a patient is defined as having had Infections of Other or unspecified organs IF they meet the criteria for any of the following on or before the specified date. The earliest date on which the individual meets any of the following criteria on or before the specified date is defined as the first event date:
Secondary care
1. ALL diagnoses of Infections of Other or unspecified organs or history of diagnosis during a hospitalization
OR
2. ALL possible diagnosis of Infections of Other or unspecified organs during a hospitalization IF NO record satisfying criteria for the following conditions 30 days before or 30 days after the first event date for Infections of Other or unspecified organs:
a) Infections of the digestive system
b) Infection of anal and rectal regions
c) Septicaemia
d) Meningitis
e) Encephalitis
f) Other nervous system infections
g) Eye infections
h) Ear and Upper Respiratory Tract Infections
i) Lower Respiratory Tract Infections
j) Infections of the Heart
k) Infection of skin and subcutaneous tissues
l) Infection of liver
m) Infection of bones and joints
n) Urinary Tract Infections
o) Infection of male genital system
p) Female Pelvic Inflammatory Disease
q) Infection of other or unspecified genitourinary system
~~~
<h4>Secondary care diagnoses (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//secondary_care/ICD_oth_organs.csv'>ICD_oth_organs.csv</a>)</h4>
<table>
<thead>
<tr>
<th>ICD-10 code</th>
<th>ICD-10 Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left">A02.2</td>
<td align="left">Localized salmonella infections</td>
</tr>
<tr>
<td align="left">A02.8</td>
<td align="left">Other specified salmonella infections</td>
</tr>
<tr>
<td align="left">A02.9</td>
<td align="left">Salmonella infection, unspecified</td>
</tr>
<tr>
<td align="left">A06.8</td>
<td align="left">Amoebic infection of other sites</td>
</tr>
<tr>
<td align="left">A06.9</td>
<td align="left">Amoebiasis, unspecified</td>
</tr>
<tr>
<td align="left">A18.7</td>
<td align="left">Tuberculosis of adrenal glands</td>
</tr>
<tr>
<td align="left">A18.8</td>
<td align="left">Tuberculosis of other specified organs</td>
</tr>
<tr>
<td align="left">A19</td>
<td align="left">Miliary tuberculosis</td>
</tr>
<tr>
<td align="left">A20.8</td>
<td align="left">Other forms of plague</td>
</tr>
<tr>
<td align="left">A20.9</td>
<td align="left">Plague, unspecified</td>
</tr>
<tr>
<td align="left">A21.7</td>
<td align="left">Generalised tularaemia</td>
</tr>
<tr>
<td align="left">A21.8</td>
<td align="left">Other forms of tularaemia</td>
</tr>
<tr>
<td align="left">A21.9</td>
<td align="left">Tularaemia, unspecified</td>
</tr>
<tr>
<td align="left">A22.8</td>
<td align="left">Other forms of anthrax</td>
</tr>
<tr>
<td align="left">A22.9</td>
<td align="left">Anthrax, unspecified</td>
</tr>
<tr>
<td align="left">A23</td>
<td align="left">Brucellosis</td>
</tr>
<tr>
<td align="left">A24</td>
<td align="left">Glanders and melioidosis</td>
</tr>
<tr>
<td align="left">A25</td>
<td align="left">Rat-bite fevers</td>
</tr>
<tr>
<td align="left">A26.8</td>
<td align="left">Other forms of erysipeloid</td>
</tr>
<tr>
<td align="left">A26.9</td>
<td align="left">Erysipeloid, unspecified</td>
</tr>
<tr>
<td align="left">A27</td>
<td align="left">Leptospirosis</td>
</tr>
<tr>
<td align="left">A28</td>
<td align="left">Other zoonotic bacterial diseases, not elsewhere classified</td>
</tr>
<tr>
<td align="left">A30</td>
<td align="left">Leprosy [Hansen's disease]</td>
</tr>
<tr>
<td align="left">A31.8</td>
<td align="left">Other mycobacterial infections</td>
</tr>
<tr>
<td align="left">A31.9</td>
<td align="left">Mycobacterial infection, unspecified</td>
</tr>
<tr>
<td align="left">A32.8</td>
<td align="left">Other forms of listeriosis</td>
</tr>
<tr>
<td align="left">A32.9</td>
<td align="left">Listeriosis, unspecified</td>
</tr>
<tr>
<td align="left">A35</td>
<td align="left">Other tetanus</td>
</tr>
<tr>
<td align="left">A36.8</td>
<td align="left">Other diphtheria</td>
</tr>
<tr>
<td align="left">A36.9</td>
<td align="left">Diphtheria, unspecified</td>
</tr>
<tr>
<td align="left">A38</td>
<td align="left">Scarlet fever</td>
</tr>
<tr>
<td align="left">A39.8</td>
<td align="left">Other meningococcal infections</td>
</tr>
<tr>
<td align="left">A39.9</td>
<td align="left">Meningococcal infection, unspecified</td>
</tr>
<tr>
<td align="left">A42.1</td>
<td align="left">Abdominal actinomycosis</td>
</tr>
<tr>
<td align="left">A42.2</td>
<td align="left">Cervicofacial actinomycosis</td>
</tr>
<tr>
<td align="left">A42.8</td>
<td align="left">Other forms of actinomycosis</td>
</tr>
<tr>
<td align="left">A42.9</td>
<td align="left">Actinomycosis, unspecified</td>
</tr>
<tr>
<td align="left">A43.8</td>
<td align="left">Other forms of nocardiosis</td>
</tr>
<tr>
<td align="left">A43.9</td>
<td align="left">Nocardiosis, unspecified</td>
</tr>
<tr>
<td align="left">A44</td>
<td align="left">Bartonellosis</td>
</tr>
<tr>
<td align="left">A48</td>
<td align="left">Other bacterial diseases, not elsewhere classified</td>
</tr>
<tr>
<td align="left">A49</td>
<td align="left">Bacterial infection of unspecified site</td>
</tr>
<tr>
<td align="left">A50</td>
<td align="left">Congenital syphilis</td>
</tr>
<tr>
<td align="left">A51.2</td>
<td align="left">Primary syphilis of other sites</td>
</tr>
<tr>
<td align="left">A51.4</td>
<td align="left">Other secondary syphilis</td>
</tr>
<tr>
<td align="left">A51.5</td>
<td align="left">Early syphilis, latent</td>
</tr>
<tr>
<td align="left">A51.9</td>
<td align="left">Early syphilis, unspecified</td>
</tr>
<tr>
<td align="left">A52.7</td>
<td align="left">Other symptomatic late syphilis</td>
</tr>
<tr>
<td align="left">A52.8</td>
<td align="left">Late syphilis, latent</td>
</tr>
<tr>
<td align="left">A52.9</td>
<td align="left">Late syphilis, unspecified</td>
</tr>
<tr>
<td align="left">A53</td>
<td align="left">Other and unspecified syphilis</td>
</tr>
<tr>
<td align="left">A54.8</td>
<td align="left">Other gonococcal infections</td>
</tr>
<tr>
<td align="left">A54.9</td>
<td align="left">Gonococcal infection, unspecified</td>
</tr>
<tr>
<td align="left">A56.8</td>
<td align="left">Sexually transmitted chlamydial infection of other sites</td>
</tr>
<tr>
<td align="left">A59.8</td>
<td align="left">Trichomoniasis of other sites</td>
</tr>
<tr>
<td align="left">A59.9</td>
<td align="left">Trichomoniasis, unspecified</td>
</tr>
<tr>
<td align="left">A63.8</td>
<td align="left">Other specified predominantly sexually transmitted diseases</td>
</tr>
<tr>
<td align="left">A64</td>
<td align="left">Unspecified sexually transmitted disease</td>
</tr>
<tr>
<td align="left">A65</td>
<td align="left">Nonvenereal syphilis</td>
</tr>
<tr>
<td align="left">A66</td>
<td align="left">Yaws</td>
</tr>
<tr>
<td align="left">A67</td>
<td align="left">Pinta [carate]</td>
</tr>
<tr>
<td align="left">A68</td>
<td align="left">Relapsing fevers</td>
</tr>
<tr>
<td align="left">A69</td>
<td align="left">Other spirochaetal infections</td>
</tr>
<tr>
<td align="left">A70</td>
<td align="left">Chlamydia psittaci infection</td>
</tr>
<tr>
<td align="left">A74.8</td>
<td align="left">Other chlamydial diseases</td>
</tr>
<tr>
<td align="left">A74.9</td>
<td align="left">Chlamydial infection, unspecified</td>
</tr>
<tr>
<td align="left">A75</td>
<td align="left">Typhus fever</td>
</tr>
<tr>
<td align="left">A77</td>
<td align="left">Spotted fever [tick-borne rickettsioses]</td>
</tr>
<tr>
<td align="left">A78</td>
<td align="left">Q fever</td>
</tr>
<tr>
<td align="left">A79</td>
<td align="left">Other rickettsioses</td>
</tr>
<tr>
<td align="left">A90</td>
<td align="left">Dengue fever [classical dengue]</td>
</tr>
<tr>
<td align="left">A91</td>
<td align="left">Dengue haemorrhagic fever</td>
</tr>
<tr>
<td align="left">A92</td>
<td align="left">Other mosquito-borne viral fevers</td>
</tr>
<tr>
<td align="left">A93</td>
<td align="left">Other arthropod-borne viral fevers, not elsewhere classified</td>
</tr>
<tr>
<td align="left">A94</td>
<td align="left">Unspecified arthropod-borne viral fever</td>
</tr>
<tr>
<td align="left">A95</td>
<td align="left">Yellow fever</td>
</tr>
<tr>
<td align="left">A96</td>
<td align="left">Arenaviral haemorrhagic fever</td>
</tr>
<tr>
<td align="left">A98</td>
<td align="left">Other viral haemorrhagic fevers, not elsewhere classified</td>
</tr>
<tr>
<td align="left">A99</td>
<td align="left">Unspecified viral haemorrhagic fever</td>
</tr>
<tr>
<td align="left">B00.2</td>
<td align="left">Herpesviral gingivostomatitis and pharyngotonsillitis</td>
</tr>
<tr>
<td align="left">B00.7</td>
<td align="left">Disseminated herpesviral disease</td>
</tr>
<tr>
<td align="left">B00.8</td>
<td align="left">Other forms of herpesviral infection</td>
</tr>
<tr>
<td align="left">B00.9</td>
<td align="left">Herpesviral infection, unspecified</td>
</tr>
<tr>
<td align="left">B01.8</td>
<td align="left">Varicella with other complications</td>
</tr>
<tr>
<td align="left">B01.9</td>
<td align="left">Varicella without complication</td>
</tr>
<tr>
<td align="left">B02.7</td>
<td align="left">Disseminated zoster</td>
</tr>
<tr>
<td align="left">B02.8</td>
<td align="left">Zoster with other complications</td>
</tr>
<tr>
<td align="left">B02.9</td>
<td align="left">Zoster without complication</td>
</tr>
<tr>
<td align="left">B05.8</td>
<td align="left">Measles with other complications</td>
</tr>
<tr>
<td align="left">B05.9</td>
<td align="left">Measles without complication</td>
</tr>
<tr>
<td align="left">B06.8</td>
<td align="left">Rubella with other complications</td>
</tr>
<tr>
<td align="left">B06.9</td>
<td align="left">Rubella without complication</td>
</tr>
<tr>
<td align="left">B20</td>
<td align="left">Human immunodeficiency virus [HIV] disease resulting in infectious and parasitic diseases</td>
</tr>
<tr>
<td align="left">B21</td>
<td align="left">Human immunodeficiency virus [HIV] disease resulting in malignant neoplasms</td>
</tr>
<tr>
<td align="left">B22</td>
<td align="left">Human immunodeficiency virus [HIV] disease resulting in other specified diseases</td>
</tr>
<tr>
<td align="left">B23</td>
<td align="left">Human immunodeficiency virus [HIV] disease resulting in other conditions</td>
</tr>
<tr>
<td align="left">B24</td>
<td align="left">Unspecified human immunodeficiency virus [HIV] disease</td>
</tr>
<tr>
<td align="left">B25.2</td>
<td align="left">Cytomegaloviral pancreatitis</td>
</tr>
<tr>
<td align="left">B25.8</td>
<td align="left">Other cytomegaloviral diseases</td>
</tr>
<tr>
<td align="left">B25.9</td>
<td align="left">Cytomegaloviral disease, unspecified</td>
</tr>
<tr>
<td align="left">B26.8</td>
<td align="left">Mumps with other complications</td>
</tr>
<tr>
<td align="left">B26.9</td>
<td align="left">Mumps without complication</td>
</tr>
<tr>
<td align="left">B33.0</td>
<td align="left">Epidemic myalgia</td>
</tr>
<tr>
<td align="left">B33.1</td>
<td align="left">Ross River disease</td>
</tr>
<tr>
<td align="left">B33.3</td>
<td align="left">Retrovirus infections, not elsewhere classified</td>
</tr>
<tr>
<td align="left">B33.4</td>
<td align="left">Hantavirus (cardio-)pulmonary syndrome</td>
</tr>
<tr>
<td align="left">B33.8</td>
<td align="left">Other specified viral diseases</td>
</tr>
<tr>
<td align="left">B34</td>
<td align="left">Viral infection of unspecified site</td>
</tr>
<tr>
<td align="left">B37.0</td>
<td align="left">Candidal stomatitis</td>
</tr>
<tr>
<td align="left">B37.8</td>
<td align="left">Candidiasis of other sites</td>
</tr>
<tr>
<td align="left">B37.9</td>
<td align="left">Candidiasis, unspecified</td>
</tr>
<tr>
<td align="left">B38.7</td>
<td align="left">Disseminated coccidioidomycosis</td>
</tr>
<tr>
<td align="left">B38.8</td>
<td align="left">Other forms of coccidioidomycosis</td>
</tr>
<tr>
<td align="left">B38.9</td>
<td align="left">Coccidioidomycosis, unspecified</td>
</tr>
<tr>
<td align="left">B39.3</td>
<td align="left">Disseminated histoplasmosis capsulati</td>
</tr>
<tr>
<td align="left">B39.4</td>
<td align="left">Histoplasmosis capsulati, unspecified</td>
</tr>
<tr>
<td align="left">B39.5</td>
<td align="left">Histoplasmosis duboisii</td>
</tr>
<tr>
<td align="left">B39.9</td>
<td align="left">Histoplasmosis, unspecified</td>
</tr>
<tr>
<td align="left">B40.7</td>
<td align="left">Disseminated blastomycosis</td>
</tr>
<tr>
<td align="left">B40.8</td>
<td align="left">Other forms of blastomycosis</td>
</tr>
<tr>
<td align="left">B40.9</td>
<td align="left">Blastomycosis, unspecified</td>
</tr>
<tr>
<td align="left">B41.7</td>
<td align="left">Disseminated paracoccidioidomycosis</td>
</tr>
<tr>
<td align="left">B41.8</td>
<td align="left">Other forms of paracoccidioidomycosis</td>
</tr>
<tr>
<td align="left">B41.9</td>
<td align="left">Paracoccidioidomycosis, unspecified</td>
</tr>
<tr>
<td align="left">B42.7</td>
<td align="left">Disseminated sporotrichosis</td>
</tr>
<tr>
<td align="left">B42.8</td>
<td align="left">Other forms of sporotrichosis</td>
</tr>
<tr>
<td align="left">B42.9</td>
<td align="left">Sporotrichosis, unspecified</td>
</tr>
<tr>
<td align="left">B43.8</td>
<td align="left">Other forms of chromomycosis</td>
</tr>
<tr>
<td align="left">B43.9</td>
<td align="left">Chromomycosis, unspecified</td>
</tr>
<tr>
<td align="left">B44.7</td>
<td align="left">Disseminated aspergillosis</td>
</tr>
<tr>
<td align="left">B44.8</td>
<td align="left">Other forms of aspergillosis</td>
</tr>
<tr>
<td align="left">B44.9</td>
<td align="left">Aspergillosis, unspecified</td>
</tr>
<tr>
<td align="left">B45.7</td>
<td align="left">Disseminated cryptococcosis</td>
</tr>
<tr>
<td align="left">B45.8</td>
<td align="left">Other forms of cryptococcosis</td>
</tr>
<tr>
<td align="left">B45.9</td>
<td align="left">Cryptococcosis, unspecified</td>
</tr>
<tr>
<td align="left">B46.1</td>
<td align="left">Rhinocerebral mucormycosis</td>
</tr>
<tr>
<td align="left">B46.4</td>
<td align="left">Disseminated mucormycosis</td>
</tr>
<tr>
<td align="left">B46.5</td>
<td align="left">Mucormycosis, unspecified</td>
</tr>
<tr>
<td align="left">B46.8</td>
<td align="left">Other zygomycoses</td>
</tr>
<tr>
<td align="left">B46.9</td>
<td align="left">Zygomycosis, unspecified</td>
</tr>
<tr>
<td align="left">B47.0</td>
<td align="left">Eumycetoma</td>
</tr>
<tr>
<td align="left">B47.1</td>
<td align="left">Actinomycetoma</td>
</tr>
<tr>
<td align="left">B47.9</td>
<td align="left">Mycetoma, unspecified</td>
</tr>
<tr>
<td align="left">B48</td>
<td align="left">Other mycoses, not elsewhere classified</td>
</tr>
<tr>
<td align="left">B49</td>
<td align="left">Unspecified mycosis</td>
</tr>
<tr>
<td align="left">B50.8</td>
<td align="left">Other severe and complicated Plasmodium falciparum malaria</td>
</tr>
<tr>
<td align="left">B50.9</td>
<td align="left">Plasmodium falciparum malaria, unspecified</td>
</tr>
<tr>
<td align="left">B51</td>
<td align="left">Plasmodium vivax malaria</td>
</tr>
<tr>
<td align="left">B52</td>
<td align="left">Plasmodium malariae malaria</td>
</tr>
<tr>
<td align="left">B53</td>
<td align="left">Other parasitologically confirmed malaria</td>
</tr>
<tr>
<td align="left">B54</td>
<td align="left">Unspecified malaria</td>
</tr>
<tr>
<td align="left">B55.0</td>
<td align="left">Visceral leishmaniasis</td>
</tr>
<tr>
<td align="left">B55.2</td>
<td align="left">Mucocutaneous leishmaniasis</td>
</tr>
<tr>
<td align="left">B55.9</td>
<td align="left">Leishmaniasis, unspecified</td>
</tr>
<tr>
<td align="left">B57</td>
<td align="left">Chagas' disease</td>
</tr>
<tr>
<td align="left">B58.8</td>
<td align="left">Toxoplasmosis with other organ involvement</td>
</tr>
<tr>
<td align="left">B58.9</td>
<td align="left">Toxoplasmosis, unspecified</td>
</tr>
<tr>
<td align="left">B60</td>
<td align="left">Other protozoal diseases, not elsewhere classified</td>
</tr>
<tr>
<td align="left">B64</td>
<td align="left">Unspecified protozoal disease</td>
</tr>
<tr>
<td align="left">B65</td>
<td align="left">Schistosomiasis [bilharziasis]</td>
</tr>
<tr>
<td align="left">B66</td>
<td align="left">Other fluke infections</td>
</tr>
<tr>
<td align="left">B67.3</td>
<td align="left">Echinococcus granulosus infection, other and multiple sites</td>
</tr>
<tr>
<td align="left">B67.4</td>
<td align="left">Echinococcus granulosus infection, unspecified</td>
</tr>
<tr>
<td align="left">B67.6</td>
<td align="left">Echinococcus multilocularis infection, other and multiple sites</td>
</tr>
<tr>
<td align="left">B67.7</td>
<td align="left">Echinococcus multilocularis infection, unspecified</td>
</tr>
<tr>
<td align="left">B67.9</td>
<td align="left">Echinococcosis, other and unspecified</td>
</tr>
<tr>
<td align="left">B68</td>
<td align="left">Taeniasis</td>
</tr>
<tr>
<td align="left">B69.8</td>
<td align="left">Cysticercosis of other sites</td>
</tr>
<tr>
<td align="left">B69.9</td>
<td align="left">Cysticercosis, unspecified</td>
</tr>
<tr>
<td align="left">B70</td>
<td align="left">Diphyllobothriasis and sparganosis</td>
</tr>
<tr>
<td align="left">B71</td>
<td align="left">Other cestode infections</td>
</tr>
<tr>
<td align="left">B72</td>
<td align="left">Dracunculiasis</td>
</tr>
<tr>
<td align="left">B73</td>
<td align="left">Onchocerciasis</td>
</tr>
<tr>
<td align="left">B74</td>
<td align="left">Filariasis</td>
</tr>
<tr>
<td align="left">B75</td>
<td align="left">Trichinellosis</td>
</tr>
<tr>
<td align="left">B76</td>
<td align="left">Hookworm diseases</td>
</tr>
<tr>
<td align="left">B77</td>
<td align="left">Ascariasis</td>
</tr>
<tr>
<td align="left">B78.7</td>
<td align="left">Disseminated strongyloidiasis</td>
</tr>
<tr>
<td align="left">B78.9</td>
<td align="left">Strongyloidiasis, unspecified</td>
</tr>
<tr>
<td align="left">B79</td>
<td align="left">Trichuriasis</td>
</tr>
<tr>
<td align="left">B80</td>
<td align="left">Enterobiasis</td>
</tr>
<tr>
<td align="left">B83</td>
<td align="left">Other helminthiases</td>
</tr>
<tr>
<td align="left">B87.8</td>
<td align="left">Myiasis of other sites</td>
</tr>
<tr>
<td align="left">B87.9</td>
<td align="left">Myiasis, unspecified</td>
</tr>
<tr>
<td align="left">B89</td>
<td align="left">Unspecified parasitic disease</td>
</tr>
<tr>
<td align="left">B90.8</td>
<td align="left">Sequelae of tuberculosis of other organs</td>
</tr>
<tr>
<td align="left">B90.9</td>
<td align="left">Sequelae of respiratory and unspecified tuberculosis</td>
</tr>
<tr>
<td align="left">B92</td>
<td align="left">Sequelae of leprosy</td>
</tr>
<tr>
<td align="left">B94.8</td>
<td align="left">Sequelae of other specified infectious and parasitic diseases</td>
</tr>
<tr>
<td align="left">B94.9</td>
<td align="left">Sequelae of unspecified infectious or parasitic disease</td>
</tr>
<tr>
<td align="left">B95</td>
<td align="left">Streptococcus and staphylococcus as the cause of diseases classified to other chapters</td>
</tr>
<tr>
<td align="left">B96</td>
<td align="left">Other specified bacterial agents as the cause of diseases classified to other chapters</td>
</tr>
<tr>
<td align="left">B97</td>
<td align="left">Viral agents as the cause of diseases classified to other chapters</td>
</tr>
<tr>
<td align="left">B98.1</td>
<td align="left">Vibrio vulnificus as the cause of diseases classified to other chapters</td>
</tr>
<tr>
<td align="left">B99</td>
<td align="left">Other and unspecified infectious diseases</td>
</tr>
<tr>
<td align="left">G04.1</td>
<td align="left">Tropical spastic paraplegia</td>
</tr>
<tr>
<td align="left">G53.0</td>
<td align="left">Postzoster neuralgia</td>
</tr>
<tr>
<td align="left">G53.1</td>
<td align="left">Multiple cranial nerve palsies in infectious and parasitic diseases classified elsewhere</td>
</tr>
<tr>
<td align="left">G63.0</td>
<td align="left">Polyneuropathy in infectious and parasitic diseases classified elsewhere</td>
</tr>
<tr>
<td align="left">G94.0</td>
<td align="left">Hydrocephalus in infectious and parasitic diseases classified elsewhere</td>
</tr>
<tr>
<td align="left">J09</td>
<td align="left">Influenza due to identified avian influenza virus</td>
</tr>
<tr>
<td align="left">J10.1</td>
<td align="left">Influenza with other respiratory manifestations, other influenza virus identified</td>
</tr>
<tr>
<td align="left">J10.8</td>
<td align="left">Influenza with other manifestations, other influenza virus identified</td>
</tr>
<tr>
<td align="left">J11.1</td>
<td align="left">Influenza with other respiratory manifestations, virus not identified</td>
</tr>
<tr>
<td align="left">J11.8</td>
<td align="left">Influenza with other manifestations, virus not identified</td>
</tr>
<tr>
<td align="left">J37</td>
<td align="left">Chronic laryngitis and laryngotracheitis</td>
</tr>
<tr>
<td align="left">J85.3</td>
<td align="left">Abscess of mediastinum</td>
</tr>
<tr>
<td align="left">M60.0</td>
<td align="left">Infective myositis</td>
</tr>
<tr>
<td align="left">M63.0</td>
<td align="left">Myositis in bacterial diseases classified elsewhere</td>
</tr>
<tr>
<td align="left">M63.2</td>
<td align="left">Myositis in other infectious diseases classified elsewhere</td>
</tr>
<tr>
<td align="left">M65.0</td>
<td align="left">Abscess of tendon sheath</td>
</tr>
<tr>
<td align="left">M65.1</td>
<td align="left">Other infective (teno)synovitis</td>
</tr>
<tr>
<td align="left">M68.0</td>
<td align="left">Synovitis and tenosynovitis in bacterial diseases classified elsewhere</td>
</tr>
<tr>
<td align="left">M71.0</td>
<td align="left">Abscess of bursa</td>
</tr>
<tr>
<td align="left">M71.1</td>
<td align="left">Other infective bursitis</td>
</tr>
<tr>
<td align="left">M72.6</td>
<td align="left">Necrotizing fasciitis</td>
</tr>
<tr>
<td align="left">M73.1</td>
<td align="left">Syphilitic bursitis</td>
</tr>
<tr>
<td align="left">P35</td>
<td align="left">Congenital viral diseases</td>
</tr>
<tr>
<td align="left">P37</td>
<td align="left">Other congenital infectious and parasitic diseases</td>
</tr>
<tr>
<td align="left">P39.0</td>
<td align="left">Neonatal infective mastitis</td>
</tr>
<tr>
<td align="left">P39.2</td>
<td align="left">Intra-amniotic infection of fetus, not elsewhere classified</td>
</tr>
<tr>
<td align="left">P39.8</td>
<td align="left">Other specified infections specific to the perinatal period</td>
</tr>
<tr>
<td align="left">P39.9</td>
<td align="left">Infection specific to the perinatal period, unspecified</td>
</tr>
</tbody>
</table>
<h2>Infections of the Heart</h2>
<h4>Implementation</h4>
~~~
At the specified date, a patient is defined as having had Infections of the Heart IF they meet the criteria for any of the following on or before the specified date. The earliest date on which the individual meets any of the following criteria on or before the specified date is defined as the first event date:
Secondary care
1. ALL diagnoses of Infections of the Heart or history of diagnosis during a hospitalization
~~~
<h4>Secondary care diagnoses (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//secondary_care/ICD_heart.csv'>ICD_heart.csv</a>)</h4>
<table>
<thead>
<tr>
<th>ICD-10 code</th>
<th>ICD-10 Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left">A39.5</td>
<td align="left">Meningococcal heart disease</td>
</tr>
<tr>
<td align="left">A52.0</td>
<td align="left">Cardiovascular syphilis</td>
</tr>
<tr>
<td align="left">B33.2</td>
<td align="left">Viral carditis</td>
</tr>
<tr>
<td align="left">B37.6</td>
<td align="left">Candidal endocarditis</td>
</tr>
<tr>
<td align="left">I30.1</td>
<td align="left">Infective pericarditis</td>
</tr>
<tr>
<td align="left">I32.0</td>
<td align="left">Pericarditis in bacterial diseases classified elsewhere</td>
</tr>
<tr>
<td align="left">I32.1</td>
<td align="left">Pericarditis in other infectious and parasitic diseases classified elsewhere</td>
</tr>
<tr>
<td align="left">I33.0</td>
<td align="left">Acute and subacute infective endocarditis</td>
</tr>
<tr>
<td align="left">I40.0</td>
<td align="left">Infective myocarditis</td>
</tr>
<tr>
<td align="left">I41.0</td>
<td align="left">Myocarditis in bacterial diseases classified elsewhere</td>
</tr>
<tr>
<td align="left">I41.1</td>
<td align="left">Myocarditis in viral diseases classified elsewhere</td>
</tr>
<tr>
<td align="left">I41.2</td>
<td align="left">Myocarditis in other infectious and parasitic diseases classified elsewhere</td>
</tr>
<tr>
<td align="left">I43.0</td>
<td align="left">Cardiomyopathy in infectious and parasitic diseases classified elsewhere</td>
</tr>
<tr>
<td align="left">I98.0</td>
<td align="left">Cardiovascular syphilis</td>
</tr>
<tr>
<td align="left">I98.1</td>
<td align="left">Cardiovascular disorders in other infectious and parasitic diseases classified elsewhere</td>
</tr>
</tbody>
</table>
<h2>Infections of the digestive system</h2>
<h4>Implementation</h4>
~~~
At the specified date, a patient is defined as having had Infections of the digestive system IF they meet the criteria for any of the following on or before the specified date. The earliest date on which the individual meets any of the following criteria on or before the specified date is defined as the first event date:
Secondary care
1. ALL diagnoses of Infections of the digestive system or history of diagnosis during a hospitalization
~~~
<h4>Secondary care diagnoses (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//secondary_care/ICD_digestive.csv'>ICD_digestive.csv</a>)</h4>
<table>
<thead>
<tr>
<th>ICD-10 code</th>
<th>ICD-10 Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left">A00</td>
<td align="left">Cholera</td>
</tr>
<tr>
<td align="left">A01</td>
<td align="left">Typhoid and paratyphoid fevers</td>
</tr>
<tr>
<td align="left">A02.0</td>
<td align="left">Salmonella enteritis</td>
</tr>
<tr>
<td align="left">A03</td>
<td align="left">Shigellosis</td>
</tr>
<tr>
<td align="left">A04</td>
<td align="left">Other bacterial intestinal infections</td>
</tr>
<tr>
<td align="left">A05</td>
<td align="left">Other bacterial foodborne intoxications, not elsewhere classified</td>
</tr>
<tr>
<td align="left">A06.0</td>
<td align="left">Acute amoebic dysentery</td>
</tr>
<tr>
<td align="left">A06.1</td>
<td align="left">Chronic intestinal amoebiasis</td>
</tr>
<tr>
<td align="left">A06.2</td>
<td align="left">Amoebic nondysenteric colitis</td>
</tr>
<tr>
<td align="left">A06.3</td>
<td align="left">Amoeboma of intestine</td>
</tr>
<tr>
<td align="left">A07</td>
<td align="left">Other protozoal intestinal diseases</td>
</tr>
<tr>
<td align="left">A08</td>
<td align="left">Viral and other specified intestinal infections</td>
</tr>
<tr>
<td align="left">A09</td>
<td align="left">Other gastroenteritis and colitis of infectious and unspecified origin</td>
</tr>
<tr>
<td align="left">A18.3</td>
<td align="left">Tuberculosis of intestines, peritoneum and mesenteric glands</td>
</tr>
<tr>
<td align="left">A21.3</td>
<td align="left">Gastrointestinal tularaemia</td>
</tr>
<tr>
<td align="left">A22.2</td>
<td align="left">Gastrointestinal anthrax</td>
</tr>
<tr>
<td align="left">B05.4</td>
<td align="left">Measles with intestinal complications</td>
</tr>
<tr>
<td align="left">B46.2</td>
<td align="left">Gastrointestinal mucormycosis</td>
</tr>
<tr>
<td align="left">B78.0</td>
<td align="left">Intestinal strongyloidiasis</td>
</tr>
<tr>
<td align="left">B81</td>
<td align="left">Other intestinal helminthiases, not elsewhere classified</td>
</tr>
<tr>
<td align="left">B82</td>
<td align="left">Unspecified intestinal parasitism</td>
</tr>
<tr>
<td align="left">B98.0</td>
<td align="left">Helicobacter pylori [H.pylori] as the cause of diseases classified to other chapters</td>
</tr>
<tr>
<td align="left">K23.0</td>
<td align="left">Tuberculous oesophagitis</td>
</tr>
<tr>
<td align="left">K23.1</td>
<td align="left">Megaoesophagus in Chagas' disease</td>
</tr>
<tr>
<td align="left">K63.0</td>
<td align="left">Abscess of intestine</td>
</tr>
<tr>
<td align="left">K93.0</td>
<td align="left">Tuberculous disorders of intestines, peritoneum and mesenteric glands</td>
</tr>
</tbody>
</table>
<h2>Intellectual disability</h2>
<h4>Implementation</h4>
~~~
At the specified date, a patient is defined as having had 'Intellectual disability' IF they meet the criteria for any of the following on or before the specified date. The earliest date on which the individual meets any of the following criteria on or before the specified date is defined as the first event date:
Primary care
1. 'Intellectual disability' diagnosis or history of diagnosis during a consultation
OR
Secondary care
1. ALL diagnoses of 'Intellectual disability' or history of diagnosis during a hospitalization
~~~
<h4>Primary care (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//primary_care/CPRD_intell_dz.csv'>CPRD_intell_dz.csv</a>)</h4>
<table>
<thead>
<tr>
<th>Read code</th>
<th>Read Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left">918e.00</td>
<td align="left">On learning disability register</td>
</tr>
<tr>
<td align="left">94Z9.00</td>
<td align="left">Preferred place of death: learning disability unit</td>
</tr>
<tr>
<td align="left">9HB0.00</td>
<td align="left">Learning disabilities health action plan declined</td>
</tr>
<tr>
<td align="left">9HB1.00</td>
<td align="left">Learning disabilities health action plan offered</td>
</tr>
<tr>
<td align="left">9HB2.00</td>
<td align="left">Learning disabilities health action plan reviewed</td>
</tr>
<tr>
<td align="left">9HB3.00</td>
<td align="left">Learning disabilities health assessment</td>
</tr>
<tr>
<td align="left">9HB4.00</td>
<td align="left">Learning disabilities health action plan completed</td>
</tr>
<tr>
<td align="left">9HB5.00</td>
<td align="left">Learning disabilities annual health assessment</td>
</tr>
<tr>
<td align="left">9HB6.00</td>
<td align="left">Learning disabilities annual health assessment declined</td>
</tr>
<tr>
<td align="left">9HB6.11</td>
<td align="left">Learning disabilities annual health check declined</td>
</tr>
<tr>
<td align="left">9HB7.00</td>
<td align="left">Did not attend learning disabilities annual health assessmnt</td>
</tr>
<tr>
<td align="left">9HB7.11</td>
<td align="left">Did not attend learning disabilities annual health check</td>
</tr>
<tr>
<td align="left">9HB..00</td>
<td align="left">Learning disabilities administration status</td>
</tr>
<tr>
<td align="left">9mA0.00</td>
<td align="left">Learning disability annual health check verbal invitation</td>
</tr>
<tr>
<td align="left">9mA1.00</td>
<td align="left">Learning disability annual health check telephone invitation</td>
</tr>
<tr>
<td align="left">9mA2000</td>
<td align="left">Learning disability annual health check invtation 1st letter</td>
</tr>
<tr>
<td align="left">9mA2100</td>
<td align="left">Learning disability annual health check invtation 2nd letter</td>
</tr>
<tr>
<td align="left">9mA2200</td>
<td align="left">Learning disability annual health check invtation 3rd letter</td>
</tr>
<tr>
<td align="left">9mA2.00</td>
<td align="left">Learning disability annual health check letter invitation</td>
</tr>
<tr>
<td align="left">9mA..00</td>
<td align="left">Learning disability annual health check invitation</td>
</tr>
<tr>
<td align="left">E2F2.00</td>
<td align="left">Other specific learning difficulty</td>
</tr>
<tr>
<td align="left">E30..00</td>
<td align="left">Mild mental retardation, IQ in range 50-70</td>
</tr>
<tr>
<td align="left">E30..11</td>
<td align="left">Educationally subnormal</td>
</tr>
<tr>
<td align="left">E30..12</td>
<td align="left">Feeble-minded</td>
</tr>
<tr>
<td align="left">E30..13</td>
<td align="left">Moron</td>
</tr>
<tr>
<td align="left">E310.00</td>
<td align="left">Moderate mental retardation, IQ in range 35-49</td>
</tr>
<tr>
<td align="left">E310.11</td>
<td align="left">Imbecile</td>
</tr>
<tr>
<td align="left">E311.00</td>
<td align="left">Severe mental retardation, IQ in range 20-34</td>
</tr>
<tr>
<td align="left">E312.00</td>
<td align="left">Profound mental retardation with IQ less than 20</td>
</tr>
<tr>
<td align="left">E312.11</td>
<td align="left">Idiocy</td>
</tr>
<tr>
<td align="left">E31..00</td>
<td align="left">Other specified mental retardation</td>
</tr>
<tr>
<td align="left">E31z.00</td>
<td align="left">Other specified mental retardation NOS</td>
</tr>
<tr>
<td align="left">E3...00</td>
<td align="left">Mental retardation</td>
</tr>
<tr>
<td align="left">E3y..00</td>
<td align="left">Other specified mental retardation</td>
</tr>
<tr>
<td align="left">E3z..00</td>
<td align="left">Mental retardation NOS</td>
</tr>
<tr>
<td align="left">Eu70000</td>
<td align="left">[X]Mld mental retard with statement no or min impairm behav</td>
</tr>
<tr>
<td align="left">Eu70100</td>
<td align="left">[X]Mld mental retard sig impairment behav req attent/treatmt</td>
</tr>
<tr>
<td align="left">Eu70.00</td>
<td align="left">[X]Mild mental retardation</td>
</tr>
<tr>
<td align="left">Eu70.12</td>
<td align="left">[X]Mild mental subnormality</td>
</tr>
<tr>
<td align="left">Eu70y00</td>
<td align="left">[X]Mild mental retardation, other impairments of behaviour</td>
</tr>
<tr>
<td align="left">Eu70z00</td>
<td align="left">[X]Mild mental retardation without mention impairment behav</td>
</tr>
<tr>
<td align="left">Eu71000</td>
<td align="left">[X]Mod mental retard with statement no or min impairm behav</td>
</tr>
<tr>
<td align="left">Eu71100</td>
<td align="left">[X]Mod mental retard sig impairment behav req attent/treatmt</td>
</tr>
<tr>
<td align="left">Eu71.00</td>
<td align="left">[X]Moderate mental retardation</td>
</tr>
<tr>
<td align="left">Eu71.11</td>
<td align="left">[X]Moderate mental subnormality</td>
</tr>
<tr>
<td align="left">Eu71y00</td>
<td align="left">[X]Mod retard oth behav impair</td>
</tr>
<tr>
<td align="left">Eu71z00</td>
<td align="left">[X]Mod mental retardation without mention impairment behav</td>
</tr>
<tr>
<td align="left">Eu72000</td>
<td align="left">[X]Sev mental retard with statement no or min impairm behav</td>
</tr>
<tr>
<td align="left">Eu72100</td>
<td align="left">[X]Sev mental retard sig impairment behav req attent/treatmt</td>
</tr>
<tr>
<td align="left">Eu72.00</td>
<td align="left">[X]Severe mental retardation</td>
</tr>
<tr>
<td align="left">Eu72.11</td>
<td align="left">[X]Severe mental subnormality</td>
</tr>
<tr>
<td align="left">Eu72y00</td>
<td align="left">[X]Severe mental retardation, other impairments of behaviour</td>
</tr>
<tr>
<td align="left">Eu72z00</td>
<td align="left">[X]Sev mental retardation without mention impairment behav</td>
</tr>
<tr>
<td align="left">Eu73000</td>
<td align="left">[X]Profound ment retrd wth statement no or min impairm behav</td>
</tr>
<tr>
<td align="left">Eu73100</td>
<td align="left">[X]Profound ment retard sig impairmnt behav req attent/treat</td>
</tr>
<tr>
<td align="left">Eu73.00</td>
<td align="left">[X]Profound mental retardation</td>
</tr>
<tr>
<td align="left">Eu73.11</td>
<td align="left">[X]Profound mental subnormality</td>
</tr>
<tr>
<td align="left">Eu73y00</td>
<td align="left">[X]Profound mental retardation, other impairments of behavr</td>
</tr>
<tr>
<td align="left">Eu73z00</td>
<td align="left">[X]Prfnd mental retardation without mention impairment behav</td>
</tr>
<tr>
<td align="left">Eu7..00</td>
<td align="left">[X]Mental retardation</td>
</tr>
<tr>
<td align="left">Eu7y000</td>
<td align="left">[X]Oth mental retard with statement no or min impairm behav</td>
</tr>
<tr>
<td align="left">Eu7y100</td>
<td align="left">[X]Oth mental retard sig impairment behav req attent/treatmt</td>
</tr>
<tr>
<td align="left">Eu7y.00</td>
<td align="left">[X]Other mental retardation</td>
</tr>
<tr>
<td align="left">Eu7yy00</td>
<td align="left">[X]Other mental retardation, other impairments of behaviour</td>
</tr>
<tr>
<td align="left">Eu7yz00</td>
<td align="left">[X]Other mental retardation without mention impairment behav</td>
</tr>
<tr>
<td align="left">Eu7z000</td>
<td align="left">[X]Unsp mental retard with statement no or min impairm behav</td>
</tr>
<tr>
<td align="left">Eu7z100</td>
<td align="left">[X]Unsp mentl retard sig impairment behav req attent/treatmt</td>
</tr>
<tr>
<td align="left">Eu7z.00</td>
<td align="left">[X]Unspecified mental retardation</td>
</tr>
<tr>
<td align="left">Eu7z.11</td>
<td align="left">[X]Mental deficiency NOS</td>
</tr>
<tr>
<td align="left">Eu7z.12</td>
<td align="left">[X]Mental subnormality NOS</td>
</tr>
<tr>
<td align="left">Eu7zy00</td>
<td align="left">[X]Unspecified mental retardatn, other impairments of behav</td>
</tr>
<tr>
<td align="left">Eu7zz00</td>
<td align="left">[X]Unsp mental retardation without mention impairment behav</td>
</tr>
<tr>
<td align="left">Eu81400</td>
<td align="left">[X]Moderate learning disability</td>
</tr>
<tr>
<td align="left">Eu81500</td>
<td align="left">[X]Severe learning disability</td>
</tr>
<tr>
<td align="left">Eu81600</td>
<td align="left">[X]Mild learning disability</td>
</tr>
<tr>
<td align="left">Eu81700</td>
<td align="left">[X]Profound learning disability</td>
</tr>
<tr>
<td align="left">Eu81800</td>
<td align="left">[X]Specific learning disability</td>
</tr>
<tr>
<td align="left">Eu81z00</td>
<td align="left">[X]Developmental disorder of scholastic skills, unspecified</td>
</tr>
<tr>
<td align="left">Eu81z11</td>
<td align="left">[X]Learning disability NOS</td>
</tr>
<tr>
<td align="left">Eu81z12</td>
<td align="left">[X]Learning disorder NOS</td>
</tr>
<tr>
<td align="left">Eu81z13</td>
<td align="left">[X]Learn acquisition disab NOS</td>
</tr>
<tr>
<td align="left">Eu84112</td>
<td align="left">[X]Mental retardation with autistic features</td>
</tr>
<tr>
<td align="left">Eu84400</td>
<td align="left">[X]Overactive disorder assoc mental retard/stereotype movts</td>
</tr>
</tbody>
</table>
<h4>Secondary care diagnoses (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//secondary_care/ICD_intell_dz.csv'>ICD_intell_dz.csv</a>)</h4>
<table>
<thead>
<tr>
<th>ICD-10 code</th>
<th>ICD-10 Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left">F70</td>
<td align="left">Mild mental retardation</td>
</tr>
<tr>
<td align="left">F71</td>
<td align="left">Moderate mental retardation</td>
</tr>
<tr>
<td align="left">F72</td>
<td align="left">Severe mental retardation</td>
</tr>
<tr>
<td align="left">F73</td>
<td align="left">Profound mental retardation</td>
</tr>
<tr>
<td align="left">F78</td>
<td align="left">Other mental retardation</td>
</tr>
<tr>
<td align="left">F79</td>
<td align="left">Unspecified mental retardation</td>
</tr>
<tr>
<td align="left">F81.9</td>
<td align="left">Developmental disorder of scholastic skills, unspecified</td>
</tr>
</tbody>
</table>
<h2>Intervertebral disc disorders</h2>
<h4>Implementation</h4>
~~~
At the specified date, a patient is defined as having had 'Intervertebral disc disorders's IF they meet the criteria for any of the following on or before the specified date. The earliest date on which the individual meets any of the following criteria on or before the specified date is defined as the first event date:
Primary care
1. 'Intervertebral disc disorders's diagnosis or history of diagnosis or procedure during a consultation
OR
Secondary care (ICD10)
1. ALL diagnoses of 'Intervertebral disc disorders's or history of diagnosis during a hospitalization
OR
Secondary care (OPCS4)
1. ALL procedures for 'Intervertebral disc disorders's during a hospitalization
~~~
<h4>Primary care (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//primary_care/CPRD_intervert_disc.csv'>CPRD_intervert_disc.csv</a>)</h4>
<table>
<thead>
<tr>
<th>Read code</th>
<th>Read Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left">7J20000</td>
<td align="left">Primary laminectomy excision of cervical intervert disc</td>
</tr>
<tr>
<td align="left">7J20100</td>
<td align="left">Primary hemilaminectomy excision of cervical IV disc</td>
</tr>
<tr>
<td align="left">7J20200</td>
<td align="left">Primary fenestration excision of cervical intervert disc</td>
</tr>
<tr>
<td align="left">7J20300</td>
<td align="left">Primary anterior excis cervical IV disc & interbody fusion</td>
</tr>
<tr>
<td align="left">7J20400</td>
<td align="left">Primary posterior excision of cervical intervertebral disc</td>
</tr>
<tr>
<td align="left">7J20600</td>
<td align="left">Primary anterior excision of cervical intervertebr disc NEC</td>
</tr>
<tr>
<td align="left">7J20700</td>
<td align="left">Primary microdiscectomy of cervical intervertebral disc</td>
</tr>
<tr>
<td align="left">7J20.00</td>
<td align="left">Primary excision of cervical intervertebral disc</td>
</tr>
<tr>
<td align="left">7J20800</td>
<td align="left">Primary laser excision of cervical intervertebral disc</td>
</tr>
<tr>
<td align="left">7J20y00</td>
<td align="left">Primary excision of cervical intervertebral disc OS</td>
</tr>
<tr>
<td align="left">7J20z00</td>
<td align="left">Primary excision of cervical intervertebral disc NOS</td>
</tr>
<tr>
<td align="left">7J21000</td>
<td align="left">Revisional laminectomy excision of cervical intervert disc</td>
</tr>
<tr>
<td align="left">7J21100</td>
<td align="left">Revisional hemilaminectomy excision cervical intervert disc</td>
</tr>
<tr>
<td align="left">7J21200</td>
<td align="left">Revisional fenestration excision of cervical intervert disc</td>
</tr>
<tr>
<td align="left">7J21300</td>
<td align="left">Revision anterior excision cervical disc and fusion</td>
</tr>
<tr>
<td align="left">7J21400</td>
<td align="left">Revisional posterior excision of cervical intervert disc NEC</td>
</tr>
<tr>
<td align="left">7J21600</td>
<td align="left">Revisional anterior excision cervical intervert disc NEC</td>
</tr>
<tr>
<td align="left">7J21700</td>
<td align="left">Revisional microdiscectomy of cervical intervertebral disc</td>
</tr>
<tr>
<td align="left">7J21.00</td>
<td align="left">Revisional excision of cervical intervertebral disc ops</td>
</tr>
<tr>
<td align="left">7J21y00</td>
<td align="left">Revisional excision of cervical intervertebral disc OS</td>
</tr>
<tr>
<td align="left">7J21z00</td>
<td align="left">Revisional excision of cervical intervertebral disc NOS</td>
</tr>
<tr>
<td align="left">7J23000</td>
<td align="left">Primary anterior excision thoracic disc and fusion</td>
</tr>
<tr>
<td align="left">7J23100</td>
<td align="left">Primary anterolateral excision thoracic intervert disc NEC</td>
</tr>
<tr>
<td align="left">7J23200</td>
<td align="left">Primary costotransversectomy of thoracic intervertebral disc</td>
</tr>
<tr>
<td align="left">7J23300</td>
<td align="left">Primary posterior decompression of thoracic disc</td>
</tr>
<tr>
<td align="left">7J23400</td>
<td align="left">Primary anterolateral biopsy of thoracic intervertebral disc</td>
</tr>
<tr>
<td align="left">7J23900</td>
<td align="left">Excision of thoracic intervertebral disc NEC</td>
</tr>
<tr>
<td align="left">7J23w00</td>
<td align="left">Primary excision of thoracic intervertebral disc OS</td>
</tr>
<tr>
<td align="left">7J23x00</td>
<td align="left">Primary excision of thoracic intervertebral disc NOS</td>
</tr>
<tr>
<td align="left">7J24600</td>
<td align="left">Revisional excision of thoracic intervertebral disc NEC</td>
</tr>
<tr>
<td align="left">7J24A00</td>
<td align="left">Revis anterol exc thoracic intervertebral disc graft HFQ</td>
</tr>
<tr>
<td align="left">7J24B00</td>
<td align="left">Revision percutan endosc exc thoracic intervertebral disc</td>
</tr>
<tr>
<td align="left">7J24x00</td>
<td align="left">Revisional excision thoracic intervertebral disc NOS</td>
</tr>
<tr>
<td align="left">7J27000</td>
<td align="left">Prosthetic replacement of cervical intervertebral disc</td>
</tr>
<tr>
<td align="left">7J27200</td>
<td align="left">Prosthetic replacement of lumbar intervertebral disc</td>
</tr>
<tr>
<td align="left">7J32000</td>
<td align="left">Primary laminectomy excision of lumbar intervertebral disc</td>
</tr>
<tr>
<td align="left">7J32100</td>
<td align="left">Primary fenestration excision of lumbar disc</td>
</tr>
<tr>
<td align="left">7J32111</td>
<td align="left">Primary fenestration of lumbar intervertebral disc</td>
</tr>
<tr>
<td align="left">7J32200</td>
<td align="left">Primary anterior excision of lumbar disc and fusion</td>
</tr>
<tr>
<td align="left">7J32211</td>
<td align="left">Freebody anterior excision lumbar IV disc & interbody fusion</td>
</tr>
<tr>
<td align="left">7J32300</td>
<td align="left">Primary anterior excision of lumbar disc NEC</td>
</tr>
<tr>
<td align="left">7J32400</td>
<td align="left">Primary anterior excision of lumbar disc and posterior fusn</td>
</tr>
<tr>
<td align="left">7J32500</td>
<td align="left">Primary ant excision lumbar disc+post instrumentation</td>
</tr>
<tr>
<td align="left">7J32600</td>
<td align="left">Primary lumbar microdiscectomy</td>
</tr>
<tr>
<td align="left">7J32700</td>
<td align="left">Primary posterior excision of lumbar disc</td>
</tr>
<tr>
<td align="left">7J32.00</td>
<td align="left">Primary lumbar discectomy</td>
</tr>
<tr>
<td align="left">7J32.11</td>
<td align="left">Primary excision of lumbar intervertebral disc</td>
</tr>
<tr>
<td align="left">7J32.12</td>
<td align="left">Primary removal of lumbar intervertebral disc</td>
</tr>
<tr>
<td align="left">7J32800</td>
<td align="left">Primary laser excision of lumbar intervertebral disc</td>
</tr>
<tr>
<td align="left">7J32900</td>
<td align="left">Primary percutaneous intradiscal lumbar discectomy</td>
</tr>
<tr>
<td align="left">7J32y00</td>
<td align="left">Other specified primary lumbar discectomy</td>
</tr>
<tr>
<td align="left">7J32z00</td>
<td align="left">Primary excision of lumbar intervertebral disc NOS</td>
</tr>
<tr>
<td align="left">7J33000</td>
<td align="left">Revisional laminectomy excision of lumbar intervert disc</td>
</tr>
<tr>
<td align="left">7J33100</td>
<td align="left">Revisional fenestration excision of lumbar intervert disc</td>
</tr>
<tr>
<td align="left">7J33200</td>
<td align="left">Revisional anterior excision of lumbar disc and fusion</td>
</tr>
<tr>
<td align="left">7J33400</td>
<td align="left">Revisional anterior excision of lumbar disc and post fusion</td>
</tr>
<tr>
<td align="left">7J33411</td>
<td align="left">Revisional anterior excision of lumbar disc and post fusion</td>
</tr>
<tr>
<td align="left">7J33600</td>
<td align="left">Revisional lumbar microdiscectomy</td>
</tr>
<tr>
<td align="left">7J33700</td>
<td align="left">Revisional posterior excision of lumbar disc</td>
</tr>
<tr>
<td align="left">7J33.00</td>
<td align="left">Revisional lumbar discectomy</td>
</tr>
<tr>
<td align="left">7J33.11</td>
<td align="left">Revisional excision of lumbar intervertebral disc</td>
</tr>
<tr>
<td align="left">7J33.12</td>
<td align="left">Revisional removal of lumbar intervertebral disc</td>
</tr>
<tr>
<td align="left">7J33y00</td>
<td align="left">Other specified revisional lumbar discectomy</td>
</tr>
<tr>
<td align="left">7J33z00</td>
<td align="left">Revisional excision of lumbar intervertebral disc NOS</td>
</tr>
<tr>
<td align="left">7J4H000</td>
<td align="left">Primary automated percutan mech excis cerv intervert disc</td>
</tr>
<tr>
<td align="left">7J4J000</td>
<td align="left">Revisional automated percutan mech exc cerv intervert disc</td>
</tr>
<tr>
<td align="left">7J4K000</td>
<td align="left">Primary percutaneous decompres coblat cerv intervert disc</td>
</tr>
<tr>
<td align="left">7J4L000</td>
<td align="left">Revisional percutaneous decompres coblat cerv intervert disc</td>
</tr>
<tr>
<td align="left">7J4M000</td>
<td align="left">Primary percut intrad radio thermocoag cerv intervert disc</td>
</tr>
<tr>
<td align="left">F163000</td>
<td align="left">Myelopathy due to intervertebral disc disease</td>
</tr>
<tr>
<td align="left">F337100</td>
<td align="left">Nerve root and plexus compressions in intervert disc disord</td>
</tr>
<tr>
<td align="left">N120.00</td>
<td align="left">Cervical disc displacement without myelopathy</td>
</tr>
<tr>
<td align="left">N120.11</td>
<td align="left">Prolapsed cervical intervertebral disc without myelopathy</td>
</tr>
<tr>
<td align="left">N120.12</td>
<td align="left">Cervical disc displacement</td>
</tr>
<tr>
<td align="left">N121.00</td>
<td align="left">Thoracic disc displacement without myelopathy</td>
</tr>
<tr>
<td align="left">N121.11</td>
<td align="left">Prolapsed thoracic intervertebral disc without myelopathy</td>
</tr>
<tr>
<td align="left">N122.00</td>
<td align="left">Lumbar disc displacement</td>
</tr>
<tr>
<td align="left">N122.11</td>
<td align="left">Prolapsed lumbar intervertebral disc</td>
</tr>
<tr>
<td align="left">N123.00</td>
<td align="left">Disc displacement, site unspecified, without myelopathy</td>
</tr>
<tr>
<td align="left">N123.11</td>
<td align="left">Intervertebral disc prolapse NOS</td>
</tr>
<tr>
<td align="left">N123.12</td>
<td align="left">Prolapsed intervertebral disc without myelopathy</td>
</tr>
<tr>
<td align="left">N124000</td>
<td align="left">Schmorl's nodes of unspecified region</td>
</tr>
<tr>
<td align="left">N124100</td>
<td align="left">Schmorl's nodes of the thoracic region</td>
</tr>
<tr>
<td align="left">N124200</td>
<td align="left">Schmorl's nodes of the lumbar region</td>
</tr>
<tr>
<td align="left">N124.00</td>
<td align="left">Schmorl's nodes</td>
</tr>
<tr>
<td align="left">N124z00</td>
<td align="left">Schmorl's nodes, region NOS</td>
</tr>
<tr>
<td align="left">N125.00</td>
<td align="left">Cervical disc degeneration</td>
</tr>
<tr>
<td align="left">N126.00</td>
<td align="left">Thoracic disc degeneration</td>
</tr>
<tr>
<td align="left">N127.00</td>
<td align="left">Lumbar disc degeneration</td>
</tr>
<tr>
<td align="left">N128.00</td>
<td align="left">Degenerative disc disease NOS</td>
</tr>
<tr>
<td align="left">N129000</td>
<td align="left">Unspecified disc disorder with myelopathy</td>
</tr>
<tr>
<td align="left">N129100</td>
<td align="left">Cervical disc disorder with myelopathy</td>
</tr>
<tr>
<td align="left">N129200</td>
<td align="left">Thoracic disc disorder with myelopathy</td>
</tr>
<tr>
<td align="left">N129300</td>
<td align="left">Lumbar disc disorder with myelopathy</td>
</tr>
<tr>
<td align="left">N129.00</td>
<td align="left">Disc disorder with myelopathy</td>
</tr>
<tr>
<td align="left">N129.11</td>
<td align="left">Prolapsed intervertebral disc with associated myelopathy</td>
</tr>
<tr>
<td align="left">N129z00</td>
<td align="left">Disc disorder with myelopathy NOS</td>
</tr>
<tr>
<td align="left">N12B000</td>
<td align="left">Cervical disc prolapse with myelopathy</td>
</tr>
<tr>
<td align="left">N12B100</td>
<td align="left">Thoracic disc prolapse with myelopathy</td>
</tr>
<tr>
<td align="left">N12B200</td>
<td align="left">Lumbar disc prolapse with myelopathy</td>
</tr>
<tr>
<td align="left">N12B.00</td>
<td align="left">Disc prolapse with myelopathy</td>
</tr>
<tr>
<td align="left">N12C000</td>
<td align="left">Cervical disc prolapse with radiculopathy</td>
</tr>
<tr>
<td align="left">N12C100</td>
<td align="left">Thoracic disc prolapse with radiculopathy</td>
</tr>
<tr>
<td align="left">N12C200</td>
<td align="left">Lumbar disc prolapse with radiculopathy</td>
</tr>
<tr>
<td align="left">N12C300</td>
<td align="left">Lumbar disc prolapse with cauda equina compression</td>
</tr>
<tr>
<td align="left">N12C400</td>
<td align="left">Prolapsed lumbar intervertebral disc with sciatica</td>
</tr>
<tr>
<td align="left">N12C.00</td>
<td align="left">Disc prolapse with radiculopathy</td>
</tr>
<tr>
<td align="left">N12..00</td>
<td align="left">Intervertebral disc disorders</td>
</tr>
<tr>
<td align="left">N12z000</td>
<td align="left">Other disc disorders of unspecified site</td>
</tr>
<tr>
<td align="left">N12z100</td>
<td align="left">Other cervical disc disorders</td>
</tr>
<tr>
<td align="left">N12z200</td>
<td align="left">Other thoracic disc disorders</td>
</tr>
<tr>
<td align="left">N12z300</td>
<td align="left">Other lumbar disc disorders</td>
</tr>
<tr>
<td align="left">N12z500</td>
<td align="left">Annular tear of cervical disc</td>
</tr>
<tr>
<td align="left">N12z600</td>
<td align="left">Resorption of cervical disc</td>
</tr>
<tr>
<td align="left">N12z700</td>
<td align="left">Calcification of cervical disc</td>
</tr>
<tr>
<td align="left">N12z900</td>
<td align="left">Annular tear of thoracic disc</td>
</tr>
<tr>
<td align="left">N12zB00</td>
<td align="left">Calcification of thoracic disc</td>
</tr>
<tr>
<td align="left">N12zD00</td>
<td align="left">Annular tear of lumbar disc</td>
</tr>
<tr>
<td align="left">N12zE00</td>
<td align="left">Resorption of lumbar disc</td>
</tr>
<tr>
<td align="left">N12zF00</td>
<td align="left">Calcification of lumbar disc</td>
</tr>
<tr>
<td align="left">N12zH00</td>
<td align="left">Cervical disc disorder with radiculopathy</td>
</tr>
<tr>
<td align="left">N12z.00</td>
<td align="left">Other and unspecified disc disorders</td>
</tr>
<tr>
<td align="left">N12zz00</td>
<td align="left">Disc disorders NOS</td>
</tr>
<tr>
<td align="left">Nyu7000</td>
<td align="left">[X]Other cervical disc displacement</td>
</tr>
<tr>
<td align="left">Nyu7100</td>
<td align="left">[X]Other cervical disc degeneration</td>
</tr>
<tr>
<td align="left">Nyu7200</td>
<td align="left">[X]Other cervical disc disorders</td>
</tr>
<tr>
<td align="left">Nyu7300</td>
<td align="left">[X]Lumbar+other intervertebral disc disordrs with myelopathy</td>
</tr>
<tr>
<td align="left">Nyu7400</td>
<td align="left">[X]Lumbar+other intervertbrl disc disordrs with radiculopthy</td>
</tr>
<tr>
<td align="left">Nyu7500</td>
<td align="left">[X]Other specified intervertebral disc displacement</td>
</tr>
<tr>
<td align="left">Nyu7600</td>
<td align="left">[X]Other specified intervertebral disc degeneration</td>
</tr>
<tr>
<td align="left">Nyu7700</td>
<td align="left">[X]Other specified intervertebral disc disorders</td>
</tr>
<tr>
<td align="left">Nyu7B00</td>
<td align="left">[X]Cervical disc disorder, unspecified</td>
</tr>
<tr>
<td align="left">Zw04000</td>
<td align="left">[Q] Central disc prolapse</td>
</tr>
<tr>
<td align="left">Zw04100</td>
<td align="left">[Q] Posterolateral disc prolapse</td>
</tr>
<tr>
<td align="left">Zw04200</td>
<td align="left">[Q] Sequestrated disc prolapse</td>
</tr>
</tbody>
</table>
<h4>Secondary care diagnoses (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//secondary_care/ICD_intervert_disc.csv'>ICD_intervert_disc.csv</a>)</h4>
<table>
<thead>
<tr>
<th>ICD-10 code</th>
<th>ICD-10 Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left">M50</td>
<td align="left">Cervical disc disorders</td>
</tr>
<tr>
<td align="left">M51</td>
<td align="left">Other intervertebral disc disorders</td>
</tr>
</tbody>
</table>
<h4>Secondary care procedures (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//secondary_care/OPCS_intervert_disc.csv'>OPCS_intervert_disc.csv</a>)</h4>
<table>
<thead>
<tr>
<th>OPCS-4 code</th>
<th>OPCS-4 Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left">V29</td>
<td align="left">Primary excision of cervical intervertebral disc</td>
</tr>
<tr>
<td align="left">V29.1</td>
<td align="left">Primary laminectomy excision of cervical intervertebral disc</td>
</tr>
<tr>
<td align="left">V29.2</td>
<td align="left">Primary hemilaminectomy excision of cervical intervertebral disc</td>
</tr>
<tr>
<td align="left">V29.3</td>
<td align="left">Primary fenestration excision of cervical intervertebral disc</td>
</tr>
<tr>
<td align="left">V29.4</td>
<td align="left">Primary anterior excision of cervical intervertebral disc and interbody fusion of joint of cervical spine</td>
</tr>
<tr>
<td align="left">V29.5</td>
<td align="left">Primary anterior excision of cervical intervertebral disc NEC</td>
</tr>
<tr>
<td align="left">V29.6</td>
<td align="left">Primary microdiscectomy of cervical intervertebral disc</td>
</tr>
<tr>
<td align="left">V29.8</td>
<td align="left">Other specified primary excision of cervical intervertebral disc</td>
</tr>
<tr>
<td align="left">V29.9</td>
<td align="left">Unspecified primary excision of cervical intervertebral disc</td>
</tr>
<tr>
<td align="left">V30</td>
<td align="left">Revisional excision of cervical intervertebral disc</td>
</tr>
<tr>
<td align="left">V30.1</td>
<td align="left">Revisional laminectomy excision of cervical intervertebral disc</td>
</tr>
<tr>
<td align="left">V30.2</td>
<td align="left">Revisional hemilaminectomy excision of cervical intervertebral disc</td>
</tr>
<tr>
<td align="left">V30.3</td>
<td align="left">Revisional fenestration excision of cervical intervertebral disc</td>
</tr>
<tr>
<td align="left">V30.4</td>
<td align="left">Revisional anterior excision of cervical intervertebral disc and interbody fusion of joint of cervical spine</td>
</tr>
<tr>
<td align="left">V30.5</td>
<td align="left">Revisional anterior excision of cervical intervertebral disc NEC</td>
</tr>
<tr>
<td align="left">V30.6</td>
<td align="left">Revisional microdiscectomy of cervical intervertebral disc</td>
</tr>
<tr>
<td align="left">V30.8</td>
<td align="left">Other specified revisional excision of cervical intervertebral disc</td>
</tr>
<tr>
<td align="left">V30.9</td>
<td align="left">Unspecified revisional excision of cervical intervertebral disc</td>
</tr>
<tr>
<td align="left">V31</td>
<td align="left">Primary excision of thoracic intervertebral disc</td>
</tr>
<tr>
<td align="left">V31.1</td>
<td align="left">Primary anterolateral excision of thoracic intervertebral disc and graft HFQ</td>
</tr>
<tr>
<td align="left">V31.2</td>
<td align="left">Primary anterolateral excision of thoracic intervertebral disc NEC</td>
</tr>
<tr>
<td align="left">V31.3</td>
<td align="left">Primary costotransversectomy of thoracic intervertebral disc</td>
</tr>
<tr>
<td align="left">V31.4</td>
<td align="left">Primary percutaneous endoscopic excision of thoracic intervertebral disc</td>
</tr>
<tr>
<td align="left">V31.8</td>
<td align="left">Other specified primary excision of thoracic intervertebral disc</td>
</tr>
<tr>
<td align="left">V31.9</td>
<td align="left">Unspecified primary excision of thoracic intervertebral disc</td>
</tr>
<tr>
<td align="left">V32</td>
<td align="left">Revisional excision of thoracic intervertebral disc</td>
</tr>
<tr>
<td align="left">V32.1</td>
<td align="left">Revisional anterolateral excision of thoracic intervertebral disc and graft HFQ</td>
</tr>
<tr>
<td align="left">V32.2</td>
<td align="left">Revisional anterolateral excision of thoracic intervertebral disc NEC</td>
</tr>
<tr>
<td align="left">V32.3</td>
<td align="left">Revisional costotransversectomy of thoracic intervertebral disc</td>
</tr>
<tr>
<td align="left">V32.4</td>
<td align="left">Revisional percutaneous endoscopic excision of thoracic intervertebral disc</td>
</tr>
<tr>
<td align="left">V32.8</td>
<td align="left">Other specified revisional excision of thoracic intervertebral disc</td>
</tr>
<tr>
<td align="left">V32.9</td>
<td align="left">Unspecified revisional excision of thoracic intervertebral disc</td>
</tr>
<tr>
<td align="left">V33</td>
<td align="left">Primary excision of lumbar intervertebral disc</td>
</tr>
<tr>
<td align="left">V33.1</td>
<td align="left">Primary laminectomy excision of lumbar intervertebral disc</td>
</tr>
<tr>
<td align="left">V33.2</td>
<td align="left">Primary fenestration excision of lumbar intervertebral disc</td>
</tr>
<tr>
<td align="left">V33.3</td>
<td align="left">Primary anterior excision of lumbar intervertebral disc and interbody fusion of joint of lumbar spine</td>
</tr>
<tr>
<td align="left">V33.4</td>
<td align="left">Primary anterior excision of lumbar intervertebral disc NEC</td>
</tr>
<tr>
<td align="left">V33.5</td>
<td align="left">Primary anterior excision of lumbar intervertebral disc and posterior graft fusion of joint of lumbar spine</td>
</tr>
<tr>
<td align="left">V33.6</td>
<td align="left">Primary anterior excision of lumbar intervertebral disc and posterior instrumentation of lumbar spine</td>
</tr>
<tr>
<td align="left">V33.7</td>
<td align="left">Primary microdiscectomy of lumbar intervertebral disc</td>
</tr>
<tr>
<td align="left">V33.8</td>
<td align="left">Other specified primary excision of lumbar intervertebral disc</td>
</tr>
<tr>
<td align="left">V33.9</td>
<td align="left">Unspecified primary excision of lumbar intervertebral disc</td>
</tr>
<tr>
<td align="left">V34</td>
<td align="left">Revisional excision of lumbar intervertebral disc</td>
</tr>
<tr>
<td align="left">V34.1</td>
<td align="left">Revisional laminectomy excision of lumbar intervertebral disc</td>
</tr>
<tr>
<td align="left">V34.2</td>
<td align="left">Revisional fenestration excision of lumbar intervertebral disc</td>
</tr>
<tr>
<td align="left">V34.3</td>
<td align="left">Revisional anterior excision of lumbar intervertebral disc and interbody fusion of joint of lumbar spine</td>
</tr>
<tr>
<td align="left">V34.4</td>
<td align="left">Revisional anterior excision of lumbar intervertebral disc NEC</td>
</tr>
<tr>
<td align="left">V34.5</td>
<td align="left">Revisional anterior excision of lumbar intervertebral disc and posterior graft fusion of joint of lumbar spine</td>
</tr>
<tr>
<td align="left">V34.6</td>
<td align="left">Revisional anterior excision of lumbar intervertebral disc and posterior instrumentation of lumbar spine</td>
</tr>
<tr>
<td align="left">V34.7</td>
<td align="left">Revisional microdiscectomy of lumbar intervertebral disc</td>
</tr>
<tr>
<td align="left">V34.8</td>
<td align="left">Other specified revisional excision of lumbar intervertebral disc</td>
</tr>
<tr>
<td align="left">V34.9</td>
<td align="left">Unspecified revisional excision of lumbar intervertebral disc</td>
</tr>
<tr>
<td align="left">V35</td>
<td align="left">Excision of unspecified intervertebral disc</td>
</tr>
<tr>
<td align="left">V35.1</td>
<td align="left">Primary excision of intervertebral disc NEC</td>
</tr>
<tr>
<td align="left">V35.2</td>
<td align="left">Revisional excision of intervertebral disc NEC</td>
</tr>
<tr>
<td align="left">V35.8</td>
<td align="left">Other specified excision of unspecified intervertebral disc</td>
</tr>
<tr>
<td align="left">V35.9</td>
<td align="left">Unspecified excision of unspecified intervertebral disc</td>
</tr>
<tr>
<td align="left">V36</td>
<td align="left">Prosthetic replacement of intervertebral disc</td>
</tr>
<tr>
<td align="left">V36.1</td>
<td align="left">Prosthetic replacement of cervical intervertebral disc</td>
</tr>
<tr>
<td align="left">V36.2</td>
<td align="left">Prosthetic replacement of thoracic intervertebral disc</td>
</tr>
<tr>
<td align="left">V36.3</td>
<td align="left">Prosthetic replacement of lumbar intervertebral disc</td>
</tr>
<tr>
<td align="left">V36.8</td>
<td align="left">Other specified prosthetic replacement of intervertebral disc</td>
</tr>
<tr>
<td align="left">V36.9</td>
<td align="left">Unspecified prosthetic replacement of intervertebral disc</td>
</tr>
<tr>
<td align="left">V51</td>
<td align="left">Other primary excision of lumbar intervertebral disc</td>
</tr>
<tr>
<td align="left">V51.1</td>
<td align="left">Primary direct lateral excision of lumbar intervertebral disc and interbody fusion of joint of lumbar spine</td>
</tr>
<tr>
<td align="left">V51.8</td>
<td align="left">Other specified other primary excision of lumbar intervertebral disc</td>
</tr>
<tr>
<td align="left">V51.9</td>
<td align="left">Unspecified other primary excision of lumbar intervertebral disc</td>
</tr>
<tr>
<td align="left">V52</td>
<td align="left">Other operations on intervertebral disc</td>
</tr>
<tr>
<td align="left">V52.1</td>
<td align="left">Enzyme destruction of intervertebral disc</td>
</tr>
<tr>
<td align="left">V52.2</td>
<td align="left">Destruction of intervertebral disc NEC</td>
</tr>
<tr>
<td align="left">V52.3</td>
<td align="left">Discography of intervertebral disc</td>
</tr>
<tr>
<td align="left">V52.4</td>
<td align="left">Biopsy of lesion of intervertebral disc NEC</td>
</tr>
<tr>
<td align="left">V52.5</td>
<td align="left">Aspiration of intervertebral disc NEC</td>
</tr>
<tr>
<td align="left">V52.8</td>
<td align="left">Other specified other operations on intervertebral disc</td>
</tr>
<tr>
<td align="left">V52.9</td>
<td align="left">Unspecified other operations on intervertebral disc</td>
</tr>
<tr>
<td align="left">V58</td>
<td align="left">Primary automated percutaneous mechanical excision of intervertebral disc</td>
</tr>
<tr>
<td align="left">V58.1</td>
<td align="left">Primary automated percutaneous mechanical excision of cervical intervertebral disc</td>
</tr>
<tr>
<td align="left">V58.2</td>
<td align="left">Primary automated percutaneous mechanical excision of thoracic intervertebral disc</td>
</tr>
<tr>
<td align="left">V58.3</td>
<td align="left">Primary automated percutaneous mechanical excision of lumbar intervertebral disc</td>
</tr>
<tr>
<td align="left">V58.8</td>
<td align="left">Other specified primary automated percutaneous mechanical excision of intervertebral disc</td>
</tr>
<tr>
<td align="left">V58.9</td>
<td align="left">Unspecified primary automated percutaneous mechanical excision of intervertebral disc</td>
</tr>
<tr>
<td align="left">V59</td>
<td align="left">Revisional automated percutaneous mechanical excision of intervertebral disc</td>
</tr>
<tr>
<td align="left">V59.1</td>
<td align="left">Revisional automated percutaneous mechanical excision of cervical intervertebral disc</td>
</tr>
<tr>
<td align="left">V59.2</td>
<td align="left">Revisional automated percutaneous mechanical excision of thoracic intervertebral disc</td>
</tr>
<tr>
<td align="left">V59.3</td>
<td align="left">Revisional automated percutaneous mechanical excision of lumbar intervertebral disc</td>
</tr>
<tr>
<td align="left">V59.8</td>
<td align="left">Other specified revisional automated percutaneous mechanical excision of intervertebral disc</td>
</tr>
<tr>
<td align="left">V59.9</td>
<td align="left">Unspecified revisional automated percutaneous mechanical excision of intervertebral disc</td>
</tr>
<tr>
<td align="left">V60</td>
<td align="left">Primary percutaneous decompression using coblation to intervertebral disc</td>
</tr>
<tr>
<td align="left">V60.1</td>
<td align="left">Primary percutaneous decompression using coblation to cervical intervertebral disc</td>
</tr>
<tr>
<td align="left">V60.2</td>
<td align="left">Primary percutaneous decompression using coblation to thoracic intervertebral disc</td>
</tr>
<tr>
<td align="left">V60.3</td>
<td align="left">Primary percutaneous decompression using coblation to lumbar intervertebral disc</td>
</tr>
<tr>
<td align="left">V60.8</td>
<td align="left">Other specified primary percutaneous decompression using coblation to intervertebral disc</td>
</tr>
<tr>
<td align="left">V60.9</td>
<td align="left">Unspecified primary percutaneous decompression using coblation to intervertebral disc</td>
</tr>
<tr>
<td align="left">V61</td>
<td align="left">Revisional percutaneous decompression using coblation to intervertebral disc</td>
</tr>
<tr>
<td align="left">V61.1</td>
<td align="left">Revisional percutaneous decompression using coblation to cervical intervertebral disc</td>
</tr>
<tr>
<td align="left">V61.2</td>
<td align="left">Revisional percutaneous decompression using coblation to thoracic intervertebral disc</td>
</tr>
<tr>
<td align="left">V61.3</td>
<td align="left">Revisional percutaneous decompression using coblation to lumbar intervertebral disc</td>
</tr>
<tr>
<td align="left">V61.8</td>
<td align="left">Other specified revisional percutaneous decompression using coblation to intervertebral disc</td>
</tr>
<tr>
<td align="left">V61.9</td>
<td align="left">Unspecified revisional percutaneous decompression using coblation to intervertebral disc</td>
</tr>
<tr>
<td align="left">V62</td>
<td align="left">Primary percutaneous intradiscal radiofrequency thermocoagulation to intervertebral disc</td>
</tr>
<tr>
<td align="left">V62.1</td>
<td align="left">Primary percutaneous intradiscal radiofrequency thermocoagulation to cervical intervertebral disc</td>
</tr>
<tr>
<td align="left">V62.2</td>
<td align="left">Primary percutaneous intradiscal radiofrequency thermocoagulation to thoracic intervertebral disc</td>
</tr>
<tr>
<td align="left">V62.3</td>
<td align="left">Primary percutaneous intradiscal radiofrequency thermocoagulation to lumbar intervertebral disc</td>
</tr>
<tr>
<td align="left">V62.8</td>
<td align="left">Other specified primary percutaneous intradiscal radiofrequency thermocoagulation to intervertebral disc</td>
</tr>
<tr>
<td align="left">V62.9</td>
<td align="left">Unspecified primary percutaneous intradiscal radiofrequency thermocoagulation to intervertebral disc</td>
</tr>
<tr>
<td align="left">V63</td>
<td align="left">Revisional percutaneous intradiscal radiofrequency thermocoagulation to intervertebral disc</td>
</tr>
<tr>
<td align="left">V63.1</td>
<td align="left">Revisional percutaneous intradiscal radiofrequency thermocoagulation to cervical intervertebral disc</td>
</tr>
<tr>
<td align="left">V63.2</td>
<td align="left">Revisional percutaneous intradiscal radiofrequency thermocoagulation to thoracic intervertebral disc</td>
</tr>
<tr>
<td align="left">V63.3</td>
<td align="left">Revisional percutaneous intradiscal radiofrequency thermocoagulation to lumbar intervertebral disc</td>
</tr>
<tr>
<td align="left">V63.8</td>
<td align="left">Other specified revisional percutaneous intradiscal radiofrequency thermocoagulation to intervertebral disc</td>
</tr>
<tr>
<td align="left">V63.9</td>
<td align="left">Unspecified revisional percutaneous intradiscal radiofrequency thermocoagulation to intervertebral disc</td>
</tr>
</tbody>
</table>
<h2>Intracerebral haemorrhage</h2>
<h4>Implementation</h4>
~~~
At the specified date, a patient is defined as having had an 'Intracerebral haemorrhage' IF they meet the criteria for any of the following on or before the specified date. The earliest date on which the individual meets any of the following criteria on or before the specified date is defined as the first event date:
Primary care
1. 'Intracerebral haemorrhage' diagnosis or history of diagnosis during a consultation
OR
Secondary care
1. ALL diagnoses of 'Intracerebral haemorrhage' or sequelae of 'Intracerebral haemorrhage' during a hospitalization
~~~
<h4>Primary care (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//primary_care/CPRD_Intracereb_haem.csv'>CPRD_Intracereb_haem.csv</a>)</h4>
<table>
<thead>
<tr>
<th>Read code</th>
<th>Read Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left">662o.00</td>
<td align="left">Haemorrhagic stroke monitoring</td>
</tr>
<tr>
<td align="left">7004300.0</td>
<td align="left">Evacuation of intracerebral haematoma NEC</td>
</tr>
<tr>
<td align="left">G610.00</td>
<td align="left">Cortical haemorrhage</td>
</tr>
<tr>
<td align="left">G611.00</td>
<td align="left">Internal capsule haemorrhage</td>
</tr>
<tr>
<td align="left">G612.00</td>
<td align="left">Basal nucleus haemorrhage</td>
</tr>
<tr>
<td align="left">G613.00</td>
<td align="left">Cerebellar haemorrhage</td>
</tr>
<tr>
<td align="left">G614.00</td>
<td align="left">Pontine haemorrhage</td>
</tr>
<tr>
<td align="left">G615.00</td>
<td align="left">Bulbar haemorrhage</td>
</tr>
<tr>
<td align="left">G616.00</td>
<td align="left">External capsule haemorrhage</td>
</tr>
<tr>
<td align="left">G617.00</td>
<td align="left">Intracerebral haemorrhage, intraventricular</td>
</tr>
<tr>
<td align="left">G618.00</td>
<td align="left">Intracerebral haemorrhage, multiple localized</td>
</tr>
<tr>
<td align="left">G619.00</td>
<td align="left">Lobar cerebral haemorrhage</td>
</tr>
<tr>
<td align="left">G61..00</td>
<td align="left">Intracerebral haemorrhage</td>
</tr>
<tr>
<td align="left">G61..11</td>
<td align="left">CVA - cerebrovascular accid due to intracerebral haemorrhage</td>
</tr>
<tr>
<td align="left">G61..12</td>
<td align="left">Stroke due to intracerebral haemorrhage</td>
</tr>
<tr>
<td align="left">G61X000</td>
<td align="left">Left sided intracerebral haemorrhage, unspecified</td>
</tr>
<tr>
<td align="left">G61X100</td>
<td align="left">Right sided intracerebral haemorrhage, unspecified</td>
</tr>
<tr>
<td align="left">G61X.00</td>
<td align="left">Intracerebral haemorrhage in hemisphere, unspecified</td>
</tr>
<tr>
<td align="left">G61z.00</td>
<td align="left">Intracerebral haemorrhage NOS</td>
</tr>
<tr>
<td align="left">G681.00</td>
<td align="left">Sequelae of intracerebral haemorrhage</td>
</tr>
<tr>
<td align="left">G682.00</td>
<td align="left">Sequelae of other nontraumatic intracranial haemorrhage</td>
</tr>
<tr>
<td align="left">Gyu6200</td>
<td align="left">[X]Other intracerebral haemorrhage</td>
</tr>
<tr>
<td align="left">Gyu6F00</td>
<td align="left">[X]Intracerebral haemorrhage in hemisphere, unspecified</td>
</tr>
</tbody>
</table>
<h4>Secondary care diagnoses (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//secondary_care/ICD_Intracereb_haem.csv'>ICD_Intracereb_haem.csv</a>)</h4>
<table>
<thead>
<tr>
<th>ICD-10 code</th>
<th>ICD-10 Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left">I61</td>
<td align="left">Intracerebral haemorrhage</td>
</tr>
<tr>
<td align="left">I69.1</td>
<td align="left">Sequelae of intracerebral haemorrhage</td>
</tr>
</tbody>
</table>
<h2>Intracranial hypertension</h2>
<h4>Implementation</h4>
~~~
At the specified date, a patient is defined as having had 'Intracranial hypertension' IF they meet the criteria for any of the following on or before the specified date. The earliest date on which the individual meets any of the following criteria on or before the specified date is defined as the first event date:
Primary care
1. 'Intracranial hypertension' diagnosis or history of diagnosis during a consultation
OR
Secondary care
1. ALL diagnoses of 'Intracranial hypertension' or history of diagnosis during a hospitalization
~~~
<h4>Primary care (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//primary_care/CPRD_intracranial_htn.csv'>CPRD_intracranial_htn.csv</a>)</h4>
<table>
<thead>
<tr>
<th>Read code</th>
<th>Read Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left">F282.00</td>
<td align="left">Benign intracranial hypertension</td>
</tr>
<tr>
<td align="left">F282.11</td>
<td align="left">Pseudotumour cerebri</td>
</tr>
</tbody>
</table>
<h4>Secondary care diagnoses (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//secondary_care/ICD_intracranial_htn.csv'>ICD_intracranial_htn.csv</a>)</h4>
<table>
<thead>
<tr>
<th>ICD-10 code</th>
<th>ICD-10 Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left">G93.2</td>
<td align="left">Benign intracranial hypertension</td>
</tr>
</tbody>
</table>
<h2>Intrauterine hypoxia</h2>
<h4>Implementation</h4>
~~~
At the specified date, a patient is defined as having had Post-term infant IF they meet the criteria for any of the following on or before the specified date. The earliest date on which the individual meets any of the following criteria on or before the specified date is defined as the first event date:
Primary care
1. Post-term infant diagnosis or history of diagnosis during a consultation AND IF the patient is aged < 1y at the first event date
OR
Secondary care
1. ALL diagnoses of Post-term infant or history of diagnosis during a hospitalization AND IF the patient is aged < 1y at the first event date
~~~
<h4>Primary care (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//primary_care/CPRD_intrauterine_hypoxia.csv'>CPRD_intrauterine_hypoxia.csv</a>)</h4>
<table>
<thead>
<tr>
<th>Read code</th>
<th>Read Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left">4H23.00</td>
<td align="left">Amniotic fluid -meconium stain</td>
</tr>
<tr>
<td align="left">L263000</td>
<td align="left">Fetal distress unspecified</td>
</tr>
<tr>
<td align="left">L263100</td>
<td align="left">Fetal distress - delivered</td>
</tr>
<tr>
<td align="left">L263200</td>
<td align="left">Fetal distress with antenatal problem</td>
</tr>
<tr>
<td align="left">L263400</td>
<td align="left">Labour and delivery complic by meconium in amniotic fluid</td>
</tr>
<tr>
<td align="left">L263500</td>
<td align="left">Lab+del comp fetal ht rate anom wth meconium in amnio fluid</td>
</tr>
<tr>
<td align="left">L263600</td>
<td align="left">Labour+delivery complicatd by biochem evidence/fetal stress</td>
</tr>
<tr>
<td align="left">L263700</td>
<td align="left">Maternal care for fetal hypoxia</td>
</tr>
<tr>
<td align="left">L263.00</td>
<td align="left">Fetal distress - affecting management</td>
</tr>
<tr>
<td align="left">L263.11</td>
<td align="left">Fetal acidosis</td>
</tr>
<tr>
<td align="left">L263.14</td>
<td align="left">Meconium stained liquor</td>
</tr>
<tr>
<td align="left">L263z00</td>
<td align="left">Fetal distress NOS</td>
</tr>
<tr>
<td align="left">Lyu4800</td>
<td align="left">[X]Labour+delivery complicat/oth evidence of fetal distress</td>
</tr>
<tr>
<td align="left">Q212000</td>
<td align="left">Liveborn with prelabour abnormal heart beat</td>
</tr>
<tr>
<td align="left">Q212100</td>
<td align="left">Liveborn with prelabour hypoxia</td>
</tr>
<tr>
<td align="left">Q212200</td>
<td align="left">Liveborn with prelabour meconium in liquor</td>
</tr>
<tr>
<td align="left">Q212.00</td>
<td align="left">Liveborn with prelabour fetal distress</td>
</tr>
<tr>
<td align="left">Q212.11</td>
<td align="left">Fetal distress before labour - liveborn</td>
</tr>
<tr>
<td align="left">Q212z00</td>
<td align="left">Liveborn with prelabour fetal distress NOS</td>
</tr>
<tr>
<td align="left">Q213000</td>
<td align="left">Liveborn with labour abnormal heart beat</td>
</tr>
<tr>
<td align="left">Q213100</td>
<td align="left">Liveborn with labour hypoxia</td>
</tr>
<tr>
<td align="left">Q213200</td>
<td align="left">Liveborn with labour meconium in liquor</td>
</tr>
<tr>
<td align="left">Q213.00</td>
<td align="left">Liveborn with labour fetal distress</td>
</tr>
<tr>
<td align="left">Q213.11</td>
<td align="left">Fetal distress in labour - liveborn</td>
</tr>
<tr>
<td align="left">Q213z00</td>
<td align="left">Liveborn with labour fetal distress NOS</td>
</tr>
<tr>
<td align="left">Q214000</td>
<td align="left">Liveborn with abnormal heart beat, unspecified</td>
</tr>
<tr>
<td align="left">Q214100</td>
<td align="left">Liveborn with fetal hypoxia, unspecified</td>
</tr>
<tr>
<td align="left">Q214200</td>
<td align="left">Liveborn with meconium liquor, unspecified</td>
</tr>
<tr>
<td align="left">Q214.00</td>
<td align="left">Liveborn with fetal distress, unspecified</td>
</tr>
<tr>
<td align="left">Q214.11</td>
<td align="left">Fetal distress, unspecified when, liveborn</td>
</tr>
<tr>
<td align="left">Q214z00</td>
<td align="left">Liveborn with unspecified fetal distress NOS</td>
</tr>
<tr>
<td align="left">Q21..00</td>
<td align="left">Intrauterine hypoxia and birth asphyxia</td>
</tr>
<tr>
<td align="left">Q21..11</td>
<td align="left">Intrauterine hypoxia</td>
</tr>
<tr>
<td align="left">Q21..12</td>
<td align="left">Labour fetal anoxia</td>
</tr>
<tr>
<td align="left">Q311000</td>
<td align="left">Meconium aspiration syndrome</td>
</tr>
<tr>
<td align="left">Z264800</td>
<td align="left">Meconium stained liquor</td>
</tr>
<tr>
<td align="left">Z264900</td>
<td align="left">Old meconium staining liquor</td>
</tr>
<tr>
<td align="left">Z264A00</td>
<td align="left">Fresh meconium staining liquor</td>
</tr>
<tr>
<td align="left">Z264B00</td>
<td align="left">Thick meconium stained liquor</td>
</tr>
</tbody>
</table>
<h4>Secondary care diagnoses (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//secondary_care/ICD_intrauterine_hypoxia.csv'>ICD_intrauterine_hypoxia.csv</a>)</h4>
<table>
<thead>
<tr>
<th>ICD-10 code</th>
<th>ICD-10 Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left">P20</td>
<td align="left">Intrauterine hypoxia</td>
</tr>
<tr>
<td align="left">P24.0</td>
<td align="left">Neonatal aspiration of meconium</td>
</tr>
</tbody>
</table>
<h2>Iron deficiency anaemia</h2>
<h4>Implementation</h4>
~~~
At the specified date, a patient is defined as having had 'Iron deficiency anaemia' IF they meet the criteria for any of the following on or before the specified date. The earliest date on which the individual meets any of the following criteria on or before the specified date is defined as the first event date:
Primary care
1. 'Iron deficiency anaemia' diagnosis or history of diagnosis during a consultation
OR
Secondary care (ICD10)
1. ALL diagnoses of 'Iron deficiency anaemia' or history of diagnosis during a hospitalization
~~~
<h4>Primary care (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//primary_care/CPRD_IDA.csv'>CPRD_IDA.csv</a>)</h4>
<table>
<thead>
<tr>
<th>Read code</th>
<th>Read Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left">D000.00</td>
<td align="left">Iron deficiency anaemia due to chronic blood loss</td>
</tr>
<tr>
<td align="left">D000.11</td>
<td align="left">Normocytic anaemia due to chronic blood loss</td>
</tr>
<tr>
<td align="left">D000.12</td>
<td align="left">Iron deficiency anaemia due to blood loss</td>
</tr>
<tr>
<td align="left">D001.00</td>
<td align="left">Iron deficiency anaemia due to dietary causes</td>
</tr>
<tr>
<td align="left">D00..00</td>
<td align="left">Iron deficiency anaemias</td>
</tr>
<tr>
<td align="left">D00y000</td>
<td align="left">Sideropenic dysphagia</td>
</tr>
<tr>
<td align="left">D00y011</td>
<td align="left">Kelly-Paterson syndrome</td>
</tr>
<tr>
<td align="left">D00y012</td>
<td align="left">Plummer-Vinson syndrome</td>
</tr>
<tr>
<td align="left">D00y.00</td>
<td align="left">Other specified iron deficiency anaemia</td>
</tr>
<tr>
<td align="left">D00y.11</td>
<td align="left">Kelly - Paterson syndrome</td>
</tr>
<tr>
<td align="left">D00y.12</td>
<td align="left">Plummer - Vinson syndrome</td>
</tr>
<tr>
<td align="left">D00yz00</td>
<td align="left">Other specified iron deficiency anaemia NOS</td>
</tr>
<tr>
<td align="left">D00z000</td>
<td align="left">Achlorhydric anaemia</td>
</tr>
<tr>
<td align="left">D00z100</td>
<td align="left">Chlorotic anaemia</td>
</tr>
<tr>
<td align="left">D00z.00</td>
<td align="left">Unspecified iron deficiency anaemia</td>
</tr>
<tr>
<td align="left">D00zz00</td>
<td align="left">Iron deficiency anaemia NOS</td>
</tr>
<tr>
<td align="left">D0...11</td>
<td align="left">Asiderotic anaemia</td>
</tr>
<tr>
<td align="left">D0...12</td>
<td align="left">Sideropenic anaemia</td>
</tr>
<tr>
<td align="left">Dyu0000</td>
<td align="left">[X]Other iron deficiency anaemias</td>
</tr>
</tbody>
</table>
<h4>Secondary care diagnoses (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//secondary_care/ICD_IDA.csv'>ICD_IDA.csv</a>)</h4>
<table>
<thead>
<tr>
<th>ICD-10 code</th>
<th>ICD-10 Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left">D50</td>
<td align="left">Iron deficiency anaemia</td>
</tr>
</tbody>
</table>
<h2>Irritable bowel syndrome</h2>
<h4>Implementation</h4>
~~~
At the specified date, a patient is defined as having had 'Irritable bowel syndrome' IF they meet the criteria for any of the following on or before the specified date. The earliest date on which the individual meets any of the following criteria on or before the specified date is defined as the first event date:
Primary care
1. 'Irritable bowel syndrome' diagnosis or history of diagnosis or procedure during a consultation
OR
Secondary care
1. ALL diagnoses of 'Irritable bowel syndrome' or history of diagnosis during a hospitalization
~~~
<h4>Primary care (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//primary_care/CPRD_IBS.csv'>CPRD_IBS.csv</a>)</h4>
<table>
<thead>
<tr>
<th>Read code</th>
<th>Read Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left">14CF.00</td>
<td align="left">History of irritable bowel syndrome</td>
</tr>
<tr>
<td align="left">8Cm..00</td>
<td align="left">Management of irritable bowel syndrome</td>
</tr>
<tr>
<td align="left">J521000</td>
<td align="left">Irritable bowel syndrome with diarrhoea</td>
</tr>
<tr>
<td align="left">J521.00</td>
<td align="left">Irritable colon - Irritable bowel syndrome</td>
</tr>
<tr>
<td align="left">J521.11</td>
<td align="left">Irritable bowel syndrome</td>
</tr>
<tr>
<td align="left">J521.13</td>
<td align="left">Spastic colon</td>
</tr>
</tbody>
</table>
<h4>Secondary care diagnoses (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//secondary_care/ICD_IBS.csv'>ICD_IBS.csv</a>)</h4>
<table>
<thead>
<tr>
<th>ICD-10 code</th>
<th>ICD-10 Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left">K58</td>
<td align="left">Irritable bowel syndrome</td>
</tr>
</tbody>
</table>
<h2>Ischaemic stroke</h2>
<h4>Implementation</h4>
~~~
At the specified date, a patient is defined as having had an 'Ischaemic stroke' IF they meet the criteria for any of the following on or before the specified date. The earliest date on which the individual meets any of the following criteria on or before the specified date is defined as the first event date:
Primary care
1. 'Ischaemic stroke' diagnosis or history of diagnosis during a consultation
OR
Secondary care
1. ALL diagnoses of 'Ischaemic stroke' or sequelae of 'Ischaemic stroke' during a hospitalization
~~~
<h4>Primary care (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//primary_care/CPRD_Isch_stroke.csv'>CPRD_Isch_stroke.csv</a>)</h4>
<table>
<thead>
<tr>
<th>Read code</th>
<th>Read Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left">G63..11</td>
<td align="left">Infarction - precerebral</td>
</tr>
<tr>
<td align="left">G63y000</td>
<td align="left">Cerebral infarct due to thrombosis of precerebral arteries</td>
</tr>
<tr>
<td align="left">G63y100</td>
<td align="left">Cerebral infarction due to embolism of precerebral arteries</td>
</tr>
<tr>
<td align="left">G640000</td>
<td align="left">Cerebral infarction due to thrombosis of cerebral arteries</td>
</tr>
<tr>
<td align="left">G640.00</td>
<td align="left">Cerebral thrombosis</td>
</tr>
<tr>
<td align="left">G641000</td>
<td align="left">Cerebral infarction due to embolism of cerebral arteries</td>
</tr>
<tr>
<td align="left">G641.00</td>
<td align="left">Cerebral embolism</td>
</tr>
<tr>
<td align="left">G641.11</td>
<td align="left">Cerebral embolus</td>
</tr>
<tr>
<td align="left">G64..00</td>
<td align="left">Cerebral arterial occlusion</td>
</tr>
<tr>
<td align="left">G64..11</td>
<td align="left">CVA - cerebral artery occlusion</td>
</tr>
<tr>
<td align="left">G64..12</td>
<td align="left">Infarction - cerebral</td>
</tr>
<tr>
<td align="left">G64..13</td>
<td align="left">Stroke due to cerebral arterial occlusion</td>
</tr>
<tr>
<td align="left">G64z000</td>
<td align="left">Brainstem infarction</td>
</tr>
<tr>
<td align="left">G64z100</td>
<td align="left">Wallenberg syndrome</td>
</tr>
<tr>
<td align="left">G64z111</td>
<td align="left">Lateral medullary syndrome</td>
</tr>
<tr>
<td align="left">G64z200</td>
<td align="left">Left sided cerebral infarction</td>
</tr>
<tr>
<td align="left">G64z300</td>
<td align="left">Right sided cerebral infarction</td>
</tr>
<tr>
<td align="left">G64z400</td>
<td align="left">Infarction of basal ganglia</td>
</tr>
<tr>
<td align="left">G64z.00</td>
<td align="left">Cerebral infarction NOS</td>
</tr>
<tr>
<td align="left">G64z.11</td>
<td align="left">Brainstem infarction NOS</td>
</tr>
<tr>
<td align="left">G64z.12</td>
<td align="left">Cerebellar infarction</td>
</tr>
<tr>
<td align="left">G683.00</td>
<td align="left">Sequelae of cerebral infarction</td>
</tr>
<tr>
<td align="left">G6W..00</td>
<td align="left">Cereb infarct due unsp occlus/stenos precerebr arteries</td>
</tr>
<tr>
<td align="left">G6X..00</td>
<td align="left">Cerebrl infarctn due/unspcf occlusn or sten/cerebrl artrs</td>
</tr>
<tr>
<td align="left">Gyu6300</td>
<td align="left">[X]Cerebrl infarctn due/unspcf occlusn or sten/cerebrl artrs</td>
</tr>
<tr>
<td align="left">Gyu6400</td>
<td align="left">[X]Other cerebral infarction</td>
</tr>
<tr>
<td align="left">Gyu6G00</td>
<td align="left">[X]Cereb infarct due unsp occlus/stenos precerebr arteries</td>
</tr>
</tbody>
</table>
<h4>Secondary care diagnoses (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//secondary_care/ICD_Isch_stroke.csv'>ICD_Isch_stroke.csv</a>)</h4>
<table>
<thead>
<tr>
<th>ICD-10 code</th>
<th>ICD-10 Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left">I63.0</td>
<td align="left">Cerebral infarction due to thrombosis of precerebral arteries</td>
</tr>
<tr>
<td align="left">I63.1</td>
<td align="left">Cerebral infarction due to embolism of precerebral arteries</td>
</tr>
<tr>
<td align="left">I63.2</td>
<td align="left">Cerebral infarction due to unspecified occlusion or stenosis of precerebral arteries</td>
</tr>
<tr>
<td align="left">I63.3</td>
<td align="left">Cerebral infarction due to thrombosis of cerebral arteries</td>
</tr>
<tr>
<td align="left">I63.4</td>
<td align="left">Cerebral infarction due to embolism of cerebral arteries</td>
</tr>
<tr>
<td align="left">I63.5</td>
<td align="left">Cerebral infarction due to unspecified occlusion or stenosis of cerebral arteries</td>
</tr>
<tr>
<td align="left">I63.8</td>
<td align="left">Other cerebral infarction</td>
</tr>
<tr>
<td align="left">I63.9</td>
<td align="left">Cerebral infarction, unspecified</td>
</tr>
<tr>
<td align="left">I69.3</td>
<td align="left">Sequelae of cerebral infarction</td>
</tr>
</tbody>
</table>
<h2>Juvenile arthritis</h2>
<h4>Implementation</h4>
~~~
At the specified date, a patient is defined as having had 'Juvenile arthritis' IF they meet the criteria for any of the following on or before the specified date. The earliest date on which the individual meets any of the following criteria on or before the specified date is defined as the first event date:
Primary care
1. 'Juvenile arthritis' diagnosis or history of diagnosis during a consultation
OR
Secondary care (ICD10)
1. ALL diagnoses of 'Juvenile arthritis' or history of diagnosis during a hospitalization
~~~
<h4>Primary care (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//primary_care/CPRD_juv_arth.csv'>CPRD_juv_arth.csv</a>)</h4>
<table>
<thead>
<tr>
<th>Read code</th>
<th>Read Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left">N043000</td>
<td align="left">Juvenile rheumatoid arthropathy unspecified</td>
</tr>
<tr>
<td align="left">N043100</td>
<td align="left">Acute polyarticular juvenile rheumatoid arthritis</td>
</tr>
<tr>
<td align="left">N043200</td>
<td align="left">Pauciarticular juvenile rheumatoid arthritis</td>
</tr>
<tr>
<td align="left">N043300</td>
<td align="left">Monarticular juvenile rheumatoid arthritis</td>
</tr>
<tr>
<td align="left">N043.00</td>
<td align="left">Juvenile rheumatoid arthritis - Still's disease</td>
</tr>
<tr>
<td align="left">N043z00</td>
<td align="left">Juvenile rheumatoid arthritis NOS</td>
</tr>
<tr>
<td align="left">N045000</td>
<td align="left">Juvenile ankylosing spondylitis</td>
</tr>
<tr>
<td align="left">N045100</td>
<td align="left">Juvenile seronegative polyarthritis</td>
</tr>
<tr>
<td align="left">N045200</td>
<td align="left">Juvenile arthritis in psoriasis</td>
</tr>
<tr>
<td align="left">N045300</td>
<td align="left">Juvenile arthritis in Crohn's disease</td>
</tr>
<tr>
<td align="left">N045400</td>
<td align="left">Juvenile arthritis in ulcerative colitis</td>
</tr>
<tr>
<td align="left">N045500</td>
<td align="left">Juvenile rheumatoid arthritis</td>
</tr>
<tr>
<td align="left">N045600</td>
<td align="left">Pauciarticular onset juvenile chronic arthritis</td>
</tr>
<tr>
<td align="left">N045.00</td>
<td align="left">Other juvenile arthritis</td>
</tr>
<tr>
<td align="left">Nyu1500</td>
<td align="left">[X]Other juvenile arthritis</td>
</tr>
</tbody>
</table>
<h4>Secondary care diagnoses (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//secondary_care/ICD_juv_arth.csv'>ICD_juv_arth.csv</a>)</h4>
<table>
<thead>
<tr>
<th>ICD-10 code</th>
<th>ICD-10 Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left">M08</td>
<td align="left">Juvenile arthritis</td>
</tr>
<tr>
<td align="left">M09</td>
<td align="left">Juvenile arthritis in diseases classified elsewhere</td>
</tr>
</tbody>
</table>
<h2>Keratitis</h2>
<h4>Implementation</h4>
~~~
At the specified date, a patient is defined as having had 'Keratitis' IF they meet the criteria for any of the following on or before the specified date. The earliest date on which the individual meets any of the following criteria on or before the specified date is defined as the first event date:
Primary care
1. 'Keratitis' diagnosis or history of diagnosis during a consultation
OR
Secondary care
1. ALL diagnoses of 'Keratitis' or history of diagnosis during a hospitalization
~~~
<h4>Primary care (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//primary_care/CPRD_keratitis.csv'>CPRD_keratitis.csv</a>)</h4>
<table>
<thead>
<tr>
<th>Read code</th>
<th>Read Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left">A173200</td>
<td align="left">Tuberculous interstitial keratitis</td>
</tr>
<tr>
<td align="left">A173400</td>
<td align="left">Tuberculous keratoconjunctivitis</td>
</tr>
<tr>
<td align="left">A532100</td>
<td align="left">Herpes zoster with keratoconjunctivitis</td>
</tr>
<tr>
<td align="left">A544200</td>
<td align="left">Herpes simplex dendritic keratitis</td>
</tr>
<tr>
<td align="left">A544300</td>
<td align="left">Herpes simplex disciform keratitis</td>
</tr>
<tr>
<td align="left">A55x000</td>
<td align="left">Measles keratoconjunctivitis</td>
</tr>
<tr>
<td align="left">A771.00</td>
<td align="left">Epidemic keratoconjunctivitis</td>
</tr>
<tr>
<td align="left">A776.00</td>
<td align="left">Keratoconjunctivitis due to adenovirus</td>
</tr>
<tr>
<td align="left">A903.00</td>
<td align="left">Syphilitic interstitial keratitis</td>
</tr>
<tr>
<td align="left">A984300</td>
<td align="left">Gonococcal keratitis</td>
</tr>
<tr>
<td align="left">AD67000</td>
<td align="left">Acanthamoeba keratitis</td>
</tr>
<tr>
<td align="left">F4A1.00</td>
<td align="left">Dendritic keratitis</td>
</tr>
<tr>
<td align="left">F4A2000</td>
<td align="left">Unspecified superficial keratitis</td>
</tr>
<tr>
<td align="left">F4A2100</td>
<td align="left">Punctate keratitis</td>
</tr>
<tr>
<td align="left">F4A2112</td>
<td align="left">Thygeson's superficial punctate keratitis</td>
</tr>
<tr>
<td align="left">F4A2200</td>
<td align="left">Nummular keratitis</td>
</tr>
<tr>
<td align="left">F4A2300</td>
<td align="left">Striate keratitis</td>
</tr>
<tr>
<td align="left">F4A2400</td>
<td align="left">Macular keratitis NOS</td>
</tr>
<tr>
<td align="left">F4A2500</td>
<td align="left">Filamentary keratitis</td>
</tr>
<tr>
<td align="left">F4A2.00</td>
<td align="left">Other superficial keratitis without conjunctivitis</td>
</tr>
<tr>
<td align="left">F4A2z00</td>
<td align="left">Other superficial keratitis without conjunctivitis NOS</td>
</tr>
<tr>
<td align="left">F4A3000</td>
<td align="left">Phlyctenular keratoconjunctivitis</td>
</tr>
<tr>
<td align="left">F4A3300</td>
<td align="left">Exposure keratoconjunctivitis</td>
</tr>
<tr>
<td align="left">F4A3400</td>
<td align="left">Neurotrophic keratoconjunctivitis</td>
</tr>
<tr>
<td align="left">F4A3.00</td>
<td align="left">Specific keratoconjunctivitis</td>
</tr>
<tr>
<td align="left">F4A3z00</td>
<td align="left">Specific keratoconjunctivitis NOS</td>
</tr>
<tr>
<td align="left">F4A4000</td>
<td align="left">Unspecified keratoconjunctivitis</td>
</tr>
<tr>
<td align="left">F4A4100</td>
<td align="left">Keratitis or keratoconjunctivitis in other exanthemata</td>
</tr>
<tr>
<td align="left">F4A4.00</td>
<td align="left">Other keratoconjunctivitis</td>
</tr>
<tr>
<td align="left">F4A4z00</td>
<td align="left">Other keratoconjunctivitis NOS</td>
</tr>
<tr>
<td align="left">F4A5000</td>
<td align="left">Unspecified interstitial keratitis</td>
</tr>
<tr>
<td align="left">F4A5100</td>
<td align="left">Diffuse interstitial keratitis</td>
</tr>
<tr>
<td align="left">F4A5200</td>
<td align="left">Sclerosing keratitis</td>
</tr>
<tr>
<td align="left">F4A5400</td>
<td align="left">Keratitis due to syphilis</td>
</tr>
<tr>
<td align="left">F4A5500</td>
<td align="left">Keratitis due to tuberculosis</td>
</tr>
<tr>
<td align="left">F4A5.00</td>
<td align="left">Interstitial and deep keratitis</td>
</tr>
<tr>
<td align="left">F4A5z00</td>
<td align="left">Interstitial and deep keratitis NOS</td>
</tr>
<tr>
<td align="left">F4A..00</td>
<td align="left">Keratitis</td>
</tr>
<tr>
<td align="left">F4A..11</td>
<td align="left">Keratoconjunctivitis</td>
</tr>
<tr>
<td align="left">F4Ay.00</td>
<td align="left">Other forms of keratitis</td>
</tr>
<tr>
<td align="left">F4Az.00</td>
<td align="left">Keratitis NOS</td>
</tr>
<tr>
<td align="left">FyuD100</td>
<td align="left">[X]Other superficial keratitis without conjunctivitis</td>
</tr>
<tr>
<td align="left">FyuD200</td>
<td align="left">[X]Other keratitis</td>
</tr>
<tr>
<td align="left">FyuDA00</td>
<td align="left">[X]Keratitis+keratoconjunctivitis in other diseases CE</td>
</tr>
</tbody>
</table>
<h4>Secondary care diagnoses (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//secondary_care/ICD_keratitis.csv'>ICD_keratitis.csv</a>)</h4>
<table>
<thead>
<tr>
<th>ICD-10 code</th>
<th>ICD-10 Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left">H16</td>
<td align="left">Keratitis</td>
</tr>
<tr>
<td align="left">H19.1</td>
<td align="left">Herpesviral keratitis and keratoconjunctivitis</td>
</tr>
<tr>
<td align="left">H19.2</td>
<td align="left">Keratitis and keratoconjunctivitis in other infectious and parasitic diseases classified elsewhere</td>
</tr>
<tr>
<td align="left">H19.3</td>
<td align="left">Keratitis and keratoconjunctivitis in other diseases classified elsewhere</td>
</tr>
</tbody>
</table>
<h2>Left bundle branch block</h2>
<h4>Implementation</h4>
~~~
At the specified date, a patient is defined as having had 'Left bundle branch block' IF they meet the criteria for any of the following on or before the specified date. The earliest date on which the individual meets any of the following criteria on or before the specified date is defined as the first event date:
Primary care
1. 'Left bundle branch block' diagnosis or history of diagnosis during a consultation
OR
Secondary care (ICD10)
1. ALL diagnoses of 'Left bundle branch block' or history of diagnosis during a hospitalization
~~~
<h4>Primary care (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//primary_care/CPRD_LBBB.csv'>CPRD_LBBB.csv</a>)</h4>
<table>
<thead>
<tr>
<th>Read code</th>
<th>Read Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left">329A.00</td>
<td align="left">ECG: left bundle branch block</td>
</tr>
<tr>
<td align="left">G562.11</td>
<td align="left">Left bundle branch block</td>
</tr>
<tr>
<td align="left">G563.00</td>
<td align="left">Left main stem bundle branch block</td>
</tr>
</tbody>
</table>
<h4>Secondary care diagnoses (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//secondary_care/ICD_LBBB.csv'>ICD_LBBB.csv</a>)</h4>
<table>
<thead>
<tr>
<th>ICD-10 code</th>
<th>ICD-10 Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left">I44.7</td>
<td align="left">Left bundle-branch block, unspecified</td>
</tr>
</tbody>
</table>
<h2>Leiomyoma of uterus</h2>
<h4>Implementation</h4>
~~~
At the specified date, a patient is defined as having had 'Leiomyoma of uterus' of uterus IF they meet the criteria for any of the following on or before the specified date. The earliest date on which the individual meets any of the following criteria on or before the specified date is defined as the first event date:
Primary care
1. 'Leiomyoma of uterus' of uterus diagnosis or history of diagnosis during a consultation
OR
Secondary care
1. ALL diagnoses of 'Leiomyoma of uterus' of uterus or history of diagnosis during a hospitalization
~~~
<h4>Primary care (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//primary_care/CPRD_leiomyoma.csv'>CPRD_leiomyoma.csv</a>)</h4>
<table>
<thead>
<tr>
<th>Read code</th>
<th>Read Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left">7A54A00</td>
<td align="left">Perc embolisation of uterine fibroid using fluoroscopic guid</td>
</tr>
<tr>
<td align="left">7E06111</td>
<td align="left">Excision fibroid</td>
</tr>
<tr>
<td align="left">7E0DC00</td>
<td align="left">Transcervical resection of fibroid</td>
</tr>
<tr>
<td align="left">B780.00</td>
<td align="left">Submucous uterine leiomyoma</td>
</tr>
<tr>
<td align="left">B781.00</td>
<td align="left">Intramural uterine leiomyoma</td>
</tr>
<tr>
<td align="left">B781.11</td>
<td align="left">Mural fibroids</td>
</tr>
<tr>
<td align="left">B782.00</td>
<td align="left">Subserous uterine leiomyoma</td>
</tr>
<tr>
<td align="left">B78..00</td>
<td align="left">Uterine leiomyoma - fibroids</td>
</tr>
<tr>
<td align="left">B78..11</td>
<td align="left">Fibroids</td>
</tr>
<tr>
<td align="left">B78z.00</td>
<td align="left">Uterine leiomyoma NOS</td>
</tr>
<tr>
<td align="left">BBK0000</td>
<td align="left">[M]Leiomyoma NOS</td>
</tr>
<tr>
<td align="left">BBK0011</td>
<td align="left">[M]Fibroid uterus</td>
</tr>
<tr>
<td align="left">BBK0300</td>
<td align="left">[M]Epithelioid leiomyoma</td>
</tr>
<tr>
<td align="left">BBK0500</td>
<td align="left">[M]Cellular leiomyoma</td>
</tr>
<tr>
<td align="left">BBK0600</td>
<td align="left">[M]Bizarre leiomyoma</td>
</tr>
<tr>
<td align="left">BBK0.00</td>
<td align="left">[M]Leiomyomatous neoplasms</td>
</tr>
<tr>
<td align="left">BBK0z00</td>
<td align="left">[M]Leiomyomatous neoplasm NOS</td>
</tr>
</tbody>
</table>
<h4>Secondary care diagnoses (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//secondary_care/ICD_leiomyoma.csv'>ICD_leiomyoma.csv</a>)</h4>
<table>
<thead>
<tr>
<th>ICD-10 code</th>
<th>ICD-10 Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left">D25</td>
<td align="left">Leiomyoma of uterus</td>
</tr>
</tbody>
</table>
<h2>Leukaemia</h2>
<h4>Implementation</h4>
~~~
At the specified date, a patient is defined as having had 'Leukaemia' IF they meet the criteria for any of the following on or before the specified date. The earliest date on which the individual meets any of the following criteria on or before the specified date is defined as the first event date:
Primary care
1. 'Leukaemia' diagnosis or history of diagnosis during a consultation
OR
Secondary care
1. ALL diagnoses of 'Leukaemia' or history of diagnosis during a hospitalization
~~~
<h4>Primary care (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//primary_care/CPRD_leukaemia.csv'>CPRD_leukaemia.csv</a>)</h4>
<table>
<thead>
<tr>
<th>Read code</th>
<th>Read Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="right">1429</td>
<td align="left">H/O: * leukaemia</td>
</tr>
<tr>
<td align="left">B624000</td>
<td align="left">Leukaemic reticuloendotheliosis of unspecified sites</td>
</tr>
<tr>
<td align="left">B624300</td>
<td align="left">Leukaemic reticuloend of intra-abdominal lymph nodes</td>
</tr>
<tr>
<td align="left">B624.00</td>
<td align="left">Leukaemic reticuloendotheliosis</td>
</tr>
<tr>
<td align="left">B624.11</td>
<td align="left">Leukaemic reticuloendotheliosis</td>
</tr>
<tr>
<td align="left">B624.12</td>
<td align="left">Hairy cell leukaemia</td>
</tr>
<tr>
<td align="left">B624z00</td>
<td align="left">Leukaemic reticuloendotheliosis NOS</td>
</tr>
<tr>
<td align="left">B640000</td>
<td align="left">B-cell acute lymphoblastic leukaemia</td>
</tr>
<tr>
<td align="left">B640.00</td>
<td align="left">Acute lymphoid leukaemia</td>
</tr>
<tr>
<td align="left">B641000</td>
<td align="left">B-cell chronic lymphocytic leukaemia</td>
</tr>
<tr>
<td align="left">B641011</td>
<td align="left">Chronic lymphocytic leukaemia of B-cell type</td>
</tr>
<tr>
<td align="left">B641100</td>
<td align="left">Clinical stage A chronic lymphocytic leukaemia</td>
</tr>
<tr>
<td align="left">B641200</td>
<td align="left">Clinical stage B chronic lymphocytic leukaemia</td>
</tr>
<tr>
<td align="left">B641300</td>
<td align="left">Clinical stage C chronic lymphocytic leukaemia</td>
</tr>
<tr>
<td align="left">B641.00</td>
<td align="left">Chronic lymphoid leukaemia</td>
</tr>
<tr>
<td align="left">B641.11</td>
<td align="left">Chronic lymphatic leukaemia</td>
</tr>
<tr>
<td align="left">B642.00</td>
<td align="left">Subacute lymphoid leukaemia</td>
</tr>
<tr>
<td align="left">B64..00</td>
<td align="left">Lymphoid leukaemia</td>
</tr>
<tr>
<td align="left">B64..11</td>
<td align="left">Lymphatic leukaemia</td>
</tr>
<tr>
<td align="left">B64y100</td>
<td align="left">Prolymphocytic leukaemia</td>
</tr>
<tr>
<td align="left">B64y200</td>
<td align="left">Adult T-cell leukaemia</td>
</tr>
<tr>
<td align="left">B64y300</td>
<td align="left">B-cell prolymphocytic leukaemia</td>
</tr>
<tr>
<td align="left">B64y400</td>
<td align="left">T-cell prolymphocytic leukaemia</td>
</tr>
<tr>
<td align="left">B64y500</td>
<td align="left">Adult T-cell lymphoma/leukaemia (HTLV-1-associated)</td>
</tr>
<tr>
<td align="left">B64y.00</td>
<td align="left">Other lymphoid leukaemia</td>
</tr>
<tr>
<td align="left">B64yz00</td>
<td align="left">Other lymphoid leukaemia NOS</td>
</tr>
<tr>
<td align="left">B64z.00</td>
<td align="left">Lymphoid leukaemia NOS</td>
</tr>
<tr>
<td align="left">B650.00</td>
<td align="left">Acute myeloid leukaemia</td>
</tr>
<tr>
<td align="left">B651100</td>
<td align="left">Chronic myeloid leukaemia, BCR/ABL positive</td>
</tr>
<tr>
<td align="left">B651200</td>
<td align="left">Chronic neutrophilic leukaemia</td>
</tr>
<tr>
<td align="left">B651300</td>
<td align="left">Atypical chronic myeloid leukaemia, BCR/ABL negative</td>
</tr>
<tr>
<td align="left">B651.00</td>
<td align="left">Chronic myeloid leukaemia</td>
</tr>
<tr>
<td align="left">B651.11</td>
<td align="left">Chronic granulocytic leukaemia</td>
</tr>
<tr>
<td align="left">B651z00</td>
<td align="left">Chronic myeloid leukaemia NOS</td>
</tr>
<tr>
<td align="left">B652.00</td>
<td align="left">Subacute myeloid leukaemia</td>
</tr>
<tr>
<td align="left">B653000</td>
<td align="left">Chloroma</td>
</tr>
<tr>
<td align="left">B653100</td>
<td align="left">Granulocytic sarcoma</td>
</tr>
<tr>
<td align="left">B653.00</td>
<td align="left">Myeloid sarcoma</td>
</tr>
<tr>
<td align="left">B654.00</td>
<td align="left">Acute myeloblastic leukaemia</td>
</tr>
<tr>
<td align="left">B65..00</td>
<td align="left">Myeloid leukaemia</td>
</tr>
<tr>
<td align="left">B65y100</td>
<td align="left">Acute promyelocytic leukaemia</td>
</tr>
<tr>
<td align="left">B65yz00</td>
<td align="left">Other myeloid leukaemia NOS</td>
</tr>
<tr>
<td align="left">B65z.00</td>
<td align="left">Myeloid leukaemia NOS</td>
</tr>
<tr>
<td align="left">B660.00</td>
<td align="left">Acute monocytic leukaemia</td>
</tr>
<tr>
<td align="left">B661.00</td>
<td align="left">Chronic monocytic leukaemia</td>
</tr>
<tr>
<td align="left">B662.00</td>
<td align="left">Subacute monocytic leukaemia</td>
</tr>
<tr>
<td align="left">B663.00</td>
<td align="left">Acute monoblastic leukaemia</td>
</tr>
<tr>
<td align="left">B66..00</td>
<td align="left">Monocytic leukaemia</td>
</tr>
<tr>
<td align="left">B66..11</td>
<td align="left">Histiocytic leukaemia</td>
</tr>
<tr>
<td align="left">B66..12</td>
<td align="left">Monoblastic leukaemia</td>
</tr>
<tr>
<td align="left">B66y.00</td>
<td align="left">Other monocytic leukaemia</td>
</tr>
<tr>
<td align="left">B66yz00</td>
<td align="left">Other monocytic leukaemia NOS</td>
</tr>
<tr>
<td align="left">B66z.00</td>
<td align="left">Monocytic leukaemia NOS</td>
</tr>
<tr>
<td align="left">B670.00</td>
<td align="left">Acute erythraemia and erythroleukaemia</td>
</tr>
<tr>
<td align="left">B670.11</td>
<td align="left">Di Guglielmo's disease</td>
</tr>
<tr>
<td align="left">B672.00</td>
<td align="left">Megakaryocytic leukaemia</td>
</tr>
<tr>
<td align="left">B672.11</td>
<td align="left">Thrombocytic leukaemia</td>
</tr>
<tr>
<td align="left">B673.00</td>
<td align="left">Mast cell leukaemia</td>
</tr>
<tr>
<td align="left">B674.00</td>
<td align="left">Acute panmyelosis</td>
</tr>
<tr>
<td align="left">B675.00</td>
<td align="left">Acute myelofibrosis</td>
</tr>
<tr>
<td align="left">B677.00</td>
<td align="left">Myelodysplastic and myeloproliferative disease</td>
</tr>
<tr>
<td align="left">B67..00</td>
<td align="left">Other specified leukaemia</td>
</tr>
<tr>
<td align="left">B67y000</td>
<td align="left">Lymphosarcoma cell leukaemia</td>
</tr>
<tr>
<td align="left">B67y.00</td>
<td align="left">Other and unspecified leukaemia</td>
</tr>
<tr>
<td align="left">B67yz00</td>
<td align="left">Other and unspecified leukaemia NOS</td>
</tr>
<tr>
<td align="left">B67z.00</td>
<td align="left">Other specified leukaemia NOS</td>
</tr>
<tr>
<td align="left">B680.00</td>
<td align="left">Acute leukaemia NOS</td>
</tr>
<tr>
<td align="left">B681.00</td>
<td align="left">Chronic leukaemia NOS</td>
</tr>
<tr>
<td align="left">B682.00</td>
<td align="left">Subacute leukaemia NOS</td>
</tr>
<tr>
<td align="left">B68..00</td>
<td align="left">Leukaemia of unspecified cell type</td>
</tr>
<tr>
<td align="left">B68y.00</td>
<td align="left">Other leukaemia of unspecified cell type</td>
</tr>
<tr>
<td align="left">B68z.00</td>
<td align="left">Leukaemia NOS</td>
</tr>
<tr>
<td align="left">B690.00</td>
<td align="left">Acute myelomonocytic leukaemia</td>
</tr>
<tr>
<td align="left">B691.00</td>
<td align="left">Chronic myelomonocytic leukaemia</td>
</tr>
<tr>
<td align="left">B692.00</td>
<td align="left">Subacute myelomonocytic leukaemia</td>
</tr>
<tr>
<td align="left">B693.00</td>
<td align="left">Juvenile myelomonocytic leukaemia</td>
</tr>
<tr>
<td align="left">B69..00</td>
<td align="left">Myelomonocytic leukaemia</td>
</tr>
<tr>
<td align="left">BBr0000</td>
<td align="left">[M]Leukaemia NOS</td>
</tr>
<tr>
<td align="left">BBr0100</td>
<td align="left">[M]Acute leukaemia NOS</td>
</tr>
<tr>
<td align="left">BBr0111</td>
<td align="left">[M]Blast cell leukaemia</td>
</tr>
<tr>
<td align="left">BBr0112</td>
<td align="left">[M]Blastic leukaemia</td>
</tr>
<tr>
<td align="left">BBr0113</td>
<td align="left">[M]Stem cell leukaemia</td>
</tr>
<tr>
<td align="left">BBr0200</td>
<td align="left">[M]Subacute leukaemia NOS</td>
</tr>
<tr>
<td align="left">BBr0300</td>
<td align="left">[M]Chronic leukaemia NOS</td>
</tr>
<tr>
<td align="left">BBr0400</td>
<td align="left">[M]Aleukaemic leukaemia NOS</td>
</tr>
<tr>
<td align="left">BBr0.00</td>
<td align="left">[M]Leukaemias unspecified</td>
</tr>
<tr>
<td align="left">BBr0z00</td>
<td align="left">[M]Leukaemia unspecified, NOS</td>
</tr>
<tr>
<td align="left">BBr2000</td>
<td align="left">[M]Lymphoid leukaemia NOS</td>
</tr>
<tr>
<td align="left">BBr2011</td>
<td align="left">[M]Lymphatic leukaemia</td>
</tr>
<tr>
<td align="left">BBr2100</td>
<td align="left">[M]Acute lymphoid leukaemia</td>
</tr>
<tr>
<td align="left">BBr2300</td>
<td align="left">[M]Chronic lymphoid leukaemia</td>
</tr>
<tr>
<td align="left">BBr2500</td>
<td align="left">[M]Prolymphocytic leukaemia</td>
</tr>
<tr>
<td align="left">BBr2600</td>
<td align="left">[M]Burkitt's cell leukaemia</td>
</tr>
<tr>
<td align="left">BBr2700</td>
<td align="left">[M]Adult T-cell leukaemia/lymphoma</td>
</tr>
<tr>
<td align="left">BBr2.00</td>
<td align="left">[M]Lymphoid leukaemias</td>
</tr>
<tr>
<td align="left">BBr4000</td>
<td align="left">[M]Erythroleukaemia</td>
</tr>
<tr>
<td align="left">BBr4.00</td>
<td align="left">[M]Erythroleukaemias</td>
</tr>
<tr>
<td align="left">BBr4z00</td>
<td align="left">[M]Erythroleukaemia NOS</td>
</tr>
<tr>
<td align="left">BBr6000</td>
<td align="left">[M]Myeloid leukaemia NOS</td>
</tr>
<tr>
<td align="left">BBr6011</td>
<td align="left">[M]Granulocytic leukaemia NOS</td>
</tr>
<tr>
<td align="left">BBr6100</td>
<td align="left">[M]Acute myeloid leukaemia</td>
</tr>
<tr>
<td align="left">BBr6200</td>
<td align="left">[M]Subacute myeloid leukaemia</td>
</tr>
<tr>
<td align="left">BBr6300</td>
<td align="left">[M]Chronic myeloid leukaemia</td>
</tr>
<tr>
<td align="left">BBr6311</td>
<td align="left">[M]Naegeli-type monocytic leukaemia</td>
</tr>
<tr>
<td align="left">BBr6600</td>
<td align="left">[M]Acute promyelocytic leukaemia</td>
</tr>
<tr>
<td align="left">BBr6700</td>
<td align="left">[M]Acute myelomonocytic leukaemia</td>
</tr>
<tr>
<td align="left">BBr6800</td>
<td align="left">[M]Chronic myelomonocytic leukaemia</td>
</tr>
<tr>
<td align="left">BBr6900</td>
<td align="left">[M]Juvenile myelomonocytic leukaemia</td>
</tr>
<tr>
<td align="left">BBr6.00</td>
<td align="left">[M]Myeloid leukaemias</td>
</tr>
<tr>
<td align="left">BBr6z00</td>
<td align="left">[M]Other myeloid leukaemia NOS</td>
</tr>
<tr>
<td align="left">BBr7000</td>
<td align="left">[M]Basophilic leukaemia</td>
</tr>
<tr>
<td align="left">BBr9000</td>
<td align="left">[M]Monocytic leukaemia NOS</td>
</tr>
<tr>
<td align="left">BBrA100</td>
<td align="left">[M]Megakaryocytic leukaemia</td>
</tr>
<tr>
<td align="left">BBrA111</td>
<td align="left">[M]Thrombocytic leukaemia</td>
</tr>
<tr>
<td align="left">BBrA400</td>
<td align="left">[M]Hairy cell leukaemia</td>
</tr>
<tr>
<td align="left">BBrA500</td>
<td align="left">[M]Acute megakaryoblastic leukaemia</td>
</tr>
<tr>
<td align="left">BBrA.00</td>
<td align="left">[M]Miscellaneous leukaemias</td>
</tr>
<tr>
<td align="left">BBrAz00</td>
<td align="left">[M]Miscellaneous leukaemia NOS</td>
</tr>
<tr>
<td align="left">BBr..00</td>
<td align="left">[M]Leukaemias</td>
</tr>
<tr>
<td align="left">BBrz.00</td>
<td align="left">[M]Leukaemia NOS</td>
</tr>
<tr>
<td align="left">ByuD500</td>
<td align="left">[X]Other lymphoid leukaemia</td>
</tr>
<tr>
<td align="left">ByuD600</td>
<td align="left">[X]Other myeloid leukaemia</td>
</tr>
<tr>
<td align="left">ByuD700</td>
<td align="left">[X]Other monocytic leukaemia</td>
</tr>
<tr>
<td align="left">ByuD800</td>
<td align="left">[X]Other specified leukaemias</td>
</tr>
<tr>
<td align="left">ByuD900</td>
<td align="left">[X]Other leukaemia of unspecified cell type</td>
</tr>
<tr>
<td align="left">ZV10600</td>
<td align="left">[V]Personal history of leukaemia</td>
</tr>
<tr>
<td align="left">ZV10611</td>
<td align="left">[V]Personal history of lymphoid leukaemia</td>
</tr>
<tr>
<td align="left">ZV10613</td>
<td align="left">[V]Personal history of myeloid leukaemia</td>
</tr>
<tr>
<td align="left">ZV67811</td>
<td align="left">[V]Follow-up examination after chemotherapy for leukaemia</td>
</tr>
</tbody>
</table>
<h4>Secondary care diagnoses (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//secondary_care/ICD_leukaemia.csv'>ICD_leukaemia.csv</a>)</h4>
<table>
<thead>
<tr>
<th>ICD-10 code</th>
<th>ICD-10 Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left">C91</td>
<td align="left">Lymphoid leukaemia</td>
</tr>
<tr>
<td align="left">C92</td>
<td align="left">Myeloid leukaemia</td>
</tr>
<tr>
<td align="left">C93</td>
<td align="left">Monocytic leukaemia</td>
</tr>
<tr>
<td align="left">C94</td>
<td align="left">Other leukaemias of specified cell type</td>
</tr>
<tr>
<td align="left">C95</td>
<td align="left">Leukaemia of unspecified cell type</td>
</tr>
</tbody>
</table>
<h2>Lichen planus</h2>
<h4>Implementation</h4>
~~~
At the specified date, a patient is defined as having had 'Lichen planus' IF they meet the criteria for any of the following on or before the specified date. The earliest date on which the individual meets any of the following criteria on or before the specified date is defined as the first event date:
Primary care
1. 'Lichen planus' diagnosis or history of diagnosis during a consultation
OR
Secondary care (ICD10)
1. ALL diagnoses of 'Lichen planus' or history of diagnosis during a hospitalization
~~~
<h4>Primary care (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//primary_care/CPRD_lichen_planus.csv'>CPRD_lichen_planus.csv</a>)</h4>
<table>
<thead>
<tr>
<th>Read code</th>
<th>Read Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left">M170000</td>
<td align="left">Lichen planus actinicus</td>
</tr>
<tr>
<td align="left">M170100</td>
<td align="left">Lichen planus annularis</td>
</tr>
<tr>
<td align="left">M170200</td>
<td align="left">Lichen planus atrophicus</td>
</tr>
<tr>
<td align="left">M170300</td>
<td align="left">Lichen planus bullosus</td>
</tr>
<tr>
<td align="left">M170400</td>
<td align="left">Lichen planus hypertrophicus</td>
</tr>
<tr>
<td align="left">M170500</td>
<td align="left">Lichen planus linearis</td>
</tr>
<tr>
<td align="left">M170700</td>
<td align="left">Lichen planus obtusus</td>
</tr>
<tr>
<td align="left">M170800</td>
<td align="left">Subacute active lichen planus</td>
</tr>
<tr>
<td align="left">M170900</td>
<td align="left">Follicular lichen planus</td>
</tr>
<tr>
<td align="left">M170.00</td>
<td align="left">Lichen planus</td>
</tr>
<tr>
<td align="left">M170z00</td>
<td align="left">Lichen planus NOS</td>
</tr>
<tr>
<td align="left">M240R00</td>
<td align="left">Lichen planopilaris</td>
</tr>
<tr>
<td align="left">Myu3200</td>
<td align="left">[X]Other lichen planus</td>
</tr>
</tbody>
</table>
<h4>Secondary care diagnoses (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//secondary_care/ICD_lichen_planus.csv'>ICD_lichen_planus.csv</a>)</h4>
<table>
<thead>
<tr>
<th>ICD-10 code</th>
<th>ICD-10 Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left">L43</td>
<td align="left">Lichen planus</td>
</tr>
<tr>
<td align="left">L66.1</td>
<td align="left">Lichen planopilaris</td>
</tr>
</tbody>
</table>
<h2>Liver fibrosis, sclerosis and cirrhosis</h2>
<h4>Implementation</h4>
~~~
At the specified date, a patient is defined as having had Liver fibrosis, sclerosis and 'Liver fibrosis, sclerosis and cirrhosis' IF they meet the criteria for any of the following on or before the specified date. The earliest date on which the individual meets any of the following criteria on or before the specified date is defined as the first event date:
Primary care
1. Liver fibrosis, sclerosis and 'Liver fibrosis, sclerosis and cirrhosis' diagnosis or history of diagnosis or procedure during a consultation
OR
Secondary care
1. ALL diagnoses of Liver fibrosis, sclerosis and 'Liver fibrosis, sclerosis and cirrhosis' or history of diagnosis during a hospitalization
~~~
<h4>Primary care (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//primary_care/CPRD_cirrhosis.csv'>CPRD_cirrhosis.csv</a>)</h4>
<table>
<thead>
<tr>
<th>Read code</th>
<th>Read Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left">C310400</td>
<td align="left">Glycogenosis with hepatic cirrhosis</td>
</tr>
<tr>
<td align="left">C350012</td>
<td align="left">Pigmentary cirrhosis of liver</td>
</tr>
<tr>
<td align="left">C370800</td>
<td align="left">Cystic fibrosis related cirrhosis</td>
</tr>
<tr>
<td align="left">G852200</td>
<td align="left">Oesophageal varices in cirrhosis of the liver</td>
</tr>
<tr>
<td align="left">G852300</td>
<td align="left">Oesophageal varices in alcoholic cirrhosis of the liver</td>
</tr>
<tr>
<td align="left">J612000</td>
<td align="left">Alcoholic fibrosis and sclerosis of liver</td>
</tr>
<tr>
<td align="left">J612.00</td>
<td align="left">Alcoholic cirrhosis of liver</td>
</tr>
<tr>
<td align="left">J612.11</td>
<td align="left">Florid cirrhosis</td>
</tr>
<tr>
<td align="left">J612.12</td>
<td align="left">Laennec's cirrhosis</td>
</tr>
<tr>
<td align="left">J613000</td>
<td align="left">Alcoholic hepatic failure</td>
</tr>
<tr>
<td align="left">J613.00</td>
<td align="left">Alcoholic liver damage unspecified</td>
</tr>
<tr>
<td align="left">J615100</td>
<td align="left">Multilobular portal cirrhosis</td>
</tr>
<tr>
<td align="left">J615300</td>
<td align="left">Diffuse nodular cirrhosis</td>
</tr>
<tr>
<td align="left">J615400</td>
<td align="left">Fatty portal cirrhosis</td>
</tr>
<tr>
<td align="left">J615500</td>
<td align="left">Hypertrophic portal cirrhosis</td>
</tr>
<tr>
<td align="left">J615600</td>
<td align="left">Capsular portal cirrhosis</td>
</tr>
<tr>
<td align="left">J615700</td>
<td align="left">Cardiac portal cirrhosis</td>
</tr>
<tr>
<td align="left">J615711</td>
<td align="left">Congestive cirrhosis</td>
</tr>
<tr>
<td align="left">J615800</td>
<td align="left">Juvenile portal cirrhosis</td>
</tr>
<tr>
<td align="left">J615812</td>
<td align="left">Indian childhood cirrhosis</td>
</tr>
<tr>
<td align="left">J615C00</td>
<td align="left">Xanthomatous portal cirrhosis</td>
</tr>
<tr>
<td align="left">J615D00</td>
<td align="left">Bacterial portal cirrhosis</td>
</tr>
<tr>
<td align="left">J615G00</td>
<td align="left">Zooparasitic portal cirrhosis</td>
</tr>
<tr>
<td align="left">J615H00</td>
<td align="left">Infectious cirrhosis NOS</td>
</tr>
<tr>
<td align="left">J615.00</td>
<td align="left">Cirrhosis - non alcoholic</td>
</tr>
<tr>
<td align="left">J615.11</td>
<td align="left">Portal cirrhosis</td>
</tr>
<tr>
<td align="left">J615y00</td>
<td align="left">Portal cirrhosis unspecified</td>
</tr>
<tr>
<td align="left">J615z00</td>
<td align="left">Non-alcoholic cirrhosis NOS</td>
</tr>
<tr>
<td align="left">J615z11</td>
<td align="left">Macronodular cirrhosis of liver</td>
</tr>
<tr>
<td align="left">J615z12</td>
<td align="left">Cryptogenic cirrhosis of liver</td>
</tr>
<tr>
<td align="left">J615z13</td>
<td align="left">Cirrhosis of liver NOS</td>
</tr>
<tr>
<td align="left">J615z15</td>
<td align="left">Hepatic fibrosis</td>
</tr>
<tr>
<td align="left">J616100</td>
<td align="left">Secondary biliary cirrhosis</td>
</tr>
<tr>
<td align="left">J616200</td>
<td align="left">Biliary cirrhosis of children</td>
</tr>
<tr>
<td align="left">J616.00</td>
<td align="left">Biliary cirrhosis</td>
</tr>
<tr>
<td align="left">J616z00</td>
<td align="left">Biliary cirrhosis NOS</td>
</tr>
<tr>
<td align="left">J617000</td>
<td align="left">Chronic alcoholic hepatitis</td>
</tr>
<tr>
<td align="left">J617.00</td>
<td align="left">Alcoholic hepatitis</td>
</tr>
<tr>
<td align="left">J61..00</td>
<td align="left">Cirrhosis and chronic liver disease</td>
</tr>
<tr>
<td align="left">J61y300</td>
<td align="left">Portal fibrosis without cirrhosis</td>
</tr>
<tr>
<td align="left">J61y400</td>
<td align="left">Hepatic fibrosis</td>
</tr>
<tr>
<td align="left">J61y500</td>
<td align="left">Hepatic sclerosis</td>
</tr>
<tr>
<td align="left">J61y600</td>
<td align="left">Hepatic fibrosis with hepatic sclerosis</td>
</tr>
<tr>
<td align="left">J635600</td>
<td align="left">Toxic liver disease with fibrosis and cirrhosis of liver</td>
</tr>
<tr>
<td align="left">Jyu7100</td>
<td align="left">[X]Other and unspecified cirrhosis of liver</td>
</tr>
</tbody>
</table>
<h4>Secondary care diagnoses (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//secondary_care/ICD_cirrhosis.csv'>ICD_cirrhosis.csv</a>)</h4>
<table>
<thead>
<tr>
<th>ICD-10 code</th>
<th>ICD-10 Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left">K70.1</td>
<td align="left">Alcoholic hepatitis</td>
</tr>
<tr>
<td align="left">K70.2</td>
<td align="left">Alcoholic fibrosis and sclerosis of liver</td>
</tr>
<tr>
<td align="left">K70.3</td>
<td align="left">Alcoholic cirrhosis of liver</td>
</tr>
<tr>
<td align="left">K71.7</td>
<td align="left">Toxic liver disease with fibrosis and cirrhosis of liver</td>
</tr>
<tr>
<td align="left">K74.0</td>
<td align="left">Hepatic fibrosis</td>
</tr>
<tr>
<td align="left">K74.1</td>
<td align="left">Hepatic sclerosis</td>
</tr>
<tr>
<td align="left">K74.2</td>
<td align="left">Hepatic fibrosis with hepatic sclerosis</td>
</tr>
<tr>
<td align="left">K74.4</td>
<td align="left">Secondary biliary cirrhosis</td>
</tr>
<tr>
<td align="left">K74.5</td>
<td align="left">Biliary cirrhosis, unspecified</td>
</tr>
<tr>
<td align="left">K74.6</td>
<td align="left">Other and unspecified cirrhosis of liver</td>
</tr>
</tbody>
</table>
<h2>Low HDL-C</h2>
<h4>Implementation</h4>
~~~
At the specified date, a patient is defined as having had Low HDL Cholesterol IF they meet the criteria for any of the following on or before the specified date.
Primary care
1. IF FEMALE the lowest value EVER recorded for HDL Cholesterol for a patient on or before the specified date is less than:
a) serum: 1.2 mmol/L
OR
b) serum: 46.404 mg/dL
OR
c) plasma: 1.1650 mmol/L
OR
d) plasma: 45.0524 mg/dL
2. IF MALE the lowest value EVER recorded for HDL Cholesterol for a patient on or before the specified date is less than:
a) serum: 1 mmol/L
OR
b) serum: 38.67 mg/dL
OR
c) plasma: 0.9709 mmol/L
OR
d) plasma: 37.5437 mg/dL
~~~
<h2>Lower Respiratory Tract Infections</h2>
<h4>Implementation</h4>
~~~
At the specified date, a patient is defined as having had Lower Respiratory Tract Infections IF they meet the criteria for any of the following on or before the specified date. The earliest date on which the individual meets any of the following criteria on or before the specified date is defined as the first event date:
Secondary care
1. ALL diagnoses of Lower Respiratory Tract Infections or history of diagnosis during a hospitalization
~~~
<h4>Secondary care diagnoses (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//secondary_care/ICD_lrti.csv'>ICD_lrti.csv</a>)</h4>
<table>
<thead>
<tr>
<th>ICD-10 code</th>
<th>ICD-10 Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left">A06.5</td>
<td align="left">Amoebic lung abscess</td>
</tr>
<tr>
<td align="left">A15</td>
<td align="left">Respiratory tuberculosis, bacteriologically and histologically confirmed</td>
</tr>
<tr>
<td align="left">A16</td>
<td align="left">Respiratory tuberculosis, not confirmed bacteriologically or histologically</td>
</tr>
<tr>
<td align="left">A20.2</td>
<td align="left">Pneumonic plague</td>
</tr>
<tr>
<td align="left">A21.2</td>
<td align="left">Pulmonary tularaemia</td>
</tr>
<tr>
<td align="left">A22.1</td>
<td align="left">Pulmonary Anthrax</td>
</tr>
<tr>
<td align="left">A31.0</td>
<td align="left">Pulmonary mycobacterial infection</td>
</tr>
<tr>
<td align="left">A37</td>
<td align="left">Whooping cough</td>
</tr>
<tr>
<td align="left">A42.0</td>
<td align="left">Pulmonary actinomycosis</td>
</tr>
<tr>
<td align="left">A43.0</td>
<td align="left">Pulmonary nocardiosis</td>
</tr>
<tr>
<td align="left">B01.2</td>
<td align="left">Varicella pneumonia</td>
</tr>
<tr>
<td align="left">B05.2</td>
<td align="left">Measles complicated by pneumonia</td>
</tr>
<tr>
<td align="left">B25.0</td>
<td align="left">Cytomegaloviral pneumonitis</td>
</tr>
<tr>
<td align="left">B37.1</td>
<td align="left">Pulmonary candidiasis</td>
</tr>
<tr>
<td align="left">B38.0</td>
<td align="left">Acute pulmonary coccidioidomycosis</td>
</tr>
<tr>
<td align="left">B38.1</td>
<td align="left">Chronic pulmonary coccidioidomycosis</td>
</tr>
<tr>
<td align="left">B38.2</td>
<td align="left">Pulmonary coccidioidomycosis, unspecified</td>
</tr>
<tr>
<td align="left">B39.0</td>
<td align="left">Acute pulmonary histoplasmosis capsulati</td>
</tr>
<tr>
<td align="left">B39.1</td>
<td align="left">Chronic pulmonary histoplasmosis capsulati</td>
</tr>
<tr>
<td align="left">B39.2</td>
<td align="left">Pulmonary histoplasmosis capsulati, unspecified</td>
</tr>
<tr>
<td align="left">B40.0</td>
<td align="left">Acute pulmonary blastomycosis</td>
</tr>
<tr>
<td align="left">B40.1</td>
<td align="left">Chronic pulmonary blastomycosis</td>
</tr>
<tr>
<td align="left">B40.2</td>
<td align="left">Pulmonary blastomycosis, unspecified</td>
</tr>
<tr>
<td align="left">B41.0</td>
<td align="left">Pulmonary paracoccidioidomycosis</td>
</tr>
<tr>
<td align="left">B42.0</td>
<td align="left">Pulmonary sporotrichosis</td>
</tr>
<tr>
<td align="left">B44.0</td>
<td align="left">Invasive pulmonary aspergillosis</td>
</tr>
<tr>
<td align="left">B44.1</td>
<td align="left">Other pulmonary aspergillosis</td>
</tr>
<tr>
<td align="left">B45.0</td>
<td align="left">Pulmonary cryptococcosis</td>
</tr>
<tr>
<td align="left">B46.0</td>
<td align="left">Pulmonary mucormycosis</td>
</tr>
<tr>
<td align="left">B58.3</td>
<td align="left">Pulmonary toxoplasmosis</td>
</tr>
<tr>
<td align="left">B59</td>
<td align="left">Pneumocystosis</td>
</tr>
<tr>
<td align="left">B67.1</td>
<td align="left">Echinococcus granulosus infection of lung</td>
</tr>
<tr>
<td align="left">J10.0</td>
<td align="left">Influenza with pneumonia, other influenza virus identified</td>
</tr>
<tr>
<td align="left">J11.0</td>
<td align="left">Influenza with pneumonia, virus not identified</td>
</tr>
<tr>
<td align="left">J12</td>
<td align="left">Viral pneumonia, not elsewhere classified</td>
</tr>
<tr>
<td align="left">J13</td>
<td align="left">Pneumonia due to Streptococcus pneumoniae</td>
</tr>
<tr>
<td align="left">J14</td>
<td align="left">Pneumonia due to Haemophilus influenzae</td>
</tr>
<tr>
<td align="left">J15</td>
<td align="left">Bacterial pneumonia, not elsewhere classified</td>
</tr>
<tr>
<td align="left">J16</td>
<td align="left">Pneumonia due to other infectious organisms, not elsewhere classified</td>
</tr>
<tr>
<td align="left">J17</td>
<td align="left">Pneumonia in diseases classified elsewhere</td>
</tr>
<tr>
<td align="left">J18</td>
<td align="left">Pneumonia, organism unspecified</td>
</tr>
<tr>
<td align="left">J20</td>
<td align="left">Acute bronchitis</td>
</tr>
<tr>
<td align="left">J21</td>
<td align="left">Acute bronchiolitis</td>
</tr>
<tr>
<td align="left">J22</td>
<td align="left">Unspecified acute lower respiratory infection</td>
</tr>
<tr>
<td align="left">J44.0</td>
<td align="left">Chronic obstructive pulmonary disease with acute lower respiratory infection</td>
</tr>
<tr>
<td align="left">J44.1</td>
<td align="left">Chronic obstructive pulmonary disease with acute exacerbation, unspecified</td>
</tr>
<tr>
<td align="left">J65</td>
<td align="left">Pneumoconiosis associated with tuberculosis</td>
</tr>
<tr>
<td align="left">J85.0</td>
<td align="left">Gangrene and necrosis of lung</td>
</tr>
<tr>
<td align="left">J85.1</td>
<td align="left">Abscess of lung with pneumonia</td>
</tr>
<tr>
<td align="left">J85.2</td>
<td align="left">Abscess of lung without pneumonia</td>
</tr>
<tr>
<td align="left">J86</td>
<td align="left">Pyothorax</td>
</tr>
<tr>
<td align="left">P23</td>
<td align="left">Congenital pneumonia</td>
</tr>
</tbody>
</table>
<h2>Lupus erythematosus (local and systemic)</h2>
<h4>Implementation</h4>
~~~
At the specified date, a patient is defined as having had 'Lupus erythematosus (local and systemic)' (local and systemic) IF they meet the criteria for any of the following on or before the specified date. The earliest date on which the individual meets any of the following criteria on or before the specified date is defined as the first event date:
Primary care
1. 'Lupus erythematosus (local and systemic)' (local and systemic) diagnosis or history of diagnosis during a consultation
OR
Secondary care (ICD10)
1. ALL diagnoses of 'Lupus erythematosus (local and systemic)' (local and systemic) or history of diagnosis during a hospitalization
~~~
<h4>Primary care (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//primary_care/CPRD_SLE.csv'>CPRD_SLE.csv</a>)</h4>
<table>
<thead>
<tr>
<th>Read code</th>
<th>Read Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left">F371000</td>
<td align="left">Polyneuropathy in disseminated lupus erythematosus</td>
</tr>
<tr>
<td align="left">F396100</td>
<td align="left">Myopathy due to disseminated lupus erythematosus</td>
</tr>
<tr>
<td align="left">F4D3300</td>
<td align="left">Eyelid discoid lupus erythematosus</td>
</tr>
<tr>
<td align="left">H57y400</td>
<td align="left">Lung disease with systemic lupus erythematosus</td>
</tr>
<tr>
<td align="left">K01x400</td>
<td align="left">Nephrotic syndrome in systemic lupus erythematosus</td>
</tr>
<tr>
<td align="left">K01x411</td>
<td align="left">Lupus nephritis</td>
</tr>
<tr>
<td align="left">K0B4000</td>
<td align="left">Renal tubulo-interstitial disorder in SLE</td>
</tr>
<tr>
<td align="left">M154000</td>
<td align="left">Lupus erythematosus chronicus</td>
</tr>
<tr>
<td align="left">M154100</td>
<td align="left">Discoid lupus erythematosus</td>
</tr>
<tr>
<td align="left">M154200</td>
<td align="left">Lupus erythematosus migrans</td>
</tr>
<tr>
<td align="left">M154300</td>
<td align="left">Lupus erythematosus nodularis</td>
</tr>
<tr>
<td align="left">M154400</td>
<td align="left">Lupus erythematosus profundus</td>
</tr>
<tr>
<td align="left">M154500</td>
<td align="left">Lupus erythematosus tumidus</td>
</tr>
<tr>
<td align="left">M154600</td>
<td align="left">Lupus erythematosus unguium mutilans</td>
</tr>
<tr>
<td align="left">M154700</td>
<td align="left">Subacute cutaneous lupus erythematosus</td>
</tr>
<tr>
<td align="left">M154.00</td>
<td align="left">Lupus erythematosus</td>
</tr>
<tr>
<td align="left">M154z00</td>
<td align="left">Lupus erythematosus NOS</td>
</tr>
<tr>
<td align="left">Myu7800</td>
<td align="left">[X]Other local lupus erythematosus</td>
</tr>
<tr>
<td align="left">N000000</td>
<td align="left">Disseminated lupus erythematosus</td>
</tr>
<tr>
<td align="left">N000100</td>
<td align="left">Libman-Sacks disease</td>
</tr>
<tr>
<td align="left">N000200</td>
<td align="left">Drug-induced systemic lupus erythematosus</td>
</tr>
<tr>
<td align="left">N000300</td>
<td align="left">Systemic lupus erythematosus with organ or sys involv</td>
</tr>
<tr>
<td align="left">N000400</td>
<td align="left">Systemic lupus erythematosus with pericarditis</td>
</tr>
<tr>
<td align="left">N000600</td>
<td align="left">Cerebral lupus</td>
</tr>
<tr>
<td align="left">N000.00</td>
<td align="left">Systemic lupus erythematosus</td>
</tr>
<tr>
<td align="left">N000z00</td>
<td align="left">Systemic lupus erythematosus NOS</td>
</tr>
<tr>
<td align="left">Nyu4300</td>
<td align="left">[X]Other forms of systemic lupus erythematosus</td>
</tr>
<tr>
<td align="left">ZRq8.00</td>
<td align="left">Systemic lupus activity measure</td>
</tr>
<tr>
<td align="left">ZRq8.11</td>
<td align="left">SLAM - Systemic lupus activity measure</td>
</tr>
<tr>
<td align="left">ZRq9.00</td>
<td align="left">Systemic lupus erythematosus disease activity index</td>
</tr>
<tr>
<td align="left">ZRq9.11</td>
<td align="left">SLEDAI-Sys lup ery dis act ind</td>
</tr>
</tbody>
</table>
<h4>Secondary care diagnoses (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//secondary_care/ICD_SLE.csv'>ICD_SLE.csv</a>)</h4>
<table>
<thead>
<tr>
<th>ICD-10 code</th>
<th>ICD-10 Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left">L93</td>
<td align="left">Lupus erythematosus</td>
</tr>
<tr>
<td align="left">M32</td>
<td align="left">Systemic lupus erythematosus</td>
</tr>
</tbody>
</table>
<h2>Macular degeneration</h2>
<h4>Implementation</h4>
~~~
At the specified date, a patient is defined as having had 'Macular degeneration' IF they meet the criteria for any of the following on or before the specified date. The earliest date on which the individual meets any of the following criteria on or before the specified date is defined as the first event date:
Primary care
1. 'Macular degeneration' diagnosis or history of diagnosis during a consultation
OR
Secondary care
1. ALL diagnoses of 'Macular degeneration' or history of diagnosis during a hospitalization
~~~
<h4>Primary care (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//primary_care/CPRD_macula_degen.csv'>CPRD_macula_degen.csv</a>)</h4>
<table>
<thead>
<tr>
<th>Read code</th>
<th>Read Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left">2BBH.00</td>
<td align="left">Retinal drusen</td>
</tr>
<tr>
<td align="left">F424200</td>
<td align="left">Retinal pigment epithelium serous detachment</td>
</tr>
<tr>
<td align="left">F424300</td>
<td align="left">Retinal pigment epithelium haemorrhagic detachment</td>
</tr>
<tr>
<td align="left">F424400</td>
<td align="left">Retinal pigment epithelial detachment</td>
</tr>
<tr>
<td align="left">F425000</td>
<td align="left">Unspecified senile macular degeneration</td>
</tr>
<tr>
<td align="left">F425100</td>
<td align="left">Dry senile macular degeneration</td>
</tr>
<tr>
<td align="left">F425200</td>
<td align="left">Wet senile macular degeneration</td>
</tr>
<tr>
<td align="left">F425211</td>
<td align="left">Kuhnt - Junius degeneration</td>
</tr>
<tr>
<td align="left">F425700</td>
<td align="left">Drusen</td>
</tr>
<tr>
<td align="left">F425.00</td>
<td align="left">Degeneration of macula and posterior pole</td>
</tr>
<tr>
<td align="left">F425.11</td>
<td align="left">Senile macular degeneration</td>
</tr>
<tr>
<td align="left">F425z00</td>
<td align="left">Degeneration of macula or posterior pole NOS</td>
</tr>
</tbody>
</table>
<h4>Secondary care diagnoses (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//secondary_care/ICD_macula_degen.csv'>ICD_macula_degen.csv</a>)</h4>
<table>
<thead>
<tr>
<th>ICD-10 code</th>
<th>ICD-10 Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left">H35.3</td>
<td align="left">Degeneration of macula and posterior pole</td>
</tr>
</tbody>
</table>
<h2>Male infertility</h2>
<h4>Implementation</h4>
~~~
At the specified date, a patient is defined as having had 'Male infertility' IF they meet the criteria for any of the following on or before the specified date. The earliest date on which the individual meets any of the following criteria on or before the specified date is defined as the first event date:
Primary care
1. 'Male infertility' diagnosis or history of diagnosis during a consultation
OR
2. 'Male infertility' possible diagnosis during a consultation IF patient = male
OR
Secondary care
1. ALL diagnoses of 'Male infertility' or history of diagnosis during a hospitalization
~~~
<h4>Primary care (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//primary_care/CPRD_male_infertility.csv'>CPRD_male_infertility.csv</a>)</h4>
<table>
<thead>
<tr>
<th>Read code</th>
<th>Read Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="right">4914</td>
<td align="left">Semen exam.: low fertility</td>
</tr>
<tr>
<td align="right">4915</td>
<td align="left">Semen exam.:very low fertility</td>
</tr>
<tr>
<td align="right">4916</td>
<td align="left">Semen exam.: infertile</td>
</tr>
<tr>
<td align="right">4917</td>
<td align="left">Semen exam: abnormal</td>
</tr>
<tr>
<td align="left">K260.00</td>
<td align="left">Azoospermia</td>
</tr>
<tr>
<td align="left">K260.11</td>
<td align="left">Young's syndrome</td>
</tr>
<tr>
<td align="left">K261000</td>
<td align="left">Oligoasthenozoospermia</td>
</tr>
<tr>
<td align="left">K261.00</td>
<td align="left">Oligospermia</td>
</tr>
<tr>
<td align="left">K262.00</td>
<td align="left">Aspermia</td>
</tr>
<tr>
<td align="left">K26..00</td>
<td align="left">Male infertility</td>
</tr>
<tr>
<td align="left">K26y200</td>
<td align="left">Infertility due to efferent duct obstruction</td>
</tr>
<tr>
<td align="left">K26y300</td>
<td align="left">Infertility due to radiation</td>
</tr>
<tr>
<td align="left">K26y400</td>
<td align="left">Infertility in systemic disease</td>
</tr>
<tr>
<td align="left">K26y.00</td>
<td align="left">Infertility due to extratesticular cause</td>
</tr>
<tr>
<td align="left">K26yz00</td>
<td align="left">Infertility due to extratesticular cause NOS</td>
</tr>
<tr>
<td align="left">K26z.00</td>
<td align="left">Male infertility NOS</td>
</tr>
<tr>
<td align="left">K5B1000</td>
<td align="left">Primary pituitary - hypothalamic infertility</td>
</tr>
<tr>
<td align="left">K5B1100</td>
<td align="left">Secondary pituitary - hypothalamic infertility</td>
</tr>
<tr>
<td align="left">K5B6.00</td>
<td align="left">Female infertility associated with male factors</td>
</tr>
<tr>
<td align="left">K5By000</td>
<td align="left">Primary infertility unspecified</td>
</tr>
<tr>
<td align="left">K5By100</td>
<td align="left">Secondary infertility unspecified</td>
</tr>
<tr>
<td align="left">K5Byz11</td>
<td align="left">Subfertility</td>
</tr>
</tbody>
</table>
<h4>Secondary care diagnoses (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//secondary_care/ICD_male_infertility.csv'>ICD_male_infertility.csv</a>)</h4>
<table>
<thead>
<tr>
<th>ICD-10 code</th>
<th>ICD-10 Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left">N46</td>
<td align="left">Male infertility</td>
</tr>
</tbody>
</table>
<h2>Meniere disease</h2>
<h4>Implementation</h4>
~~~
At the specified date, a patient is defined as having had Ménière's disease IF they meet the criteria for any of the following on or before the specified date. The earliest date on which the individual meets any of the following criteria on or before the specified date is defined as the first event date:
Primary care
1. Ménière's disease diagnosis or history of diagnosis during a consultation
OR
Secondary care (ICD10)
1. ALL diagnoses of Ménière's disease or history of diagnosis during a hospitalization
~~~
<h4>Primary care (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//primary_care/CPRD_meniere.csv'>CPRD_meniere.csv</a>)</h4>
<table>
<thead>
<tr>
<th>Read code</th>
<th>Read Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="right">1491.1</td>
<td align="left">H/O: Meniere's disease</td>
</tr>
<tr>
<td align="left">F560000</td>
<td align="left">Unspecified Meniere's disease</td>
</tr>
<tr>
<td align="left">F560100</td>
<td align="left">Active cochleovestibular Meniere's disease</td>
</tr>
<tr>
<td align="left">F560200</td>
<td align="left">Active cochlear Meniere's disease</td>
</tr>
<tr>
<td align="left">F560300</td>
<td align="left">Active vestibular Meniere's disease</td>
</tr>
<tr>
<td align="left">F560400</td>
<td align="left">Inactive Meniere's disease</td>
</tr>
<tr>
<td align="left">F560.00</td>
<td align="left">Meniere's disease</td>
</tr>
<tr>
<td align="left">F560.11</td>
<td align="left">Endolymphatic hydrops</td>
</tr>
<tr>
<td align="left">F560.12</td>
<td align="left">Lermoyez's syndrome</td>
</tr>
<tr>
<td align="left">F560z00</td>
<td align="left">Meniere's disease NOS</td>
</tr>
</tbody>
</table>
<h4>Secondary care diagnoses (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//secondary_care/ICD_meniere.csv'>ICD_meniere.csv</a>)</h4>
<table>
<thead>
<tr>
<th>ICD-10 code</th>
<th>ICD-10 Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left">H81.0</td>
<td align="left">Meniere's disease</td>
</tr>
</tbody>
</table>
<h2>Meningitis</h2>
<h4>Implementation</h4>
~~~
At the specified date, a patient is defined as having had 'Meningitis' IF they meet the criteria for any of the following on or before the specified date. The earliest date on which the individual meets any of the following criteria on or before the specified date is defined as the first event date:
Secondary care
1. ALL diagnoses of 'Meningitis' or history of diagnosis during a hospitalization
~~~
<h4>Secondary care diagnoses (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//secondary_care/ICD_meningitis.csv'>ICD_meningitis.csv</a>)</h4>
<table>
<thead>
<tr>
<th>ICD-10 code</th>
<th>ICD-10 Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left">A17.0</td>
<td align="left">Tuberculous meningitis</td>
</tr>
<tr>
<td align="left">A17.1</td>
<td align="left">Meningeal tuberculoma</td>
</tr>
<tr>
<td align="left">A20.3</td>
<td align="left">Plague meningitis</td>
</tr>
<tr>
<td align="left">A32.1</td>
<td align="left">Listerial meningitis and meningoencephalitis</td>
</tr>
<tr>
<td align="left">A39.0</td>
<td align="left">Meningococcal meningitis</td>
</tr>
<tr>
<td align="left">A87</td>
<td align="left">Viral meningitis</td>
</tr>
<tr>
<td align="left">B00.3</td>
<td align="left">Herpesviral meningitis</td>
</tr>
<tr>
<td align="left">B01.0</td>
<td align="left">Varicella meningitis</td>
</tr>
<tr>
<td align="left">B02.1</td>
<td align="left">Zoster meningitis</td>
</tr>
<tr>
<td align="left">B05.1</td>
<td align="left">Measles complicated by meningitis</td>
</tr>
<tr>
<td align="left">B26.1</td>
<td align="left">Mumps meningitis</td>
</tr>
<tr>
<td align="left">B37.5</td>
<td align="left">Candidal meningitis</td>
</tr>
<tr>
<td align="left">B38.4</td>
<td align="left">Coccidioidomycosis meningitis</td>
</tr>
<tr>
<td align="left">G00</td>
<td align="left">Bacterial meningitis, not elsewhere classified</td>
</tr>
<tr>
<td align="left">G01</td>
<td align="left">Meningitis in bacterial diseases classified elsewhere</td>
</tr>
<tr>
<td align="left">G02.0</td>
<td align="left">Meningitis in viral diseases classified elsewhere</td>
</tr>
<tr>
<td align="left">G02.1</td>
<td align="left">Meningitis in mycoses</td>
</tr>
<tr>
<td align="left">G02.8</td>
<td align="left">Meningitis in other specified infectious and parasitic diseases classified elsewhere</td>
</tr>
</tbody>
</table>
<h2>Menorrhagia and polymenorrhoea</h2>
<h4>Implementation</h4>
~~~
At the specified date, a patient is defined as having had 'Menorrhagia and polymenorrhoea' and polymenorrhoea IF they meet the criteria for any of the following on or before the specified date. The earliest date on which the individual meets any of the following criteria on or before the specified date is defined as the first event date:
Primary care
1. 'Menorrhagia and polymenorrhoea' and polymenorrhoea diagnosis or history of diagnosis during a consultation
OR
Secondary care
1. ALL diagnoses of 'Menorrhagia and polymenorrhoea' and polymenorrhoea or history of diagnosis during a hospitalization
~~~
<h4>Primary care (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//primary_care/CPRD_menorrhagia.csv'>CPRD_menorrhagia.csv</a>)</h4>
<table>
<thead>
<tr>
<th>Read code</th>
<th>Read Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left">151G.00</td>
<td align="left">Length of cycle decreasing</td>
</tr>
<tr>
<td align="left">1572.00</td>
<td align="left">H/O: polymenorrhoea</td>
</tr>
<tr>
<td align="left">1573.00</td>
<td align="left">H/O: menorrhagia</td>
</tr>
<tr>
<td align="left">1573.11</td>
<td align="left">H/O: heavy periods</td>
</tr>
<tr>
<td align="left">K592000</td>
<td align="left">Menorrhagia</td>
</tr>
<tr>
<td align="left">K592011</td>
<td align="left">Heavy periods</td>
</tr>
<tr>
<td align="left">K592012</td>
<td align="left">Heavy menstrual bleeding</td>
</tr>
<tr>
<td align="left">K592100</td>
<td align="left">Polymenorrhoea</td>
</tr>
<tr>
<td align="left">K592111</td>
<td align="left">Epimenorrhoea</td>
</tr>
<tr>
<td align="left">K592.00</td>
<td align="left">Excessive or frequent menstruation</td>
</tr>
<tr>
<td align="left">K592.11</td>
<td align="left">Frequent menses</td>
</tr>
<tr>
<td align="left">K592.12</td>
<td align="left">Hypermenorrhoea</td>
</tr>
<tr>
<td align="left">K592z00</td>
<td align="left">Excessive or frequent menstruation NOS</td>
</tr>
<tr>
<td align="left">K593.11</td>
<td align="left">Pubertal bleeding and menorrhagia</td>
</tr>
<tr>
<td align="left">K5A0.00</td>
<td align="left">Premenopausal menorrhagia</td>
</tr>
<tr>
<td align="left">K5A0.11</td>
<td align="left">Climacteric menorrhagia</td>
</tr>
<tr>
<td align="left">K5A6.00</td>
<td align="left">Perimenopausal menorrhagia</td>
</tr>
</tbody>
</table>
<h4>Secondary care diagnoses (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//secondary_care/ICD_menorrhagia.csv'>ICD_menorrhagia.csv</a>)</h4>
<table>
<thead>
<tr>
<th>ICD-10 code</th>
<th>ICD-10 Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left">N92.0</td>
<td align="left">Excessive and frequent menstruation with regular cycle</td>
</tr>
<tr>
<td align="left">N92.1</td>
<td align="left">Excessive and frequent menstruation with irregular cycle</td>
</tr>
<tr>
<td align="left">N92.2</td>
<td align="left">Excessive menstruation at puberty</td>
</tr>
<tr>
<td align="left">N92.4</td>
<td align="left">Excessive bleeding in the premenopausal period</td>
</tr>
</tbody>
</table>
<h2>Migraine</h2>
<h4>Implementation</h4>
~~~
At the specified date, a patient is defined as having had 'Migraine' IF they meet the criteria for any of the following on or before the specified date. The earliest date on which the individual meets any of the following criteria on or before the specified date is defined as the first event date:
Primary care
1. 'Migraine' diagnosis or history of diagnosis during a consultation
OR
Secondary care
1. ALL diagnoses of 'Migraine' or history of diagnosis during a hospitalization
~~~
<h4>Primary care (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//primary_care/CPRD_migraine.csv'>CPRD_migraine.csv</a>)</h4>
<table>
<thead>
<tr>
<th>Read code</th>
<th>Read Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="right">1474000</td>
<td align="left">H/O migraine with aura</td>
</tr>
<tr>
<td align="right">1474</td>
<td align="left">H/O: migraine</td>
</tr>
<tr>
<td align="left">8B6N.00</td>
<td align="left">Migraine prophylaxis</td>
</tr>
<tr>
<td align="left">F260.00</td>
<td align="left">Classical migraine</td>
</tr>
<tr>
<td align="left">F260.11</td>
<td align="left">Migraine with aura</td>
</tr>
<tr>
<td align="left">F261000</td>
<td align="left">Atypical migraine</td>
</tr>
<tr>
<td align="left">F261.00</td>
<td align="left">Common migraine</td>
</tr>
<tr>
<td align="left">F261.11</td>
<td align="left">Migraine without aura</td>
</tr>
<tr>
<td align="left">F261z00</td>
<td align="left">Common migraine NOS</td>
</tr>
<tr>
<td align="left">F262200</td>
<td align="left">Abdominal migraine</td>
</tr>
<tr>
<td align="left">F262300</td>
<td align="left">Basilar migraine</td>
</tr>
<tr>
<td align="left">F262400</td>
<td align="left">Ophthalmic migraine</td>
</tr>
<tr>
<td align="left">F262800</td>
<td align="left">Migraine induced by oestrogen contraceptive</td>
</tr>
<tr>
<td align="left">F262.00</td>
<td align="left">Migraine variants</td>
</tr>
<tr>
<td align="left">F262z00</td>
<td align="left">Migraine variant NOS</td>
</tr>
<tr>
<td align="left">F26..00</td>
<td align="left">Migraine</td>
</tr>
<tr>
<td align="left">F26y000</td>
<td align="left">Hemiplegic migraine</td>
</tr>
<tr>
<td align="left">F26y100</td>
<td align="left">Ophthalmoplegic migraine</td>
</tr>
<tr>
<td align="left">F26y111</td>
<td align="left">Moebius' ophthalmoplegic migraine</td>
</tr>
<tr>
<td align="left">F26y200</td>
<td align="left">Status migrainosus</td>
</tr>
<tr>
<td align="left">F26y300</td>
<td align="left">Complicated migraine</td>
</tr>
<tr>
<td align="left">F26y.00</td>
<td align="left">Other forms of migraine</td>
</tr>
<tr>
<td align="left">F26yz00</td>
<td align="left">Other forms of migraine NOS</td>
</tr>
<tr>
<td align="left">F26z.00</td>
<td align="left">Migraine NOS</td>
</tr>
<tr>
<td align="left">Fyu5300</td>
<td align="left">[X]Other migraine</td>
</tr>
<tr>
<td align="left">K584.11</td>
<td align="left">Migraine - menstrual</td>
</tr>
</tbody>
</table>
<h4>Secondary care diagnoses (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//secondary_care/ICD_migraine.csv'>ICD_migraine.csv</a>)</h4>
<table>
<thead>
<tr>
<th>ICD-10 code</th>
<th>ICD-10 Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left">G43</td>
<td align="left">Migraine</td>
</tr>
</tbody>
</table>
<h2>Monoclonal gammopathy of undetermined significance (MGUS)</h2>
<h4>Implementation</h4>
~~~
At the specified date, a patient is defined as having had Monoclonal gammopathy of undetermined significance (MGUS) IF they meet the criteria for any of the following on or before the specified date. The earliest date on which the individual meets any of the following criteria on or before the specified date is defined as the first event date:
Primary care
1. Monoclonal gammopathy of undetermined significance (MGUS) diagnosis or history of diagnosis during a consultation
OR
Secondary care
1. ALL diagnoses of Monoclonal gammopathy of undetermined significance (MGUS) or history of diagnosis during a hospitalization
~~~
<h4>Primary care (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//primary_care/CPRD_MGUS.csv'>CPRD_MGUS.csv</a>)</h4>
<table>
<thead>
<tr>
<th>Read code</th>
<th>Read Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left">BBm7.00</td>
<td align="left">[M] Monoclonal gammopathy</td>
</tr>
<tr>
<td align="left">C331000</td>
<td align="left">Monoclonal gammopathy of uncertain significance</td>
</tr>
<tr>
<td align="left">C331.00</td>
<td align="left">Monoclonal paraproteinaemia</td>
</tr>
<tr>
<td align="left">C331.11</td>
<td align="left">Monoclonal gammopathy</td>
</tr>
<tr>
<td align="left">C332200</td>
<td align="left">Benign paraproteinaemia</td>
</tr>
<tr>
<td align="left">C332.00</td>
<td align="left">Other paraproteinaemias</td>
</tr>
<tr>
<td align="left">C332z00</td>
<td align="left">Paraproteinaemia NOS</td>
</tr>
</tbody>
</table>
<h4>Secondary care diagnoses (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//secondary_care/ICD_MGUS.csv'>ICD_MGUS.csv</a>)</h4>
<table>
<thead>
<tr>
<th>ICD-10 code</th>
<th>ICD-10 Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left">D47.2</td>
<td align="left">Monoclonal gammopathy of undetermined significance (MGUS)</td>
</tr>
</tbody>
</table>
<h2>Motor neuron disease</h2>
<h4>Implementation</h4>
~~~
At the specified date, a patient is defined as having had motor neuron disease IF they meet the criteria for any of the following on or before the specified date. The earliest date on which the individual meets any of the following criteria on or before the specified date is defined as the first event date:
Primary care
1. Motor neuron disease diagnosis or history of diagnosis during a consultation
OR
Secondary care
1. ALL diagnoses of motor neuron disease or history of diagnosis during a hospitalization
~~~
<h4>Primary care (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//primary_care/CPRD_MND.csv'>CPRD_MND.csv</a>)</h4>
<table>
<thead>
<tr>
<th>Read code</th>
<th>Read Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left">7Q04100</td>
<td align="left">Amyotrophic lateral sclerosis drugs Band 1</td>
</tr>
<tr>
<td align="left">F152000</td>
<td align="left">Amyotrophic lateral sclerosis</td>
</tr>
<tr>
<td align="left">F152100</td>
<td align="left">Progressive muscular atrophy</td>
</tr>
<tr>
<td align="left">F152111</td>
<td align="left">Duchenne Aran muscular atrophy</td>
</tr>
<tr>
<td align="left">F152200</td>
<td align="left">Progressive bulbar palsy</td>
</tr>
<tr>
<td align="left">F152300</td>
<td align="left">Pseudobulbar palsy</td>
</tr>
<tr>
<td align="left">F152400</td>
<td align="left">Primary lateral sclerosis</td>
</tr>
<tr>
<td align="left">F152.00</td>
<td align="left">Motor neurone disease</td>
</tr>
<tr>
<td align="left">F152z00</td>
<td align="left">Motor neurone disease NOS</td>
</tr>
<tr>
<td align="left">F15..00</td>
<td align="left">Anterior horn cell disease</td>
</tr>
<tr>
<td align="left">F15y.00</td>
<td align="left">Other anterior horn cell disease</td>
</tr>
<tr>
<td align="left">F15z.00</td>
<td align="left">Anterior horn cell disease NOS</td>
</tr>
</tbody>
</table>
<h4>Secondary care diagnoses (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//secondary_care/ICD_MND.csv'>ICD_MND.csv</a>)</h4>
<table>
<thead>
<tr>
<th>ICD-10 code</th>
<th>ICD-10 Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left">G12.2</td>
<td align="left">Motor neuron disease</td>
</tr>
</tbody>
</table>
<h2>Multiple myeloma and malignant plasma cell neoplasms</h2>
<h4>Implementation</h4>
~~~
At the specified date, a patient is defined as having had Multiple myeloma and malignant plasma cell neoplasms IF they meet the criteria for any of the following on or before the specified date. The earliest date on which the individual meets any of the following criteria on or before the specified date is defined as the first event date:
Primary care
1. Multiple myeloma and malignant plasma cell neoplasms diagnosis or history of diagnosis during a consultation
OR
Secondary care
1. ALL diagnoses of Multiple myeloma and malignant plasma cell neoplasms or history of diagnosis during a hospitalization
~~~
<h4>Primary care (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//primary_care/CPRD_plasmacell.csv'>CPRD_plasmacell.csv</a>)</h4>
<table>
<thead>
<tr>
<th>Read code</th>
<th>Read Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left">B630000</td>
<td align="left">Malignant plasma cell neoplasm, extramedullary plasmacytoma</td>
</tr>
<tr>
<td align="left">B630100</td>
<td align="left">Solitary myeloma</td>
</tr>
<tr>
<td align="left">B630200</td>
<td align="left">Plasmacytoma NOS</td>
</tr>
<tr>
<td align="left">B630300</td>
<td align="left">Lambda light chain myeloma</td>
</tr>
<tr>
<td align="left">B630400</td>
<td align="left">Solitary plasmacytoma</td>
</tr>
<tr>
<td align="left">B630.00</td>
<td align="left">Multiple myeloma</td>
</tr>
<tr>
<td align="left">B630.11</td>
<td align="left">Kahler's disease</td>
</tr>
<tr>
<td align="left">B630.12</td>
<td align="left">Myelomatosis</td>
</tr>
<tr>
<td align="left">B631.00</td>
<td align="left">Plasma cell leukaemia</td>
</tr>
<tr>
<td align="left">B63..00</td>
<td align="left">Multiple myeloma and immunoproliferative neoplasms</td>
</tr>
<tr>
<td align="left">B63z.00</td>
<td align="left">Immunoproliferative neoplasm or myeloma NOS</td>
</tr>
<tr>
<td align="left">B936.11</td>
<td align="left">Myeloma - solitary</td>
</tr>
<tr>
<td align="left">B936.12</td>
<td align="left">Plasmacytoma NOS</td>
</tr>
<tr>
<td align="left">BBm6.00</td>
<td align="left">[M] Alpha heavy chain disease</td>
</tr>
<tr>
<td align="left">BBmE.00</td>
<td align="left">[M] Gamma heavy chain disease</td>
</tr>
<tr>
<td align="left">BBmK.00</td>
<td align="left">[M]Waldenstrom's macroglobulinaemia</td>
</tr>
<tr>
<td align="left">BBn0.00</td>
<td align="left">[M]Plasma cell myeloma</td>
</tr>
<tr>
<td align="left">BBn0.11</td>
<td align="left">[M]Multiple myeloma</td>
</tr>
<tr>
<td align="left">BBn0.12</td>
<td align="left">[M]Myeloma NOS</td>
</tr>
<tr>
<td align="left">BBn0.13</td>
<td align="left">[M]Myelomatosis</td>
</tr>
<tr>
<td align="left">BBn0.14</td>
<td align="left">[M]Plasmacytic myeloma</td>
</tr>
<tr>
<td align="left">BBn2.00</td>
<td align="left">[M]Plasmacytoma NOS</td>
</tr>
<tr>
<td align="left">BBn2.11</td>
<td align="left">[M]Monostotic myeloma</td>
</tr>
<tr>
<td align="left">BBn2.12</td>
<td align="left">[M]Solitary myeloma</td>
</tr>
<tr>
<td align="left">BBn3.00</td>
<td align="left">[M]Plasma cell tumour, malignant</td>
</tr>
<tr>
<td align="left">BBn..00</td>
<td align="left">[M]Plasma cell tumours</td>
</tr>
<tr>
<td align="left">BBnz.00</td>
<td align="left">[M]Plasma cell tumour NOS</td>
</tr>
<tr>
<td align="left">BBr3.00</td>
<td align="left">[M]Plasma cell leukaemias</td>
</tr>
<tr>
<td align="left">BBr3z00</td>
<td align="left">[M]Plasma cell leukaemia NOS</td>
</tr>
<tr>
<td align="left">C333000</td>
<td align="left">Waldenstrom's macroglobulinaemia</td>
</tr>
<tr>
<td align="left">C333011</td>
<td align="left">Waldenstrom macroglobulinaemia</td>
</tr>
<tr>
<td align="left">C333100</td>
<td align="left">Alpha heavy chain disease</td>
</tr>
<tr>
<td align="left">C333200</td>
<td align="left">Gamma heavy chain disease</td>
</tr>
<tr>
<td align="left">C333300</td>
<td align="left">Heavy chain disease</td>
</tr>
<tr>
<td align="left">C333.00</td>
<td align="left">Macroglobulinaemia</td>
</tr>
<tr>
<td align="left">C333z00</td>
<td align="left">Macroglobulinaemia NOS</td>
</tr>
</tbody>
</table>
<h4>Secondary care diagnoses (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//secondary_care/ICD_plasmacell.csv'>ICD_plasmacell.csv</a>)</h4>
<table>
<thead>
<tr>
<th>ICD-10 code</th>
<th>ICD-10 Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left">C88.0</td>
<td align="left">Waldenström macroglobulinaemia</td>
</tr>
<tr>
<td align="left">C88.2</td>
<td align="left">Other heavy chain disease</td>
</tr>
<tr>
<td align="left">C90</td>
<td align="left">Multiple myeloma and malignant plasma cell neoplasms</td>
</tr>
</tbody>
</table>
<h2>Multiple sclerosis</h2>
<h4>Implementation</h4>
~~~
At the specified date, a patient is defined as having had 'Multiple sclerosis' IF they meet the criteria for any of the following on or before the specified date. The earliest date on which the individual meets any of the following criteria on or before the specified date is defined as the first event date:
Primary care
1. 'Multiple sclerosis' diagnosis or history of diagnosis during a consultation
OR
Secondary care
1. ALL diagnoses of 'Multiple sclerosis' or history of diagnosis during a hospitalization
~~~
<h4>Primary care (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//primary_care/CPRD_MS.csv'>CPRD_MS.csv</a>)</h4>
<table>
<thead>
<tr>
<th>Read code</th>
<th>Read Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left">666A.00</td>
<td align="left">Multiple sclerosis review</td>
</tr>
<tr>
<td align="left">666B.00</td>
<td align="left">Multiple sclerosis multidisciplinary review</td>
</tr>
<tr>
<td align="left">8Cc0.00</td>
<td align="left">Management of multiple sclerosis in onset phase</td>
</tr>
<tr>
<td align="left">8Cc1.00</td>
<td align="left">Management of multiple sclerosis in early disease phase</td>
</tr>
<tr>
<td align="left">8Cc2.00</td>
<td align="left">Management of multiple sclerosis in stable disability phase</td>
</tr>
<tr>
<td align="left">8Cc4.00</td>
<td align="left">Management of multiple sclerosis in palliative phase</td>
</tr>
<tr>
<td align="left">8CS1.00</td>
<td align="left">Multiple sclerosis care plan agreed</td>
</tr>
<tr>
<td align="left">8IAb.00</td>
<td align="left">Multiple sclerosis review declined</td>
</tr>
<tr>
<td align="left">9kG..00</td>
<td align="left">Spec serv for pat with multiple sclerosis - enh serv admin</td>
</tr>
<tr>
<td align="left">9mD0.00</td>
<td align="left">Multiple sclerosis monitoring first letter</td>
</tr>
<tr>
<td align="left">9mD1.00</td>
<td align="left">Multiple sclerosis monitoring second letter</td>
</tr>
<tr>
<td align="left">9mD..00</td>
<td align="left">Multiple sclerosis monitoring administration</td>
</tr>
<tr>
<td align="left">F200.00</td>
<td align="left">Multiple sclerosis of the brain stem</td>
</tr>
<tr>
<td align="left">F201.00</td>
<td align="left">Multiple sclerosis of the spinal cord</td>
</tr>
<tr>
<td align="left">F202.00</td>
<td align="left">Generalised multiple sclerosis</td>
</tr>
<tr>
<td align="left">F203.00</td>
<td align="left">Exacerbation of multiple sclerosis</td>
</tr>
<tr>
<td align="left">F204.00</td>
<td align="left">Benign multiple sclerosis</td>
</tr>
<tr>
<td align="left">F206.00</td>
<td align="left">Primary progressive multiple sclerosis</td>
</tr>
<tr>
<td align="left">F207.00</td>
<td align="left">Relapsing and remitting multiple sclerosis</td>
</tr>
<tr>
<td align="left">F208.00</td>
<td align="left">Secondary progressive multiple sclerosis</td>
</tr>
<tr>
<td align="left">F20..00</td>
<td align="left">Multiple sclerosis</td>
</tr>
<tr>
<td align="left">F20..11</td>
<td align="left">Disseminated sclerosis</td>
</tr>
<tr>
<td align="left">F20z.00</td>
<td align="left">Multiple sclerosis NOS</td>
</tr>
</tbody>
</table>
<h4>Secondary care diagnoses (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//secondary_care/ICD_MS.csv'>ICD_MS.csv</a>)</h4>
<table>
<thead>
<tr>
<th>ICD-10 code</th>
<th>ICD-10 Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left">G35</td>
<td align="left">Multiple sclerosis</td>
</tr>
</tbody>
</table>
<h2>Multiple valve dz</h2>
<h4>Implementation</h4>
~~~
At the specified date, a patient is defined as having had 'Multiple valve dz' IF they meet the criteria for any of the following on or before the specified date. The earliest date on which the individual meets any of the following criteria on or before the specified date is defined as the first event date:
Primary care
1. 'Multiple valve dz' diagnosis or history of diagnosis during a consultation
OR
Secondary care (ICD10)
1. ALL diagnoses of 'Multiple valve dz' or history of diagnosis during a hospitalization
~~~
<h4>Primary care (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//primary_care/CPRD_mult_valve.csv'>CPRD_mult_valve.csv</a>)</h4>
<table>
<thead>
<tr>
<th>Read code</th>
<th>Read Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left">G130.00</td>
<td align="left">Mitral and aortic stenosis</td>
</tr>
<tr>
<td align="left">G131.00</td>
<td align="left">Mitral stenosis and aortic insufficiency</td>
</tr>
<tr>
<td align="left">G131.13</td>
<td align="left">Mitral stenosis and aortic incompetence</td>
</tr>
<tr>
<td align="left">G131.14</td>
<td align="left">Mitral stenosis and aortic regurgitation</td>
</tr>
<tr>
<td align="left">G132.00</td>
<td align="left">Mitral insufficiency and aortic stenosis</td>
</tr>
<tr>
<td align="left">G132.12</td>
<td align="left">Mitral incompetence and aortic stenosis</td>
</tr>
<tr>
<td align="left">G132.13</td>
<td align="left">Mitral regurgitation and aortic stenosis</td>
</tr>
<tr>
<td align="left">G133.00</td>
<td align="left">Mitral and aortic incompetence</td>
</tr>
<tr>
<td align="left">G133.11</td>
<td align="left">Mitral and aortic insufficiency</td>
</tr>
<tr>
<td align="left">G133.12</td>
<td align="left">Mitral and aortic regurgitation</td>
</tr>
<tr>
<td align="left">G13..00</td>
<td align="left">Diseases of mitral and aortic valves</td>
</tr>
<tr>
<td align="left">G13y.00</td>
<td align="left">Multiple mitral and aortic valve involvement</td>
</tr>
<tr>
<td align="left">G13z.00</td>
<td align="left">Mitral and aortic valve disease NOS</td>
</tr>
<tr>
<td align="left">G544000</td>
<td align="left">Disorders of both aortic and tricuspid valves</td>
</tr>
<tr>
<td align="left">G544100</td>
<td align="left">Disorders of both mitral and tricuspid valves</td>
</tr>
<tr>
<td align="left">G544200</td>
<td align="left">Combined disorders of mitral, aortic and tricuspid valves</td>
</tr>
<tr>
<td align="left">G544.00</td>
<td align="left">Multiple valve diseases</td>
</tr>
<tr>
<td align="left">G544X00</td>
<td align="left">Multiple valve disease, unspecified</td>
</tr>
<tr>
<td align="left">Gyu5D00</td>
<td align="left">[X]Multiple valve disorders/diseases CE</td>
</tr>
</tbody>
</table>
<h4>Secondary care diagnoses (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//secondary_care/ICD_mult_valve.csv'>ICD_mult_valve.csv</a>)</h4>
<table>
<thead>
<tr>
<th>ICD-10 code</th>
<th>ICD-10 Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left">I08</td>
<td align="left">Multiple valve diseases</td>
</tr>
</tbody>
</table>
<h2>Myasthenia gravis</h2>
<h4>Implementation</h4>
~~~
At the specified date, a patient is defined as having had 'Myasthenia gravis' IF they meet the criteria for any of the following on or before the specified date. The earliest date on which the individual meets any of the following criteria on or before the specified date is defined as the first event date:
Primary care
1. 'Myasthenia gravis' diagnosis or history of diagnosis during a consultation
OR
Secondary care
1. ALL diagnoses of 'Myasthenia gravis' or history of diagnosis during a hospitalization
~~~
<h4>Primary care (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//primary_care/CPRD_myasthenia.csv'>CPRD_myasthenia.csv</a>)</h4>
<table>
<thead>
<tr>
<th>Read code</th>
<th>Read Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left">F380100</td>
<td align="left">Juvenile or adult myasthenia gravis</td>
</tr>
<tr>
<td align="left">F380.00</td>
<td align="left">Myasthenia gravis</td>
</tr>
<tr>
<td align="left">F380z00</td>
<td align="left">Myasthenia gravis NOS</td>
</tr>
</tbody>
</table>
<h4>Secondary care diagnoses (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//secondary_care/ICD_myasthenia.csv'>ICD_myasthenia.csv</a>)</h4>
<table>
<thead>
<tr>
<th>ICD-10 code</th>
<th>ICD-10 Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left">G70.0</td>
<td align="left">Myasthenia gravis</td>
</tr>
</tbody>
</table>
<h2>Mycoses</h2>
<h4>Implementation</h4>
~~~
At the specified date, a patient is defined as having had Mycoses IF they meet the criteria for any of the following on or before the specified date. The earliest date on which the individual meets any of the following criteria on or before the specified date is defined as the first event date:
Secondary care
1. ALL diagnoses of Mycoses or history of diagnosis during a hospitalization
~~~
<h4>Secondary care diagnoses (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//secondary_care/ICD_mycoses.csv'>ICD_mycoses.csv</a>)</h4>
<table>
<thead>
<tr>
<th>ICD-10 code</th>
<th>ICD-10 Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left">B20.4</td>
<td align="left">HIV disease resulting in candidiasis</td>
</tr>
<tr>
<td align="left">B20.5</td>
<td align="left">HIV disease resulting in other mycoses</td>
</tr>
<tr>
<td align="left">B20.6</td>
<td align="left">HIV disease resulting in Pneumocystis jirovecii pneumonia</td>
</tr>
<tr>
<td align="left">B35</td>
<td align="left">Dermatophytosis</td>
</tr>
<tr>
<td align="left">B36</td>
<td align="left">Other superficial mycoses</td>
</tr>
<tr>
<td align="left">B37</td>
<td align="left">Candidiasis</td>
</tr>
<tr>
<td align="left">B38</td>
<td align="left">Coccidioidomycosis</td>
</tr>
<tr>
<td align="left">B39</td>
<td align="left">Histoplasmosis</td>
</tr>
<tr>
<td align="left">B40</td>
<td align="left">Blastomycosis</td>
</tr>
<tr>
<td align="left">B41</td>
<td align="left">Paracoccidioidomycosis</td>
</tr>
<tr>
<td align="left">B42</td>
<td align="left">Sporotrichosis</td>
</tr>
<tr>
<td align="left">B43</td>
<td align="left">Chromomycosis and phaeomycotic abscess</td>
</tr>
<tr>
<td align="left">B44</td>
<td align="left">Aspergillosis</td>
</tr>
<tr>
<td align="left">B45</td>
<td align="left">Cryptococcosis</td>
</tr>
<tr>
<td align="left">B46</td>
<td align="left">Zygomycosis</td>
</tr>
<tr>
<td align="left">B47</td>
<td align="left">Mycetoma</td>
</tr>
<tr>
<td align="left">B48</td>
<td align="left">Other mycoses, not elsewhere classified</td>
</tr>
<tr>
<td align="left">B49</td>
<td align="left">Unspecified mycosis</td>
</tr>
<tr>
<td align="left">B59</td>
<td align="left">Pneumocystosis</td>
</tr>
<tr>
<td align="left">G02.1</td>
<td align="left">Meningitis in mycoses</td>
</tr>
<tr>
<td align="left">H62.2</td>
<td align="left">Otitis externa in mycoses</td>
</tr>
<tr>
<td align="left">J17.2</td>
<td align="left">Pneumonia in mycoses</td>
</tr>
<tr>
<td align="left">M01.6</td>
<td align="left">Arthritis in mycoses</td>
</tr>
</tbody>
</table>
<h2>Myelodysplastic syndromes</h2>
<h4>Implementation</h4>
~~~
At the specified date, a patient is defined as having had 'Myelodysplastic syndromes' IF they meet the criteria for any of the following on or before the specified date. The earliest date on which the individual meets any of the following criteria on or before the specified date is defined as the first event date:
Primary care
1. 'Myelodysplastic syndromes' diagnosis or history of diagnosis during a consultation
OR
Secondary care
1. ALL diagnoses of 'Myelodysplastic syndromes' or history of diagnosis during a hospitalization
~~~
<h4>Primary care (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//primary_care/CPRD_MDS.csv'>CPRD_MDS.csv</a>)</h4>
<table>
<thead>
<tr>
<th>Read code</th>
<th>Read Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left">7Q09700</td>
<td align="left">Myelodysplastic syndrome drugs Band 1</td>
</tr>
<tr>
<td align="left">B937000</td>
<td align="left">Refractory anaemia without sideroblasts, so stated</td>
</tr>
<tr>
<td align="left">B937100</td>
<td align="left">Refractory anaemia with sideroblasts</td>
</tr>
<tr>
<td align="left">B937200</td>
<td align="left">Refractory anaemia with excess of blasts</td>
</tr>
<tr>
<td align="left">B937300</td>
<td align="left">Refractory anaemia with excess of blasts with transformation</td>
</tr>
<tr>
<td align="left">B937600</td>
<td align="left">Refractory anaemia without ring sideroblasts</td>
</tr>
<tr>
<td align="left">B937700</td>
<td align="left">Refractory anaemia with ring sideroblasts</td>
</tr>
<tr>
<td align="left">B937800</td>
<td align="left">Refractory anaemia with multilineage dysplasia</td>
</tr>
<tr>
<td align="left">B937900</td>
<td align="left">5Q minus syndrome</td>
</tr>
<tr>
<td align="left">B937911</td>
<td align="left">Myelodysplastic syndrome isolated del(5q) chromosomal abnorm</td>
</tr>
<tr>
<td align="left">B937.14</td>
<td align="left">Myelodysplasia</td>
</tr>
<tr>
<td align="left">B937W00</td>
<td align="left">Myelodysplastic syndrome, unspecified</td>
</tr>
<tr>
<td align="left">B937W11</td>
<td align="left">Myelodysplasia</td>
</tr>
<tr>
<td align="left">B937X00</td>
<td align="left">Refractory anaemia, unspecified</td>
</tr>
<tr>
<td align="left">BBmA.00</td>
<td align="left">[M] Refractory anaemia with sideroblasts</td>
</tr>
<tr>
<td align="left">BBmB.00</td>
<td align="left">[M]Refractory anaemia+excess of blasts with transformation</td>
</tr>
<tr>
<td align="left">BBmL.00</td>
<td align="left">[M] Refractory anaemia with excess of blasts</td>
</tr>
<tr>
<td align="left">BBv..00</td>
<td align="left">[M]Myelodysplastic syndrome</td>
</tr>
<tr>
<td align="left">ByuHD00</td>
<td align="left">[X]Myelodysplastic syndrome, unspecified</td>
</tr>
<tr>
<td align="left">D213.00</td>
<td align="left">Refractory Anaemia</td>
</tr>
</tbody>
</table>
<h4>Secondary care diagnoses (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//secondary_care/ICD_MDS.csv'>ICD_MDS.csv</a>)</h4>
<table>
<thead>
<tr>
<th>ICD-10 code</th>
<th>ICD-10 Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left">D46</td>
<td align="left">Myelodysplastic syndromes</td>
</tr>
</tbody>
</table>
<h2>Myocardial infarction</h2>
<h4>Implementation</h4>
~~~
Use MODIFIED CALIBER 'Myocardial infarction' phenotyping algorithm:
At the specified date, a patient is considered to have had a 'Myocardial infarction' IF they meet any of the criteria below on or before the specified date.
The earliest date on which the individual meets any of the following criteria on or before the specified date is defined as the first event date.
1. Primary care diagnosis of MI: myo_infarct_gprd: category 1, category 2, category 3, category 4, category 5, category 6, category 7
2. Secondary care diagnosis of MI: myo_infarct_hes: category 1, category 5, category 6, category 7
3. Secondary care procedure code for coronary thrombolysis: lysis_opcs category 2
~~~
<h4>Primary care (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//primary_care/CPRD_myocardial_infarction.csv'>CPRD_myocardial_infarction.csv</a>)</h4>
<table>
<thead>
<tr>
<th>Read code</th>
<th>Read Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left">14A3.00</td>
<td align="left">H/O: myocardial infarct <60</td>
</tr>
<tr>
<td align="left">14A4.00</td>
<td align="left">H/O: myocardial infarct >60</td>
</tr>
<tr>
<td align="left">14AH.00</td>
<td align="left">H/O: Myocardial infarction in last year</td>
</tr>
<tr>
<td align="left">G310.00</td>
<td align="left">Postmyocardial infarction syndrome</td>
</tr>
<tr>
<td align="left">G32..00</td>
<td align="left">Old myocardial infarction</td>
</tr>
<tr>
<td align="left">G32..11</td>
<td align="left">Healed myocardial infarction</td>
</tr>
<tr>
<td align="left">G32..12</td>
<td align="left">Personal history of myocardial infarction</td>
</tr>
<tr>
<td align="left">G33z500</td>
<td align="left">Post infarct angina</td>
</tr>
<tr>
<td align="left">G30..11</td>
<td align="left">Attack - heart</td>
</tr>
<tr>
<td align="left">G30..14</td>
<td align="left">Heart attack</td>
</tr>
<tr>
<td align="left">G30..17</td>
<td align="left">Silent myocardial infarction</td>
</tr>
<tr>
<td align="left">G30A.00</td>
<td align="left">Mural thrombosis</td>
</tr>
<tr>
<td align="left">G30X000</td>
<td align="left">Acute ST segment elevation myocardial infarction</td>
</tr>
<tr>
<td align="left">G307100</td>
<td align="left">Acute non-ST segment elevation myocardial infarction</td>
</tr>
<tr>
<td align="left">323..00</td>
<td align="left">ECG: myocardial infarction</td>
</tr>
<tr>
<td align="left">3233</td>
<td align="left">ECG: antero-septal infarct.</td>
</tr>
<tr>
<td align="left">3234</td>
<td align="left">ECG:posterior/inferior infarct</td>
</tr>
<tr>
<td align="left">3235</td>
<td align="left">ECG: subendocardial infarct</td>
</tr>
<tr>
<td align="left">3236</td>
<td align="left">ECG: lateral infarction</td>
</tr>
<tr>
<td align="left">323Z.00</td>
<td align="left">ECG: myocardial infarct NOS</td>
</tr>
<tr>
<td align="left">889A.00</td>
<td align="left">Diab mellit insulin-glucose infus acute myocardial infarct</td>
</tr>
<tr>
<td align="left">G30..00</td>
<td align="left">Acute myocardial infarction</td>
</tr>
<tr>
<td align="left">G30..12</td>
<td align="left">Coronary thrombosis</td>
</tr>
<tr>
<td align="left">G30..13</td>
<td align="left">Cardiac rupture following myocardial infarction (MI)</td>
</tr>
<tr>
<td align="left">G30..15</td>
<td align="left">MI - acute myocardial infarction</td>
</tr>
<tr>
<td align="left">G30..16</td>
<td align="left">Thrombosis - coronary</td>
</tr>
<tr>
<td align="left">G300.00</td>
<td align="left">Acute anterolateral infarction</td>
</tr>
<tr>
<td align="left">G301.00</td>
<td align="left">Other specified anterior myocardial infarction</td>
</tr>
<tr>
<td align="left">G301000</td>
<td align="left">Acute anteroapical infarction</td>
</tr>
<tr>
<td align="left">G301100</td>
<td align="left">Acute anteroseptal infarction</td>
</tr>
<tr>
<td align="left">G301z00</td>
<td align="left">Anterior myocardial infarction NOS</td>
</tr>
<tr>
<td align="left">G302.00</td>
<td align="left">Acute inferolateral infarction</td>
</tr>
<tr>
<td align="left">G303.00</td>
<td align="left">Acute inferoposterior infarction</td>
</tr>
<tr>
<td align="left">G304.00</td>
<td align="left">Posterior myocardial infarction NOS</td>
</tr>
<tr>
<td align="left">G305.00</td>
<td align="left">Lateral myocardial infarction NOS</td>
</tr>
<tr>
<td align="left">G306.00</td>
<td align="left">True posterior myocardial infarction</td>
</tr>
<tr>
<td align="left">G307.00</td>
<td align="left">Acute subendocardial infarction</td>
</tr>
<tr>
<td align="left">G307000</td>
<td align="left">Acute non-Q wave infarction</td>
</tr>
<tr>
<td align="left">G308.00</td>
<td align="left">Inferior myocardial infarction NOS</td>
</tr>
<tr>
<td align="left">G309.00</td>
<td align="left">Acute Q-wave infarct</td>
</tr>
<tr>
<td align="left">G30B.00</td>
<td align="left">Acute posterolateral myocardial infarction</td>
</tr>
<tr>
<td align="left">G30X.00</td>
<td align="left">Acute transmural myocardial infarction of unspecif site</td>
</tr>
<tr>
<td align="left">G30y.00</td>
<td align="left">Other acute myocardial infarction</td>
</tr>
<tr>
<td align="left">G30y000</td>
<td align="left">Acute atrial infarction</td>
</tr>
<tr>
<td align="left">G30y100</td>
<td align="left">Acute papillary muscle infarction</td>
</tr>
<tr>
<td align="left">G30y200</td>
<td align="left">Acute septal infarction</td>
</tr>
<tr>
<td align="left">G30yz00</td>
<td align="left">Other acute myocardial infarction NOS</td>
</tr>
<tr>
<td align="left">G30z.00</td>
<td align="left">Acute myocardial infarction NOS</td>
</tr>
<tr>
<td align="left">G31y100</td>
<td align="left">Microinfarction of heart</td>
</tr>
<tr>
<td align="left">G38..00</td>
<td align="left">Postoperative myocardial infarction</td>
</tr>
<tr>
<td align="left">G380.00</td>
<td align="left">Postoperative transmural myocardial infarction anterior wall</td>
</tr>
<tr>
<td align="left">G381.00</td>
<td align="left">Postoperative transmural myocardial infarction inferior wall</td>
</tr>
<tr>
<td align="left">G384.00</td>
<td align="left">Postoperative subendocardial myocardial infarction</td>
</tr>
<tr>
<td align="left">G38z.00</td>
<td align="left">Postoperative myocardial infarction, unspecified</td>
</tr>
<tr>
<td align="left">Gyu3400</td>
<td align="left">[X]Acute transmural myocardial infarction of unspecif site</td>
</tr>
<tr>
<td align="left">G35..00</td>
<td align="left">Subsequent myocardial infarction</td>
</tr>
<tr>
<td align="left">G350.00</td>
<td align="left">Subsequent myocardial infarction of anterior wall</td>
</tr>
<tr>
<td align="left">G351.00</td>
<td align="left">Subsequent myocardial infarction of inferior wall</td>
</tr>
<tr>
<td align="left">G353.00</td>
<td align="left">Subsequent myocardial infarction of other sites</td>
</tr>
<tr>
<td align="left">G35X.00</td>
<td align="left">Subsequent myocardial infarction of unspecified site</td>
</tr>
<tr>
<td align="left">G310.11</td>
<td align="left">Dressler's syndrome</td>
</tr>
<tr>
<td align="left">G36..00</td>
<td align="left">Certain current complication follow acute myocardial infarct</td>
</tr>
<tr>
<td align="left">G360.00</td>
<td align="left">Haemopericardium/current comp folow acut myocard infarct</td>
</tr>
<tr>
<td align="left">G361.00</td>
<td align="left">Atrial septal defect/curr comp folow acut myocardal infarct</td>
</tr>
<tr>
<td align="left">G362.00</td>
<td align="left">Ventric septal defect/curr comp fol acut myocardal infarctn</td>
</tr>
<tr>
<td align="left">G363.00</td>
<td align="left">Ruptur cardiac wall w'out haemopericard/cur comp fol ac MI</td>
</tr>
<tr>
<td align="left">G364.00</td>
<td align="left">Ruptur chordae tendinae/curr comp fol acute myocard infarct</td>
</tr>
<tr>
<td align="left">G365.00</td>
<td align="left">Rupture papillary muscle/curr comp fol acute myocard infarct</td>
</tr>
<tr>
<td align="left">G366.00</td>
<td align="left">Thrombosis atrium,auric append&vent/curr comp foll acute MI</td>
</tr>
<tr>
<td align="left">G501.00</td>
<td align="left">Post infarction pericarditis</td>
</tr>
</tbody>
</table>
<h4>Secondary care diagnoses (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//secondary_care/ICD_myocardial_infarction.csv'>ICD_myocardial_infarction.csv</a>)</h4>
<table>
<thead>
<tr>
<th>ICD-10 code</th>
<th>ICD-10 Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left">I252</td>
<td align="left">Old myocardial infarction</td>
</tr>
<tr>
<td align="left">I21</td>
<td align="left">Acute myocardial infarction</td>
</tr>
<tr>
<td align="left">I22</td>
<td align="left">Subsequent myocardial infarction</td>
</tr>
<tr>
<td align="left">I23</td>
<td align="left">Certain current complications following acute myocardial infarction</td>
</tr>
<tr>
<td align="left">I241</td>
<td align="left">Dressler's syndrome</td>
</tr>
</tbody>
</table>
<h2>Nasal polyp</h2>
<h4>Implementation</h4>
~~~
At the specified date, a patient is defined as having had Nasal polyp IF they meet the criteria for any of the following on or before the specified date. The earliest date on which the individual meets any of the following criteria on or before the specified date is defined as the first event date:
Primary care
1. Nasal polyp diagnosis or history of diagnosis or procedure during a consultation
OR
Secondary care (ICD10)
1. ALL diagnoses of Nasal polyp or history of diagnosis during a hospitalization
~~~
<h4>Primary care (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//primary_care/CPRD_nasal_polyp.csv'>CPRD_nasal_polyp.csv</a>)</h4>
<table>
<thead>
<tr>
<th>Read code</th>
<th>Read Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left">2D33.00</td>
<td align="left">O/E - nasal polyp present</td>
</tr>
<tr>
<td align="left">7402900.0</td>
<td align="left">Excision of polyp of nasal septum</td>
</tr>
<tr>
<td align="left">7402911.0</td>
<td align="left">Nasal septum polypectomy</td>
</tr>
<tr>
<td align="left">7406000.0</td>
<td align="left">Nasal polypectomy</td>
</tr>
<tr>
<td align="left">7406700.0</td>
<td align="left">Nasal polypectomy using auto-debrider</td>
</tr>
<tr>
<td align="left">7416F00</td>
<td align="left">Functional endoscopic sinus surg - polypectomy nasal sinus</td>
</tr>
<tr>
<td align="left">H110000</td>
<td align="left">Choanal polyp</td>
</tr>
<tr>
<td align="left">H110100</td>
<td align="left">Nasopharyngeal polyp</td>
</tr>
<tr>
<td align="left">H110.00</td>
<td align="left">Polyp of nasal cavity</td>
</tr>
<tr>
<td align="left">H110z00</td>
<td align="left">Polyp of nasal cavity NOS</td>
</tr>
<tr>
<td align="left">H111000</td>
<td align="left">Woakes' ethmoiditis</td>
</tr>
<tr>
<td align="left">H111.00</td>
<td align="left">Polypoid sinus degeneration</td>
</tr>
<tr>
<td align="left">H111z00</td>
<td align="left">Polypoid sinus degeneration NOS</td>
</tr>
<tr>
<td align="left">H11..00</td>
<td align="left">Nasal polyps</td>
</tr>
<tr>
<td align="left">H11y000</td>
<td align="left">Polyp of frontal sinus</td>
</tr>
<tr>
<td align="left">H11y100</td>
<td align="left">Polyp of ethmoidal sinus</td>
</tr>
<tr>
<td align="left">H11y200</td>
<td align="left">Polyp of maxillary sinus</td>
</tr>
<tr>
<td align="left">H11y211</td>
<td align="left">Antral (maxillary) polyp</td>
</tr>
<tr>
<td align="left">H11y300</td>
<td align="left">Polyp of sphenoidal sinus</td>
</tr>
<tr>
<td align="left">H11y.00</td>
<td align="left">Other polyp of sinus</td>
</tr>
<tr>
<td align="left">H11y.11</td>
<td align="left">Nasal sinus polyps</td>
</tr>
<tr>
<td align="left">H11yz00</td>
<td align="left">Other polyp of sinus NOS</td>
</tr>
<tr>
<td align="left">H11z.00</td>
<td align="left">Nasal polyp NOS</td>
</tr>
<tr>
<td align="left">Hyu2300</td>
<td align="left">[X]Other polyp of sinus</td>
</tr>
</tbody>
</table>
<h4>Secondary care diagnoses (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//secondary_care/ICD_nasal_polyp.csv'>ICD_nasal_polyp.csv</a>)</h4>
<table>
<thead>
<tr>
<th>ICD-10 code</th>
<th>ICD-10 Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left">J33</td>
<td align="left">Nasal polyp</td>
</tr>
</tbody>
</table>
<h2>Neonatal jaundice (excl haemolytic dz of the newborn)</h2>
<h4>Implementation</h4>
~~~
At the specified date, a patient is defined as having had 'Neonatal jaundice (excl haemolytic dz of the newborn)' (excl haemolytic dz of the newborn) IF they meet the criteria for any of the following on or before the specified date. The earliest date on which the individual meets any of the following criteria on or before the specified date is defined as the first event date:
Primary care
1. 'Neonatal jaundice (excl haemolytic dz of the newborn)' (excl haemolytic dz of the newborn) diagnosis or history of diagnosis during a consultation AND IF the patient is aged < 1y at the first event date
OR
Secondary care
1. ALL diagnoses of 'Neonatal jaundice (excl haemolytic dz of the newborn)' (excl haemolytic dz of the newborn) or history of diagnosis during a hospitalization AND IF the patient is aged < 1y at the first event date
~~~
<h4>Primary care (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//primary_care/CPRD_neo_jaundice.csv'>CPRD_neo_jaundice.csv</a>)</h4>
<table>
<thead>
<tr>
<th>Read code</th>
<th>Read Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left">Q430000</td>
<td align="left">Neonatal jaundice + glucose-6-phosphate dehydrogenase defic.</td>
</tr>
<tr>
<td align="left">Q430.00</td>
<td align="left">Perinatal jaundice from hereditary haemolytic anaemias</td>
</tr>
<tr>
<td align="left">Q430z00</td>
<td align="left">Perinatal jaundice from hereditary haemolytic anaemia NOS</td>
</tr>
<tr>
<td align="left">Q431000</td>
<td align="left">Perinatal jaundice from bruising</td>
</tr>
<tr>
<td align="left">Q431200</td>
<td align="left">Perinatal jaundice from infection</td>
</tr>
<tr>
<td align="left">Q431300</td>
<td align="left">Perinatal jaundice from polycythaemia</td>
</tr>
<tr>
<td align="left">Q431500</td>
<td align="left">Perinatal jaundice from bleeding</td>
</tr>
<tr>
<td align="left">Q431.00</td>
<td align="left">Perinatal jaundice from other excessive haemolysis</td>
</tr>
<tr>
<td align="left">Q431z00</td>
<td align="left">Perinatal jaundice from haemolysis NOS</td>
</tr>
<tr>
<td align="left">Q432.00</td>
<td align="left">Preterm delivery associated jaundice</td>
</tr>
<tr>
<td align="left">Q433000</td>
<td align="left">Delayed conjugation causing neonatal jaundice, unspecified</td>
</tr>
<tr>
<td align="left">Q433200</td>
<td align="left">Breast feeding inhibitors causing neonatal jaundice</td>
</tr>
<tr>
<td align="left">Q433300</td>
<td align="left">Lucy - Driscoll syndrome</td>
</tr>
<tr>
<td align="left">Q433500</td>
<td align="left">Neonatal jaundice with Dubin-Johnson syndrome</td>
</tr>
<tr>
<td align="left">Q433600</td>
<td align="left">Neonatal jaundice with Gilbert's syndrome</td>
</tr>
<tr>
<td align="left">Q433700</td>
<td align="left">Neonatal jaundice with congenital hypothyroidism</td>
</tr>
<tr>
<td align="left">Q433800</td>
<td align="left">Neonatal jaundice with porphyria</td>
</tr>
<tr>
<td align="left">Q433A00</td>
<td align="left">Neonatal jaundice from breast milk inhibitor</td>
</tr>
<tr>
<td align="left">Q433.00</td>
<td align="left">Other neonatal jaundice - delayed conjugation other cause</td>
</tr>
<tr>
<td align="left">Q433y00</td>
<td align="left">Delayed conjugation causing neonatal jaundice OS</td>
</tr>
<tr>
<td align="left">Q433y11</td>
<td align="left">Neonatal jaundice - deficiency enzyme for bilirubin conjug.</td>
</tr>
<tr>
<td align="left">Q433z00</td>
<td align="left">Delayed conjugation causing neonatal jaundice NOS</td>
</tr>
<tr>
<td align="left">Q434000</td>
<td align="left">Perinatal hepatitis causing jaundice, unspecified</td>
</tr>
<tr>
<td align="left">Q434100</td>
<td align="left">Giant cell hepatitis causing neonatal jaundice</td>
</tr>
<tr>
<td align="left">Q434200</td>
<td align="left">Inspissated bile syndrome</td>
</tr>
<tr>
<td align="left">Q434.00</td>
<td align="left">Perinatal jaundice due to hepatocellular damage</td>
</tr>
<tr>
<td align="left">Q434z00</td>
<td align="left">Perinatal jaundice due to hepatocellular damage NOS</td>
</tr>
<tr>
<td align="left">Q435000</td>
<td align="left">Perinatal jaundice due to congenital obstruction bile duct</td>
</tr>
<tr>
<td align="left">Q435100</td>
<td align="left">Perinatal jaundice due to galactosaemia</td>
</tr>
<tr>
<td align="left">Q435.00</td>
<td align="left">Perinatal jaundice due to other cause</td>
</tr>
<tr>
<td align="left">Q435z00</td>
<td align="left">Perinatal jaundice due to other specified cause</td>
</tr>
<tr>
<td align="left">Q436000</td>
<td align="left">Icterus neonatorum, unspecified</td>
</tr>
<tr>
<td align="left">Q436100</td>
<td align="left">Transient neonatal hyperbilirubinaemia</td>
</tr>
<tr>
<td align="left">Q436200</td>
<td align="left">Newborn physiological jaundice NOS</td>
</tr>
<tr>
<td align="left">Q436.00</td>
<td align="left">Fetal and neonatal jaundice, unspecified</td>
</tr>
<tr>
<td align="left">Q436z00</td>
<td align="left">Unspecified fetal or neonatal jaundice NOS</td>
</tr>
<tr>
<td align="left">Q437000</td>
<td align="left">Bilirubin encephalopathy</td>
</tr>
<tr>
<td align="left">Q437.00</td>
<td align="left">Kernicterus not due to isoimmunisation</td>
</tr>
<tr>
<td align="left">Q437z00</td>
<td align="left">Kernicterus of newborn NOS</td>
</tr>
<tr>
<td align="left">Q43..00</td>
<td align="left">Other perinatal jaundice</td>
</tr>
<tr>
<td align="left">Q43z.00</td>
<td align="left">Perinatal jaundice NOS</td>
</tr>
<tr>
<td align="left">Qyu5800</td>
<td align="left">[X]Neonat jaun due/drg,toxn transmit frm mother/given newbrn</td>
</tr>
<tr>
<td align="left">Qyu5900</td>
<td align="left">[X]Neonatal jaundice due/other specifd excessive haemolysis</td>
</tr>
<tr>
<td align="left">Qyu5A00</td>
<td align="left">[X]Neonatal jaundice from other+unspcf hepatocellular damage</td>
</tr>
<tr>
<td align="left">Qyu5B00</td>
<td align="left">[X]Neonatal jaundice from other specified causes</td>
</tr>
</tbody>
</table>
<h4>Secondary care diagnoses (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//secondary_care/ICD_neo_jaundice.csv'>ICD_neo_jaundice.csv</a>)</h4>
<table>
<thead>
<tr>
<th>ICD-10 code</th>
<th>ICD-10 Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left">P58</td>
<td align="left">Neonatal jaundice due to other excessive haemolysis</td>
</tr>
<tr>
<td align="left">P59</td>
<td align="left">Neonatal jaundice from other and unspecified causes</td>
</tr>
</tbody>
</table>
<h2>Neuromuscular dysfunction of bladder</h2>
<h4>Implementation</h4>
~~~
At the specified date, a patient is defined as having had Neuromuscular dysfunction of bladder IF they meet the criteria for any of the following on or before the specified date. The earliest date on which the individual meets any of the following criteria on or before the specified date is defined as the first event date:
Primary care
1. Neuromuscular dysfunction of bladder diagnosis or history of diagnosis during a consultation
OR
Secondary care
1. ALL diagnoses of Neuromuscular dysfunction of bladder or history of diagnosis during a hospitalization
~~~
<h4>Primary care (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//primary_care/CPRD_neuro_bladder.csv'>CPRD_neuro_bladder.csv</a>)</h4>
<table>
<thead>
<tr>
<th>Read code</th>
<th>Read Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left">F246111</td>
<td align="left">Atonic bladder</td>
</tr>
<tr>
<td align="left">F246112</td>
<td align="left">Neurogenic bladder</td>
</tr>
<tr>
<td align="left">F246113</td>
<td align="left">Neuropathic bladder</td>
</tr>
<tr>
<td align="left">K164000</td>
<td align="left">Hypotonic bladder</td>
</tr>
<tr>
<td align="left">K164100</td>
<td align="left">Bladder inertia</td>
</tr>
<tr>
<td align="left">K164.00</td>
<td align="left">Atony of bladder</td>
</tr>
<tr>
<td align="left">K164.11</td>
<td align="left">Atonic bladder</td>
</tr>
<tr>
<td align="left">K164z00</td>
<td align="left">Atony of bladder NOS</td>
</tr>
<tr>
<td align="left">K165000</td>
<td align="left">Hypertonic bladder sphincter</td>
</tr>
<tr>
<td align="left">K165100</td>
<td align="left">Bladder sphincter paralysis</td>
</tr>
<tr>
<td align="left">K165300</td>
<td align="left">Detrusor instability</td>
</tr>
<tr>
<td align="left">K165400</td>
<td align="left">Unstable bladder</td>
</tr>
<tr>
<td align="left">K165.00</td>
<td align="left">Other functional disorder of bladder</td>
</tr>
<tr>
<td align="left">K165z00</td>
<td align="left">Other bladder function disorder NOS</td>
</tr>
<tr>
<td align="left">K16V000</td>
<td align="left">Neuropathic bladder</td>
</tr>
<tr>
<td align="left">K16V011</td>
<td align="left">Neurogenic bladder</td>
</tr>
<tr>
<td align="left">K16V100</td>
<td align="left">Overactive bladder</td>
</tr>
<tr>
<td align="left">K16V.00</td>
<td align="left">Neuromuscular dysfunction of bladder, unspecified</td>
</tr>
<tr>
<td align="left">K16W.00</td>
<td align="left">Reflex neuropathic bladder, not elsewhere classified</td>
</tr>
<tr>
<td align="left">K16X.00</td>
<td align="left">Uninhibited neuropathic bladder, NEC</td>
</tr>
<tr>
<td align="left">K16y400</td>
<td align="left">Irritable bladder</td>
</tr>
<tr>
<td align="left">K16y411</td>
<td align="left">Detrusor instability</td>
</tr>
<tr>
<td align="left">K16y412</td>
<td align="left">Unstable bladder</td>
</tr>
<tr>
<td align="left">K16y800</td>
<td align="left">Functional disorder of bladder</td>
</tr>
<tr>
<td align="left">K16y811</td>
<td align="left">Functional voiding disorder</td>
</tr>
<tr>
<td align="left">Kyu5200</td>
<td align="left">[X]Other neuromuscular dysfunction of bladder</td>
</tr>
<tr>
<td align="left">Kyu5E00</td>
<td align="left">[X]Neuromuscular dysfunction of bladder, unspecified</td>
</tr>
</tbody>
</table>
<h4>Secondary care diagnoses (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//secondary_care/ICD_neuro_bladder.csv'>ICD_neuro_bladder.csv</a>)</h4>
<table>
<thead>
<tr>
<th>ICD-10 code</th>
<th>ICD-10 Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left">N31</td>
<td align="left">Neuromuscular dysfunction of bladder, not elsewhere classified</td>
</tr>
</tbody>
</table>
<h2>Non-Hodgkin Lymphoma</h2>
<h4>Implementation</h4>
~~~
At the specified date, a patient is defined as having had 'Non-Hodgkin Lymphoma' IF they meet the criteria for any of the following on or before the specified date. The earliest date on which the individual meets any of the following criteria on or before the specified date is defined as the first event date:
Primary care
1. 'Non-Hodgkin Lymphoma' diagnosis or history of diagnosis during a consultation
OR
Secondary care
1. ALL diagnoses of 'Non-Hodgkin Lymphoma' or history of diagnosis during a hospitalization
~~~
<h4>Primary care (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//primary_care/CPRD_NHL.csv'>CPRD_NHL.csv</a>)</h4>
<table>
<thead>
<tr>
<th>Read code</th>
<th>Read Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left">A789600</td>
<td align="left">HIV disease resulting in Burkitt's lymphoma</td>
</tr>
<tr>
<td align="left">A789700</td>
<td align="left">HIV dis resulting oth types of non-Hodgkin's lymphoma</td>
</tr>
<tr>
<td align="left">AyuC600</td>
<td align="left">[X]HIV disease resulting in other non-Hodgkin's lymphoma</td>
</tr>
<tr>
<td align="left">B600000</td>
<td align="left">Reticulosarcoma of unspecified site</td>
</tr>
<tr>
<td align="left">B600100</td>
<td align="left">Reticulosarcoma of lymph nodes of head, face and neck</td>
</tr>
<tr>
<td align="left">B600300</td>
<td align="left">Reticulosarcoma of intra-abdominal lymph nodes</td>
</tr>
<tr>
<td align="left">B600700</td>
<td align="left">Reticulosarcoma of spleen</td>
</tr>
<tr>
<td align="left">B600.00</td>
<td align="left">Reticulosarcoma</td>
</tr>
<tr>
<td align="left">B600z00</td>
<td align="left">Reticulosarcoma NOS</td>
</tr>
<tr>
<td align="left">B601000</td>
<td align="left">Lymphosarcoma of unspecified site</td>
</tr>
<tr>
<td align="left">B601100</td>
<td align="left">Lymphosarcoma of lymph nodes of head, face and neck</td>
</tr>
<tr>
<td align="left">B601200</td>
<td align="left">Lymphosarcoma of intrathoracic lymph nodes</td>
</tr>
<tr>
<td align="left">B601300</td>
<td align="left">Lymphosarcoma of intra-abdominal lymph nodes</td>
</tr>
<tr>
<td align="left">B601500</td>
<td align="left">Lymphosarcoma of lymph nodes of inguinal region and leg</td>
</tr>
<tr>
<td align="left">B601700</td>
<td align="left">Lymphosarcoma of spleen</td>
</tr>
<tr>
<td align="left">B601800</td>
<td align="left">Lymphosarcoma of lymph nodes of multiple sites</td>
</tr>
<tr>
<td align="left">B601.00</td>
<td align="left">Lymphosarcoma</td>
</tr>
<tr>
<td align="left">B601z00</td>
<td align="left">Lymphosarcoma NOS</td>
</tr>
<tr>
<td align="left">B602100</td>
<td align="left">Burkitt's lymphoma of lymph nodes of head, face and neck</td>
</tr>
<tr>
<td align="left">B602200</td>
<td align="left">Burkitt's lymphoma of intrathoracic lymph nodes</td>
</tr>
<tr>
<td align="left">B602300</td>
<td align="left">Burkitt's lymphoma of intra-abdominal lymph nodes</td>
</tr>
<tr>
<td align="left">B602500</td>
<td align="left">Burkitt's lymphoma of lymph nodes of inguinal region and leg</td>
</tr>
<tr>
<td align="left">B602.00</td>
<td align="left">Burkitt's lymphoma</td>
</tr>
<tr>
<td align="left">B602z00</td>
<td align="left">Burkitt's lymphoma NOS</td>
</tr>
<tr>
<td align="left">B60..00</td>
<td align="left">Lymphosarcoma and reticulosarcoma</td>
</tr>
<tr>
<td align="left">B60y.00</td>
<td align="left">Other specified reticulosarcoma or lymphosarcoma</td>
</tr>
<tr>
<td align="left">B60z.00</td>
<td align="left">Reticulosarcoma or lymphosarcoma NOS</td>
</tr>
<tr>
<td align="left">B620000</td>
<td align="left">Nodular lymphoma of unspecified site</td>
</tr>
<tr>
<td align="left">B620100</td>
<td align="left">Nodular lymphoma of lymph nodes of head, face and neck</td>
</tr>
<tr>
<td align="left">B620200</td>
<td align="left">Nodular lymphoma of intrathoracic lymph nodes</td>
</tr>
<tr>
<td align="left">B620300</td>
<td align="left">Nodular lymphoma of intra-abdominal lymph nodes</td>
</tr>
<tr>
<td align="left">B620500</td>
<td align="left">Nodular lymphoma of lymph nodes of inguinal region and leg</td>
</tr>
<tr>
<td align="left">B620800</td>
<td align="left">Nodular lymphoma of lymph nodes of multiple sites</td>
</tr>
<tr>
<td align="left">B620.00</td>
<td align="left">Nodular lymphoma (Brill - Symmers disease)</td>
</tr>
<tr>
<td align="left">B620z00</td>
<td align="left">Nodular lymphoma NOS</td>
</tr>
<tr>
<td align="left">B621000</td>
<td align="left">Mycosis fungoides of unspecified site</td>
</tr>
<tr>
<td align="left">B621300</td>
<td align="left">Mycosis fungoides of intra-abdominal lymph nodes</td>
</tr>
<tr>
<td align="left">B621400</td>
<td align="left">Mycosis fungoides of lymph nodes of axilla and upper limb</td>
</tr>
<tr>
<td align="left">B621500</td>
<td align="left">Mycosis fungoides of lymph nodes of inguinal region and leg</td>
</tr>
<tr>
<td align="left">B621800</td>
<td align="left">Mycosis fungoides of lymph nodes of multiple sites</td>
</tr>
<tr>
<td align="left">B621.00</td>
<td align="left">Mycosis fungoides</td>
</tr>
<tr>
<td align="left">B621z00</td>
<td align="left">Mycosis fungoides NOS</td>
</tr>
<tr>
<td align="left">B622.00</td>
<td align="left">Sezary's disease</td>
</tr>
<tr>
<td align="left">B622z00</td>
<td align="left">Sezary's disease NOS</td>
</tr>
<tr>
<td align="left">B627000</td>
<td align="left">Follicular non-Hodgkin's small cleaved cell lymphoma</td>
</tr>
<tr>
<td align="left">B627100</td>
<td align="left">Follicular non-Hodg mixed sml cleavd & lge cell lymphoma</td>
</tr>
<tr>
<td align="left">B627200</td>
<td align="left">Follicular non-Hodgkin's large cell lymphoma</td>
</tr>
<tr>
<td align="left">B627300</td>
<td align="left">Diffuse non-Hodgkin's small cell (diffuse) lymphoma</td>
</tr>
<tr>
<td align="left">B627400</td>
<td align="left">Diffuse non-Hodgkin's small cleaved cell (diffuse) lymphoma</td>
</tr>
<tr>
<td align="left">B627500</td>
<td align="left">Diffuse non-Hodgkin mixed sml & lge cell (diffuse) lymphoma</td>
</tr>
<tr>
<td align="left">B627600</td>
<td align="left">Diffuse non-Hodgkin's immunoblastic (diffuse) lymphoma</td>
</tr>
<tr>
<td align="left">B627700</td>
<td align="left">Diffuse non-Hodgkin's lymphoblastic (diffuse) lymphoma</td>
</tr>
<tr>
<td align="left">B627800</td>
<td align="left">Diffuse non-Hodgkin's lymphoma undifferentiated (diffuse)</td>
</tr>
<tr>
<td align="left">B627900</td>
<td align="left">Mucosa-associated lymphoma</td>
</tr>
<tr>
<td align="left">B627911</td>
<td align="left">Maltoma</td>
</tr>
<tr>
<td align="left">B627A00</td>
<td align="left">Diffuse non-Hodgkin's large cell lymphoma</td>
</tr>
<tr>
<td align="left">B627.00</td>
<td align="left">Non - Hodgkin's lymphoma</td>
</tr>
<tr>
<td align="left">B627.11</td>
<td align="left">Non-Hodgkin lymphoma</td>
</tr>
<tr>
<td align="left">B627B00</td>
<td align="left">Other types of follicular non-Hodgkin's lymphoma</td>
</tr>
<tr>
<td align="left">B627C00</td>
<td align="left">Follicular non-Hodgkin's lymphoma</td>
</tr>
<tr>
<td align="left">B627C11</td>
<td align="left">Follicular lymphoma NOS</td>
</tr>
<tr>
<td align="left">B627D00</td>
<td align="left">Diffuse non-Hodgkin's centroblastic lymphoma</td>
</tr>
<tr>
<td align="left">B627E00</td>
<td align="left">Diffuse large B-cell lymphoma</td>
</tr>
<tr>
<td align="left">B627F00</td>
<td align="left">Extranod marg zone B-cell lymphom mucosa-assoc lymphoid tiss</td>
</tr>
<tr>
<td align="left">B627G00</td>
<td align="left">Mediastinal (thymic) large B-cell lymphoma</td>
</tr>
<tr>
<td align="left">B627W00</td>
<td align="left">Unspecified B-cell non-Hodgkin's lymphoma</td>
</tr>
<tr>
<td align="left">B627X00</td>
<td align="left">Diffuse non-Hodgkin's lymphoma, unspecified</td>
</tr>
<tr>
<td align="left">B628000</td>
<td align="left">Follicular lymphoma grade 1</td>
</tr>
<tr>
<td align="left">B628100</td>
<td align="left">Follicular lymphoma grade 2</td>
</tr>
<tr>
<td align="left">B628200</td>
<td align="left">Follicular lymphoma grade 3</td>
</tr>
<tr>
<td align="left">B628300</td>
<td align="left">Follicular lymphoma grade 3a</td>
</tr>
<tr>
<td align="left">B628400</td>
<td align="left">Follicular lymphoma grade 3b</td>
</tr>
<tr>
<td align="left">B628500</td>
<td align="left">Diffuse follicle centre lymphoma</td>
</tr>
<tr>
<td align="left">B628600</td>
<td align="left">Cutaneous follicle centre lymphoma</td>
</tr>
<tr>
<td align="left">B628700</td>
<td align="left">Other types of follicular lymphoma</td>
</tr>
<tr>
<td align="left">B628.00</td>
<td align="left">Follicular lymphoma</td>
</tr>
<tr>
<td align="left">B62E100</td>
<td align="left">Anaplastic large cell lymphoma, ALK-positive</td>
</tr>
<tr>
<td align="left">B62E200</td>
<td align="left">Anaplastic large cell lymphoma, ALK-negative</td>
</tr>
<tr>
<td align="left">B62E300</td>
<td align="left">Cutaneous T-cell lymphoma</td>
</tr>
<tr>
<td align="left">B62E400</td>
<td align="left">Extranodal NK/T-cell lymphoma, nasal type</td>
</tr>
<tr>
<td align="left">B62E500</td>
<td align="left">Hepatosplenic T-cell lymphoma</td>
</tr>
<tr>
<td align="left">B62E600</td>
<td align="left">Enteropathy-associated T-cell lymphoma</td>
</tr>
<tr>
<td align="left">B62E700</td>
<td align="left">Subcutaneous panniculitic T-cell lymphoma</td>
</tr>
<tr>
<td align="left">B62E800</td>
<td align="left">Blastic NK-cell lymphoma</td>
</tr>
<tr>
<td align="left">B62E900</td>
<td align="left">Angioimmunoblastic T-cell lymphoma</td>
</tr>
<tr>
<td align="left">B62EA00</td>
<td align="left">Primary cutaneous CD30-positive T-cell proliferations</td>
</tr>
<tr>
<td align="left">B62E.00</td>
<td align="left">T/NK-cell lymphoma</td>
</tr>
<tr>
<td align="left">B62Ew00</td>
<td align="left">Other mature T/NK-cell lymphoma</td>
</tr>
<tr>
<td align="left">B62F000</td>
<td align="left">Small cell B-cell lymphoma</td>
</tr>
<tr>
<td align="left">B62F100</td>
<td align="left">Mantle cell lymphoma</td>
</tr>
<tr>
<td align="left">B62F200</td>
<td align="left">Lymphoblastic (diffuse) lymphoma</td>
</tr>
<tr>
<td align="left">B62F.00</td>
<td align="left">Nonfollicular lymphoma</td>
</tr>
<tr>
<td align="left">B62F.11</td>
<td align="left">Non-follicular lymphoma</td>
</tr>
<tr>
<td align="left">B62x000</td>
<td align="left">T-zone lymphoma</td>
</tr>
<tr>
<td align="left">B62x100</td>
<td align="left">Lymphoepithelioid lymphoma</td>
</tr>
<tr>
<td align="left">B62x200</td>
<td align="left">Peripheral T-cell lymphoma</td>
</tr>
<tr>
<td align="left">B62x400</td>
<td align="left">Malignant reticulosis</td>
</tr>
<tr>
<td align="left">B62x500</td>
<td align="left">Malignant immunoproliferative small intestinal disease</td>
</tr>
<tr>
<td align="left">B62x.00</td>
<td align="left">Malignant lymphoma otherwise specified</td>
</tr>
<tr>
<td align="left">B62xX00</td>
<td align="left">Oth and unspecif peripheral & cutaneous T-cell lymphomas</td>
</tr>
<tr>
<td align="left">B62y000</td>
<td align="left">Malignant lymphoma NOS of unspecified site</td>
</tr>
<tr>
<td align="left">B62y100</td>
<td align="left">Malignant lymphoma NOS of lymph nodes of head, face and neck</td>
</tr>
<tr>
<td align="left">B62y200</td>
<td align="left">Malignant lymphoma NOS of intrathoracic lymph nodes</td>
</tr>
<tr>
<td align="left">B62y300</td>
<td align="left">Malignant lymphoma NOS of intra-abdominal lymph nodes</td>
</tr>
<tr>
<td align="left">B62y400</td>
<td align="left">Malignant lymphoma NOS of lymph nodes of axilla and arm</td>
</tr>
<tr>
<td align="left">B62y500</td>
<td align="left">Malignant lymphoma NOS of lymph node inguinal region and leg</td>
</tr>
<tr>
<td align="left">B62y600</td>
<td align="left">Malignant lymphoma NOS of intrapelvic lymph nodes</td>
</tr>
<tr>
<td align="left">B62y700</td>
<td align="left">Malignant lymphoma NOS of spleen</td>
</tr>
<tr>
<td align="left">B62y800</td>
<td align="left">Malignant lymphoma NOS of lymph nodes of multiple sites</td>
</tr>
<tr>
<td align="left">B62y.00</td>
<td align="left">Malignant lymphoma NOS</td>
</tr>
<tr>
<td align="left">B62yz00</td>
<td align="left">Malignant lymphoma NOS</td>
</tr>
<tr>
<td align="left">BBg1000</td>
<td align="left">[M]Malignant lymphoma, diffuse NOS</td>
</tr>
<tr>
<td align="left">BBg1.00</td>
<td align="left">[M]Malignant lymphoma NOS</td>
</tr>
<tr>
<td align="left">BBg1.11</td>
<td align="left">[M]Lymphoma NOS</td>
</tr>
<tr>
<td align="left">BBg2.00</td>
<td align="left">[M]Malignant lymphoma, non Hodgkin's type</td>
</tr>
<tr>
<td align="left">BBg2.11</td>
<td align="left">[M]Non Hodgkins lymphoma</td>
</tr>
<tr>
<td align="left">BBg3.00</td>
<td align="left">[M]Malignant lymphoma, undifferentiated cell type NOS</td>
</tr>
<tr>
<td align="left">BBg4.00</td>
<td align="left">[M]Malignant lymphoma, stem cell type</td>
</tr>
<tr>
<td align="left">BBg5.00</td>
<td align="left">[M]Malignant lymphoma, convoluted cell type NOS</td>
</tr>
<tr>
<td align="left">BBg6.00</td>
<td align="left">[M]Lymphosarcoma NOS</td>
</tr>
<tr>
<td align="left">BBg7.00</td>
<td align="left">[M]Malignant lymphoma, lymphoplasmacytoid type</td>
</tr>
<tr>
<td align="left">BBg8.00</td>
<td align="left">[M]Malignant lymphoma, immunoblastic type</td>
</tr>
<tr>
<td align="left">BBgA.00</td>
<td align="left">[M]Malignant lymphoma, centroblastic-centrocytic, diffuse</td>
</tr>
<tr>
<td align="left">BBgB.00</td>
<td align="left">[M]Malignant lymphoma, follicular centre cell NOS</td>
</tr>
<tr>
<td align="left">BBg..00</td>
<td align="left">[M]Lymphomas, NOS or diffuse</td>
</tr>
<tr>
<td align="left">BBgC.00</td>
<td align="left">[M]Malignant lymphoma, lymphocytic, well differentiated NOS</td>
</tr>
<tr>
<td align="left">BBgC.11</td>
<td align="left">[M]Lymphocytic lymphoma NOS</td>
</tr>
<tr>
<td align="left">BBgC.12</td>
<td align="left">[M]Lymphocytic lymphosarcoma NOS</td>
</tr>
<tr>
<td align="left">BBgD.00</td>
<td align="left">[M]Malig lymphoma, lymphocytic, intermediate different NOS</td>
</tr>
<tr>
<td align="left">BBgE.00</td>
<td align="left">[M]Malignant lymphoma, centrocytic</td>
</tr>
<tr>
<td align="left">BBgG.00</td>
<td align="left">[M]Malignant lymphoma, lymphocytic, poorly different NOS</td>
</tr>
<tr>
<td align="left">BBgG.11</td>
<td align="left">[M]Lymphoblastic lymphosarcoma NOS</td>
</tr>
<tr>
<td align="left">BBgG.12</td>
<td align="left">[M]Lymphoblastic lymphoma NOS</td>
</tr>
<tr>
<td align="left">BBgG.13</td>
<td align="left">[M]Lymphoblastoma NOS</td>
</tr>
<tr>
<td align="left">BBgH.00</td>
<td align="left">[M]Prolymphocytic lymphosarcoma</td>
</tr>
<tr>
<td align="left">BBgJ.00</td>
<td align="left">[M]Malignant lymphoma, centroblastic type NOS</td>
</tr>
<tr>
<td align="left">BBgK.00</td>
<td align="left">[M]Malig lymphoma, follicular centre cell, non-cleaved NOS</td>
</tr>
<tr>
<td align="left">BBgL.00</td>
<td align="left">[M]Malignant lymphoma, small lymphocytic NOS</td>
</tr>
<tr>
<td align="left">BBgM.00</td>
<td align="left">[M]Malignant lymphoma, small cleaved cell, diffuse</td>
</tr>
<tr>
<td align="left">BBgN.00</td>
<td align="left">[M]Malign lymphoma,lymphocytic,intermediate differn, diffuse</td>
</tr>
<tr>
<td align="left">BBgP.00</td>
<td align="left">[M]Malignant lymphoma, mixed small and large cell, diffuse</td>
</tr>
<tr>
<td align="left">BBgQ.00</td>
<td align="left">[M]Malignant lymphomatous polyposis</td>
</tr>
<tr>
<td align="left">BBgR.00</td>
<td align="left">[M]Malignant lymphoma, large cell, diffuse NOS</td>
</tr>
<tr>
<td align="left">BBgS.00</td>
<td align="left">[M]Malignant lymphoma, large cell, cleaved, diffuse</td>
</tr>
<tr>
<td align="left">BBgT.00</td>
<td align="left">[M]Malignant lymphoma, large cell, noncleaved, diffuse</td>
</tr>
<tr>
<td align="left">BBgV.00</td>
<td align="left">[M]Malignant lymphoma, small cell, noncleaved, diffuse</td>
</tr>
<tr>
<td align="left">BBgz.00</td>
<td align="left">[M]Lymphoma, diffuse or NOS</td>
</tr>
<tr>
<td align="left">BBh0.00</td>
<td align="left">[M]Reticulosarcoma NOS</td>
</tr>
<tr>
<td align="left">BBh2.00</td>
<td align="left">[M]Reticulosarcoma, nodular</td>
</tr>
<tr>
<td align="left">BBh..00</td>
<td align="left">[M]Reticulosarcomas</td>
</tr>
<tr>
<td align="left">BBk0.00</td>
<td align="left">[M]Malignant lymphoma, nodular NOS</td>
</tr>
<tr>
<td align="left">BBk0.11</td>
<td align="left">[M]Brill - Symmers' disease</td>
</tr>
<tr>
<td align="left">BBk0.12</td>
<td align="left">[M]Follicular lymphosarcoma NOS</td>
</tr>
<tr>
<td align="left">BBk0.13</td>
<td align="left">[M]Giant follicular lymphoma</td>
</tr>
<tr>
<td align="left">BBk2.00</td>
<td align="left">[M]Malignant lymphoma, centroblastic-centrocytic, follicular</td>
</tr>
<tr>
<td align="left">BBk3.00</td>
<td align="left">[M]Malig lymphoma, lymphocytic, well differentiated,nodular</td>
</tr>
<tr>
<td align="left">BBk5.00</td>
<td align="left">[M]Malig lymp, follicular centre cell, cleaved, follicular</td>
</tr>
<tr>
<td align="left">BBk7.00</td>
<td align="left">[M]Malignant lymphoma, centroblastic type, follicular</td>
</tr>
<tr>
<td align="left">BBk8.00</td>
<td align="left">[M]Malig lymp,follicular centre cell,noncleaved,follicular</td>
</tr>
<tr>
<td align="left">BBk..00</td>
<td align="left">[M]Lymphomas, nodular or follicular</td>
</tr>
<tr>
<td align="left">BBkz.00</td>
<td align="left">[M]Lymphoma, nodular or follicular NOS</td>
</tr>
<tr>
<td align="left">BBl0.00</td>
<td align="left">[M]Mycosis fungoides</td>
</tr>
<tr>
<td align="left">BBl1.00</td>
<td align="left">[M]Sezary's disease</td>
</tr>
<tr>
<td align="left">BBl..00</td>
<td align="left">[M]Mycosis fungoides</td>
</tr>
<tr>
<td align="left">BBlz.00</td>
<td align="left">[M]Mycosis fungoides NOS</td>
</tr>
<tr>
<td align="left">BBm0.00</td>
<td align="left">[M]Microglioma</td>
</tr>
<tr>
<td align="left">BBm1.11</td>
<td align="left">[M]Malignant reticulosis</td>
</tr>
<tr>
<td align="left">BBm5.00</td>
<td align="left">[M] Peripheral T-cell lymphoma NOS</td>
</tr>
<tr>
<td align="left">BBm8.00</td>
<td align="left">[M] Angioimmunoblastic lymphadenopathy</td>
</tr>
<tr>
<td align="left">BBm9.00</td>
<td align="left">[M] Monocytoid B-cell lymphoma</td>
</tr>
<tr>
<td align="left">BBmD.00</td>
<td align="left">[M] Cutaneous lymphoma</td>
</tr>
<tr>
<td align="left">BBmF.00</td>
<td align="left">[M] Angiocentric immunoproliferative lesion</td>
</tr>
<tr>
<td align="left">BBmH.00</td>
<td align="left">[M] Large cell lymphoma</td>
</tr>
<tr>
<td align="left">BBmJ.00</td>
<td align="left">[M] Angioendotheliomatosis</td>
</tr>
<tr>
<td align="left">BBv0.00</td>
<td align="left">[M]Monocytoid B-cell lymphoma</td>
</tr>
<tr>
<td align="left">BBv2.00</td>
<td align="left">[M]AngiocentricT-cell lymphoma</td>
</tr>
<tr>
<td align="left">ByuD100</td>
<td align="left">[X]Other types of follicular non-Hodgkin's lymphoma</td>
</tr>
<tr>
<td align="left">ByuD200</td>
<td align="left">[X]Other types of diffuse non-Hodgkin's lymphoma</td>
</tr>
<tr>
<td align="left">ByuD300</td>
<td align="left">[X]Other specified types of non-Hodgkin's lymphoma</td>
</tr>
<tr>
<td align="left">ByuDC00</td>
<td align="left">[X]Diffuse non-Hodgkin's lymphoma, unspecified</td>
</tr>
<tr>
<td align="left">ByuDD00</td>
<td align="left">[X]Oth and unspecif peripheral & cutaneous T-cell lymphomas</td>
</tr>
<tr>
<td align="left">ByuDE00</td>
<td align="left">[X]Unspecified B-cell non-Hodgkin's lymphoma</td>
</tr>
<tr>
<td align="left">ByuDF00</td>
<td align="left">[X]Non-Hodgkin's lymphoma, unspecified type</td>
</tr>
<tr>
<td align="left">ByuDF11</td>
<td align="left">[X]Non-Hodgkin's lymphoma NOS</td>
</tr>
<tr>
<td align="left">M162800</td>
<td align="left">Lymphomatoid papulosis</td>
</tr>
</tbody>
</table>
<h4>Secondary care diagnoses (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//secondary_care/ICD_NHL.csv'>ICD_NHL.csv</a>)</h4>
<table>
<thead>
<tr>
<th>ICD-10 code</th>
<th>ICD-10 Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left">C82</td>
<td align="left">Follicular lymphoma</td>
</tr>
<tr>
<td align="left">C83</td>
<td align="left">Non-follicular lymphoma</td>
</tr>
<tr>
<td align="left">C84</td>
<td align="left">Mature T/NK-cell lymphomas</td>
</tr>
<tr>
<td align="left">C85</td>
<td align="left">Other and unspecified types of non-Hodgkin lymphoma</td>
</tr>
<tr>
<td align="left">C86</td>
<td align="left">Other specified types of T/NK-cell lymphoma</td>
</tr>
</tbody>
</table>
<h2>Non-acute cystitis</h2>
<h4>Implementation</h4>
~~~
At the specified date, a patient is defined as having had Non-acute cystitis IF they meet the criteria for any of the following on or before the specified date. The earliest date on which the individual meets any of the following criteria on or before the specified date is defined as the first event date:
Primary care
1. Non-acute cystitis diagnosis or history of diagnosis during a consultation
OR
Secondary care
1. ALL diagnoses of Non-acute cystitis or history of diagnosis during a hospitalization
~~~
<h4>Primary care (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//primary_care/CPRD_chr_cystitis.csv'>CPRD_chr_cystitis.csv</a>)</h4>
<table>
<thead>
<tr>
<th>Read code</th>
<th>Read Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left">K151000</td>
<td align="left">Hunner's ulcer</td>
</tr>
<tr>
<td align="left">K151200</td>
<td align="left">Submucous cystitis</td>
</tr>
<tr>
<td align="left">K151.00</td>
<td align="left">Chronic interstitial cystitis</td>
</tr>
<tr>
<td align="left">K151z00</td>
<td align="left">Chronic interstitial cystitis NOS</td>
</tr>
<tr>
<td align="left">K152000</td>
<td align="left">Subacute cystitis</td>
</tr>
<tr>
<td align="left">K152.00</td>
<td align="left">Other chronic cystitis</td>
</tr>
<tr>
<td align="left">K152y00</td>
<td align="left">Chronic cystitis unspecified</td>
</tr>
<tr>
<td align="left">K152z00</td>
<td align="left">Other chronic cystitis NOS</td>
</tr>
<tr>
<td align="left">K153.11</td>
<td align="left">Follicular cystitis</td>
</tr>
<tr>
<td align="left">K15y000</td>
<td align="left">Cystitis cystica</td>
</tr>
<tr>
<td align="left">Kyu5000</td>
<td align="left">[X]Other chronic cystitis</td>
</tr>
</tbody>
</table>
<h4>Secondary care diagnoses (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//secondary_care/ICD_chr_cystitis.csv'>ICD_chr_cystitis.csv</a>)</h4>
<table>
<thead>
<tr>
<th>ICD-10 code</th>
<th>ICD-10 Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left">N30.1</td>
<td align="left">Interstitial cystitis (chronic)</td>
</tr>
<tr>
<td align="left">N30.2</td>
<td align="left">Other chronic cystitis</td>
</tr>
</tbody>
</table>
<h2>Nonrheumatic aortic valve disorders</h2>
<h4>Implementation</h4>
~~~
At the specified date, a patient is defined as having had 'Nonrheumatic aortic valve disorders' IF they meet the criteria for any of the following on or before the specified date. The earliest date on which the individual meets any of the following criteria on or before the specified date is defined as the first event date:
Primary care
1. 'Nonrheumatic aortic valve disorders' diagnosis or history of diagnosis during a consultation
OR
Secondary care (ICD10)
1. ALL diagnoses of 'Nonrheumatic aortic valve disorders' or history of diagnosis during a hospitalization
~~~
<h4>Primary care (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//primary_care/CPRD_nonRh_aortic.csv'>CPRD_nonRh_aortic.csv</a>)</h4>
<table>
<thead>
<tr>
<th>Read code</th>
<th>Read Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left">G541000</td>
<td align="left">Aortic incompetence, non-rheumatic</td>
</tr>
<tr>
<td align="left">G541011</td>
<td align="left">Aortic insufficiency, non-rheumatic</td>
</tr>
<tr>
<td align="left">G541012</td>
<td align="left">Aortic regurgitation, non-rheumatic</td>
</tr>
<tr>
<td align="left">G541100</td>
<td align="left">Aortic stenosis, non-rheumatic</td>
</tr>
<tr>
<td align="left">G541200</td>
<td align="left">Aortic incompetence alone, cause unspecified</td>
</tr>
<tr>
<td align="left">G541211</td>
<td align="left">Aortic insufficiency alone, cause unspecified</td>
</tr>
<tr>
<td align="left">G541212</td>
<td align="left">Aortic regurgitation alone, cause unspecified</td>
</tr>
<tr>
<td align="left">G541300</td>
<td align="left">Aortic stenosis alone, cause unspecified</td>
</tr>
<tr>
<td align="left">G541400</td>
<td align="left">Aortic valve stenosis with insufficiency</td>
</tr>
<tr>
<td align="left">G541500</td>
<td align="left">Aortic stenosis</td>
</tr>
<tr>
<td align="left">G541600</td>
<td align="left">Aortic valve sclerosis</td>
</tr>
<tr>
<td align="left">G541700</td>
<td align="left">Aortic valve calcification</td>
</tr>
<tr>
<td align="left">G541.00</td>
<td align="left">Aortic valve disorders</td>
</tr>
<tr>
<td align="left">G541z00</td>
<td align="left">Aortic valve disorders NOS</td>
</tr>
<tr>
<td align="left">Gyu1100</td>
<td align="left">[X]Other rheumatic aortic valve diseases</td>
</tr>
<tr>
<td align="left">Gyu5600</td>
<td align="left">[X]Other aortic valve disorders</td>
</tr>
<tr>
<td align="left">Gyu5A00</td>
<td align="left">[X]Aortic valve disorders in diseases classified elsewhere</td>
</tr>
</tbody>
</table>
<h4>Secondary care diagnoses (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//secondary_care/ICD_nonRh_aortic.csv'>ICD_nonRh_aortic.csv</a>)</h4>
<table>
<thead>
<tr>
<th>ICD-10 code</th>
<th>ICD-10 Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left">I35</td>
<td align="left">Nonrheumatic aortic valve disorders</td>
</tr>
</tbody>
</table>
<h2>Nonrheumatic mitral valve disorders</h2>
<h4>Implementation</h4>
~~~
At the specified date, a patient is defined as having had 'Nonrheumatic mitral valve disorders' IF they meet the criteria for any of the following on or before the specified date. The earliest date on which the individual meets any of the following criteria on or before the specified date is defined as the first event date:
Primary care
1. 'Nonrheumatic mitral valve disorders' diagnosis or history of diagnosis during a consultation
OR
Secondary care (ICD10)
1. ALL diagnoses of 'Nonrheumatic mitral valve disorders' or history of diagnosis during a hospitalization
~~~
<h4>Primary care (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//primary_care/CPRD_nonRh_mitral.csv'>CPRD_nonRh_mitral.csv</a>)</h4>
<table>
<thead>
<tr>
<th>Read code</th>
<th>Read Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left">G114.00</td>
<td align="left">Ruptured mitral valve cusp</td>
</tr>
<tr>
<td align="left">G11..00</td>
<td align="left">Mitral valve diseases</td>
</tr>
<tr>
<td align="left">G11z.00</td>
<td align="left">Mitral valve disease NOS</td>
</tr>
<tr>
<td align="left">G540000</td>
<td align="left">Mitral incompetence, non-rheumatic</td>
</tr>
<tr>
<td align="left">G540100</td>
<td align="left">Mitral incompetence, cause unspecified</td>
</tr>
<tr>
<td align="left">G540200</td>
<td align="left">Mitral valve prolapse</td>
</tr>
<tr>
<td align="left">G540300</td>
<td align="left">Mitral valve leaf prolapse</td>
</tr>
<tr>
<td align="left">G540.00</td>
<td align="left">Mitral valve incompetence</td>
</tr>
<tr>
<td align="left">G540.12</td>
<td align="left">Mitral valve insufficiency</td>
</tr>
<tr>
<td align="left">G540.14</td>
<td align="left">Mitral valve regurgitation</td>
</tr>
<tr>
<td align="left">G540.15</td>
<td align="left">Mitral valve prolapse</td>
</tr>
<tr>
<td align="left">G540.16</td>
<td align="left">Mitral regurgitation</td>
</tr>
<tr>
<td align="left">G540z00</td>
<td align="left">Mitral valve disorders NOS</td>
</tr>
<tr>
<td align="left">Gyu1000</td>
<td align="left">[X]Other mitral valve diseases</td>
</tr>
<tr>
<td align="left">Gyu5500</td>
<td align="left">[X]Other nonrheumatic mitral valve disorders</td>
</tr>
</tbody>
</table>
<h4>Secondary care diagnoses (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//secondary_care/ICD_nonRh_mitral.csv'>ICD_nonRh_mitral.csv</a>)</h4>
<table>
<thead>
<tr>
<th>ICD-10 code</th>
<th>ICD-10 Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left">I34</td>
<td align="left">Nonrheumatic mitral valve disorders</td>
</tr>
</tbody>
</table>
<h2>Obesity</h2>
<h4>Implementation</h4>
~~~
At the specified date, a patient is defined as having had 'Obesity' IF they meet the criteria for any of the following on or before the specified date. The earliest date on which the individual meets any of the following criteria on or before the specified date is defined as the first event date:
Primary care
1. 'Obesity' diagnosis or history of diagnosis or procedure during a consultation
OR
2. IF enttype = 13 (Weight) available on or before specified date AND data3 not missing, BMI = data3. If BMI > 30, patient is defined as having had 'Obesity'.
OR
3. If enttype = 13 (Weight) available on or before specified date AND data3 missing, BMI = data1 (enttype 13) /(data2 ^2) (enttype 14 = Height). If BMI > 30, patient is defined as having had 'Obesity'. IF height not available on same eventdate as weight, use most recent height for age > 18 years.
OR
Secondary care (ICD10)
1. ALL diagnoses of 'Obesity' or history of diagnosis during a hospitalization
~~~
<h4>Primary care (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//primary_care/CPRD_obesity.csv'>CPRD_obesity.csv</a>)</h4>
<table>
<thead>
<tr>
<th>Read code</th>
<th>Read Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="right">1444</td>
<td align="left">H/O: obesity</td>
</tr>
<tr>
<td align="left">212Q.00</td>
<td align="left">Obesity resolved</td>
</tr>
<tr>
<td align="left">222A.00</td>
<td align="left">O/E - obese</td>
</tr>
<tr>
<td align="left">22A5.11</td>
<td align="left">O/E - obese</td>
</tr>
<tr>
<td align="left">22K5.00</td>
<td align="left">Body mass index 30+ - obesity</td>
</tr>
<tr>
<td align="left">22K7.00</td>
<td align="left">Body mass index 40+ - severely obese</td>
</tr>
<tr>
<td align="left">66C1.00</td>
<td align="left">Initial obesity assessment</td>
</tr>
<tr>
<td align="left">66C2.00</td>
<td align="left">Follow-up obesity assessment</td>
</tr>
<tr>
<td align="left">66C4.00</td>
<td align="left">Has seen dietician - obesity</td>
</tr>
<tr>
<td align="left">66C5.00</td>
<td align="left">Treatment of obesity changed</td>
</tr>
<tr>
<td align="left">66C6.00</td>
<td align="left">Treatment of obesity started</td>
</tr>
<tr>
<td align="left">66C..00</td>
<td align="left">Obesity monitoring</td>
</tr>
<tr>
<td align="left">66CE.00</td>
<td align="left">Reason for obesity therapy - occupational</td>
</tr>
<tr>
<td align="left">66CZ.00</td>
<td align="left">Obesity monitoring NOS</td>
</tr>
<tr>
<td align="left">7633.00</td>
<td align="left">Bypass of jejunum</td>
</tr>
<tr>
<td align="left">7611400.0</td>
<td align="left">Sleeve gastrectomy and duodenal switch</td>
</tr>
<tr>
<td align="left">7611500.0</td>
<td align="left">Sleeve gastrectomy NEC</td>
</tr>
<tr>
<td align="left">7611600.0</td>
<td align="left">Laparoscopic sleeve gastrectomy</td>
</tr>
<tr>
<td align="left">7613100.0</td>
<td align="left">Partitioning of stomach</td>
</tr>
<tr>
<td align="left">7613111.0</td>
<td align="left">Mason vertical banded gastroplasty</td>
</tr>
<tr>
<td align="left">7613200.0</td>
<td align="left">Laparoscopic adjustable gastric banding</td>
</tr>
<tr>
<td align="left">7613300.0</td>
<td align="left">Partitioning of stomach using band</td>
</tr>
<tr>
<td align="left">7613400.0</td>
<td align="left">Partitioning of stomach using staples</td>
</tr>
<tr>
<td align="left">7613500.0</td>
<td align="left">Partitioning of stomach NEC</td>
</tr>
<tr>
<td align="left">7613600.0</td>
<td align="left">Maintenance of gastric band</td>
</tr>
<tr>
<td align="left">7614100.0</td>
<td align="left">Bypass of stomach by anastomosis of stomach to duodenum</td>
</tr>
<tr>
<td align="left">7615000.0</td>
<td align="left">Bypass stomach by anastomosis stomach to transposed jejunum</td>
</tr>
<tr>
<td align="left">7616000.0</td>
<td align="left">Bypass of stomach by anastomosis of stomach to jejunum NEC</td>
</tr>
<tr>
<td align="left">7616013.0</td>
<td align="left">Mason high gastric bypass</td>
</tr>
<tr>
<td align="left">7616015.0</td>
<td align="left">Printer high gastric bypass</td>
</tr>
<tr>
<td align="left">7616600.0</td>
<td align="left">Laparoscopic gastric bypass</td>
</tr>
<tr>
<td align="left">7633000.0</td>
<td align="left">Bypass of jejunum by anastomosis of jejunum to jejunum</td>
</tr>
<tr>
<td align="left">7633100.0</td>
<td align="left">Bypass of jejunum by anastomosis of jejunum to ileum</td>
</tr>
<tr>
<td align="left">7633200.0</td>
<td align="left">Bypass of jejunum by anastomosis of jejunum to colon</td>
</tr>
<tr>
<td align="left">7642500.0</td>
<td align="left">Duodenal switch</td>
</tr>
<tr>
<td align="left">761A500</td>
<td align="left">Removal of gastric band</td>
</tr>
<tr>
<td align="left">7633y00</td>
<td align="left">Other specified bypass of jejunum</td>
</tr>
<tr>
<td align="left">7633z00</td>
<td align="left">Bypass of jejunum NOS</td>
</tr>
<tr>
<td align="left">9OK1.00</td>
<td align="left">Attends obesity monitoring</td>
</tr>
<tr>
<td align="left">9OK2.00</td>
<td align="left">Refuses obesity monitoring</td>
</tr>
<tr>
<td align="left">9OK3.00</td>
<td align="left">Obesity monitoring default</td>
</tr>
<tr>
<td align="left">9OK4.00</td>
<td align="left">Obesity monitoring 1st letter</td>
</tr>
<tr>
<td align="left">9OK5.00</td>
<td align="left">Obesity monitoring 2nd letter</td>
</tr>
<tr>
<td align="left">9OK6.00</td>
<td align="left">Obesity monitoring 3rd letter</td>
</tr>
<tr>
<td align="left">9OK7.00</td>
<td align="left">Obesity monitoring verbal inv.</td>
</tr>
<tr>
<td align="left">9OK8.00</td>
<td align="left">Obesity monitor phone invite</td>
</tr>
<tr>
<td align="left">9OK..00</td>
<td align="left">Obesity monitoring admin.</td>
</tr>
<tr>
<td align="left">9OK..11</td>
<td align="left">Obesity clinic administration</td>
</tr>
<tr>
<td align="left">9OKA.00</td>
<td align="left">Obesity monitoring check done</td>
</tr>
<tr>
<td align="left">9OKZ.00</td>
<td align="left">Obesity monitoring admin.NOS</td>
</tr>
<tr>
<td align="left">C380000</td>
<td align="left">Obesity due to excess calories</td>
</tr>
<tr>
<td align="left">C380100</td>
<td align="left">Drug-induced obesity</td>
</tr>
<tr>
<td align="left">C380200</td>
<td align="left">Extreme obesity with alveolar hypoventilation</td>
</tr>
<tr>
<td align="left">C380300</td>
<td align="left">Morbid obesity</td>
</tr>
<tr>
<td align="left">C380400</td>
<td align="left">Central obesity</td>
</tr>
<tr>
<td align="left">C380500</td>
<td align="left">Generalised obesity</td>
</tr>
<tr>
<td align="left">C380600</td>
<td align="left">Adult-onset obesity</td>
</tr>
<tr>
<td align="left">C380700</td>
<td align="left">Lifelong obesity</td>
</tr>
<tr>
<td align="left">C380.00</td>
<td align="left">Obesity</td>
</tr>
<tr>
<td align="left">C38..00</td>
<td align="left">Obesity and other hyperalimentation</td>
</tr>
<tr>
<td align="left">C38y000</td>
<td align="left">Pickwickian syndrome</td>
</tr>
<tr>
<td align="left">C38y011</td>
<td align="left">Obesity hypoventilation syndrome</td>
</tr>
<tr>
<td align="left">C38y.11</td>
<td align="left">Pickwickian syndrome</td>
</tr>
<tr>
<td align="left">C38z000</td>
<td align="left">Simple obesity NOS</td>
</tr>
<tr>
<td align="left">C38z.00</td>
<td align="left">Obesity and other hyperalimentation NOS</td>
</tr>
<tr>
<td align="left">Cyu7000</td>
<td align="left">[X]Other obesity</td>
</tr>
<tr>
<td align="left">Cyu7.00</td>
<td align="left">[X]Obesity and other hyperalimentation</td>
</tr>
<tr>
<td align="left">ZC2CM00</td>
<td align="left">Dietary advice for obesity</td>
</tr>
<tr>
<td align="left">ZV45P00</td>
<td align="left">[V]Presence of gastric bypass</td>
</tr>
<tr>
<td align="left">ZV65319</td>
<td align="left">[V]Dietary counselling in obesity</td>
</tr>
</tbody>
</table>
<h4>Secondary care diagnoses (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//secondary_care/ICD_obesity.csv'>ICD_obesity.csv</a>)</h4>
<table>
<thead>
<tr>
<th>ICD-10 code</th>
<th>ICD-10 Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left">E66</td>
<td align="left">Obesity</td>
</tr>
</tbody>
</table>
<h2>Obsessive-compulsive disorder</h2>
<h4>Implementation</h4>
~~~
At the specified date, a patient is defined as having had 'Obsessive-compulsive disorder' IF they meet the criteria for any of the following on or before the specified date. The earliest date on which the individual meets any of the following criteria on or before the specified date is defined as the first event date:
Primary care
1. 'Obsessive-compulsive disorder' diagnosis or history of diagnosis during a consultation
OR
Secondary care
1. ALL diagnoses of 'Obsessive-compulsive disorder' or history of diagnosis during a hospitalization
~~~
<h4>Primary care (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//primary_care/CPRD_ocd.csv'>CPRD_ocd.csv</a>)</h4>
<table>
<thead>
<tr>
<th>Read code</th>
<th>Read Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left">E203000</td>
<td align="left">Compulsive neurosis</td>
</tr>
<tr>
<td align="left">E203100</td>
<td align="left">Obsessional neurosis</td>
</tr>
<tr>
<td align="left">E203.00</td>
<td align="left">Obsessive-compulsive disorders</td>
</tr>
<tr>
<td align="left">E203.11</td>
<td align="left">Anancastic neurosis</td>
</tr>
<tr>
<td align="left">E203z00</td>
<td align="left">Obsessive-compulsive disorder NOS</td>
</tr>
<tr>
<td align="left">Eu42000</td>
<td align="left">[X]Predominantly obsessional thoughts or ruminations</td>
</tr>
<tr>
<td align="left">Eu42100</td>
<td align="left">[X]Predominantly compulsive acts [obsessional rituals]</td>
</tr>
<tr>
<td align="left">Eu42200</td>
<td align="left">[X]Mixed obsessional thoughts and acts</td>
</tr>
<tr>
<td align="left">Eu42.00</td>
<td align="left">[X]Obsessive - compulsive disorder</td>
</tr>
<tr>
<td align="left">Eu42.11</td>
<td align="left">[X]Anankastic neurosis</td>
</tr>
<tr>
<td align="left">Eu42.12</td>
<td align="left">[X]Obsessive-compulsive neurosis</td>
</tr>
<tr>
<td align="left">Eu42y00</td>
<td align="left">[X]Other obsessive-compulsive disorders</td>
</tr>
<tr>
<td align="left">Eu42z00</td>
<td align="left">[X]Obsessive-compulsive disorder, unspecified</td>
</tr>
</tbody>
</table>
<h4>Secondary care diagnoses (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//secondary_care/ICD_ocd.csv'>ICD_ocd.csv</a>)</h4>
<table>
<thead>
<tr>
<th>ICD-10 code</th>
<th>ICD-10 Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left">F42</td>
<td align="left">Obsessive-compulsive disorder</td>
</tr>
</tbody>
</table>
<h2>Obstructive and reflux uropathy</h2>
<h4>Implementation</h4>
~~~
At the specified date, a patient is defined as having had 'Obstructive and reflux uropathy' IF they meet the criteria for any of the following on or before the specified date. The earliest date on which the individual meets any of the following criteria on or before the specified date is defined as the first event date:
Primary care
1. 'Obstructive and reflux uropathy' diagnosis or history of diagnosis during a consultation
OR
Secondary care
1. ALL diagnoses of 'Obstructive and reflux uropathy' or history of diagnosis during a hospitalization
~~~
<h4>Primary care (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//primary_care/CPRD_obstr_reflux.csv'>CPRD_obstr_reflux.csv</a>)</h4>
<table>
<thead>
<tr>
<th>Read code</th>
<th>Read Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left">K110.00</td>
<td align="left">Hydrocalycosis</td>
</tr>
<tr>
<td align="left">K111.00</td>
<td align="left">Hydroureteronephrosis</td>
</tr>
<tr>
<td align="left">K112.00</td>
<td align="left">Hydronephrosis with renal and ureteral calculous obstruction</td>
</tr>
<tr>
<td align="left">K113.00</td>
<td align="left">Hydronephrosis with ureteropelvic junction obstruction</td>
</tr>
<tr>
<td align="left">K113.11</td>
<td align="left">Hydronephrosis with pelviureteric junction obstruction</td>
</tr>
<tr>
<td align="left">K11..00</td>
<td align="left">Hydronephrosis</td>
</tr>
<tr>
<td align="left">K11X.00</td>
<td align="left">Hydronephrosis with ureteral stricture NEC</td>
</tr>
<tr>
<td align="left">K11z.00</td>
<td align="left">Hydronephrosis NOS</td>
</tr>
<tr>
<td align="left">K133000</td>
<td align="left">Postoperative ureteric constriction</td>
</tr>
<tr>
<td align="left">K133100</td>
<td align="left">Stricture of pelviureteric junction</td>
</tr>
<tr>
<td align="left">K133.00</td>
<td align="left">Stricture of ureter</td>
</tr>
<tr>
<td align="left">K133z00</td>
<td align="left">Stricture of ureter NOS</td>
</tr>
<tr>
<td align="left">K134000</td>
<td align="left">Idiopathic retroperitoneal fibrosis</td>
</tr>
<tr>
<td align="left">K134.00</td>
<td align="left">Other ureteric obstruction</td>
</tr>
<tr>
<td align="left">K134z00</td>
<td align="left">Occlusion of ureter NOS</td>
</tr>
<tr>
<td align="left">K135.00</td>
<td align="left">Hydroureter</td>
</tr>
<tr>
<td align="left">K137.00</td>
<td align="left">Vesicoureteric reflux</td>
</tr>
<tr>
<td align="left">K137.11</td>
<td align="left">Ureteric reflux</td>
</tr>
<tr>
<td align="left">K196.00</td>
<td align="left">Urinary obstruction unspecified</td>
</tr>
<tr>
<td align="left">K196.11</td>
<td align="left">Obstructive uropathy, unspecified</td>
</tr>
<tr>
<td align="left">Kyu1100</td>
<td align="left">[X]Other and unspecified hydronephrosis</td>
</tr>
<tr>
<td align="left">Kyu1200</td>
<td align="left">[X]Other obstructive and reflux uropathy</td>
</tr>
<tr>
<td align="left">Kyu1300</td>
<td align="left">[X]Obstructive and reflux uropathy, unspecified</td>
</tr>
<tr>
<td align="left">Kyu1F00</td>
<td align="left">[X]Hydronephrosis with ureteral stricture NEC</td>
</tr>
</tbody>
</table>
<h4>Secondary care diagnoses (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//secondary_care/ICD_obstr_reflux.csv'>ICD_obstr_reflux.csv</a>)</h4>
<table>
<thead>
<tr>
<th>ICD-10 code</th>
<th>ICD-10 Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left">N13.0</td>
<td align="left">Hydronephrosis with ureteropelvic junction obstruction</td>
</tr>
<tr>
<td align="left">N13.1</td>
<td align="left">Hydronephrosis with ureteral stricture, not elsewhere classified</td>
</tr>
<tr>
<td align="left">N13.2</td>
<td align="left">Hydronephrosis with renal and ureteral calculous obstruction</td>
</tr>
<tr>
<td align="left">N13.3</td>
<td align="left">Other and unspecified hydronephrosis</td>
</tr>
<tr>
<td align="left">N13.4</td>
<td align="left">Hydroureter</td>
</tr>
<tr>
<td align="left">N13.5</td>
<td align="left">Kinking and stricture of ureter without hydronephrosis</td>
</tr>
<tr>
<td align="left">N13.6</td>
<td align="left">Pyonephrosis</td>
</tr>
<tr>
<td align="left">N13.7</td>
<td align="left">Vesicoureteral-reflux-associated uropathy</td>
</tr>
<tr>
<td align="left">N13.8</td>
<td align="left">Other obstructive and reflux uropathy</td>
</tr>
<tr>
<td align="left">N13.9</td>
<td align="left">Obstructive and reflux uropathy, unspecified</td>
</tr>
</tbody>
</table>
<h2>Oesophageal varices</h2>
<h4>Implementation</h4>
~~~
At the specified date, a patient is defined as having had 'Oesophageal varices' IF they meet the criteria for any of the following on or before the specified date. The earliest date on which the individual meets any of the following criteria on or before the specified date is defined as the first event date:
Primary care
1. 'Oesophageal varices' diagnosis or history of diagnosis or procedure during a consultation
OR
Secondary care
1. ALL diagnoses of 'Oesophageal varices' or history of diagnosis during a hospitalization
OR
Secondary care (OPCS4)
1. ALL procedures for 'Oesophageal varices' during a hospitalization
~~~
<h4>Primary care (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//primary_care/CPRD_varices.csv'>CPRD_varices.csv</a>)</h4>
<table>
<thead>
<tr>
<th>Read code</th>
<th>Read Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="right">7609300</td>
<td align="left">Local ligation of oesophageal varices</td>
</tr>
<tr>
<td align="right">7609400</td>
<td align="left">Open injection sclerotherapy to oesophageal varices</td>
</tr>
<tr>
<td align="right">7609</td>
<td align="left">Open operations on oesophageal varices</td>
</tr>
<tr>
<td align="left">7609y00</td>
<td align="left">Other specified open operation on oesophageal varices</td>
</tr>
<tr>
<td align="left">7609y11</td>
<td align="left">Tanner devascularisation for bleeding varices</td>
</tr>
<tr>
<td align="left">7609z00</td>
<td align="left">Open operation on oesophageal varices NOS</td>
</tr>
<tr>
<td align="left">760C300</td>
<td align="left">Fibreoptic endoscopic injection sclerotherapy oesoph varices</td>
</tr>
<tr>
<td align="left">760C500</td>
<td align="left">Fibreoptic endoscopic banding of oesophageal varices</td>
</tr>
<tr>
<td align="left">760F300</td>
<td align="left">Rigid oesophagoscopic injection sclerotherapy oesoph varices</td>
</tr>
<tr>
<td align="left">760F400</td>
<td align="left">Rigid oesophagoscopic banding of oesophageal varices</td>
</tr>
<tr>
<td align="left">761D800</td>
<td align="left">Fibreopt endoscop rubber band ligation of upper GIT varices</td>
</tr>
<tr>
<td align="left">G850.00</td>
<td align="left">Oesophageal varices with bleeding</td>
</tr>
<tr>
<td align="left">G851.00</td>
<td align="left">Oesophageal varices without bleeding</td>
</tr>
<tr>
<td align="left">G852000</td>
<td align="left">Oesophageal varices with bleeding in diseases EC</td>
</tr>
<tr>
<td align="left">G852100</td>
<td align="left">Oesophageal varices without bleeding in diseases EC</td>
</tr>
<tr>
<td align="left">G852200</td>
<td align="left">Oesophageal varices in cirrhosis of the liver</td>
</tr>
<tr>
<td align="left">G852300</td>
<td align="left">Oesophageal varices in alcoholic cirrhosis of the liver</td>
</tr>
<tr>
<td align="left">G852.00</td>
<td align="left">Oesophageal varices in diseases EC</td>
</tr>
<tr>
<td align="left">G852z00</td>
<td align="left">Oesophageal varices in diseases EC NOS</td>
</tr>
<tr>
<td align="left">G858.00</td>
<td align="left">Oesophageal varices NOS</td>
</tr>
<tr>
<td align="left">G85..11</td>
<td align="left">Oesophageal varices</td>
</tr>
<tr>
<td align="left">Gyu9400</td>
<td align="left">[X]Oesophageal varices in diseases classified elsewhere</td>
</tr>
</tbody>
</table>
<h4>Secondary care diagnoses (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//secondary_care/ICD_varices.csv'>ICD_varices.csv</a>)</h4>
<table>
<thead>
<tr>
<th>ICD-10 code</th>
<th>ICD-10 Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left">I85</td>
<td align="left">Oesophageal varices</td>
</tr>
<tr>
<td align="left">I98.2</td>
<td align="left">Oesophageal varices without bleeding in diseases classified elsewhere</td>
</tr>
<tr>
<td align="left">I98.3</td>
<td align="left">Oesophageal varices with bleeding in diseases classified elsewhere</td>
</tr>
</tbody>
</table>
<h4>Secondary care procedures (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//secondary_care/OPCS_varices.csv'>OPCS_varices.csv</a>)</h4>
<table>
<thead>
<tr>
<th>OPCS-4 code</th>
<th>OPCS-4 Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left">G10</td>
<td align="left">Open operations on varices of oesophagus</td>
</tr>
<tr>
<td align="left">G10.1</td>
<td align="left">Disconnection of azygos vein</td>
</tr>
<tr>
<td align="left">G10.2</td>
<td align="left">Transection of oesophagus using staple gun</td>
</tr>
<tr>
<td align="left">G10.3</td>
<td align="left">Transection of oesophagus NEC</td>
</tr>
<tr>
<td align="left">G10.4</td>
<td align="left">Local ligation of varices of oesophagus</td>
</tr>
<tr>
<td align="left">G10.5</td>
<td align="left">Open injection sclerotherapy to varices of oesophagus</td>
</tr>
<tr>
<td align="left">G10.8</td>
<td align="left">Other specified open operations on varices of oesophagus</td>
</tr>
<tr>
<td align="left">G10.9</td>
<td align="left">Unspecified open operations on varices of oesophagus</td>
</tr>
<tr>
<td align="left">G17.4</td>
<td align="left">Endoscopic injection sclerotherapy to varices of oesophagus using rigid oesophagoscope</td>
</tr>
<tr>
<td align="left">G43.7</td>
<td align="left">Fibreoptic endoscopic rubber band ligation of upper gastrointestinal tract varices</td>
</tr>
</tbody>
</table>
<h2>Oesophagitis and oesophageal ulcer</h2>
<h4>Implementation</h4>
~~~
At the specified date, a patient is defined as having had Oesophagitis and 'Oesophagitis and oesophageal ulcer' IF they meet the criteria for any of the following on or before the specified date. The earliest date on which the individual meets any of the following criteria on or before the specified date is defined as the first event date:
Primary care
1. Oesophagitis and 'Oesophagitis and oesophageal ulcer' diagnosis or history of diagnosis during a consultation
OR
Secondary care
1. ALL diagnoses of Oesophagitis and 'Oesophagitis and oesophageal ulcer' or history of diagnosis during a hospitalization
~~~
<h4>Primary care (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//primary_care/CPRD_oesoph_ulc.csv'>CPRD_oesoph_ulc.csv</a>)</h4>
<table>
<thead>
<tr>
<th>Read code</th>
<th>Read Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left">J101000</td>
<td align="left">Abscess of oesophagus</td>
</tr>
<tr>
<td align="left">J101.00</td>
<td align="left">Oesophagitis</td>
</tr>
<tr>
<td align="left">J101100</td>
<td align="left">Reflux oesophagitis</td>
</tr>
<tr>
<td align="left">J101112</td>
<td align="left">Gastro-oesophageal reflux with oesophagitis</td>
</tr>
<tr>
<td align="left">J101113</td>
<td align="left">Oesophageal reflux with oesophagitis</td>
</tr>
<tr>
<td align="left">J101114</td>
<td align="left">Peptic oesophagitis</td>
</tr>
<tr>
<td align="left">J101115</td>
<td align="left">Regurgitant oesophagitis</td>
</tr>
<tr>
<td align="left">J101200</td>
<td align="left">Chemical oesophagitis</td>
</tr>
<tr>
<td align="left">J101300</td>
<td align="left">Postoperative oesophagitis</td>
</tr>
<tr>
<td align="left">J101400</td>
<td align="left">Gangrenous oesophagitis</td>
</tr>
<tr>
<td align="left">J101500</td>
<td align="left">Phlegmonous oesophagitis</td>
</tr>
<tr>
<td align="left">J101600</td>
<td align="left">Ulcerative oesophagitis</td>
</tr>
<tr>
<td align="left">J101y00</td>
<td align="left">Other specified oesophagitis</td>
</tr>
<tr>
<td align="left">J101z00</td>
<td align="left">Oesophagitis NOS</td>
</tr>
<tr>
<td align="left">J102000</td>
<td align="left">Peptic ulcer of oesophagus</td>
</tr>
<tr>
<td align="left">J102.00</td>
<td align="left">Ulcer of oesophagus</td>
</tr>
<tr>
<td align="left">J102100</td>
<td align="left">Fungal ulcer of oesophagus</td>
</tr>
<tr>
<td align="left">J102200</td>
<td align="left">Oesophageal ulcer due to aspirin</td>
</tr>
<tr>
<td align="left">J102300</td>
<td align="left">Oesophageal ulcer due to chemicals</td>
</tr>
<tr>
<td align="left">J102400</td>
<td align="left">Oesophageal ulcer due to medicines</td>
</tr>
<tr>
<td align="left">J102z00</td>
<td align="left">Ulcer of oesophagus NOS</td>
</tr>
<tr>
<td align="left">J10y300</td>
<td align="left">Oesophageal erosions</td>
</tr>
</tbody>
</table>
<h4>Secondary care diagnoses (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//secondary_care/ICD_oesoph_ulc.csv'>ICD_oesoph_ulc.csv</a>)</h4>
<table>
<thead>
<tr>
<th>ICD-10 code</th>
<th>ICD-10 Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left">K20</td>
<td align="left">Oesophagitis</td>
</tr>
<tr>
<td align="left">K21.0</td>
<td align="left">Gastro-oesophageal reflux disease with oesophagitis</td>
</tr>
<tr>
<td align="left">K22.1</td>
<td align="left">Ulcer of oesophagus</td>
</tr>
</tbody>
</table>
<h2>Osteoarthritis (excl spine)</h2>
<h4>Implementation</h4>
~~~
At the specified date, a patient is defined as having had 'Osteoarthritis (excl spine)' (excl spine) IF they meet the criteria for any of the following on or before the specified date. The earliest date on which the individual meets any of the following criteria on or before the specified date is defined as the first event date:
Primary care
1. 'Osteoarthritis (excl spine)' (excl spine) diagnosis or history of diagnosis during a consultation
OR
Secondary care (ICD10)
1. ALL diagnoses of 'Osteoarthritis (excl spine)' (excl spine) or history of diagnosis during a hospitalization
~~~
<h4>Primary care (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//primary_care/CPRD_OA.csv'>CPRD_OA.csv</a>)</h4>
<table>
<thead>
<tr>
<th>Read code</th>
<th>Read Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left">14G2.00</td>
<td align="left">H/O: osteoarthritis</td>
</tr>
<tr>
<td align="left">2G26.00</td>
<td align="left">O/E - hands - Heberden's nodes</td>
</tr>
<tr>
<td align="left">7P20400</td>
<td align="left">Delivery of rehabilitation for osteoarthritis</td>
</tr>
<tr>
<td align="left">N050000</td>
<td align="left">Generalised osteoarthritis of unspecified site</td>
</tr>
<tr>
<td align="left">N050100</td>
<td align="left">Generalised osteoarthritis of the hand</td>
</tr>
<tr>
<td align="left">N050111</td>
<td align="left">Heberdens' nodes</td>
</tr>
<tr>
<td align="left">N050112</td>
<td align="left">Bouchards' nodes</td>
</tr>
<tr>
<td align="left">N050200</td>
<td align="left">Generalised osteoarthritis of multiple sites</td>
</tr>
<tr>
<td align="left">N050300</td>
<td align="left">Bouchard's nodes with arthropathy</td>
</tr>
<tr>
<td align="left">N050400</td>
<td align="left">Primary generalized osteoarthrosis</td>
</tr>
<tr>
<td align="left">N050500</td>
<td align="left">Secondary multiple arthrosis</td>
</tr>
<tr>
<td align="left">N050600</td>
<td align="left">Erosive osteoarthrosis</td>
</tr>
<tr>
<td align="left">N050700</td>
<td align="left">Heberden's nodes with arthropathy</td>
</tr>
<tr>
<td align="left">N050.00</td>
<td align="left">Generalised osteoarthritis - OA</td>
</tr>
<tr>
<td align="left">N050z00</td>
<td align="left">Generalised osteoarthritis NOS</td>
</tr>
<tr>
<td align="left">N051000</td>
<td align="left">Localised, primary osteoarthritis of unspecified site</td>
</tr>
<tr>
<td align="left">N051100</td>
<td align="left">Localised, primary osteoarthritis of the shoulder region</td>
</tr>
<tr>
<td align="left">N051200</td>
<td align="left">Localised, primary osteoarthritis of the upper arm</td>
</tr>
<tr>
<td align="left">N051300</td>
<td align="left">Localised, primary osteoarthritis of the forearm</td>
</tr>
<tr>
<td align="left">N051400</td>
<td align="left">Localised, primary osteoarthritis of the hand</td>
</tr>
<tr>
<td align="left">N051500</td>
<td align="left">Localised, primary osteoarthritis of the pelvic region/thigh</td>
</tr>
<tr>
<td align="left">N051600</td>
<td align="left">Localised, primary osteoarthritis of the lower leg</td>
</tr>
<tr>
<td align="left">N051700</td>
<td align="left">Localised, primary osteoarthritis of the ankle and foot</td>
</tr>
<tr>
<td align="left">N051800</td>
<td align="left">Localised, primary osteoarthritis of other specified site</td>
</tr>
<tr>
<td align="left">N051900</td>
<td align="left">Primary coxarthrosis, bilateral</td>
</tr>
<tr>
<td align="left">N051A00</td>
<td align="left">Coxarthrosis resulting from dysplasia, bilateral</td>
</tr>
<tr>
<td align="left">N051B00</td>
<td align="left">Primary gonarthrosis, bilateral</td>
</tr>
<tr>
<td align="left">N051C00</td>
<td align="left">Primary arthrosis of first carpometacarpal joints, bilateral</td>
</tr>
<tr>
<td align="left">N051D00</td>
<td align="left">Localised, primary osteoarthritis of the wrist</td>
</tr>
<tr>
<td align="left">N051E00</td>
<td align="left">Localised, primary osteoarthritis of toe</td>
</tr>
<tr>
<td align="left">N051F00</td>
<td align="left">Localised, primary osteoarthritis of elbow</td>
</tr>
<tr>
<td align="left">N051G00</td>
<td align="left">Osteoarthritis of spinal facet joint</td>
</tr>
<tr>
<td align="left">N051.00</td>
<td align="left">Localised, primary osteoarthritis</td>
</tr>
<tr>
<td align="left">N051z00</td>
<td align="left">Localised, primary osteoarthritis NOS</td>
</tr>
<tr>
<td align="left">N052000</td>
<td align="left">Localised, secondary osteoarthritis of unspecified site</td>
</tr>
<tr>
<td align="left">N052100</td>
<td align="left">Localised, secondary osteoarthritis of the shoulder region</td>
</tr>
<tr>
<td align="left">N052200</td>
<td align="left">Localised, secondary osteoarthritis of the upper arm</td>
</tr>
<tr>
<td align="left">N052300</td>
<td align="left">Localised, secondary osteoarthritis of the forearm</td>
</tr>
<tr>
<td align="left">N052400</td>
<td align="left">Localised, secondary osteoarthritis of the hand</td>
</tr>
<tr>
<td align="left">N052500</td>
<td align="left">Localised, secondary osteoarthritis of pelvic region/thigh</td>
</tr>
<tr>
<td align="left">N052511</td>
<td align="left">Coxae malum senilis</td>
</tr>
<tr>
<td align="left">N052600</td>
<td align="left">Localised, secondary osteoarthritis of the lower leg</td>
</tr>
<tr>
<td align="left">N052700</td>
<td align="left">Localised, secondary osteoarthritis of the ankle and foot</td>
</tr>
<tr>
<td align="left">N052800</td>
<td align="left">Localised, secondary osteoarthritis of other specified site</td>
</tr>
<tr>
<td align="left">N052.00</td>
<td align="left">Localised, secondary osteoarthritis</td>
</tr>
<tr>
<td align="left">N052z00</td>
<td align="left">Localised, secondary osteoarthritis NOS</td>
</tr>
<tr>
<td align="left">N053000</td>
<td align="left">Localised osteoarthritis, unspecified, of unspecified site</td>
</tr>
<tr>
<td align="left">N053100</td>
<td align="left">Localised osteoarthritis, unspecified, of shoulder region</td>
</tr>
<tr>
<td align="left">N053200</td>
<td align="left">Localised osteoarthritis, unspecified, of the upper arm</td>
</tr>
<tr>
<td align="left">N053300</td>
<td align="left">Localised osteoarthritis, unspecified, of the forearm</td>
</tr>
<tr>
<td align="left">N053400</td>
<td align="left">Localised osteoarthritis, unspecified, of the hand</td>
</tr>
<tr>
<td align="left">N053500</td>
<td align="left">Localised osteoarthritis, unspecified, pelvic region/thigh</td>
</tr>
<tr>
<td align="left">N053512</td>
<td align="left">Hip osteoarthitis NOS</td>
</tr>
<tr>
<td align="left">N053600</td>
<td align="left">Localised osteoarthritis, unspecified, of the lower leg</td>
</tr>
<tr>
<td align="left">N053611</td>
<td align="left">Patellofemoral osteoarthritis</td>
</tr>
<tr>
<td align="left">N053700</td>
<td align="left">Localised osteoarthritis, unspecified, of the ankle and foot</td>
</tr>
<tr>
<td align="left">N053800</td>
<td align="left">Localised osteoarthritis, unspecified, of other spec site</td>
</tr>
<tr>
<td align="left">N053900</td>
<td align="left">Arthrosis of first carpometacarpal joint, unspecified</td>
</tr>
<tr>
<td align="left">N053.00</td>
<td align="left">Localised osteoarthritis, unspecified</td>
</tr>
<tr>
<td align="left">N053z00</td>
<td align="left">Localised osteoarthritis, unspecified, NOS</td>
</tr>
<tr>
<td align="left">N054000</td>
<td align="left">Oligoarticular osteoarthritis, unspec, of unspecified sites</td>
</tr>
<tr>
<td align="left">N054100</td>
<td align="left">Oligoarticular osteoarthritis, unspecified, of shoulder</td>
</tr>
<tr>
<td align="left">N054200</td>
<td align="left">Oligoarticular osteoarthritis, unspecified, of upper arm</td>
</tr>
<tr>
<td align="left">N054400</td>
<td align="left">Oligoarticular osteoarthritis, unspecified, of hand</td>
</tr>
<tr>
<td align="left">N054500</td>
<td align="left">Oligoarticular osteoarthritis, unspecified, of pelvis/thigh</td>
</tr>
<tr>
<td align="left">N054600</td>
<td align="left">Oligoarticular osteoarthritis, unspecified, of lower leg</td>
</tr>
<tr>
<td align="left">N054700</td>
<td align="left">Oligoarticular osteoarthritis, unspecified, of ankle/foot</td>
</tr>
<tr>
<td align="left">N054800</td>
<td align="left">Oligoarticular osteoarthritis, unspecified, other spec sites</td>
</tr>
<tr>
<td align="left">N054900</td>
<td align="left">Oligoarticular osteoarthritis, unspecified, multiple sites</td>
</tr>
<tr>
<td align="left">N054.00</td>
<td align="left">Oligoarticular osteoarthritis, unspecified</td>
</tr>
<tr>
<td align="left">N054z00</td>
<td align="left">Osteoarthritis of more than one site, unspecified, NOS</td>
</tr>
<tr>
<td align="left">N05..00</td>
<td align="left">Osteoarthritis and allied disorders</td>
</tr>
<tr>
<td align="left">N05..11</td>
<td align="left">Osteoarthritis</td>
</tr>
<tr>
<td align="left">N05z000</td>
<td align="left">Osteoarthritis NOS, of unspecified site</td>
</tr>
<tr>
<td align="left">N05z100</td>
<td align="left">Osteoarthritis NOS, of shoulder region</td>
</tr>
<tr>
<td align="left">N05z400</td>
<td align="left">Osteoarthritis NOS, of the hand</td>
</tr>
<tr>
<td align="left">N05z411</td>
<td align="left">Finger osteoarthritis NOS</td>
</tr>
<tr>
<td align="left">N05z412</td>
<td align="left">Thumb osteoarthritis NOS</td>
</tr>
<tr>
<td align="left">N05z500</td>
<td align="left">Osteoarthritis NOS, pelvic region/thigh</td>
</tr>
<tr>
<td align="left">N05z511</td>
<td align="left">Hip osteoarthritis NOS</td>
</tr>
<tr>
<td align="left">N05z600</td>
<td align="left">Osteoarthritis NOS, of the lower leg</td>
</tr>
<tr>
<td align="left">N05z611</td>
<td align="left">Knee osteoarthritis NOS</td>
</tr>
<tr>
<td align="left">N05z700</td>
<td align="left">Osteoarthritis NOS, of ankle and foot</td>
</tr>
<tr>
<td align="left">N05z711</td>
<td align="left">Ankle osteoarthritis NOS</td>
</tr>
<tr>
<td align="left">N05z712</td>
<td align="left">Foot osteoarthritis NOS</td>
</tr>
<tr>
<td align="left">N05z713</td>
<td align="left">Toe osteoarthritis NOS</td>
</tr>
<tr>
<td align="left">N05z800</td>
<td align="left">Osteoarthritis NOS, other specified site</td>
</tr>
<tr>
<td align="left">N05z900</td>
<td align="left">Osteoarthritis NOS, of shoulder</td>
</tr>
<tr>
<td align="left">N05zA00</td>
<td align="left">Osteoarthritis NOS, of sternoclavicular joint</td>
</tr>
<tr>
<td align="left">N05zB00</td>
<td align="left">Osteoarthritis NOS, of acromioclavicular joint</td>
</tr>
<tr>
<td align="left">N05zC00</td>
<td align="left">Osteoarthritis NOS, of elbow</td>
</tr>
<tr>
<td align="left">N05zD00</td>
<td align="left">Osteoarthritis NOS, of distal radio-ulnar joint</td>
</tr>
<tr>
<td align="left">N05zE00</td>
<td align="left">Osteoarthritis NOS, of wrist</td>
</tr>
<tr>
<td align="left">N05zF00</td>
<td align="left">Osteoarthritis NOS, of MCP joint</td>
</tr>
<tr>
<td align="left">N05zG00</td>
<td align="left">Osteoarthritis NOS, of PIP joint of finger</td>
</tr>
<tr>
<td align="left">N05zH00</td>
<td align="left">Osteoarthritis NOS, of DIP joint of finger</td>
</tr>
<tr>
<td align="left">N05zJ00</td>
<td align="left">Osteoarthritis NOS, of hip</td>
</tr>
<tr>
<td align="left">N05zK00</td>
<td align="left">Osteoarthritis NOS, of sacro-iliac joint</td>
</tr>
<tr>
<td align="left">N05zL00</td>
<td align="left">Osteoarthritis NOS, of knee</td>
</tr>
<tr>
<td align="left">N05zM00</td>
<td align="left">Osteoarthritis NOS, of tibio-fibular joint</td>
</tr>
<tr>
<td align="left">N05z.00</td>
<td align="left">Osteoarthritis NOS</td>
</tr>
<tr>
<td align="left">N05z.11</td>
<td align="left">Joint degeneration</td>
</tr>
<tr>
<td align="left">N05zN00</td>
<td align="left">Osteoarthritis NOS, of ankle</td>
</tr>
<tr>
<td align="left">N05zP00</td>
<td align="left">Osteoarthritis NOS, of subtalar joint</td>
</tr>
<tr>
<td align="left">N05zQ00</td>
<td align="left">Osteoarthritis NOS, of talonavicular joint</td>
</tr>
<tr>
<td align="left">N05zR00</td>
<td align="left">Osteoarthritis NOS, of other tarsal joint</td>
</tr>
<tr>
<td align="left">N05zS00</td>
<td align="left">Osteoarthritis NOS, of 1st MTP joint</td>
</tr>
<tr>
<td align="left">N05zT00</td>
<td align="left">Osteoarthritis NOS, of lesser MTP joint</td>
</tr>
<tr>
<td align="left">N05zU00</td>
<td align="left">Osteoarthritis NOS, of IP joint of toe</td>
</tr>
<tr>
<td align="left">N05zz00</td>
<td align="left">Osteoarthritis NOS</td>
</tr>
<tr>
<td align="left">Nyu2000</td>
<td align="left">[X]Other polyarthrosis</td>
</tr>
<tr>
<td align="left">Nyu2100</td>
<td align="left">[X]Other primary coxarthrosis</td>
</tr>
<tr>
<td align="left">Nyu2200</td>
<td align="left">[X]Other dysplastic coxarthrosis</td>
</tr>
<tr>
<td align="left">Nyu2400</td>
<td align="left">[X]Other secondary coxarthrosis, bilateral</td>
</tr>
<tr>
<td align="left">Nyu2500</td>
<td align="left">[X]Other primary gonarthrosis</td>
</tr>
<tr>
<td align="left">Nyu2511</td>
<td align="left">[X] Unilateral primary gonarthrosis</td>
</tr>
<tr>
<td align="left">Nyu2700</td>
<td align="left">[X]Other secondary gonarthrosis, bilateral</td>
</tr>
<tr>
<td align="left">Nyu2800</td>
<td align="left">[X]Other secondary gonarthrosis</td>
</tr>
<tr>
<td align="left">Nyu2811</td>
<td align="left">[X] Unilateral secondary gonarthrosis</td>
</tr>
<tr>
<td align="left">Nyu2900</td>
<td align="left">[X]Other primary arthrosis of first carpometacarpal joint</td>
</tr>
<tr>
<td align="left">Nyu2D00</td>
<td align="left">[X]Other specified arthrosis</td>
</tr>
<tr>
<td align="left">Nyu2E00</td>
<td align="left">[X]Other secondary coxarthrosis</td>
</tr>
<tr>
<td align="left">Nyu2E11</td>
<td align="left">[X] Unilateral secondary coxarthrosis</td>
</tr>
<tr>
<td align="left">Nyu2.00</td>
<td align="left">[X]Arthrosis</td>
</tr>
</tbody>
</table>
<h4>Secondary care diagnoses (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//secondary_care/ICD_OA.csv'>ICD_OA.csv</a>)</h4>
<table>
<thead>
<tr>
<th>ICD-10 code</th>
<th>ICD-10 Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left">M15</td>
<td align="left">Polyarthrosis</td>
</tr>
<tr>
<td align="left">M16</td>
<td align="left">Coxarthrosis [arthrosis of hip]</td>
</tr>
<tr>
<td align="left">M17</td>
<td align="left">Gonarthrosis [arthrosis of knee]</td>
</tr>
<tr>
<td align="left">M18</td>
<td align="left">Arthrosis of first carpometacarpal joint</td>
</tr>
<tr>
<td align="left">M19</td>
<td align="left">Other arthrosis</td>
</tr>
</tbody>
</table>
<h2>Osteoporosis</h2>
<h4>Implementation</h4>
~~~
At the specified date, a patient is defined as having had Fibromatoses IF they meet the criteria for any of the following on or before the specified date. The earliest date on which the individual meets any of the following criteria on or before the specified date is defined as the first event date:
Primary care
1. Fibromatoses diagnosis or history of diagnosis or procedure during a consultation
OR
Secondary care (ICD10)
1. ALL diagnoses of Fibromatoses or history of diagnosis during a hospitalization
OR
Secondary care (OPCS4)
1. ALL procedures for Fibromatoses during a hospitalization
~~~
<h4>Primary care (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//primary_care/CPRD_osteoporosis.csv'>CPRD_osteoporosis.csv</a>)</h4>
<table>
<thead>
<tr>
<th>Read code</th>
<th>Read Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left">14GB.00</td>
<td align="left">History of osteoporosis</td>
</tr>
<tr>
<td align="left">58EG.00</td>
<td align="left">Hip DXA scan result osteoporotic</td>
</tr>
<tr>
<td align="left">58EM.00</td>
<td align="left">Lumbar DXA scan result osteoporotic</td>
</tr>
<tr>
<td align="left">58EV.00</td>
<td align="left">Femoral neck DEXA scan result osteoporotic</td>
</tr>
<tr>
<td align="left">66a..00</td>
<td align="left">Osteoporosis monitoring</td>
</tr>
<tr>
<td align="left">9kj0.00</td>
<td align="left">Bone sparing drug treatment offered for osteoporosis - ESA</td>
</tr>
<tr>
<td align="left">9kj..00</td>
<td align="left">Osteoporosis - enhanced services administration</td>
</tr>
<tr>
<td align="left">9Od0.00</td>
<td align="left">Attends osteoporosis monitoring</td>
</tr>
<tr>
<td align="left">9Od2.00</td>
<td align="left">Osteoporosis monitoring default</td>
</tr>
<tr>
<td align="left">9Od3.00</td>
<td align="left">Osteoporosis monitoring first letter</td>
</tr>
<tr>
<td align="left">9Od4.00</td>
<td align="left">Osteoporosis monitoring second letter</td>
</tr>
<tr>
<td align="left">9Od5.00</td>
<td align="left">Osteoporosis monitoring third letter</td>
</tr>
<tr>
<td align="left">9Od6.00</td>
<td align="left">Osteoporosis monitoring verbal invitation</td>
</tr>
<tr>
<td align="left">9Od7.00</td>
<td align="left">Osteoporosis monitoring telephone invitation</td>
</tr>
<tr>
<td align="left">9Od8.00</td>
<td align="left">Osteoporosis monitoring deleted</td>
</tr>
<tr>
<td align="left">9Od9.00</td>
<td align="left">Osteoporosis monitoring check done</td>
</tr>
<tr>
<td align="left">9Od..00</td>
<td align="left">Osteoporosis monitoring administration</td>
</tr>
<tr>
<td align="left">N330000</td>
<td align="left">Osteoporosis, unspecified</td>
</tr>
<tr>
<td align="left">N330100</td>
<td align="left">Senile osteoporosis</td>
</tr>
<tr>
<td align="left">N330200</td>
<td align="left">Postmenopausal osteoporosis</td>
</tr>
<tr>
<td align="left">N330300</td>
<td align="left">Idiopathic osteoporosis</td>
</tr>
<tr>
<td align="left">N330400</td>
<td align="left">Dissuse osteoporosis</td>
</tr>
<tr>
<td align="left">N330500</td>
<td align="left">Drug-induced osteoporosis</td>
</tr>
<tr>
<td align="left">N330600</td>
<td align="left">Postoophorectomy osteoporosis</td>
</tr>
<tr>
<td align="left">N330700</td>
<td align="left">Postsurgical malabsorption osteoporosis</td>
</tr>
<tr>
<td align="left">N330A00</td>
<td align="left">Osteoporosis in endocrine disorders</td>
</tr>
<tr>
<td align="left">N330B00</td>
<td align="left">Vertebral osteoporosis</td>
</tr>
<tr>
<td align="left">N330C00</td>
<td align="left">Osteoporosis localized to spine</td>
</tr>
<tr>
<td align="left">N330D00</td>
<td align="left">Osteoporosis due to corticosteroids</td>
</tr>
<tr>
<td align="left">N330.00</td>
<td align="left">Osteoporosis</td>
</tr>
<tr>
<td align="left">N330z00</td>
<td align="left">Osteoporosis NOS</td>
</tr>
<tr>
<td align="left">N331200</td>
<td align="left">Postoophorectomy osteoporosis with pathological fracture</td>
</tr>
<tr>
<td align="left">N331300</td>
<td align="left">Osteoporosis of disuse with pathological fracture</td>
</tr>
<tr>
<td align="left">N331400</td>
<td align="left">Postsurgical malabsorption osteoporosis with path fracture</td>
</tr>
<tr>
<td align="left">N331500</td>
<td align="left">Drug-induced osteoporosis with pathological fracture</td>
</tr>
<tr>
<td align="left">N331600</td>
<td align="left">Idiopathic osteoporosis with pathological fracture</td>
</tr>
<tr>
<td align="left">N331800</td>
<td align="left">Osteoporosis + pathological fracture lumbar vertebrae</td>
</tr>
<tr>
<td align="left">N331900</td>
<td align="left">Osteoporosis + pathological fracture thoracic vertebrae</td>
</tr>
<tr>
<td align="left">N331A00</td>
<td align="left">Osteoporosis + pathological fracture cervical vertebrae</td>
</tr>
<tr>
<td align="left">N331B00</td>
<td align="left">Postmenopausal osteoporosis with pathological fracture</td>
</tr>
<tr>
<td align="left">N331H00</td>
<td align="left">Collapse of cervical vertebra due to osteoporosis</td>
</tr>
<tr>
<td align="left">N331J00</td>
<td align="left">Collapse of lumbar vertebra due to osteoporosis</td>
</tr>
<tr>
<td align="left">N331K00</td>
<td align="left">Collapse of thoracic vertebra due to osteoporosis</td>
</tr>
<tr>
<td align="left">N331L00</td>
<td align="left">Collapse of vertebra due to osteoporosis NOS</td>
</tr>
<tr>
<td align="left">N331M00</td>
<td align="left">Fragility fracture due to unspecified osteoporosis</td>
</tr>
<tr>
<td align="left">N331M11</td>
<td align="left">Minimal trauma fracture due to unspecified osteoporosis</td>
</tr>
<tr>
<td align="left">N331N00</td>
<td align="left">Fragility fracture</td>
</tr>
<tr>
<td align="left">N331N11</td>
<td align="left">Minimal trauma fracture</td>
</tr>
<tr>
<td align="left">N374600</td>
<td align="left">Osteoporotic kyphosis</td>
</tr>
<tr>
<td align="left">NyuB000</td>
<td align="left">[X]Other osteoporosis with pathological fracture</td>
</tr>
<tr>
<td align="left">NyuB100</td>
<td align="left">[X]Other osteoporosis</td>
</tr>
<tr>
<td align="left">NyuB200</td>
<td align="left">[X]Osteoporosis in other disorders classified elsewhere</td>
</tr>
<tr>
<td align="left">NyuB800</td>
<td align="left">[X]Unspecified osteoporosis with pathological fracture</td>
</tr>
</tbody>
</table>
<h4>Secondary care diagnoses (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//secondary_care/ICD_osteoporosis.csv'>ICD_osteoporosis.csv</a>)</h4>
<table>
<thead>
<tr>
<th>ICD-10 code</th>
<th>ICD-10 Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left">M80</td>
<td align="left">Osteoporosis with pathological fracture</td>
</tr>
<tr>
<td align="left">M81</td>
<td align="left">Osteoporosis without pathological fracture</td>
</tr>
<tr>
<td align="left">M82</td>
<td align="left">Osteoporosis in diseases classified elsewhere</td>
</tr>
</tbody>
</table>
<h2>Other Cardiomyopathy</h2>
<h4>Implementation</h4>
~~~
At the specified date, a patient is defined as having had Other Cardiomyopathy IF they meet the criteria for any of the following on or before the specified date. The earliest date on which the individual meets any of the following criteria on or before the specified date is defined as the first event date:
Primary care
1. Other Cardiomyopathy diagnosis or history of diagnosis during a consultation
OR
Secondary care (ICD10)
1. ALL diagnoses of Other Cardiomyopathy or history of diagnosis during a hospitalization
~~~
<h4>Primary care (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//primary_care/CPRD_cardiomyo_oth.csv'>CPRD_cardiomyo_oth.csv</a>)</h4>
<table>
<thead>
<tr>
<th>Read code</th>
<th>Read Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left">C373300</td>
<td align="left">Familial cardiac amyloid</td>
</tr>
<tr>
<td align="left">C373G00</td>
<td align="left">Senile cardiac amyloidosis</td>
</tr>
<tr>
<td align="left">F391B00</td>
<td align="left">Cardiomyopathy in Duchenne muscular dystrophy</td>
</tr>
<tr>
<td align="left">G343.00</td>
<td align="left">Ischaemic cardiomyopathy</td>
</tr>
<tr>
<td align="left">G550.00</td>
<td align="left">Endomyocardial fibrosis</td>
</tr>
<tr>
<td align="left">G552.00</td>
<td align="left">Obscure African cardiomyopathy</td>
</tr>
<tr>
<td align="left">G554100</td>
<td align="left">Constrictive cardiomyopathy</td>
</tr>
<tr>
<td align="left">G554200</td>
<td align="left">Familial cardiomyopathy</td>
</tr>
<tr>
<td align="left">G554500</td>
<td align="left">Takotsubo cardiomyopathy</td>
</tr>
<tr>
<td align="left">G554511</td>
<td align="left">Stress cardiomyopathy</td>
</tr>
<tr>
<td align="left">G554.00</td>
<td align="left">Other primary cardiomyopathies</td>
</tr>
<tr>
<td align="left">G554z00</td>
<td align="left">Other primary cardiomyopathy NOS</td>
</tr>
<tr>
<td align="left">G557000</td>
<td align="left">Amyloid heart disease</td>
</tr>
<tr>
<td align="left">G557011</td>
<td align="left">Cardiac amyloidosis</td>
</tr>
<tr>
<td align="left">G557100</td>
<td align="left">Beriberi heart disease</td>
</tr>
<tr>
<td align="left">G557500</td>
<td align="left">Thyrotoxic heart disease</td>
</tr>
<tr>
<td align="left">G557.00</td>
<td align="left">Nutritional and metabolic cardiomyopathies</td>
</tr>
<tr>
<td align="left">G557z00</td>
<td align="left">Nutritional and metabolic cardiomyopathy NOS</td>
</tr>
<tr>
<td align="left">G558000</td>
<td align="left">Cardiomyopathy in Friedreich's ataxia</td>
</tr>
<tr>
<td align="left">G558100</td>
<td align="left">Cardiomyopathy in myotonic dystrophy</td>
</tr>
<tr>
<td align="left">G558200</td>
<td align="left">Dystrophic cardiomyopathy</td>
</tr>
<tr>
<td align="left">G558400</td>
<td align="left">Amyloid cardiomyopathy</td>
</tr>
<tr>
<td align="left">G558.00</td>
<td align="left">Cardiomyopathy in disease EC</td>
</tr>
<tr>
<td align="left">G558z00</td>
<td align="left">Cardiomyopathy in diseases EC, NOS</td>
</tr>
<tr>
<td align="left">G559.00</td>
<td align="left">Arrhythmogenic right ventricular cardiomyopathy</td>
</tr>
<tr>
<td align="left">G55A.00</td>
<td align="left">Tachycardiomyopathy</td>
</tr>
<tr>
<td align="left">G55A.11</td>
<td align="left">Tachycardia-induced cardiomyopathy</td>
</tr>
<tr>
<td align="left">G55..00</td>
<td align="left">Cardiomyopathy</td>
</tr>
<tr>
<td align="left">G55y000</td>
<td align="left">Cardiomyopathy due to drugs and other external agents</td>
</tr>
<tr>
<td align="left">G55y.00</td>
<td align="left">Secondary cardiomyopathy NOS</td>
</tr>
<tr>
<td align="left">G55z.00</td>
<td align="left">Cardiomyopathy NOS</td>
</tr>
<tr>
<td align="left">Gyu5N00</td>
<td align="left">[X]Other restrictive cardiomyopathy</td>
</tr>
<tr>
<td align="left">Gyu5P00</td>
<td align="left">[X]Other cardiomyopathies</td>
</tr>
<tr>
<td align="left">Gyu5R00</td>
<td align="left">[X]Cardiomyopathy in metabolic diseases CE</td>
</tr>
</tbody>
</table>
<h4>Secondary care diagnoses (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//secondary_care/ICD_cardiomyo_oth.csv'>ICD_cardiomyo_oth.csv</a>)</h4>
<table>
<thead>
<tr>
<th>ICD-10 code</th>
<th>ICD-10 Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left">I25.5</td>
<td align="left">Ischaemic cardiomyopathy</td>
</tr>
<tr>
<td align="left">I42.3</td>
<td align="left">Endomyocardial (eosinophilic) disease</td>
</tr>
<tr>
<td align="left">I42.5</td>
<td align="left">Other restrictive cardiomyopathy</td>
</tr>
<tr>
<td align="left">I42.7</td>
<td align="left">Cardiomyopathy due to drugs and other external agents</td>
</tr>
<tr>
<td align="left">I42.8</td>
<td align="left">Other cardiomyopathies</td>
</tr>
<tr>
<td align="left">I42.9</td>
<td align="left">Cardiomyopathy, unspecified</td>
</tr>
<tr>
<td align="left">I43</td>
<td align="left">Cardiomyopathy in diseases classified elsewhere</td>
</tr>
</tbody>
</table>
<h2>Other anaemias</h2>
<h4>Implementation</h4>
~~~
At the specified date, a patient is defined as having had Other anaemias IF they meet the criteria for any of the following on or before the specified date. The earliest date on which the individual meets any of the following criteria on or before the specified date is defined as the first event date:
Primary care
1. Other anaemias diagnosis or history of diagnosis during a consultation
OR
2. Possible diagnosis of Other anaemias during a consultation IF there is NO record satisfying the criteria for Iron deficiency Anaemia, B12 deficiency anaemia, folate deficiency anaemia, Thalassaemia, Thalassaemia trait, Sickle Cell Anaemia, other haemolytic anaemia or aplastic anaemia.
OR
Secondary care (ICD10)
1. ALL diagnoses of Other anaemias or history of diagnosis during a hospitalization
~~~
<h4>Primary care (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//primary_care/CPRD_oth_anaemia.csv'>CPRD_oth_anaemia.csv</a>)</h4>
<table>
<thead>
<tr>
<th>Read code</th>
<th>Read Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left">145..11</td>
<td align="left">H/O: anaemia</td>
</tr>
<tr>
<td align="left">1454.00</td>
<td align="left">H/O: anaemia NOS</td>
</tr>
<tr>
<td align="left">4234.00</td>
<td align="left">Haemoglobin very low</td>
</tr>
<tr>
<td align="left">4235.00</td>
<td align="left">Haemoglobin low</td>
</tr>
<tr>
<td align="left">D00..11</td>
<td align="left">Hypochromic - microcytic anaemia</td>
</tr>
<tr>
<td align="left">D00..12</td>
<td align="left">Microcytic - hypochromic anaemia</td>
</tr>
<tr>
<td align="left">D00y100</td>
<td align="left">Microcytic hypochromic anaemia</td>
</tr>
<tr>
<td align="left">D00z200</td>
<td align="left">Idiopathic hypochromic anaemia</td>
</tr>
<tr>
<td align="left">D012112</td>
<td align="left">Megaloblastic anaemia due to dietary causes</td>
</tr>
<tr>
<td align="left">D012500</td>
<td align="left">Macrocytic anaemia unspecified cause</td>
</tr>
<tr>
<td align="left">D013.00</td>
<td align="left">Other specified megaloblastic anaemia NEC</td>
</tr>
<tr>
<td align="left">D013z00</td>
<td align="left">Other specified megaloblastic anaemia NEC NOS</td>
</tr>
<tr>
<td align="left">D014000</td>
<td align="left">Amino-acid deficiency anaemia</td>
</tr>
<tr>
<td align="left">D014100</td>
<td align="left">Oroticaciduria</td>
</tr>
<tr>
<td align="left">D014.00</td>
<td align="left">Protein-deficiency anaemia</td>
</tr>
<tr>
<td align="left">D014z00</td>
<td align="left">Protein-deficiency anaemia NOS</td>
</tr>
<tr>
<td align="left">D01..00</td>
<td align="left">Other deficiency anaemias</td>
</tr>
<tr>
<td align="left">D01..11</td>
<td align="left">Megaloblastic anaemia</td>
</tr>
<tr>
<td align="left">D01y000</td>
<td align="left">Vitamin C deficiency anaemia</td>
</tr>
<tr>
<td align="left">D01y100</td>
<td align="left">Vitamin E deficiency anaemia</td>
</tr>
<tr>
<td align="left">D01y.00</td>
<td align="left">Other specified nutritional deficiency anaemia</td>
</tr>
<tr>
<td align="left">D01yy00</td>
<td align="left">Other specified other nutritional deficiency anaemia</td>
</tr>
<tr>
<td align="left">D01yz00</td>
<td align="left">Other specified nutritional deficiency anaemia NOS</td>
</tr>
<tr>
<td align="left">D01z000</td>
<td align="left">[X]Megaloblastic anaemia NOS</td>
</tr>
<tr>
<td align="left">D01z.00</td>
<td align="left">Other deficiency anaemias NOS</td>
</tr>
<tr>
<td align="left">D01z.11</td>
<td align="left">Megaloblastic anaemia NOS</td>
</tr>
<tr>
<td align="left">D0...00</td>
<td align="left">Deficiency anaemias</td>
</tr>
<tr>
<td align="left">D0y..00</td>
<td align="left">Other specified deficiency anaemias</td>
</tr>
<tr>
<td align="left">D0z..00</td>
<td align="left">Deficiency anaemias NOS</td>
</tr>
<tr>
<td align="left">D210000</td>
<td align="left">Congenital sideroblastic anaemia</td>
</tr>
<tr>
<td align="left">D210100</td>
<td align="left">Acquired sideroblastic anaemia</td>
</tr>
<tr>
<td align="left">D210200</td>
<td align="left">Pyridoxine-responsive sideroblastic anaemia</td>
</tr>
<tr>
<td align="left">D210300</td>
<td align="left">Secondary sideroblastic anaemia due to disease</td>
</tr>
<tr>
<td align="left">D210400</td>
<td align="left">Secondary sideroblastic anaemia due to drugs and toxins</td>
</tr>
<tr>
<td align="left">D210.00</td>
<td align="left">Sideroblastic anaemia</td>
</tr>
<tr>
<td align="left">D210z00</td>
<td align="left">Sideroblastic anaemia NOS</td>
</tr>
<tr>
<td align="left">D211.00</td>
<td align="left">Acute posthaemorrhagic anaemia</td>
</tr>
<tr>
<td align="left">D211.11</td>
<td align="left">Normocytic anaemia following acute bleed</td>
</tr>
<tr>
<td align="left">D212000</td>
<td align="left">Anaemia in ovarian carcinoma</td>
</tr>
<tr>
<td align="left">D212.00</td>
<td align="left">Anaemia in neoplastic disease</td>
</tr>
<tr>
<td align="left">D213.00</td>
<td align="left">Refractory Anaemia</td>
</tr>
<tr>
<td align="left">D214.00</td>
<td align="left">Chronic anaemia</td>
</tr>
<tr>
<td align="left">D215000</td>
<td align="left">Anaemia secondary to chronic renal failure</td>
</tr>
<tr>
<td align="left">D215.00</td>
<td align="left">Anaemia secondary to renal failure</td>
</tr>
<tr>
<td align="left">D21..00</td>
<td align="left">Other and unspecified anaemias</td>
</tr>
<tr>
<td align="left">D21y000</td>
<td align="left">Congenital dyshaematopoietic anaemia</td>
</tr>
<tr>
<td align="left">D21y011</td>
<td align="left">Congenital dyserythropoietic anaemia</td>
</tr>
<tr>
<td align="left">D21y012</td>
<td align="left">Congenital dyserythropoiesis NEC</td>
</tr>
<tr>
<td align="left">D21y200</td>
<td align="left">Leukoerythroblastic anaemia</td>
</tr>
<tr>
<td align="left">D21y300</td>
<td align="left">Hereditary erythroblast multinuclearity + positive acid test</td>
</tr>
<tr>
<td align="left">D21y.00</td>
<td align="left">Other specified anaemias</td>
</tr>
<tr>
<td align="left">D21yy00</td>
<td align="left">Other specified other anaemia</td>
</tr>
<tr>
<td align="left">D21yz00</td>
<td align="left">Other specified anaemia NOS</td>
</tr>
<tr>
<td align="left">D21z.00</td>
<td align="left">Anaemia unspecified</td>
</tr>
<tr>
<td align="left">D21z.11</td>
<td align="left">Secondary anaemia NOS</td>
</tr>
<tr>
<td align="left">D21z.12</td>
<td align="left">Normocytic anaemia due to unspecified cause</td>
</tr>
<tr>
<td align="left">D21z.13</td>
<td align="left">Macrocytic anaemia of unspecified cause</td>
</tr>
<tr>
<td align="left">D2...00</td>
<td align="left">Aplastic and other anaemias</td>
</tr>
<tr>
<td align="left">D2y..00</td>
<td align="left">Other specified anaemias</td>
</tr>
<tr>
<td align="left">D2z..00</td>
<td align="left">Other anaemias NOS</td>
</tr>
<tr>
<td align="left">Dyu0.00</td>
<td align="left">[X]Nutritional anaemias</td>
</tr>
<tr>
<td align="left">Dyu2200</td>
<td align="left">[X]Anaemia in other chronic diseases classified elsewhere</td>
</tr>
<tr>
<td align="left">Dyu2400</td>
<td align="left">[X]Other specified anaemias</td>
</tr>
<tr>
<td align="left">Q455000</td>
<td align="left">Congenital anaemia from fetal blood loss</td>
</tr>
<tr>
<td align="left">Q455.00</td>
<td align="left">Congenital anaemia</td>
</tr>
<tr>
<td align="left">Q456.00</td>
<td align="left">Anaemia of prematurity</td>
</tr>
<tr>
<td align="left">Qyu5C00</td>
<td align="left">[X]Other congenital anaemias, not elsewhere classified</td>
</tr>
</tbody>
</table>
<h4>Secondary care diagnoses (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//secondary_care/ICD_oth_anaemia.csv'>ICD_oth_anaemia.csv</a>)</h4>
<table>
<thead>
<tr>
<th>ICD-10 code</th>
<th>ICD-10 Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left">D53</td>
<td align="left">Other nutritional anaemias</td>
</tr>
<tr>
<td align="left">D62</td>
<td align="left">Acute posthaemorrhagic anaemia</td>
</tr>
<tr>
<td align="left">D63</td>
<td align="left">Anaemia in chronic diseases classified elsewhere</td>
</tr>
<tr>
<td align="left">D64</td>
<td align="left">Other anaemias</td>
</tr>
</tbody>
</table>
<h2>Other haemolytic anaemias</h2>
<h4>Implementation</h4>
~~~
At the specified date, a patient is defined as having had 'Other haemolytic anaemias' IF they meet the criteria for any of the following on or before the specified date. The earliest date on which the individual meets any of the following criteria on or before the specified date is defined as the first event date:
Primary care
1. 'Other haemolytic anaemias' diagnosis or history of diagnosis during a consultation
OR
2. Possible diagnosis of 'Other haemolytic anaemias' during a consultation IF there is NO record satisfying the criteria for Thalassaemia or Sickle Cell Anaemia.
OR
Secondary care (ICD10)
1. ALL diagnoses of 'Other haemolytic anaemias' or history of diagnosis during a hospitalization
~~~
<h4>Primary care (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//primary_care/CPRD_oth_haem_anaemia.csv'>CPRD_oth_haem_anaemia.csv</a>)</h4>
<table>
<thead>
<tr>
<th>Read code</th>
<th>Read Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="right">1453</td>
<td align="left">H/O: haemolytic anaemia</td>
</tr>
<tr>
<td align="left">D100.00</td>
<td align="left">Hereditary spherocytosis</td>
</tr>
<tr>
<td align="left">D100.11</td>
<td align="left">Acholuric familial jaundice</td>
</tr>
<tr>
<td align="left">D100.12</td>
<td align="left">Minkowski - Chauffard syndrome</td>
</tr>
<tr>
<td align="left">D101.00</td>
<td align="left">Hereditary elliptocytosis</td>
</tr>
<tr>
<td align="left">D101.11</td>
<td align="left">Ovalocytosis - hereditary</td>
</tr>
<tr>
<td align="left">D102000</td>
<td align="left">Glucose-6-phosphate dehydrogenase deficiency anaemia</td>
</tr>
<tr>
<td align="left">D102100</td>
<td align="left">Favism</td>
</tr>
<tr>
<td align="left">D102200</td>
<td align="left">Drug-induced enzyme deficiency anaemia</td>
</tr>
<tr>
<td align="left">D102.00</td>
<td align="left">Haemolytic anaemia due to glutathione metabolism disorder</td>
</tr>
<tr>
<td align="left">D103000</td>
<td align="left">Haemolytic anaemia due to hexokinase deficiency</td>
</tr>
<tr>
<td align="left">D103100</td>
<td align="left">Haemolytic anaemia due to pyruvate kinase deficiency</td>
</tr>
<tr>
<td align="left">D103300</td>
<td align="left">Anaemia due to disorders of nucleotide metabolism</td>
</tr>
<tr>
<td align="left">D103z00</td>
<td align="left">Enzyme deficiency haemolytic anaemia NOS</td>
</tr>
<tr>
<td align="left">D107000</td>
<td align="left">Congenital Heinz-body anaemia</td>
</tr>
<tr>
<td align="left">D107100</td>
<td align="left">Hereditary persistence of fetal haemoglobin [HPFH]</td>
</tr>
<tr>
<td align="left">D107111</td>
<td align="left">Hb F disease</td>
</tr>
<tr>
<td align="left">D107200</td>
<td align="left">Haemoglobin Bart's disease</td>
</tr>
<tr>
<td align="left">D107300</td>
<td align="left">Haemoglobin-C disease</td>
</tr>
<tr>
<td align="left">D107400</td>
<td align="left">Haemoglobin-D disease</td>
</tr>
<tr>
<td align="left">D107500</td>
<td align="left">Haemoglobin-E disease</td>
</tr>
<tr>
<td align="left">D107600</td>
<td align="left">Haemoglobin Zurich disease</td>
</tr>
<tr>
<td align="left">D107700</td>
<td align="left">Haemoglobin-H disease</td>
</tr>
<tr>
<td align="left">D107.00</td>
<td align="left">Other haemoglobinopathies</td>
</tr>
<tr>
<td align="left">D107y00</td>
<td align="left">Other specified other haemoglobinopathy</td>
</tr>
<tr>
<td align="left">D107z00</td>
<td align="left">Other haemoglobinopathy NOS</td>
</tr>
<tr>
<td align="left">D10..00</td>
<td align="left">Hereditary haemolytic anaemias</td>
</tr>
<tr>
<td align="left">D10y000</td>
<td align="left">Stomatocytosis</td>
</tr>
<tr>
<td align="left">D10y.00</td>
<td align="left">Other specified hereditary haemolytic anaemias</td>
</tr>
<tr>
<td align="left">D10yz00</td>
<td align="left">Other specified hereditary haemolytic anaemia NOS</td>
</tr>
<tr>
<td align="left">D10z.00</td>
<td align="left">Hereditary haemolytic anaemia NOS</td>
</tr>
<tr>
<td align="left">D110000</td>
<td align="left">Primary cold-type haemolytic anaemia</td>
</tr>
<tr>
<td align="left">D110100</td>
<td align="left">Primary warm-type haemolytic anaemia</td>
</tr>
<tr>
<td align="left">D110200</td>
<td align="left">Secondary cold-type haemolytic anaemia</td>
</tr>
<tr>
<td align="left">D110400</td>
<td align="left">Drug-induced autoimmune haemolytic anaemia</td>
</tr>
<tr>
<td align="left">D110.00</td>
<td align="left">Autoimmune haemolytic anaemias</td>
</tr>
<tr>
<td align="left">D110.11</td>
<td align="left">Coombs positive haemolysis</td>
</tr>
<tr>
<td align="left">D110z00</td>
<td align="left">Autoimmune haemolytic anaemia NOS</td>
</tr>
<tr>
<td align="left">D111000</td>
<td align="left">Mechanical haemolytic anaemia</td>
</tr>
<tr>
<td align="left">D111100</td>
<td align="left">Microangiopathic haemolytic anaemia</td>
</tr>
<tr>
<td align="left">D111300</td>
<td align="left">Haemolytic-uraemic syndrome</td>
</tr>
<tr>
<td align="left">D111400</td>
<td align="left">Drug-induced haemolytic anaemia</td>
</tr>
<tr>
<td align="left">D111500</td>
<td align="left">Infective haemolytic anaemia</td>
</tr>
<tr>
<td align="left">D111.00</td>
<td align="left">Non-autoimmune haemolytic anaemia</td>
</tr>
<tr>
<td align="left">D111y00</td>
<td align="left">Other specified non-autoimmune haemolytic anaemia</td>
</tr>
<tr>
<td align="left">D111z00</td>
<td align="left">Non-autoimmune haemolytic anaemia NOS</td>
</tr>
<tr>
<td align="left">D112000</td>
<td align="left">Haemoglobinuria from exertion</td>
</tr>
<tr>
<td align="left">D112011</td>
<td align="left">March haemoglobinuria</td>
</tr>
<tr>
<td align="left">D112012</td>
<td align="left">Marchiafava - Micheli syndrome</td>
</tr>
<tr>
<td align="left">D112100</td>
<td align="left">Paroxysmal nocturnal haemoglobinuria</td>
</tr>
<tr>
<td align="left">D112200</td>
<td align="left">Paroxysmal cold haemoglobinuria</td>
</tr>
<tr>
<td align="left">D112.00</td>
<td align="left">Haemoglobinuria due to haemolysis from external causes</td>
</tr>
<tr>
<td align="left">D112z00</td>
<td align="left">Haemoglobinuria due to haemolysis from external cause NOS</td>
</tr>
<tr>
<td align="left">D112z11</td>
<td align="left">Cold haemoglobinuria</td>
</tr>
<tr>
<td align="left">D112z12</td>
<td align="left">Acquired haemolytic anaemia with haemoglobinuria NEC</td>
</tr>
<tr>
<td align="left">D112z13</td>
<td align="left">Paroxysmal haemoglobinuria NOS</td>
</tr>
<tr>
<td align="left">D11..00</td>
<td align="left">Acquired haemolytic anaemias</td>
</tr>
<tr>
<td align="left">D11z000</td>
<td align="left">Acquired spherocytosis</td>
</tr>
<tr>
<td align="left">D11z100</td>
<td align="left">Pyknocytosis, infantile</td>
</tr>
<tr>
<td align="left">D11z.00</td>
<td align="left">Acquired haemolytic anaemia NOS</td>
</tr>
<tr>
<td align="left">D1...00</td>
<td align="left">Haemolytic anaemias</td>
</tr>
<tr>
<td align="left">D1y..00</td>
<td align="left">Other specified haemolytic anaemias</td>
</tr>
<tr>
<td align="left">D1z..00</td>
<td align="left">Haemolytic anaemias NOS</td>
</tr>
<tr>
<td align="left">Dyu1300</td>
<td align="left">[X]Other haemoglobinopathies</td>
</tr>
<tr>
<td align="left">Dyu1500</td>
<td align="left">[X]Other autoimmune haemolytic anaemias</td>
</tr>
<tr>
<td align="left">Dyu1.00</td>
<td align="left">[X]Haemolytic anaemias</td>
</tr>
<tr>
<td align="left">Q430000</td>
<td align="left">Neonatal jaundice + glucose-6-phosphate dehydrogenase defic.</td>
</tr>
<tr>
<td align="left">Q430.00</td>
<td align="left">Perinatal jaundice from hereditary haemolytic anaemias</td>
</tr>
<tr>
<td align="left">Q430z00</td>
<td align="left">Perinatal jaundice from hereditary haemolytic anaemia NOS</td>
</tr>
</tbody>
</table>
<h4>Secondary care diagnoses (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//secondary_care/ICD_oth_haem_anaemia.csv'>ICD_oth_haem_anaemia.csv</a>)</h4>
<table>
<thead>
<tr>
<th>ICD-10 code</th>
<th>ICD-10 Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left">D55</td>
<td align="left">Anaemia due to enzyme disorders</td>
</tr>
<tr>
<td align="left">D58</td>
<td align="left">Other hereditary haemolytic anaemias</td>
</tr>
<tr>
<td align="left">D59</td>
<td align="left">Acquired haemolytic anaemia</td>
</tr>
</tbody>
</table>
<h2>Other interstitial pulmonary diseases with fibrosis</h2>
<h4>Implementation</h4>
~~~
At the specified date, a patient is defined as having had Other interstitial pulmonary diseases with fibrosis IF they meet the criteria for any of the following on or before the specified date. The earliest date on which the individual meets any of the following criteria on or before the specified date is defined as the first event date:
Primary care
1. Other interstitial pulmonary diseases with fibrosis diagnosis or history of diagnosis during a consultation
OR
Secondary care (ICD10)
1. ALL diagnoses of Other interstitial pulmonary diseases with fibrosis or history of diagnosis during a hospitalization
~~~
<h4>Primary care (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//primary_care/CPRD_pulm_fibrosis.csv'>CPRD_pulm_fibrosis.csv</a>)</h4>
<table>
<thead>
<tr>
<th>Read code</th>
<th>Read Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left">23E5.00</td>
<td align="left">O/E - fibrosis of lung present</td>
</tr>
<tr>
<td align="left">23E5.11</td>
<td align="left">O/E - fibrosis of lung</td>
</tr>
<tr>
<td align="left">H55..00</td>
<td align="left">Postinflammatory pulmonary fibrosis</td>
</tr>
<tr>
<td align="left">H55..11</td>
<td align="left">Cirrhosis of lung</td>
</tr>
<tr>
<td align="left">H563100</td>
<td align="left">Diffuse pulmonary fibrosis</td>
</tr>
<tr>
<td align="left">H563200</td>
<td align="left">Pulmonary fibrosis</td>
</tr>
<tr>
<td align="left">H563300</td>
<td align="left">Usual interstitial pneumonitis</td>
</tr>
<tr>
<td align="left">H563.00</td>
<td align="left">Idiopathic fibrosing alveolitis</td>
</tr>
<tr>
<td align="left">H563.11</td>
<td align="left">Hamman - Rich syndrome</td>
</tr>
<tr>
<td align="left">H563.12</td>
<td align="left">Cryptogenic fibrosing alveolitis</td>
</tr>
<tr>
<td align="left">H563.13</td>
<td align="left">Idiopathic pulmonary fibrosis</td>
</tr>
<tr>
<td align="left">H563z00</td>
<td align="left">Idiopathic fibrosing alveolitis NOS</td>
</tr>
<tr>
<td align="left">Hyu5000</td>
<td align="left">[X]Other interstitial pulmonary diseases with fibrosis</td>
</tr>
</tbody>
</table>
<h4>Secondary care diagnoses (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//secondary_care/ICD_pulm_fibrosis.csv'>ICD_pulm_fibrosis.csv</a>)</h4>
<table>
<thead>
<tr>
<th>ICD-10 code</th>
<th>ICD-10 Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left">J84.1</td>
<td align="left">Other interstitial pulmonary diseases with fibrosis</td>
</tr>
</tbody>
</table>
<h2>Other nervous system infections</h2>
<h4>Implementation</h4>
~~~
At the specified date, a patient is defined as having had Other nervous system infections IF they meet the criteria for any of the following on or before the specified date. The earliest date on which the individual meets any of the following criteria on or before the specified date is defined as the first event date:
Secondary care
1. ALL diagnoses of Other nervous system infections or history of diagnosis during a hospitalization
OR
2. ALL possible diagnosis of Other nervous system infections during a hospitalization IF NO record satisfying criteria for Meningitis or Encephalitis 30 days before or 30 days after the first event date for Other nervous system infections.
~~~
<h4>Secondary care diagnoses (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//secondary_care/ICD_oth_nerv_sys.csv'>ICD_oth_nerv_sys.csv</a>)</h4>
<table>
<thead>
<tr>
<th>ICD-10 code</th>
<th>ICD-10 Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left">A06.6</td>
<td align="left">Amoebic brain abscess</td>
</tr>
<tr>
<td align="left">A17.8</td>
<td align="left">Other tuberculosis of nervous system</td>
</tr>
<tr>
<td align="left">A17.9</td>
<td align="left">Tuberculosis of nervous system, unspecified</td>
</tr>
<tr>
<td align="left">A52.1</td>
<td align="left">Symptomatic neurosyphilis</td>
</tr>
<tr>
<td align="left">A52.2</td>
<td align="left">Asymptomatic neurosyphilis</td>
</tr>
<tr>
<td align="left">A52.3</td>
<td align="left">Neurosyphilis, unspecified</td>
</tr>
<tr>
<td align="left">A80</td>
<td align="left">Acute poliomyelitis</td>
</tr>
<tr>
<td align="left">A81</td>
<td align="left">Atypical virus infections of central nervous system</td>
</tr>
<tr>
<td align="left">A82</td>
<td align="left">Rabies</td>
</tr>
<tr>
<td align="left">A88</td>
<td align="left">Other viral infections of central nervous system, not elsewhere classified</td>
</tr>
<tr>
<td align="left">A89</td>
<td align="left">Unspecified viral infection of central nervous system</td>
</tr>
<tr>
<td align="left">B02.2</td>
<td align="left">Zoster with other nervous system involvement</td>
</tr>
<tr>
<td align="left">B06.0</td>
<td align="left">Rubella with neurological complications</td>
</tr>
<tr>
<td align="left">B43.1</td>
<td align="left">Phaeomycotic brain abscess</td>
</tr>
<tr>
<td align="left">B45.1</td>
<td align="left">Cerebral cryptococcosis</td>
</tr>
<tr>
<td align="left">B50.0</td>
<td align="left">Plasmodium falciparum malaria with cerebral complications</td>
</tr>
<tr>
<td align="left">B58.2</td>
<td align="left">Toxoplasma meningoencephalitis</td>
</tr>
<tr>
<td align="left">B69.0</td>
<td align="left">Cysticercosis of central nervous system</td>
</tr>
<tr>
<td align="left">B90.0</td>
<td align="left">Sequelae of central nervous system tuberculosis</td>
</tr>
<tr>
<td align="left">B91</td>
<td align="left">Sequelae of poliomyelitis</td>
</tr>
<tr>
<td align="left">G04.2</td>
<td align="left">Bacterial meningoencephalitis and meningomyelitis, not elsewhere classified</td>
</tr>
<tr>
<td align="left">G04.8</td>
<td align="left">Other encephalitis, myelitis and encephalomyelitis</td>
</tr>
<tr>
<td align="left">G04.9</td>
<td align="left">Encephalitis, myelitis and encephalomyelitis, unspecified</td>
</tr>
<tr>
<td align="left">G05.0</td>
<td align="left">Encephalitis, myelitis and encephalomyelitis in bacterial diseases classified elsewhere</td>
</tr>
<tr>
<td align="left">G05.1</td>
<td align="left">Encephalitis, myelitis and encephalomyelitis in viral diseases classified elsewhere</td>
</tr>
<tr>
<td align="left">G05.2</td>
<td align="left">Encephalitis, myelitis and encephalomyelitis in other infectious and parasitic diseases classified elsewhere</td>
</tr>
<tr>
<td align="left">G06</td>
<td align="left">Intracranial and intraspinal abscess and granuloma</td>
</tr>
<tr>
<td align="left">G07</td>
<td align="left">Intracranial and intraspinal abscess and granuloma in diseases classified elsewhere</td>
</tr>
<tr>
<td align="left">G08</td>
<td align="left">Intracranial and intraspinal phlebitis and thrombophlebitis</td>
</tr>
<tr>
<td align="left">M89.6</td>
<td align="left">Osteopathy after poliomyelitis</td>
</tr>
</tbody>
</table>
<h2>Other or unspecified infectious organisms</h2>
<h4>Implementation</h4>
~~~
At the specified date, a patient is defined as having had Diseases caused by Other or unspecified infectious organisms IF they meet the criteria for any of the following on or before the specified date. The earliest date on which the individual meets any of the following criteria on or before the specified date is defined as the first event date:
Secondary care
1. ALL diagnoses of Diseases caused by Other or unspecified infectious organisms or history of diagnosis during a hospitalization
OR
2. ALL possible diagnosis of Diseases caused by Other or unspecified infectious organisms during a hospitalization IF NO record satisfying criteria for Bacterial Diseases, Tuberculosis, Viral diseases, Chronic viral Hepatitis, HIV, Mycoses or Parasitic Infections 30 days before or 30 days after the first event date for Diseases caused by Other or unspecified infectious organisms.
~~~
<h4>Secondary care diagnoses (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//secondary_care/ICD_oth_organisms.csv'>ICD_oth_organisms.csv</a>)</h4>
<table>
<thead>
<tr>
<th>ICD-10 code</th>
<th>ICD-10 Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left">A08.5</td>
<td align="left">Other specified intestinal infections</td>
</tr>
<tr>
<td align="left">A09</td>
<td align="left">Other gastroenteritis and colitis of infectious and unspecified origin</td>
</tr>
<tr>
<td align="left">A41.8</td>
<td align="left">Other specified sepsis</td>
</tr>
<tr>
<td align="left">A41.9</td>
<td align="left">Sepsis, unspecified</td>
</tr>
<tr>
<td align="left">A63.8</td>
<td align="left">Other specified predominantly sexually transmitted diseases</td>
</tr>
<tr>
<td align="left">A64</td>
<td align="left">Unspecified sexually transmitted disease</td>
</tr>
<tr>
<td align="left">A81.0</td>
<td align="left">Creutzfeldt-Jakob disease</td>
</tr>
<tr>
<td align="left">A81.8</td>
<td align="left">Other atypical virus infections of central nervous system</td>
</tr>
<tr>
<td align="left">A81.9</td>
<td align="left">Atypical virus infection of central nervous system, unspecified</td>
</tr>
<tr>
<td align="left">B94.8</td>
<td align="left">Sequelae of other specified infectious and parasitic diseases</td>
</tr>
<tr>
<td align="left">B94.9</td>
<td align="left">Sequelae of unspecified infectious or parasitic disease</td>
</tr>
<tr>
<td align="left">B99</td>
<td align="left">Other and unspecified infectious diseases</td>
</tr>
<tr>
<td align="left">G02.8</td>
<td align="left">Meningitis in other specified infectious and parasitic diseases classified elsewhere</td>
</tr>
<tr>
<td align="left">G04.8</td>
<td align="left">Other encephalitis, myelitis and encephalomyelitis</td>
</tr>
<tr>
<td align="left">G04.9</td>
<td align="left">Encephalitis, myelitis and encephalomyelitis, unspecified</td>
</tr>
<tr>
<td align="left">G05.2</td>
<td align="left">Encephalitis, myelitis and encephalomyelitis in other infectious and parasitic diseases classified elsewhere</td>
</tr>
<tr>
<td align="left">G06</td>
<td align="left">Intracranial and intraspinal abscess and granuloma</td>
</tr>
<tr>
<td align="left">G07</td>
<td align="left">Intracranial and intraspinal abscess and granuloma in diseases classified elsewhere</td>
</tr>
<tr>
<td align="left">G08</td>
<td align="left">Intracranial and intraspinal phlebitis and thrombophlebitis</td>
</tr>
<tr>
<td align="left">G53.1</td>
<td align="left">Multiple cranial nerve palsies in infectious and parasitic diseases classified elsewhere</td>
</tr>
<tr>
<td align="left">G63.0</td>
<td align="left">Polyneuropathy in infectious and parasitic diseases classified elsewhere</td>
</tr>
<tr>
<td align="left">G94.0</td>
<td align="left">Hydrocephalus in infectious and parasitic diseases classified elsewhere</td>
</tr>
<tr>
<td align="left">H10</td>
<td align="left">Conjunctivitis</td>
</tr>
<tr>
<td align="left">H13.1</td>
<td align="left">Conjunctivitis in infectious and parasitic diseases classified elsewhere</td>
</tr>
<tr>
<td align="left">H19.2</td>
<td align="left">Keratitis and keratoconjunctivitis in other infectious and parasitic diseases classified elsewhere</td>
</tr>
<tr>
<td align="left">H60</td>
<td align="left">Otitis externa</td>
</tr>
<tr>
<td align="left">H62.3</td>
<td align="left">Otitis externa in other infectious and parasitic diseases classified elsewhere</td>
</tr>
<tr>
<td align="left">H62.4</td>
<td align="left">Otitis externa in other diseases classified elsewhere</td>
</tr>
<tr>
<td align="left">H65</td>
<td align="left">Nonsuppurative otitis media</td>
</tr>
<tr>
<td align="left">H66</td>
<td align="left">Suppurative and unspecified otitis media</td>
</tr>
<tr>
<td align="left">H67.8</td>
<td align="left">Otitis media in other diseases classified elsewhere</td>
</tr>
<tr>
<td align="left">H70</td>
<td align="left">Mastoiditis and related conditions</td>
</tr>
<tr>
<td align="left">H73.0</td>
<td align="left">Acute myringitis</td>
</tr>
<tr>
<td align="left">H73.1</td>
<td align="left">Chronic myringitis</td>
</tr>
<tr>
<td align="left">H75.0</td>
<td align="left">Mastoiditis in infectious and parasitic diseases classified elsewhere</td>
</tr>
<tr>
<td align="left">I30.1</td>
<td align="left">Infective pericarditis</td>
</tr>
<tr>
<td align="left">I32.1</td>
<td align="left">Pericarditis in other infectious and parasitic diseases classified elsewhere</td>
</tr>
<tr>
<td align="left">I33.0</td>
<td align="left">Acute and subacute infective endocarditis</td>
</tr>
<tr>
<td align="left">I40.0</td>
<td align="left">Infective myocarditis</td>
</tr>
<tr>
<td align="left">I41.2</td>
<td align="left">Myocarditis in other infectious and parasitic diseases classified elsewhere</td>
</tr>
<tr>
<td align="left">I43.0</td>
<td align="left">Cardiomyopathy in infectious and parasitic diseases classified elsewhere</td>
</tr>
<tr>
<td align="left">I98.1</td>
<td align="left">Cardiovascular disorders in other infectious and parasitic diseases classified elsewhere</td>
</tr>
<tr>
<td align="left">J00</td>
<td align="left">Acute nasopharyngitis [common cold]</td>
</tr>
<tr>
<td align="left">J01</td>
<td align="left">Acute sinusitis</td>
</tr>
<tr>
<td align="left">J02.8</td>
<td align="left">Acute pharyngitis due to other specified organisms</td>
</tr>
<tr>
<td align="left">J02.9</td>
<td align="left">Acute pharyngitis, unspecified</td>
</tr>
<tr>
<td align="left">J03.8</td>
<td align="left">Acute tonsillitis due to other specified organisms</td>
</tr>
<tr>
<td align="left">J03.9</td>
<td align="left">Acute tonsillitis, unspecified</td>
</tr>
<tr>
<td align="left">J04</td>
<td align="left">Acute laryngitis and tracheitis</td>
</tr>
<tr>
<td align="left">J05</td>
<td align="left">Acute obstructive laryngitis [croup] and epiglottitis</td>
</tr>
<tr>
<td align="left">J06</td>
<td align="left">Acute upper respiratory infections of multiple and unspecified sites</td>
</tr>
<tr>
<td align="left">J16.8</td>
<td align="left">Pneumonia due to other specified infectious organisms</td>
</tr>
<tr>
<td align="left">J17.8</td>
<td align="left">Pneumonia in other diseases classified elsewhere</td>
</tr>
<tr>
<td align="left">J18</td>
<td align="left">Pneumonia, organism unspecified</td>
</tr>
<tr>
<td align="left">J20.8</td>
<td align="left">Acute bronchitis due to other specified organisms</td>
</tr>
<tr>
<td align="left">J20.9</td>
<td align="left">Acute bronchitis, unspecified</td>
</tr>
<tr>
<td align="left">J22</td>
<td align="left">Unspecified acute lower respiratory infection</td>
</tr>
<tr>
<td align="left">J44.0</td>
<td align="left">Chronic obstructive pulmonary disease with acute lower respiratory infection</td>
</tr>
<tr>
<td align="left">J44.1</td>
<td align="left">Chronic obstructive pulmonary disease with acute exacerbation, unspecified</td>
</tr>
<tr>
<td align="left">J85</td>
<td align="left">Abscess of lung and mediastinum</td>
</tr>
<tr>
<td align="left">K75.0</td>
<td align="left">Abscess of liver</td>
</tr>
<tr>
<td align="left">K77.0</td>
<td align="left">Liver disorders in infectious and parasitic diseases classified elsewhere</td>
</tr>
<tr>
<td align="left">L08.0</td>
<td align="left">Pyoderma</td>
</tr>
<tr>
<td align="left">L08.8</td>
<td align="left">Other specified local infections of skin and subcutaneous tissue</td>
</tr>
<tr>
<td align="left">L08.9</td>
<td align="left">Local infection of skin and subcutaneous tissue, unspecified</td>
</tr>
<tr>
<td align="left">L30.3</td>
<td align="left">Infective dermatitis</td>
</tr>
<tr>
<td align="left">M01.8</td>
<td align="left">Arthritis in other infectious and parasitic diseases classified elsewhere</td>
</tr>
<tr>
<td align="left">M02</td>
<td align="left">Reactive arthropathies</td>
</tr>
<tr>
<td align="left">M03</td>
<td align="left">Postinfective and reactive arthropathies in diseases classified elsewhere</td>
</tr>
<tr>
<td align="left">M46.3</td>
<td align="left">Infection of intervertebral disc (pyogenic)</td>
</tr>
<tr>
<td align="left">M46.4</td>
<td align="left">Discitis, unspecified</td>
</tr>
<tr>
<td align="left">M46.5</td>
<td align="left">Other infective spondylopathies</td>
</tr>
<tr>
<td align="left">M49.3</td>
<td align="left">Spondylopathy in other infectious and parasitic diseases classified elsewhere</td>
</tr>
<tr>
<td align="left">M60.0</td>
<td align="left">Infective myositis</td>
</tr>
<tr>
<td align="left">M63.2</td>
<td align="left">Myositis in other infectious diseases classified elsewhere</td>
</tr>
<tr>
<td align="left">N08.0</td>
<td align="left">Glomerular disorders in infectious and parasitic diseases classified elsewhere</td>
</tr>
<tr>
<td align="left">N10</td>
<td align="left">Acute tubulo-interstitial nephritis</td>
</tr>
<tr>
<td align="left">N16.0</td>
<td align="left">Renal tubulo-interstitial disorders in infectious and parasitic diseases classified elsewhere</td>
</tr>
<tr>
<td align="left">N29.1</td>
<td align="left">Other disorders of kidney and ureter in infectious and parasitic diseases classified elsewhere</td>
</tr>
<tr>
<td align="left">N30.0</td>
<td align="left">Acute cystitis</td>
</tr>
<tr>
<td align="left">N30.8</td>
<td align="left">Other cystitis</td>
</tr>
<tr>
<td align="left">N30.9</td>
<td align="left">Cystitis, unspecified</td>
</tr>
<tr>
<td align="left">N34</td>
<td align="left">Urethritis and urethral syndrome</td>
</tr>
<tr>
<td align="left">N48.1</td>
<td align="left">Balanoposthitis</td>
</tr>
<tr>
<td align="left">N77.0</td>
<td align="left">Ulceration of vulva in infectious and parasitic diseases classified elsewhere</td>
</tr>
<tr>
<td align="left">N77.1</td>
<td align="left">Vaginitis, vulvitis and vulvovaginitis in infectious and parasitic diseases classified elsewhere</td>
</tr>
<tr>
<td align="left">P23.8</td>
<td align="left">Congenital pneumonia due to other organisms</td>
</tr>
<tr>
<td align="left">P23.9</td>
<td align="left">Congenital pneumonia, unspecified</td>
</tr>
<tr>
<td align="left">P37.8</td>
<td align="left">Other specified congenital infectious and parasitic diseases</td>
</tr>
<tr>
<td align="left">P37.9</td>
<td align="left">Congenital infectious and parasitic disease, unspecified</td>
</tr>
<tr>
<td align="left">P39</td>
<td align="left">Other infections specific to the perinatal period</td>
</tr>
</tbody>
</table>
<h2>Other psychoactive substance misuse</h2>
<h4>Implementation</h4>
~~~
At the specified date, a patient is defined as having had Other psychoactive 'Other psychoactive substance misuse' IF they meet the criteria for any of the following on or before the specified date. The earliest date on which the individual meets any of the following criteria on or before the specified date is defined as the first event date:
Primary care
1. Other psychoactive 'Other psychoactive substance misuse' diagnosis or history of diagnosis during a consultation
OR
Secondary care
1. ALL diagnoses of Other psychoactive 'Other psychoactive substance misuse' or history of diagnosis during a hospitalization
~~~
<h4>Primary care (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//primary_care/CPRD_substance_misuse.csv'>CPRD_substance_misuse.csv</a>)</h4>
<table>
<thead>
<tr>
<th>Read code</th>
<th>Read Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left">13c5.00</td>
<td align="left">Substance misuse increased</td>
</tr>
<tr>
<td align="left">13c6.00</td>
<td align="left">Substance misuse decreased</td>
</tr>
<tr>
<td align="left">13c7.00</td>
<td align="left">Current drug user</td>
</tr>
<tr>
<td align="left">13c8.00</td>
<td align="left">Reduced drugs misuse</td>
</tr>
<tr>
<td align="left">13c9.00</td>
<td align="left">Subcutaneous drug user</td>
</tr>
<tr>
<td align="left">13cA.00</td>
<td align="left">Smokes drugs</td>
</tr>
<tr>
<td align="left">13cB.00</td>
<td align="left">Misuses drugs orally</td>
</tr>
<tr>
<td align="left">13cC.00</td>
<td align="left">Continuous use of drugs</td>
</tr>
<tr>
<td align="left">13cD.00</td>
<td align="left">Episodic use of drugs</td>
</tr>
<tr>
<td align="left">13cE.00</td>
<td align="left">Prolonged high dose use of cannabis</td>
</tr>
<tr>
<td align="left">13cF.00</td>
<td align="left">Preoccupied with substance misuse</td>
</tr>
<tr>
<td align="left">13cH.00</td>
<td align="left">Persistent substance misuse</td>
</tr>
<tr>
<td align="left">13cJ.00</td>
<td align="left">Previously injecting drug user</td>
</tr>
<tr>
<td align="left">13cK.00</td>
<td align="left">Current non recreational drug user</td>
</tr>
<tr>
<td align="left">13cM.00</td>
<td align="left">Substance misuse</td>
</tr>
<tr>
<td align="left">13r3.00</td>
<td align="left">Abstinent from drug misuse on maintenance replacement</td>
</tr>
<tr>
<td align="left">13r4.00</td>
<td align="left">Abstinent from drug misuse when receiving blocking therapy</td>
</tr>
<tr>
<td align="left">146F.00</td>
<td align="left">H/O: drug abuse</td>
</tr>
<tr>
<td align="left">1T00.00</td>
<td align="left">H/O daily heroin misuse</td>
</tr>
<tr>
<td align="left">1T01.00</td>
<td align="left">H/O weekly heroin misuse</td>
</tr>
<tr>
<td align="left">1T0..00</td>
<td align="left">H/O heroin misuse</td>
</tr>
<tr>
<td align="left">1T02.00</td>
<td align="left">Previous history of heroin misuse</td>
</tr>
<tr>
<td align="left">1T03.00</td>
<td align="left">H/O infrequent heroin misuse</td>
</tr>
<tr>
<td align="left">1T10.00</td>
<td align="left">H/O daily methadone misuse</td>
</tr>
<tr>
<td align="left">1T11.00</td>
<td align="left">H/O weekly methadone misuse</td>
</tr>
<tr>
<td align="left">1T1..00</td>
<td align="left">H/O methadone misuse</td>
</tr>
<tr>
<td align="left">1T12.00</td>
<td align="left">H/O infrequent methadone misuse</td>
</tr>
<tr>
<td align="left">1T13.00</td>
<td align="left">Previous history of methadone misuse</td>
</tr>
<tr>
<td align="left">1T...00</td>
<td align="left">History of substance misuse</td>
</tr>
<tr>
<td align="left">1T20.00</td>
<td align="left">H/O daily ecstasy misuse</td>
</tr>
<tr>
<td align="left">1T21.00</td>
<td align="left">H/O weekly ecstasy misuse</td>
</tr>
<tr>
<td align="left">1T2..00</td>
<td align="left">H/O ecstasy misuse</td>
</tr>
<tr>
<td align="left">1T22.00</td>
<td align="left">H/O infrequent ecstasy misuse</td>
</tr>
<tr>
<td align="left">1T23.00</td>
<td align="left">Previous history of ecstasy misuse</td>
</tr>
<tr>
<td align="left">1T30.00</td>
<td align="left">H/O daily benzodiazepine misuse</td>
</tr>
<tr>
<td align="left">1T31.00</td>
<td align="left">H/O weekly benzodiazepine misuse</td>
</tr>
<tr>
<td align="left">1T3..00</td>
<td align="left">H/O benzodiazepine misuse</td>
</tr>
<tr>
<td align="left">1T32.00</td>
<td align="left">H/O infrequent benzodiazepine misuse</td>
</tr>
<tr>
<td align="left">1T33.00</td>
<td align="left">Previous history of benzodiazepine misuse</td>
</tr>
<tr>
<td align="left">1T40.00</td>
<td align="left">H/O daily amphetamine misuse</td>
</tr>
<tr>
<td align="left">1T41.00</td>
<td align="left">H/O weekly amphetamine misuse</td>
</tr>
<tr>
<td align="left">1T4..00</td>
<td align="left">H/O amphetamine misuse</td>
</tr>
<tr>
<td align="left">1T42.00</td>
<td align="left">H/O infrequent amphetamine misuse</td>
</tr>
<tr>
<td align="left">1T43.00</td>
<td align="left">Previous history of amphetamine misuse</td>
</tr>
<tr>
<td align="left">1T50.00</td>
<td align="left">H/O daily cocaine misuse</td>
</tr>
<tr>
<td align="left">1T51.00</td>
<td align="left">H/O weekly cocaine misuse</td>
</tr>
<tr>
<td align="left">1T5..00</td>
<td align="left">H/O cocaine misuse</td>
</tr>
<tr>
<td align="left">1T52.00</td>
<td align="left">H/O infrequent cocaine misuse</td>
</tr>
<tr>
<td align="left">1T53.00</td>
<td align="left">Previous history of cocaine misuse</td>
</tr>
<tr>
<td align="left">1T60.00</td>
<td align="left">H/O daily crack cocaine misuse</td>
</tr>
<tr>
<td align="left">1T61.00</td>
<td align="left">H/O weekly crack cocaine misuse</td>
</tr>
<tr>
<td align="left">1T6..00</td>
<td align="left">H/O crack cocaine misuse</td>
</tr>
<tr>
<td align="left">1T62.00</td>
<td align="left">H/O infrequent crack cocaine misuse</td>
</tr>
<tr>
<td align="left">1T63.00</td>
<td align="left">Previous history of crack cocaine misuse</td>
</tr>
<tr>
<td align="left">1T7..00</td>
<td align="left">H/O hallucinogen misuse</td>
</tr>
<tr>
<td align="left">1T73.00</td>
<td align="left">Previous history of hallucinogen misuse</td>
</tr>
<tr>
<td align="left">1T80.00</td>
<td align="left">H/O daily cannabis misuse</td>
</tr>
<tr>
<td align="left">1T81.00</td>
<td align="left">H/O weekly cannabis misuse</td>
</tr>
<tr>
<td align="left">1T8..00</td>
<td align="left">H/O cannabis misuse</td>
</tr>
<tr>
<td align="left">1T82.00</td>
<td align="left">H/O infrequent cannabis misuse</td>
</tr>
<tr>
<td align="left">1T83.00</td>
<td align="left">Previous history of cannabis misuse</td>
</tr>
<tr>
<td align="left">1T90.00</td>
<td align="left">H/O daily solvent misuse</td>
</tr>
<tr>
<td align="left">1T91.00</td>
<td align="left">H/O weekly solvent misuse</td>
</tr>
<tr>
<td align="left">1T9..00</td>
<td align="left">H/O solvent misuse</td>
</tr>
<tr>
<td align="left">1T92.00</td>
<td align="left">H/O infrequent solvent misuse</td>
</tr>
<tr>
<td align="left">1T93.00</td>
<td align="left">Previous history of solvent misuse</td>
</tr>
<tr>
<td align="left">1TA..00</td>
<td align="left">H/O barbiturate misuse</td>
</tr>
<tr>
<td align="left">1TA3.00</td>
<td align="left">Previous history of barbiturate misuse</td>
</tr>
<tr>
<td align="left">1TB0.00</td>
<td align="left">H/O daily major tranquilliser misuse</td>
</tr>
<tr>
<td align="left">1TB..00</td>
<td align="left">H/O major tranquilliser misuse</td>
</tr>
<tr>
<td align="left">1TC0.00</td>
<td align="left">H/O daily anti-depressant misuse</td>
</tr>
<tr>
<td align="left">1TC..00</td>
<td align="left">H/O anti-depressant misuse</td>
</tr>
<tr>
<td align="left">1TC3.00</td>
<td align="left">Previous history of anti-depressant misuse</td>
</tr>
<tr>
<td align="left">1TD0.00</td>
<td align="left">H/O daily opiate misuse</td>
</tr>
<tr>
<td align="left">1TD1.00</td>
<td align="left">H/O weekly opiate misuse</td>
</tr>
<tr>
<td align="left">1TD..00</td>
<td align="left">H/O opiate misuse</td>
</tr>
<tr>
<td align="left">1TD2.00</td>
<td align="left">H/O infrequent opiate misuse</td>
</tr>
<tr>
<td align="left">1TD3.00</td>
<td align="left">Previous history of opiate misuse</td>
</tr>
<tr>
<td align="left">1TE..00</td>
<td align="left">Uses heroin on top of substitution therapy</td>
</tr>
<tr>
<td align="left">1TF..00</td>
<td align="left">Does not use heroin on top of substitution therapy</td>
</tr>
<tr>
<td align="left">1V00.00</td>
<td align="left">Occasional drug user</td>
</tr>
<tr>
<td align="left">1V01.00</td>
<td align="left">Long-term drug misuser</td>
</tr>
<tr>
<td align="left">1V0..00</td>
<td align="left">Misuses drugs</td>
</tr>
<tr>
<td align="left">1V02.00</td>
<td align="left">Poly-drug misuser</td>
</tr>
<tr>
<td align="left">1V04.00</td>
<td align="left">Misuses drugs rectally</td>
</tr>
<tr>
<td align="left">1V07.00</td>
<td align="left">Notified addict</td>
</tr>
<tr>
<td align="left">1V08.00</td>
<td align="left">Smokes drugs in cigarette form</td>
</tr>
<tr>
<td align="left">1V09.00</td>
<td align="left">Smokes drugs through a pipe</td>
</tr>
<tr>
<td align="left">1V0A.00</td>
<td align="left">Chases the dragon</td>
</tr>
<tr>
<td align="left">1V0B.00</td>
<td align="left">Sniffs drugs</td>
</tr>
<tr>
<td align="left">1V0C.00</td>
<td align="left">Drug addict</td>
</tr>
<tr>
<td align="left">1V0E.00</td>
<td align="left">Health problem secondary to drug misuse</td>
</tr>
<tr>
<td align="left">1V...00</td>
<td align="left">Drug misuse behaviour</td>
</tr>
<tr>
<td align="left">1V22.00</td>
<td align="left">Age at starting drug misuse</td>
</tr>
<tr>
<td align="left">1V23.00</td>
<td align="left">Time since stopped drug misuse</td>
</tr>
<tr>
<td align="left">1V26.00</td>
<td align="left">Misused drugs in past</td>
</tr>
<tr>
<td align="left">1V30.00</td>
<td align="left">Injects drugs subcutaneously</td>
</tr>
<tr>
<td align="left">1V31.00</td>
<td align="left">Injects drugs intramuscularly</td>
</tr>
<tr>
<td align="left">1V3..00</td>
<td align="left">Drug injection behaviour</td>
</tr>
<tr>
<td align="left">1V32.00</td>
<td align="left">Neck injector</td>
</tr>
<tr>
<td align="left">1V35.00</td>
<td align="left">Shares drug equipment</td>
</tr>
<tr>
<td align="left">1V37.00</td>
<td align="left">Drug injecting equipment hygiene</td>
</tr>
<tr>
<td align="left">1V38.00</td>
<td align="left">Sharing of drug injecting equipment</td>
</tr>
<tr>
<td align="left">1V4..00</td>
<td align="left">Priority of drug-related activities</td>
</tr>
<tr>
<td align="left">1V5..00</td>
<td align="left">Routine of drug-related activities</td>
</tr>
<tr>
<td align="left">1V64.00</td>
<td align="left">Illicit drug use</td>
</tr>
<tr>
<td align="left">1V65.00</td>
<td align="left">Heroin misuse</td>
</tr>
<tr>
<td align="left">1V66.00</td>
<td align="left">Ecstasy misuse</td>
</tr>
<tr>
<td align="left">46QB100</td>
<td align="left">Urine methadone positive</td>
</tr>
<tr>
<td align="left">46Qr000</td>
<td align="left">Urine buprenorphine positive</td>
</tr>
<tr>
<td align="left">677T.00</td>
<td align="left">Substance misuse structured counselling</td>
</tr>
<tr>
<td align="left">7P22000</td>
<td align="left">Delivery of rehabilitation for drug addiction</td>
</tr>
<tr>
<td align="left">8AA..00</td>
<td align="left">Drug abuse monitoring</td>
</tr>
<tr>
<td align="left">8B23.00</td>
<td align="left">Drug addiction therapy</td>
</tr>
<tr>
<td align="left">8B23.11</td>
<td align="left">Drug addictn therap-methadone</td>
</tr>
<tr>
<td align="left">8B23.13</td>
<td align="left">Drug dependence therapy</td>
</tr>
<tr>
<td align="left">8B2M.00</td>
<td align="left">Buprenorphine maintenance therapy</td>
</tr>
<tr>
<td align="left">8B2N.00</td>
<td align="left">Drug addiction detoxification therapy - methadone</td>
</tr>
<tr>
<td align="left">8B2P.00</td>
<td align="left">Drug addiction maintenance therapy - methadone</td>
</tr>
<tr>
<td align="left">8B2Q.00</td>
<td align="left">Drug addiction maintenance therapy - buprenorphine</td>
</tr>
<tr>
<td align="left">8B2R.00</td>
<td align="left">Drug addiction detoxification therapy - buprenorphine</td>
</tr>
<tr>
<td align="left">8B2S.00</td>
<td align="left">Opioid agonist substitution therapy</td>
</tr>
<tr>
<td align="left">8B2T.00</td>
<td align="left">Opioid antagonist therapy</td>
</tr>
<tr>
<td align="left">8BA9.00</td>
<td align="left">Detoxification dependence drug</td>
</tr>
<tr>
<td align="left">8BAc.00</td>
<td align="left">Substance misuse management stopped - self withdrawal</td>
</tr>
<tr>
<td align="left">8BAd.00</td>
<td align="left">Opiate dependence detoxification</td>
</tr>
<tr>
<td align="left">8BE0.00</td>
<td align="left">Reinduction to methadone maintenance therapy</td>
</tr>
<tr>
<td align="left">8BE1.00</td>
<td align="left">Reinduction to buprenorphine maintenance therapy</td>
</tr>
<tr>
<td align="left">8H7x.00</td>
<td align="left">Referral to drug abuse counsellor</td>
</tr>
<tr>
<td align="left">8Hh1.00</td>
<td align="left">Self referral to substance misuse service</td>
</tr>
<tr>
<td align="left">8HkF.00</td>
<td align="left">Referral to substance misuse service</td>
</tr>
<tr>
<td align="left">8Hq..00</td>
<td align="left">Admission to substance misuse detoxification centre</td>
</tr>
<tr>
<td align="left">9G21.00</td>
<td align="left">Drug addict notific to CMO</td>
</tr>
<tr>
<td align="left">9G22.00</td>
<td align="left">Drug addict re-notific due</td>
</tr>
<tr>
<td align="left">9G23.00</td>
<td align="left">Drug addict re-notif to CMO</td>
</tr>
<tr>
<td align="left">9G24.00</td>
<td align="left">Drug addict-notify local SMR22</td>
</tr>
<tr>
<td align="left">9G2..00</td>
<td align="left">Drug addiction notification</td>
</tr>
<tr>
<td align="left">9G2..11</td>
<td align="left">Drug addict notific admin</td>
</tr>
<tr>
<td align="left">9G2Z.00</td>
<td align="left">Drug addiction notif NOS</td>
</tr>
<tr>
<td align="left">9HC0.00</td>
<td align="left">Initial substance misuse assessment</td>
</tr>
<tr>
<td align="left">9HC1.00</td>
<td align="left">Follow up substance misuse assessment</td>
</tr>
<tr>
<td align="left">9HC2.00</td>
<td align="left">Substance misuse clinical management plan agreed</td>
</tr>
<tr>
<td align="left">9HC3.00</td>
<td align="left">Substance misuse clinical management plan reviewed</td>
</tr>
<tr>
<td align="left">9HC4.00</td>
<td align="left">Substance misuse treatment withdrawn</td>
</tr>
<tr>
<td align="left">9HC5.00</td>
<td align="left">Substance misuse treatment programme completed</td>
</tr>
<tr>
<td align="left">9HC6.00</td>
<td align="left">Substance misuse treatment declined</td>
</tr>
<tr>
<td align="left">9HC..00</td>
<td align="left">Substance misuse monitoring</td>
</tr>
<tr>
<td align="left">9K4..00</td>
<td align="left">SMR25a drug misuse initial assessment form</td>
</tr>
<tr>
<td align="left">9k50.00</td>
<td align="left">Drug misuse - enhanced service completed</td>
</tr>
<tr>
<td align="left">9k51.00</td>
<td align="left">Shared care drug misuse treatment - enhanced services admin</td>
</tr>
<tr>
<td align="left">9k51.11</td>
<td align="left">Shared care drug misuse treatment</td>
</tr>
<tr>
<td align="left">9k52.00</td>
<td align="left">Drug misuse treatment primary care - enhanced services admin</td>
</tr>
<tr>
<td align="left">9k53.00</td>
<td align="left">Pharmacy attended for drug misuse - enhanced services admin</td>
</tr>
<tr>
<td align="left">9k5..00</td>
<td align="left">Drug misuse - enhanced services administration</td>
</tr>
<tr>
<td align="left">9kS..00</td>
<td align="left">Drug misuse assessment declined - enhanced services administ</td>
</tr>
<tr>
<td align="left">9N1yJ00</td>
<td align="left">Seen in drug misuse clinic</td>
</tr>
<tr>
<td align="left">9N4i.00</td>
<td align="left">DNA - Did not attend substance misuse clinic</td>
</tr>
<tr>
<td align="left">9No5.00</td>
<td align="left">Seen in substance misuse clinic</td>
</tr>
<tr>
<td align="left">9s...00</td>
<td align="left">Drug misuse clinic administration</td>
</tr>
<tr>
<td align="left">E020.00</td>
<td align="left">Drug withdrawal syndrome</td>
</tr>
<tr>
<td align="left">E021000</td>
<td align="left">Drug-induced paranoid state</td>
</tr>
<tr>
<td align="left">E021100</td>
<td align="left">Drug-induced hallucinosis</td>
</tr>
<tr>
<td align="left">E021.00</td>
<td align="left">Drug-induced paranoia or hallucinatory states</td>
</tr>
<tr>
<td align="left">E021z00</td>
<td align="left">Drug-induced paranoia or hallucinatory state NOS</td>
</tr>
<tr>
<td align="left">E022.00</td>
<td align="left">Pathological drug intoxication</td>
</tr>
<tr>
<td align="left">E02..00</td>
<td align="left">Drug psychoses</td>
</tr>
<tr>
<td align="left">E02y000</td>
<td align="left">Drug-induced delirium</td>
</tr>
<tr>
<td align="left">E02y100</td>
<td align="left">Drug-induced dementia</td>
</tr>
<tr>
<td align="left">E02y300</td>
<td align="left">Drug-induced depressive state</td>
</tr>
<tr>
<td align="left">E02y400</td>
<td align="left">Drug-induced personality disorder</td>
</tr>
<tr>
<td align="left">E02y.00</td>
<td align="left">Other drug psychoses</td>
</tr>
<tr>
<td align="left">E02yz00</td>
<td align="left">Other drug psychoses NOS</td>
</tr>
<tr>
<td align="left">E02z.00</td>
<td align="left">Drug psychosis NOS</td>
</tr>
<tr>
<td align="left">E240000</td>
<td align="left">Unspecified opioid dependence</td>
</tr>
<tr>
<td align="left">E240100</td>
<td align="left">Continuous opioid dependence</td>
</tr>
<tr>
<td align="left">E240200</td>
<td align="left">Episodic opioid dependence</td>
</tr>
<tr>
<td align="left">E240300</td>
<td align="left">Opioid dependence in remission</td>
</tr>
<tr>
<td align="left">E240.00</td>
<td align="left">Opioid type drug dependence</td>
</tr>
<tr>
<td align="left">E240.11</td>
<td align="left">Heroin dependence</td>
</tr>
<tr>
<td align="left">E240.12</td>
<td align="left">Methadone dependence</td>
</tr>
<tr>
<td align="left">E240.13</td>
<td align="left">Morphine dependence</td>
</tr>
<tr>
<td align="left">E240.14</td>
<td align="left">Opium dependence</td>
</tr>
<tr>
<td align="left">E240z00</td>
<td align="left">Opioid drug dependence NOS</td>
</tr>
<tr>
<td align="left">E241000</td>
<td align="left">Hypnotic or anxiolytic dependence, unspecified</td>
</tr>
<tr>
<td align="left">E241100</td>
<td align="left">Hypnotic or anxiolytic dependence, continuous</td>
</tr>
<tr>
<td align="left">E241200</td>
<td align="left">Hypnotic or anxiolytic dependence, episodic</td>
</tr>
<tr>
<td align="left">E241300</td>
<td align="left">Hypnotic or anxiolytic dependence in remission</td>
</tr>
<tr>
<td align="left">E241.00</td>
<td align="left">Hypnotic or anxiolytic dependence</td>
</tr>
<tr>
<td align="left">E241.11</td>
<td align="left">Anxiolytic dependence</td>
</tr>
<tr>
<td align="left">E241.12</td>
<td align="left">Barbiturate dependence</td>
</tr>
<tr>
<td align="left">E241.13</td>
<td align="left">Benzodiazepine dependence</td>
</tr>
<tr>
<td align="left">E241.14</td>
<td align="left">Diazepam dependence</td>
</tr>
<tr>
<td align="left">E241.15</td>
<td align="left">Librium dependence</td>
</tr>
<tr>
<td align="left">E241.16</td>
<td align="left">Sedative dependence</td>
</tr>
<tr>
<td align="left">E241.17</td>
<td align="left">Valium dependence</td>
</tr>
<tr>
<td align="left">E241z00</td>
<td align="left">Hypnotic or anxiolytic dependence NOS</td>
</tr>
<tr>
<td align="left">E242000</td>
<td align="left">Cocaine dependence, unspecified</td>
</tr>
<tr>
<td align="left">E242100</td>
<td align="left">Cocaine dependence, continuous</td>
</tr>
<tr>
<td align="left">E242200</td>
<td align="left">Cocaine dependence, episodic</td>
</tr>
<tr>
<td align="left">E242300</td>
<td align="left">Cocaine dependence in remission</td>
</tr>
<tr>
<td align="left">E242.00</td>
<td align="left">Cocaine type drug dependence</td>
</tr>
<tr>
<td align="left">E242z00</td>
<td align="left">Cocaine drug dependence NOS</td>
</tr>
<tr>
<td align="left">E243000</td>
<td align="left">Cannabis dependence, unspecified</td>
</tr>
<tr>
<td align="left">E243100</td>
<td align="left">Cannabis dependence, continuous</td>
</tr>
<tr>
<td align="left">E243200</td>
<td align="left">Cannabis dependence, episodic</td>
</tr>
<tr>
<td align="left">E243300</td>
<td align="left">Cannabis dependence in remission</td>
</tr>
<tr>
<td align="left">E243.00</td>
<td align="left">Cannabis type drug dependence</td>
</tr>
<tr>
<td align="left">E243.11</td>
<td align="left">Hashish dependence</td>
</tr>
<tr>
<td align="left">E243.12</td>
<td align="left">Hemp dependence</td>
</tr>
<tr>
<td align="left">E243.13</td>
<td align="left">Marihuana dependence</td>
</tr>
<tr>
<td align="left">E243z00</td>
<td align="left">Cannabis drug dependence NOS</td>
</tr>
<tr>
<td align="left">E244000</td>
<td align="left">Amphetamine or psychostimulant dependence, unspecified</td>
</tr>
<tr>
<td align="left">E244011</td>
<td align="left">Amfetamine or psychostimulant dependence, unspecified</td>
</tr>
<tr>
<td align="left">E244100</td>
<td align="left">Amphetamine or psychostimulant dependence, continuous</td>
</tr>
<tr>
<td align="left">E244200</td>
<td align="left">Amphetamine or psychostimulant dependence, episodic</td>
</tr>
<tr>
<td align="left">E244300</td>
<td align="left">Amphetamine or psychostimulant dependence in remission</td>
</tr>
<tr>
<td align="left">E244.00</td>
<td align="left">Amphetamine or other psychostimulant dependence</td>
</tr>
<tr>
<td align="left">E244.11</td>
<td align="left">Psychostimulant dependence</td>
</tr>
<tr>
<td align="left">E244.12</td>
<td align="left">Stimulant dependence</td>
</tr>
<tr>
<td align="left">E244z00</td>
<td align="left">Amphetamine or psychostimulant dependence NOS</td>
</tr>
<tr>
<td align="left">E244z11</td>
<td align="left">Amfetamine or psychostimulant dependence NOS</td>
</tr>
<tr>
<td align="left">E245000</td>
<td align="left">Hallucinogen dependence, unspecified</td>
</tr>
<tr>
<td align="left">E245100</td>
<td align="left">Hallucinogen dependence, continuous</td>
</tr>
<tr>
<td align="left">E245200</td>
<td align="left">Hallucinogen dependence, episodic</td>
</tr>
<tr>
<td align="left">E245300</td>
<td align="left">Hallucinogen dependence in remission</td>
</tr>
<tr>
<td align="left">E245.00</td>
<td align="left">Hallucinogen dependence</td>
</tr>
<tr>
<td align="left">E245.11</td>
<td align="left">LSD dependence</td>
</tr>
<tr>
<td align="left">E245.12</td>
<td align="left">Lysergic acid diethylamide dependence</td>
</tr>
<tr>
<td align="left">E245z00</td>
<td align="left">Hallucinogen dependence NOS</td>
</tr>
<tr>
<td align="left">E246000</td>
<td align="left">Glue sniffing dependence, unspecified</td>
</tr>
<tr>
<td align="left">E246100</td>
<td align="left">Glue sniffing dependence, continuous</td>
</tr>
<tr>
<td align="left">E246200</td>
<td align="left">Glue sniffing dependence, episodic</td>
</tr>
<tr>
<td align="left">E246300</td>
<td align="left">Glue sniffing dependence in remission</td>
</tr>
<tr>
<td align="left">E246.00</td>
<td align="left">Glue sniffing dependence</td>
</tr>
<tr>
<td align="left">E246z00</td>
<td align="left">Glue sniffing dependence NOS</td>
</tr>
<tr>
<td align="left">E247000</td>
<td align="left">Other specified drug dependence, unspecified</td>
</tr>
<tr>
<td align="left">E247100</td>
<td align="left">Other specified drug dependence, continuous</td>
</tr>
<tr>
<td align="left">E247200</td>
<td align="left">Other specified drug dependence, episodic</td>
</tr>
<tr>
<td align="left">E247300</td>
<td align="left">Other specified drug dependence in remission</td>
</tr>
<tr>
<td align="left">E247.00</td>
<td align="left">Other specified drug dependence</td>
</tr>
<tr>
<td align="left">E247.11</td>
<td align="left">Absinthe addiction</td>
</tr>
<tr>
<td align="left">E247z00</td>
<td align="left">Other specified drug dependence NOS</td>
</tr>
<tr>
<td align="left">E248000</td>
<td align="left">Combined opioid with other drug dependence, unspecified</td>
</tr>
<tr>
<td align="left">E248100</td>
<td align="left">Combined opioid with other drug dependence, continuous</td>
</tr>
<tr>
<td align="left">E248200</td>
<td align="left">Combined opioid with other drug dependence, episodic</td>
</tr>
<tr>
<td align="left">E248300</td>
<td align="left">Combined opioid with other drug dependence in remission</td>
</tr>
<tr>
<td align="left">E248.00</td>
<td align="left">Combined opioid with other drug dependence</td>
</tr>
<tr>
<td align="left">E248z00</td>
<td align="left">Combined opioid with other drug dependence NOS</td>
</tr>
<tr>
<td align="left">E249000</td>
<td align="left">Combined drug dependence, excluding opioid, unspecified</td>
</tr>
<tr>
<td align="left">E249100</td>
<td align="left">Combined drug dependence, excluding opioid, continuous</td>
</tr>
<tr>
<td align="left">E249200</td>
<td align="left">Combined drug dependence, excluding opioid, episodic</td>
</tr>
<tr>
<td align="left">E249300</td>
<td align="left">Combined drug dependence, excluding opioid, in remission</td>
</tr>
<tr>
<td align="left">E249.00</td>
<td align="left">Combined drug dependence, excluding opioids</td>
</tr>
<tr>
<td align="left">E249z00</td>
<td align="left">Combined drug dependence, excluding opioid, NOS</td>
</tr>
<tr>
<td align="left">E24A.00</td>
<td align="left">Ecstasy type drug dependence</td>
</tr>
<tr>
<td align="left">E24..00</td>
<td align="left">Drug dependence</td>
</tr>
<tr>
<td align="left">E24..11</td>
<td align="left">Drug addiction</td>
</tr>
<tr>
<td align="left">E24z.00</td>
<td align="left">Drug dependence NOS</td>
</tr>
<tr>
<td align="left">E252000</td>
<td align="left">Nondependent cannabis abuse, unspecified</td>
</tr>
<tr>
<td align="left">E252100</td>
<td align="left">Nondependent cannabis abuse, continuous</td>
</tr>
<tr>
<td align="left">E252200</td>
<td align="left">Nondependent cannabis abuse, episodic</td>
</tr>
<tr>
<td align="left">E252300</td>
<td align="left">Nondependent cannabis abuse in remission</td>
</tr>
<tr>
<td align="left">E252.00</td>
<td align="left">Nondependent cannabis abuse</td>
</tr>
<tr>
<td align="left">E252z00</td>
<td align="left">Nondependent cannabis abuse NOS</td>
</tr>
<tr>
<td align="left">E253000</td>
<td align="left">Nondependent hallucinogen abuse, unspecified</td>
</tr>
<tr>
<td align="left">E253100</td>
<td align="left">Nondependent hallucinogen abuse, continuous</td>
</tr>
<tr>
<td align="left">E253200</td>
<td align="left">Nondependent hallucinogen abuse, episodic</td>
</tr>
<tr>
<td align="left">E253300</td>
<td align="left">Nondependent hallucinogen abuse in remission</td>
</tr>
<tr>
<td align="left">E253.00</td>
<td align="left">Nondependent hallucinogen abuse</td>
</tr>
<tr>
<td align="left">E253.11</td>
<td align="left">'Bad trips'</td>
</tr>
<tr>
<td align="left">E253.12</td>
<td align="left">LSD reaction</td>
</tr>
<tr>
<td align="left">E253z00</td>
<td align="left">Nondependent hallucinogen abuse NOS</td>
</tr>
<tr>
<td align="left">E254000</td>
<td align="left">Nondependent hypnotic or anxiolytic abuse, unspecified</td>
</tr>
<tr>
<td align="left">E254100</td>
<td align="left">Nondependent hypnotic or anxiolytic abuse, continuous</td>
</tr>
<tr>
<td align="left">E254200</td>
<td align="left">Nondependent hypnotic or anxiolytic abuse, episodic</td>
</tr>
<tr>
<td align="left">E254300</td>
<td align="left">Nondependent hypnotic or anxiolytic abuse in remission</td>
</tr>
<tr>
<td align="left">E254.00</td>
<td align="left">Nondependent hypnotic or anxiolytic abuse</td>
</tr>
<tr>
<td align="left">E254.11</td>
<td align="left">Barbiturate abuse</td>
</tr>
<tr>
<td align="left">E254.12</td>
<td align="left">Hypnotic or anxiolytic abuse</td>
</tr>
<tr>
<td align="left">E254.13</td>
<td align="left">Sedative abuse</td>
</tr>
<tr>
<td align="left">E254.14</td>
<td align="left">Tranquilliser abuse</td>
</tr>
<tr>
<td align="left">E254z00</td>
<td align="left">Nondependent hypnotic or anxiolytic abuse NOS</td>
</tr>
<tr>
<td align="left">E255000</td>
<td align="left">Nondependent opioid abuse, unspecified</td>
</tr>
<tr>
<td align="left">E255100</td>
<td align="left">Nondependent opioid abuse, continuous</td>
</tr>
<tr>
<td align="left">E255200</td>
<td align="left">Nondependent opioid abuse, episodic</td>
</tr>
<tr>
<td align="left">E255300</td>
<td align="left">Nondependent opioid abuse in remission</td>
</tr>
<tr>
<td align="left">E255.00</td>
<td align="left">Nondependent opioid abuse</td>
</tr>
<tr>
<td align="left">E255z00</td>
<td align="left">Nondependent opioid abuse NOS</td>
</tr>
<tr>
<td align="left">E256000</td>
<td align="left">Nondependent cocaine abuse, unspecified</td>
</tr>
<tr>
<td align="left">E256100</td>
<td align="left">Nondependent cocaine abuse, continuous</td>
</tr>
<tr>
<td align="left">E256200</td>
<td align="left">Nondependent cocaine abuse, episodic</td>
</tr>
<tr>
<td align="left">E256300</td>
<td align="left">Nondependent cocaine abuse in remission</td>
</tr>
<tr>
<td align="left">E256.00</td>
<td align="left">Nondependent cocaine abuse</td>
</tr>
<tr>
<td align="left">E256z00</td>
<td align="left">Nondependent cocaine abuse NOS</td>
</tr>
<tr>
<td align="left">E257000</td>
<td align="left">Nondependent amphetamine/psychostimulant abuse, unspecified</td>
</tr>
<tr>
<td align="left">E257100</td>
<td align="left">Nondependent amphetamine/psychostimulant abuse, continuous</td>
</tr>
<tr>
<td align="left">E257200</td>
<td align="left">Nondependent amphetamine or psychostimulant abuse, episodic</td>
</tr>
<tr>
<td align="left">E257300</td>
<td align="left">Nondependent amphetamine/psychostimulant abuse in remission</td>
</tr>
<tr>
<td align="left">E257.00</td>
<td align="left">Nondependent amphetamine or other psychostimulant abuse</td>
</tr>
<tr>
<td align="left">E257.11</td>
<td align="left">Psychostimulant abuse</td>
</tr>
<tr>
<td align="left">E257.12</td>
<td align="left">Stimulant abuse</td>
</tr>
<tr>
<td align="left">E257z00</td>
<td align="left">Nondependent amphetamine or psychostimulant abuse NOS</td>
</tr>
<tr>
<td align="left">E258.00</td>
<td align="left">Nondependent antidepressant type drug abuse</td>
</tr>
<tr>
<td align="left">E258z00</td>
<td align="left">Nondependent antidepressant type drug abuse NOS</td>
</tr>
<tr>
<td align="left">E259000</td>
<td align="left">Nondependent mixed drug abuse, unspecified</td>
</tr>
<tr>
<td align="left">E259100</td>
<td align="left">Nondependent mixed drug abuse, continuous</td>
</tr>
<tr>
<td align="left">E259200</td>
<td align="left">Nondependent mixed drug abuse, episodic</td>
</tr>
<tr>
<td align="left">E259300</td>
<td align="left">Nondependent mixed drug abuse in remission</td>
</tr>
<tr>
<td align="left">E259400</td>
<td align="left">Misuse of prescription only drugs</td>
</tr>
<tr>
<td align="left">E259.00</td>
<td align="left">Nondependent mixed drug abuse</td>
</tr>
<tr>
<td align="left">E259z00</td>
<td align="left">Nondependent mixed drug abuse NOS</td>
</tr>
<tr>
<td align="left">E25..00</td>
<td align="left">Nondependent abuse of drugs</td>
</tr>
<tr>
<td align="left">E25y000</td>
<td align="left">Nondependent other drug abuse, unspecified</td>
</tr>
<tr>
<td align="left">E25y100</td>
<td align="left">Nondependent other drug abuse, continuous</td>
</tr>
<tr>
<td align="left">E25y200</td>
<td align="left">Nondependent other drug abuse, episodic</td>
</tr>
<tr>
<td align="left">E25y300</td>
<td align="left">Nondependent other drug abuse in remission</td>
</tr>
<tr>
<td align="left">E25y.00</td>
<td align="left">Nondependent other drug abuse</td>
</tr>
<tr>
<td align="left">E25y.11</td>
<td align="left">Analgesic abuse</td>
</tr>
<tr>
<td align="left">E25yz00</td>
<td align="left">Nondependent other drug abuse NOS</td>
</tr>
<tr>
<td align="left">E25z.00</td>
<td align="left">Misuse of drugs NOS</td>
</tr>
<tr>
<td align="left">Eu11000</td>
<td align="left">[X]Mental & behav dis due to use opioids: acute intoxication</td>
</tr>
<tr>
<td align="left">Eu11100</td>
<td align="left">[X]Mental and behav dis due to use of opioids: harmful use</td>
</tr>
<tr>
<td align="left">Eu11200</td>
<td align="left">[X]Mental and behav dis due to use opioids: dependence syndr</td>
</tr>
<tr>
<td align="left">Eu11211</td>
<td align="left">[X]Drug addiction - opioids</td>
</tr>
<tr>
<td align="left">Eu11212</td>
<td align="left">[X]Heroin addiction</td>
</tr>
<tr>
<td align="left">Eu11300</td>
<td align="left">[X]Mental and behav dis due to use opioids: withdrawal state</td>
</tr>
<tr>
<td align="left">Eu11311</td>
<td align="left">[X]Cold turkey, opiate withdrawal</td>
</tr>
<tr>
<td align="left">Eu11400</td>
<td align="left">[X]Men & behav dis due opioid: withdrawl state with delirium</td>
</tr>
<tr>
<td align="left">Eu11500</td>
<td align="left">[X]Mental & behav dis due to use opioids: psychotic disorder</td>
</tr>
<tr>
<td align="left">Eu11600</td>
<td align="left">[X]Mental and behav dis due to use opioids: amnesic syndrome</td>
</tr>
<tr>
<td align="left">Eu11700</td>
<td align="left">[X]Men & beh dis due opioids: resid & late-onset psychot dis</td>
</tr>
<tr>
<td align="left">Eu11.00</td>
<td align="left">[X]Mental and behavioural disorders due to use of opioids</td>
</tr>
<tr>
<td align="left">Eu11y00</td>
<td align="left">[X]Men & behav dis due to use opioids: oth men & behav dis</td>
</tr>
<tr>
<td align="left">Eu11z00</td>
<td align="left">[X]Ment & behav dis due use opioids: unsp ment & behav dis</td>
</tr>
<tr>
<td align="left">Eu12000</td>
<td align="left">[X]Mental & behav dis due cannabinoids: acute intoxication</td>
</tr>
<tr>
<td align="left">Eu12100</td>
<td align="left">[X]Mental and behav dis due to use cannabinoids: harmful use</td>
</tr>
<tr>
<td align="left">Eu12200</td>
<td align="left">[X]Mental and behav dis due to cannabinoids: dependence synd</td>
</tr>
<tr>
<td align="left">Eu12211</td>
<td align="left">[X]Drug addiction - cannabis</td>
</tr>
<tr>
<td align="left">Eu12300</td>
<td align="left">[X]Mental and behav dis due cannabinoids: withdrawal state</td>
</tr>
<tr>
<td align="left">Eu12500</td>
<td align="left">[X]Mental & behav dis due to cannabinoids: psychotic disordr</td>
</tr>
<tr>
<td align="left">Eu12600</td>
<td align="left">[X]Mental and behav dis due to use cannabinoids: amnesic syn</td>
</tr>
<tr>
<td align="left">Eu12700</td>
<td align="left">[X]Mnt/bh dis due cannabinds: resid & late-onset psychot dis</td>
</tr>
<tr>
<td align="left">Eu12.00</td>
<td align="left">[X]Mental and behavioural disorders due to use cannabinoids</td>
</tr>
<tr>
<td align="left">Eu12y00</td>
<td align="left">[X]Men/behav dis due to use cannabinoids: oth men/behav disd</td>
</tr>
<tr>
<td align="left">Eu12z00</td>
<td align="left">[X]Ment/behav dis due use cannabinoids: unsp ment/behav disd</td>
</tr>
<tr>
<td align="left">Eu13000</td>
<td align="left">[X]Mental & behav dis due seds/hypntcs: acute intoxication</td>
</tr>
<tr>
<td align="left">Eu13100</td>
<td align="left">[X]Mental and behav dis due to use seds/hypntcs: harmful use</td>
</tr>
<tr>
<td align="left">Eu13200</td>
<td align="left">[X]Mental and behav dis due to seds/hypntcs: dependence synd</td>
</tr>
<tr>
<td align="left">Eu13211</td>
<td align="left">[X]Drug addiction- sedative / hypnotics</td>
</tr>
<tr>
<td align="left">Eu13300</td>
<td align="left">[X]Mental and behav dis due seds/hypntcs: withdrawal state</td>
</tr>
<tr>
<td align="left">Eu13400</td>
<td align="left">[X]Men & beh dis due seds/hypns: withdrwl state wth delirium</td>
</tr>
<tr>
<td align="left">Eu13500</td>
<td align="left">[X]Mental & behav dis due to seds/hypntcs: psychotic disordr</td>
</tr>
<tr>
<td align="left">Eu13.00</td>
<td align="left">[X]Mental and behavioural dis due use sedatives/hypnotics</td>
</tr>
<tr>
<td align="left">Eu14000</td>
<td align="left">[X]Mental & behav dis due to use cocaine: acute intoxication</td>
</tr>
<tr>
<td align="left">Eu14100</td>
<td align="left">[X]Mental and behav dis due to use of cocaine: harmful use</td>
</tr>
<tr>
<td align="left">Eu14200</td>
<td align="left">[X]Mental and behav dis due to use cocaine: dependence syndr</td>
</tr>
<tr>
<td align="left">Eu14211</td>
<td align="left">[X]Drug addiction - cocaine</td>
</tr>
<tr>
<td align="left">Eu14300</td>
<td align="left">[X]Mental and behav dis due to use cocaine: withdrawal state</td>
</tr>
<tr>
<td align="left">Eu14500</td>
<td align="left">[X]Mental & behav dis due to use cocaine: psychotic disorder</td>
</tr>
<tr>
<td align="left">Eu14700</td>
<td align="left">[X]Men & beh dis due cocaine: resid & late-onset psychot dis</td>
</tr>
<tr>
<td align="left">Eu14.00</td>
<td align="left">[X]Mental and behavioural disorders due to use of cocaine</td>
</tr>
<tr>
<td align="left">Eu15000</td>
<td align="left">[X]Mnt/beh dis due oth stim inc caffein: acute intoxication</td>
</tr>
<tr>
<td align="left">Eu15100</td>
<td align="left">[X]Ment/behav dis due to use oth stims inc caff: harmful use</td>
</tr>
<tr>
<td align="left">Eu15200</td>
<td align="left">[X]Mental and behav dis oth stim inc caffein: dependnce synd</td>
</tr>
<tr>
<td align="left">Eu15211</td>
<td align="left">[X]Drug addiction-other stimul</td>
</tr>
<tr>
<td align="left">Eu15300</td>
<td align="left">[X]Mnt/behav dis other stimlnts inc caffeine: withdrwl state</td>
</tr>
<tr>
<td align="left">Eu15500</td>
<td align="left">[X]Mental/behav dis oth stims inc caffeine: psychotic dis</td>
</tr>
<tr>
<td align="left">Eu15700</td>
<td align="left">[X]Mnt/bh dis oth stm inc caffne resid/late-onset psycht dis</td>
</tr>
<tr>
<td align="left">Eu15.00</td>
<td align="left">[X]Mental & behav disorder due other stimulants inc caffein</td>
</tr>
<tr>
<td align="left">Eu15z00</td>
<td align="left">[X]Ment/beh dis oth stims inc caffeine: unsp ment/behav disd</td>
</tr>
<tr>
<td align="left">Eu16000</td>
<td align="left">[X]Mental & behav dis due hallucinogens: acute intoxicatn</td>
</tr>
<tr>
<td align="left">Eu16100</td>
<td align="left">[X]Mental and behav dis due to use hallucinogens: harmfl use</td>
</tr>
<tr>
<td align="left">Eu16200</td>
<td align="left">[X]Mental and behav dis due to hallucinogens: dependence syn</td>
</tr>
<tr>
<td align="left">Eu16211</td>
<td align="left">[X]Drug addiction - hallucinogen</td>
</tr>
<tr>
<td align="left">Eu16300</td>
<td align="left">[X]Mental and behav dis due hallucinogens: withdrawal state</td>
</tr>
<tr>
<td align="left">Eu16500</td>
<td align="left">[X]Mental & behav dis due to hallucinogens: psychotic disord</td>
</tr>
<tr>
<td align="left">Eu16700</td>
<td align="left">[X]Mnt/bh dis due hallucngns: resid & late-onset psychot dis</td>
</tr>
<tr>
<td align="left">Eu16711</td>
<td align="left">[X]Post hallucinogen perception disorder</td>
</tr>
<tr>
<td align="left">Eu16.00</td>
<td align="left">[X]Mental and behavioural disorders due to use hallucinogens</td>
</tr>
<tr>
<td align="left">Eu16z00</td>
<td align="left">[X]Ment/behav dis due use hallucinogens: unsp ment/behav dis</td>
</tr>
<tr>
<td align="left">Eu18000</td>
<td align="left">[X]Mental & behav dis due vol solvents: acute intoxication</td>
</tr>
<tr>
<td align="left">Eu18100</td>
<td align="left">[X]Mental and behav dis due volatile solvents: harmful use</td>
</tr>
<tr>
<td align="left">Eu18200</td>
<td align="left">[X]Mental and behav dis due to vol solvents: dependence synd</td>
</tr>
<tr>
<td align="left">Eu18211</td>
<td align="left">[X]Drug addiction - solvent</td>
</tr>
<tr>
<td align="left">Eu18400</td>
<td align="left">[X]Men & beh dis vol solvents: withdrawal state wth delirium</td>
</tr>
<tr>
<td align="left">Eu18500</td>
<td align="left">[X]Mental & behav dis due to vol solvents: psychotic disordr</td>
</tr>
<tr>
<td align="left">Eu18.00</td>
<td align="left">[X]Mental & behav disorders due to use of volatile solvents</td>
</tr>
<tr>
<td align="left">Eu18z00</td>
<td align="left">[X]Ment/behav dis due use vol solvents: unsp ment/behav dis</td>
</tr>
<tr>
<td align="left">Eu19000</td>
<td align="left">[X]Mental/behav dis multi drg use/psychoac subs: acute intox</td>
</tr>
<tr>
<td align="left">Eu19100</td>
<td align="left">[X]Mental and behav dis mlti drg/oth psychoa sbs: harmfl use</td>
</tr>
<tr>
<td align="left">Eu19200</td>
<td align="left">[X]Mental and behav dis mlti/oth psych sbs: dependence syndr</td>
</tr>
<tr>
<td align="left">Eu19211</td>
<td align="left">[X]Drug addiction NOS</td>
</tr>
<tr>
<td align="left">Eu19300</td>
<td align="left">[X]Mental and behav dis mlti/oth psychoa sbs: withdrwl state</td>
</tr>
<tr>
<td align="left">Eu19400</td>
<td align="left">[X]Mnt/bh dis mlti drg use/oth psy sbs: wthdr state + dlrium</td>
</tr>
<tr>
<td align="left">Eu19500</td>
<td align="left">[X]Ment/behav dis mlti drug use/oth psyc sbs: psychotc dis</td>
</tr>
<tr>
<td align="left">Eu19600</td>
<td align="left">[X]Mental/behav dis multi drg use/oth psy sbs: amnesic syndr</td>
</tr>
<tr>
<td align="left">Eu19700</td>
<td align="left">[X]Men/beh dis mlt drg use/oth subs: resid/late psychot dis</td>
</tr>
<tr>
<td align="left">Eu19.00</td>
<td align="left">[X]Men & behav disorder multiple drug use/psychoactive subst</td>
</tr>
<tr>
<td align="left">Eu19y00</td>
<td align="left">[X]Men/beh dis mlt drg use/oth psy sbs: oth men & behav dis</td>
</tr>
<tr>
<td align="left">Eu19z00</td>
<td align="left">[X]Ment/beh dis multi drug use/oth psy sbs unsp mnt/beh dis</td>
</tr>
<tr>
<td align="left">Eu1A000</td>
<td align="left">[X]Ment behav dis due use crack cocaine: acute intoxication</td>
</tr>
<tr>
<td align="left">Eu1A100</td>
<td align="left">[X]Mental behav disorders due use crack cocaine: harmful use</td>
</tr>
<tr>
<td align="left">Eu1A200</td>
<td align="left">[X]Mental behav disorders due use crack cocaine: depend synd</td>
</tr>
<tr>
<td align="left">Eu1A300</td>
<td align="left">[X]Mental behav disord due crack cocaine: withdrawal state</td>
</tr>
<tr>
<td align="left">Eu1A500</td>
<td align="left">[X]Mental behav disord due crack cocaine: psychotic disorder</td>
</tr>
<tr>
<td align="left">Eu1A.00</td>
<td align="left">[X]Mental and behavioural disorders due use of crack cocaine</td>
</tr>
<tr>
<td align="left">Eu1Az00</td>
<td align="left">[X]Ment behav dis due crack cocaine: unsp ment and behav dis</td>
</tr>
<tr>
<td align="left">Eu1..00</td>
<td align="left">[X]Mental and behavioural disorders due to psychoactive subs</td>
</tr>
<tr>
<td align="left">TJ51.00</td>
<td align="left">Adverse reaction to methadone</td>
</tr>
<tr>
<td align="left">TJ52100</td>
<td align="left">Adverse reaction to buprenorphine</td>
</tr>
<tr>
<td align="left">U605012</td>
<td align="left">[X] Adverse reaction to methadone</td>
</tr>
<tr>
<td align="left">U605015</td>
<td align="left">[X] Adverse reaction to buprenorphine</td>
</tr>
<tr>
<td align="left">Z1Q6200</td>
<td align="left">Methadone maintenance</td>
</tr>
<tr>
<td align="left">Z1Q6212</td>
<td align="left">Methadone therapy</td>
</tr>
<tr>
<td align="left">Z1Q6214</td>
<td align="left">Heroin maintenance</td>
</tr>
<tr>
<td align="left">Z416.00</td>
<td align="left">Substance abuse counselling</td>
</tr>
<tr>
<td align="left">ZV11400</td>
<td align="left">[V]Personal history of psychoactive substance abuse</td>
</tr>
<tr>
<td align="left">ZV11500</td>
<td align="left">[V]Personal history of drug abuse by injection</td>
</tr>
<tr>
<td align="left">ZV6D700</td>
<td align="left">[V]Drug abuse counselling and surveillance</td>
</tr>
</tbody>
</table>
<h4>Secondary care diagnoses (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//secondary_care/ICD_substance_misuse.csv'>ICD_substance_misuse.csv</a>)</h4>
<table>
<thead>
<tr>
<th>ICD-10 code</th>
<th>ICD-10 Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left">F11</td>
<td align="left">Mental and behavioural disorders due to use of opioids</td>
</tr>
<tr>
<td align="left">F12</td>
<td align="left">Mental and behavioural disorders due to use of cannabinoids</td>
</tr>
<tr>
<td align="left">F13</td>
<td align="left">Mental and behavioural disorders due to use of sedatives or hypnotics</td>
</tr>
<tr>
<td align="left">F14</td>
<td align="left">Mental and behavioural disorders due to use of cocaine</td>
</tr>
<tr>
<td align="left">F15</td>
<td align="left">Mental and behavioural disorders due to use of other stimulants, including caffeine</td>
</tr>
<tr>
<td align="left">F16</td>
<td align="left">Mental and behavioural disorders due to use of hallucinogens</td>
</tr>
<tr>
<td align="left">F18</td>
<td align="left">Mental and behavioural disorders due to use of volatile solvents</td>
</tr>
<tr>
<td align="left">F19</td>
<td align="left">Mental and behavioural disorders due to multiple drug use and use of other psychoactive substances</td>
</tr>
</tbody>
</table>
<h2>Pancreatitis</h2>
<h4>Implementation</h4>
~~~
At the specified date, a patient is defined as having had 'Pancreatitis' IF they meet the criteria for any of the following on or before the specified date. The earliest date on which the individual meets any of the following criteria on or before the specified date is defined as the first event date:
Primary care
1. 'Pancreatitis' diagnosis or history of diagnosis or procedure during a consultation
OR
Secondary care
1. ALL diagnoses of 'Pancreatitis' or history of diagnosis during a hospitalization
~~~
<h4>Primary care (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//primary_care/CPRD_pancreatitis.csv'>CPRD_pancreatitis.csv</a>)</h4>
<table>
<thead>
<tr>
<th>Read code</th>
<th>Read Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left">14CG.00</td>
<td align="left">History of acute pancreatitis</td>
</tr>
<tr>
<td align="left">14CH.00</td>
<td align="left">History of chronic pancreatitis</td>
</tr>
<tr>
<td align="left">A723.00</td>
<td align="left">Mumps pancreatitis</td>
</tr>
<tr>
<td align="left">A785100</td>
<td align="left">Cytomegaloviral pancreatitis</td>
</tr>
<tr>
<td align="left">D201612</td>
<td align="left">Pancytopenia with pancreatitis</td>
</tr>
<tr>
<td align="left">J670000</td>
<td align="left">Acute pancreatitis unspecified</td>
</tr>
<tr>
<td align="left">J670100</td>
<td align="left">Acute recurrent pancreatitis</td>
</tr>
<tr>
<td align="left">J670200</td>
<td align="left">Acute haemorrhagic pancreatitis</td>
</tr>
<tr>
<td align="left">J670300</td>
<td align="left">Acute suppurative pancreatitis</td>
</tr>
<tr>
<td align="left">J670400</td>
<td align="left">Subacute pancreatitis</td>
</tr>
<tr>
<td align="left">J670500</td>
<td align="left">Gallstone acute pancreatitis</td>
</tr>
<tr>
<td align="left">J670600</td>
<td align="left">Idiopathic acute pancreatitis</td>
</tr>
<tr>
<td align="left">J670700</td>
<td align="left">Biliary acute pancreatitis</td>
</tr>
<tr>
<td align="left">J670800</td>
<td align="left">Alcohol-induced acute pancreatitis</td>
</tr>
<tr>
<td align="left">J670900</td>
<td align="left">Drug-induced acute pancreatitis</td>
</tr>
<tr>
<td align="left">J670.00</td>
<td align="left">Acute pancreatitis</td>
</tr>
<tr>
<td align="left">J670y00</td>
<td align="left">Other acute pancreatitis</td>
</tr>
<tr>
<td align="left">J670z00</td>
<td align="left">Acute pancreatitis NOS</td>
</tr>
<tr>
<td align="left">J670z11</td>
<td align="left">Pancreatitis</td>
</tr>
<tr>
<td align="left">J671000</td>
<td align="left">Alcohol-induced chronic pancreatitis</td>
</tr>
<tr>
<td align="left">J671100</td>
<td align="left">Gallstone chronic pancreatitis</td>
</tr>
<tr>
<td align="left">J671.00</td>
<td align="left">Chronic pancreatitis</td>
</tr>
<tr>
<td align="left">J672100</td>
<td align="left">Pseudocyst of pancreas</td>
</tr>
<tr>
<td align="left">Jyu8400</td>
<td align="left">[X]Other chronic pancreatitis</td>
</tr>
</tbody>
</table>
<h4>Secondary care diagnoses (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//secondary_care/ICD_pancreatitis.csv'>ICD_pancreatitis.csv</a>)</h4>
<table>
<thead>
<tr>
<th>ICD-10 code</th>
<th>ICD-10 Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left">K85</td>
<td align="left">Acute pancreatitis</td>
</tr>
<tr>
<td align="left">K86.0</td>
<td align="left">Alcohol-induced chronic pancreatitis</td>
</tr>
<tr>
<td align="left">K86.1</td>
<td align="left">Other chronic pancreatitis</td>
</tr>
<tr>
<td align="left">K86.3</td>
<td align="left">Pseudocyst of pancreas</td>
</tr>
</tbody>
</table>
<h2>Parasitic infections</h2>
<h4>Implementation</h4>
~~~
At the specified date, a patient is defined as having had 'Parasitic infections' IF they meet the criteria for any of the following on or before the specified date. The earliest date on which the individual meets any of the following criteria on or before the specified date is defined as the first event date:
Secondary care
1. ALL diagnoses of 'Parasitic infections' or history of diagnosis during a hospitalization
~~~
<h4>Secondary care diagnoses (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//secondary_care/ICD_parasitic.csv'>ICD_parasitic.csv</a>)</h4>
<table>
<thead>
<tr>
<th>ICD-10 code</th>
<th>ICD-10 Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left">A06</td>
<td align="left">Amoebiasis</td>
</tr>
<tr>
<td align="left">A07</td>
<td align="left">Other protozoal intestinal diseases</td>
</tr>
<tr>
<td align="left">A59</td>
<td align="left">Trichomoniasis</td>
</tr>
<tr>
<td align="left">B50</td>
<td align="left">Plasmodium falciparum malaria</td>
</tr>
<tr>
<td align="left">B51</td>
<td align="left">Plasmodium vivax malaria</td>
</tr>
<tr>
<td align="left">B52</td>
<td align="left">Plasmodium malariae malaria</td>
</tr>
<tr>
<td align="left">B53</td>
<td align="left">Other parasitologically confirmed malaria</td>
</tr>
<tr>
<td align="left">B54</td>
<td align="left">Unspecified malaria</td>
</tr>
<tr>
<td align="left">B55</td>
<td align="left">Leishmaniasis</td>
</tr>
<tr>
<td align="left">B56</td>
<td align="left">African trypanosomiasis</td>
</tr>
<tr>
<td align="left">B57</td>
<td align="left">Chagas' disease</td>
</tr>
<tr>
<td align="left">B58</td>
<td align="left">Toxoplasmosis</td>
</tr>
<tr>
<td align="left">B60</td>
<td align="left">Other protozoal diseases, not elsewhere classified</td>
</tr>
<tr>
<td align="left">B64</td>
<td align="left">Unspecified protozoal disease</td>
</tr>
<tr>
<td align="left">B65</td>
<td align="left">Schistosomiasis [bilharziasis]</td>
</tr>
<tr>
<td align="left">B66</td>
<td align="left">Other fluke infections</td>
</tr>
<tr>
<td align="left">B67</td>
<td align="left">Echinococcosis</td>
</tr>
<tr>
<td align="left">B68</td>
<td align="left">Taeniasis</td>
</tr>
<tr>
<td align="left">B69</td>
<td align="left">Cysticercosis</td>
</tr>
<tr>
<td align="left">B70</td>
<td align="left">Diphyllobothriasis and sparganosis</td>
</tr>
<tr>
<td align="left">B71</td>
<td align="left">Other cestode infections</td>
</tr>
<tr>
<td align="left">B72</td>
<td align="left">Dracunculiasis</td>
</tr>
<tr>
<td align="left">B73</td>
<td align="left">Onchocerciasis</td>
</tr>
<tr>
<td align="left">B74</td>
<td align="left">Filariasis</td>
</tr>
<tr>
<td align="left">B75</td>
<td align="left">Trichinellosis</td>
</tr>
<tr>
<td align="left">B76</td>
<td align="left">Hookworm diseases</td>
</tr>
<tr>
<td align="left">B77</td>
<td align="left">Ascariasis</td>
</tr>
<tr>
<td align="left">B78</td>
<td align="left">Strongyloidiasis</td>
</tr>
<tr>
<td align="left">B79</td>
<td align="left">Trichuriasis</td>
</tr>
<tr>
<td align="left">B80</td>
<td align="left">Enterobiasis</td>
</tr>
<tr>
<td align="left">B81</td>
<td align="left">Other intestinal helminthiases, not elsewhere classified</td>
</tr>
<tr>
<td align="left">B82</td>
<td align="left">Unspecified intestinal parasitism</td>
</tr>
<tr>
<td align="left">B83</td>
<td align="left">Other helminthiases</td>
</tr>
<tr>
<td align="left">B85</td>
<td align="left">Pediculosis and phthiriasis</td>
</tr>
<tr>
<td align="left">B86</td>
<td align="left">Scabies</td>
</tr>
<tr>
<td align="left">B87</td>
<td align="left">Myiasis</td>
</tr>
<tr>
<td align="left">B88</td>
<td align="left">Other infestations</td>
</tr>
<tr>
<td align="left">B89</td>
<td align="left">Unspecified parasitic disease</td>
</tr>
<tr>
<td align="left">J17.3</td>
<td align="left">Pneumonia in parasitic diseases</td>
</tr>
<tr>
<td align="left">K23.1</td>
<td align="left">Megaoesophagus in Chagas' disease</td>
</tr>
<tr>
<td align="left">P37.1</td>
<td align="left">Congenital toxoplasmosis</td>
</tr>
</tbody>
</table>
<h2>Parkinson's disease</h2>
<h4>Implementation</h4>
~~~
At the specified date, a patient is defined as having had 'Parkinson's disease' IF they meet the criteria for any of the following on or before the specified date. The earliest date on which the individual meets any of the following criteria on or before the specified date is defined as the first event date:
Primary care
1. 'Parkinson's disease' diagnosis or history of diagnosis during a consultation
OR
Secondary care
1. ALL diagnoses of 'Parkinson's disease' or history of diagnosis during a hospitalization
~~~
<h4>Primary care (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//primary_care/CPRD_Parkinsons.csv'>CPRD_Parkinsons.csv</a>)</h4>
<table>
<thead>
<tr>
<th>Read code</th>
<th>Read Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left">147F.00</td>
<td align="left">History of Parkinson's disease</td>
</tr>
<tr>
<td align="left">Eu02300</td>
<td align="left">[X]Dementia in Parkinson's disease</td>
</tr>
<tr>
<td align="left">F11x900</td>
<td align="left">Cerebral degeneration in Parkinson's disease</td>
</tr>
<tr>
<td align="left">F120.00</td>
<td align="left">Paralysis agitans</td>
</tr>
<tr>
<td align="left">F12..00</td>
<td align="left">Parkinson's disease</td>
</tr>
<tr>
<td align="left">F12z.00</td>
<td align="left">Parkinson's disease NOS</td>
</tr>
</tbody>
</table>
<h4>Secondary care diagnoses (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//secondary_care/ICD_Parkinsons.csv'>ICD_Parkinsons.csv</a>)</h4>
<table>
<thead>
<tr>
<th>ICD-10 code</th>
<th>ICD-10 Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left">F02.3</td>
<td align="left">Dementia in Parkinson's disease</td>
</tr>
<tr>
<td align="left">G20</td>
<td align="left">Parkinson's disease</td>
</tr>
</tbody>
</table>
<h2>Patent ductus arteriosus</h2>
<h4>Implementation</h4>
~~~
At the specified date, a patient is defined as having had 'Patent ductus arteriosus' IF they meet the criteria for any of the following on or before the specified date. The earliest date on which the individual meets any of the following criteria on or before the specified date is defined as the first event date:
Primary care
1. 'Patent ductus arteriosus' diagnosis or history of diagnosis or procedure during a consultation
OR
Secondary care (ICD10)
1. ALL diagnoses of 'Patent ductus arteriosus' or history of diagnosis during a hospitalization
OR
Secondary care (OPCS4)
1. ALL procedures for 'Patent ductus arteriosus' during a hospitalization
~~~
<h4>Primary care (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//primary_care/CPRD_PDA.csv'>CPRD_PDA.csv</a>)</h4>
<table>
<thead>
<tr>
<th>Read code</th>
<th>Read Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left">7A01000</td>
<td align="left">Division of patent ductus arteriosus</td>
</tr>
<tr>
<td align="left">7A01100</td>
<td align="left">Ligation of patent ductus arteriosus</td>
</tr>
<tr>
<td align="left">7A01200</td>
<td align="left">Closure of patent ductus arteriosus NEC</td>
</tr>
<tr>
<td align="left">7A01300</td>
<td align="left">Revision of correction of patent ductus arteriosus</td>
</tr>
<tr>
<td align="left">7A01.00</td>
<td align="left">Open correction of patent ductus arteriosus</td>
</tr>
<tr>
<td align="left">7A01.11</td>
<td align="left">Open correction of patent ductus arteriosus (PDA)</td>
</tr>
<tr>
<td align="left">7A01y00</td>
<td align="left">Other specified open correction of patent ductus arteriosus</td>
</tr>
<tr>
<td align="left">7A01z00</td>
<td align="left">Open correction of patent ductus arteriosus NOS</td>
</tr>
<tr>
<td align="left">7A02000</td>
<td align="left">Percut transluminal prosth occlusion patent ductus arterios</td>
</tr>
<tr>
<td align="left">7A02011</td>
<td align="left">Percut translum prosth occlus patent ductus arteriosus (PDA)</td>
</tr>
<tr>
<td align="left">P70..00</td>
<td align="left">Patent ductus arteriosus</td>
</tr>
<tr>
<td align="left">P70..11</td>
<td align="left">Botalli's patent ductus</td>
</tr>
</tbody>
</table>
<h4>Secondary care diagnoses (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//secondary_care/ICD_PDA.csv'>ICD_PDA.csv</a>)</h4>
<table>
<thead>
<tr>
<th>ICD-10 code</th>
<th>ICD-10 Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left">Q25.0</td>
<td align="left">Patent ductus arteriosus</td>
</tr>
</tbody>
</table>
<h4>Secondary care procedures (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//secondary_care/OPCS_PDA.csv'>OPCS_PDA.csv</a>)</h4>
<table>
<thead>
<tr>
<th>OPCS-4 code</th>
<th>OPCS-4 Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left">L02</td>
<td align="left">Open correction of patent ductus arteriosus</td>
</tr>
<tr>
<td align="left">L02.1</td>
<td align="left">Division of patent ductus arteriosus</td>
</tr>
<tr>
<td align="left">L02.2</td>
<td align="left">Ligature of patent ductus arteriosus</td>
</tr>
<tr>
<td align="left">L02.3</td>
<td align="left">Closure of patent ductus arteriosus NEC</td>
</tr>
<tr>
<td align="left">L02.4</td>
<td align="left">Revision of correction of patent ductus arteriosus</td>
</tr>
<tr>
<td align="left">L02.8</td>
<td align="left">Other specified open correction of patent ductus arteriosus</td>
</tr>
<tr>
<td align="left">L02.9</td>
<td align="left">Unspecified open correction of patent ductus arteriosus</td>
</tr>
<tr>
<td align="left">L03</td>
<td align="left">Transluminal operations on abnormality of great vessel</td>
</tr>
<tr>
<td align="left">L03.1</td>
<td align="left">Percutaneous transluminal prosthetic occlusion of patent ductus arteriosus</td>
</tr>
</tbody>
</table>
<h2>Peptic ulcer disease</h2>
<h4>Implementation</h4>
~~~
At the specified date, a patient is defined as having had 'Peptic ulcer disease' disease IF they meet the criteria for any of the following on or before the specified date. The earliest date on which the individual meets any of the following criteria on or before the specified date is defined as the first event date:
Primary care
1. 'Peptic ulcer disease' disease diagnosis or history of diagnosis or procedure during a consultation
OR
Secondary care
1. ALL diagnoses of 'Peptic ulcer disease' disease or history of diagnosis during a hospitalization
OR
Secondary care (OPCS4)
1. ALL procedures for 'Peptic ulcer disease' disease during a hospitalization
~~~
<h4>Primary care (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//primary_care/CPRD_ulcer_peptic.csv'>CPRD_ulcer_peptic.csv</a>)</h4>
<table>
<thead>
<tr>
<th>Read code</th>
<th>Read Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left">14C1.00</td>
<td align="left">H/O: peptic ulcer</td>
</tr>
<tr>
<td align="left">14C1.11</td>
<td align="left">H/O: duodenal ulcer</td>
</tr>
<tr>
<td align="left">14C1.12</td>
<td align="left">H/O: gastric ulcer</td>
</tr>
<tr>
<td align="left">7612111.0</td>
<td align="left">Balfour excision of gastric ulcer</td>
</tr>
<tr>
<td align="left">7612500.0</td>
<td align="left">Resection of gastric ulcer by cautery</td>
</tr>
<tr>
<td align="left">761D500</td>
<td align="left">Endoscopic injection haemostasis of duodenal ulcer</td>
</tr>
<tr>
<td align="left">761D600</td>
<td align="left">Endoscopic injection haemostasis of gastric ulcer</td>
</tr>
<tr>
<td align="left">761J000</td>
<td align="left">Closure of perforated gastric ulcer</td>
</tr>
<tr>
<td align="left">761J100</td>
<td align="left">Closure of gastric ulcer NEC</td>
</tr>
<tr>
<td align="left">761J111</td>
<td align="left">Suture of ulcer of stomach NEC</td>
</tr>
<tr>
<td align="left">761J.00</td>
<td align="left">Operations on gastric ulcer</td>
</tr>
<tr>
<td align="left">761J.11</td>
<td align="left">Stomach ulcer operations</td>
</tr>
<tr>
<td align="left">761Jy00</td>
<td align="left">Other specified operation on gastric ulcer</td>
</tr>
<tr>
<td align="left">761Jz00</td>
<td align="left">Operation on gastric ulcer NOS</td>
</tr>
<tr>
<td align="left">7627000.0</td>
<td align="left">Closure of perforated duodenal ulcer</td>
</tr>
<tr>
<td align="left">7627100.0</td>
<td align="left">Suture of duodenal ulcer not elsewhere classified</td>
</tr>
<tr>
<td align="left">7627200.0</td>
<td align="left">Oversew of blood vessel of duodenal ulcer</td>
</tr>
<tr>
<td align="left">7627.00</td>
<td align="left">Operations on duodenal ulcer</td>
</tr>
<tr>
<td align="left">7627y00</td>
<td align="left">Other specified operation on duodenal ulcer</td>
</tr>
<tr>
<td align="left">7627z00</td>
<td align="left">Operation on duodenal ulcer NOS</td>
</tr>
<tr>
<td align="left">J110000</td>
<td align="left">Acute gastric ulcer without mention of complication</td>
</tr>
<tr>
<td align="left">J110100</td>
<td align="left">Acute gastric ulcer with haemorrhage</td>
</tr>
<tr>
<td align="left">J110111</td>
<td align="left">Bleeding acute gastric ulcer</td>
</tr>
<tr>
<td align="left">J110200</td>
<td align="left">Acute gastric ulcer with perforation</td>
</tr>
<tr>
<td align="left">J110300</td>
<td align="left">Acute gastric ulcer with haemorrhage and perforation</td>
</tr>
<tr>
<td align="left">J110400</td>
<td align="left">Acute gastric ulcer with obstruction</td>
</tr>
<tr>
<td align="left">J110.00</td>
<td align="left">Acute gastric ulcer</td>
</tr>
<tr>
<td align="left">J110y00</td>
<td align="left">Acute gastric ulcer unspecified</td>
</tr>
<tr>
<td align="left">J110z00</td>
<td align="left">Acute gastric ulcer NOS</td>
</tr>
<tr>
<td align="left">J111000</td>
<td align="left">Chronic gastric ulcer without mention of complication</td>
</tr>
<tr>
<td align="left">J111100</td>
<td align="left">Chronic gastric ulcer with haemorrhage</td>
</tr>
<tr>
<td align="left">J111111</td>
<td align="left">Bleeding chronic gastric ulcer</td>
</tr>
<tr>
<td align="left">J111200</td>
<td align="left">Chronic gastric ulcer with perforation</td>
</tr>
<tr>
<td align="left">J111211</td>
<td align="left">Perforated chronic gastric ulcer</td>
</tr>
<tr>
<td align="left">J111300</td>
<td align="left">Chronic gastric ulcer with haemorrhage and perforation</td>
</tr>
<tr>
<td align="left">J111400</td>
<td align="left">Chronic gastric ulcer with obstruction</td>
</tr>
<tr>
<td align="left">J111.00</td>
<td align="left">Chronic gastric ulcer</td>
</tr>
<tr>
<td align="left">J111y00</td>
<td align="left">Chronic gastric ulcer unspecified</td>
</tr>
<tr>
<td align="left">J111z00</td>
<td align="left">Chronic gastric ulcer NOS</td>
</tr>
<tr>
<td align="left">J112.00</td>
<td align="left">Anti-platelet induced gastric ulcer</td>
</tr>
<tr>
<td align="left">J112z00</td>
<td align="left">Anti-platelet induced gastric ulcer NOS</td>
</tr>
<tr>
<td align="left">J113.00</td>
<td align="left">Non steroidal anti inflammatory drug induced gastric ulcer</td>
</tr>
<tr>
<td align="left">J113z00</td>
<td align="left">Non steroidal anti inflammatory drug induced gastric ulc NOS</td>
</tr>
<tr>
<td align="left">J11..00</td>
<td align="left">Gastric ulcer - (GU)</td>
</tr>
<tr>
<td align="left">J11..11</td>
<td align="left">Prepyloric ulcer</td>
</tr>
<tr>
<td align="left">J11..12</td>
<td align="left">Pyloric ulcer</td>
</tr>
<tr>
<td align="left">J11y000</td>
<td align="left">Unspecified gastric ulcer without mention of complication</td>
</tr>
<tr>
<td align="left">J11y100</td>
<td align="left">Unspecified gastric ulcer with haemorrhage</td>
</tr>
<tr>
<td align="left">J11y200</td>
<td align="left">Unspecified gastric ulcer with perforation</td>
</tr>
<tr>
<td align="left">J11y400</td>
<td align="left">Unspecified gastric ulcer with obstruction</td>
</tr>
<tr>
<td align="left">J11y.00</td>
<td align="left">Unspecified gastric ulcer</td>
</tr>
<tr>
<td align="left">J11yy00</td>
<td align="left">Unspec gastric ulcer; unspec haemorrhage and/or perforation</td>
</tr>
<tr>
<td align="left">J11yz00</td>
<td align="left">Unspecified gastric ulcer NOS</td>
</tr>
<tr>
<td align="left">J11z.00</td>
<td align="left">Gastric ulcer NOS</td>
</tr>
<tr>
<td align="left">J11z.11</td>
<td align="left">Gastric erosions</td>
</tr>
<tr>
<td align="left">J11z.12</td>
<td align="left">Multiple gastric ulcers</td>
</tr>
<tr>
<td align="left">J120000</td>
<td align="left">Acute duodenal ulcer without mention of complication</td>
</tr>
<tr>
<td align="left">J120100</td>
<td align="left">Acute duodenal ulcer with haemorrhage</td>
</tr>
<tr>
<td align="left">J120200</td>
<td align="left">Acute duodenal ulcer with perforation</td>
</tr>
<tr>
<td align="left">J120300</td>
<td align="left">Acute duodenal ulcer with haemorrhage and perforation</td>
</tr>
<tr>
<td align="left">J120400</td>
<td align="left">Acute duodenal ulcer with obstruction</td>
</tr>
<tr>
<td align="left">J120.00</td>
<td align="left">Acute duodenal ulcer</td>
</tr>
<tr>
<td align="left">J120y00</td>
<td align="left">Acute duodenal ulcer unspecified</td>
</tr>
<tr>
<td align="left">J120z00</td>
<td align="left">Acute duodenal ulcer NOS</td>
</tr>
<tr>
<td align="left">J121000</td>
<td align="left">Chronic duodenal ulcer without mention of complication</td>
</tr>
<tr>
<td align="left">J121100</td>
<td align="left">Chronic duodenal ulcer with haemorrhage</td>
</tr>
<tr>
<td align="left">J121111</td>
<td align="left">Bleeding chronic duodenal ulcer</td>
</tr>
<tr>
<td align="left">J121200</td>
<td align="left">Chronic duodenal ulcer with perforation</td>
</tr>
<tr>
<td align="left">J121211</td>
<td align="left">Perforated chronic duodenal ulcer</td>
</tr>
<tr>
<td align="left">J121300</td>
<td align="left">Chronic duodenal ulcer with haemorrhage and perforation</td>
</tr>
<tr>
<td align="left">J121400</td>
<td align="left">Chronic duodenal ulcer with obstruction</td>
</tr>
<tr>
<td align="left">J121.00</td>
<td align="left">Chronic duodenal ulcer</td>
</tr>
<tr>
<td align="left">J121y00</td>
<td align="left">Chronic duodenal ulcer unspecified</td>
</tr>
<tr>
<td align="left">J121z00</td>
<td align="left">Chronic duodenal ulcer NOS</td>
</tr>
<tr>
<td align="left">J122.00</td>
<td align="left">Duodenal ulcer disease</td>
</tr>
<tr>
<td align="left">J123.00</td>
<td align="left">Duodenal erosion</td>
</tr>
<tr>
<td align="left">J124.00</td>
<td align="left">Recurrent duodenal ulcer</td>
</tr>
<tr>
<td align="left">J125.00</td>
<td align="left">Anti-platelet induced duodenal ulcer</td>
</tr>
<tr>
<td align="left">J126.00</td>
<td align="left">Non steroidal anti inflammatory drug induced duodenal ulcer</td>
</tr>
<tr>
<td align="left">J12..00</td>
<td align="left">Duodenal ulcer - (DU)</td>
</tr>
<tr>
<td align="left">J12y000</td>
<td align="left">Unspecified duodenal ulcer without mention of complication</td>
</tr>
<tr>
<td align="left">J12y100</td>
<td align="left">Unspecified duodenal ulcer with haemorrhage</td>
</tr>
<tr>
<td align="left">J12y200</td>
<td align="left">Unspecified duodenal ulcer with perforation</td>
</tr>
<tr>
<td align="left">J12y300</td>
<td align="left">Unspecified duodenal ulcer with haemorrhage and perforation</td>
</tr>
<tr>
<td align="left">J12y400</td>
<td align="left">Unspecified duodenal ulcer with obstruction</td>
</tr>
<tr>
<td align="left">J12y.00</td>
<td align="left">Unspecified duodenal ulcer</td>
</tr>
<tr>
<td align="left">J12yy00</td>
<td align="left">Unspec duodenal ulcer; unspec haemorrhage and/or perforation</td>
</tr>
<tr>
<td align="left">J12yz00</td>
<td align="left">Unspecified duodenal ulcer NOS</td>
</tr>
<tr>
<td align="left">J12z.00</td>
<td align="left">Duodenal ulcer NOS</td>
</tr>
<tr>
<td align="left">J130000</td>
<td align="left">Acute peptic ulcer without mention of complication</td>
</tr>
<tr>
<td align="left">J130100</td>
<td align="left">Acute peptic ulcer with haemorrhage</td>
</tr>
<tr>
<td align="left">J130200</td>
<td align="left">Acute peptic ulcer with perforation</td>
</tr>
<tr>
<td align="left">J130300</td>
<td align="left">Acute peptic ulcer with haemorrhage and perforation</td>
</tr>
<tr>
<td align="left">J130.00</td>
<td align="left">Acute peptic ulcer</td>
</tr>
<tr>
<td align="left">J130y00</td>
<td align="left">Acute peptic ulcer unspecified</td>
</tr>
<tr>
<td align="left">J130z00</td>
<td align="left">Acute peptic ulcer NOS</td>
</tr>
<tr>
<td align="left">J131000</td>
<td align="left">Chronic peptic ulcer without mention of complication</td>
</tr>
<tr>
<td align="left">J131100</td>
<td align="left">Chronic peptic ulcer with haemorrhage</td>
</tr>
<tr>
<td align="left">J131200</td>
<td align="left">Chronic peptic ulcer with perforation</td>
</tr>
<tr>
<td align="left">J131400</td>
<td align="left">Chronic peptic ulcer with obstruction</td>
</tr>
<tr>
<td align="left">J131.00</td>
<td align="left">Chronic peptic ulcer</td>
</tr>
<tr>
<td align="left">J131y00</td>
<td align="left">Chronic peptic ulcer unspecified</td>
</tr>
<tr>
<td align="left">J131z00</td>
<td align="left">Chronic peptic ulcer NOS</td>
</tr>
<tr>
<td align="left">J13..00</td>
<td align="left">Peptic ulcer - (PU) site unspecified</td>
</tr>
<tr>
<td align="left">J13..11</td>
<td align="left">Stress ulcer NOS</td>
</tr>
<tr>
<td align="left">J13y000</td>
<td align="left">Unspecified peptic ulcer without mention of complication</td>
</tr>
<tr>
<td align="left">J13y100</td>
<td align="left">Unspecified peptic ulcer with haemorrhage</td>
</tr>
<tr>
<td align="left">J13y200</td>
<td align="left">Unspecified peptic ulcer with perforation</td>
</tr>
<tr>
<td align="left">J13y300</td>
<td align="left">Unspecified peptic ulcer with haemorrhage and perforation</td>
</tr>
<tr>
<td align="left">J13y400</td>
<td align="left">Unspecified peptic ulcer with obstruction</td>
</tr>
<tr>
<td align="left">J13y.00</td>
<td align="left">Unspecified peptic ulcer</td>
</tr>
<tr>
<td align="left">J13yz00</td>
<td align="left">Unspecified peptic ulcer NOS</td>
</tr>
<tr>
<td align="left">J13z.00</td>
<td align="left">Peptic ulcer NOS</td>
</tr>
<tr>
<td align="left">J140100</td>
<td align="left">Acute gastrojejunal ulcer with haemorrhage</td>
</tr>
<tr>
<td align="left">J140200</td>
<td align="left">Acute gastrojejunal ulcer with perforation</td>
</tr>
<tr>
<td align="left">J140300</td>
<td align="left">Acute gastrojejunal ulcer with haemorrhage and perforation</td>
</tr>
<tr>
<td align="left">J140.00</td>
<td align="left">Acute gastrojejunal ulcer</td>
</tr>
<tr>
<td align="left">J140z00</td>
<td align="left">Acute gastrojejunal ulcer NOS</td>
</tr>
<tr>
<td align="left">J141300</td>
<td align="left">Chronic gastrojejunal ulcer with haemorrhage and perforation</td>
</tr>
<tr>
<td align="left">J141.00</td>
<td align="left">Chronic gastrojejunal ulcer</td>
</tr>
<tr>
<td align="left">J14..00</td>
<td align="left">Gastrojejunal ulcer (GJU)</td>
</tr>
<tr>
<td align="left">J14..11</td>
<td align="left">Anastomotic ulcer</td>
</tr>
<tr>
<td align="left">J14..12</td>
<td align="left">Gastrocolic ulcer</td>
</tr>
<tr>
<td align="left">J14..13</td>
<td align="left">Jejunal ulcer</td>
</tr>
<tr>
<td align="left">J14y100</td>
<td align="left">Unspecified gastrojejunal ulcer with haemorrhage</td>
</tr>
<tr>
<td align="left">J14y200</td>
<td align="left">Unspecified gastrojejunal ulcer with perforation</td>
</tr>
<tr>
<td align="left">J14y.00</td>
<td align="left">Unspecified gastrojejunal ulcer</td>
</tr>
<tr>
<td align="left">J14yz00</td>
<td align="left">Unspecified gastrojejunal ulcer NOS</td>
</tr>
<tr>
<td align="left">J14z.00</td>
<td align="left">Gastrojejunal ulcer NOS</td>
</tr>
<tr>
<td align="left">J17y800</td>
<td align="left">Healed gastric ulcer leaving a scar</td>
</tr>
<tr>
<td align="left">ZV12711</td>
<td align="left">[V]Personal history of peptic ulcer</td>
</tr>
<tr>
<td align="left">ZV12712</td>
<td align="left">[V]Personal history of duodenal ulcer</td>
</tr>
<tr>
<td align="left">ZV12C00</td>
<td align="left">[V] Personal history of gastric ulcer</td>
</tr>
</tbody>
</table>
<h4>Secondary care diagnoses (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//secondary_care/ICD_ulcer_peptic.csv'>ICD_ulcer_peptic.csv</a>)</h4>
<table>
<thead>
<tr>
<th>ICD-10 code</th>
<th>ICD-10 Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left">K25</td>
<td align="left">Gastric ulcer</td>
</tr>
<tr>
<td align="left">K26</td>
<td align="left">Duodenal ulcer</td>
</tr>
<tr>
<td align="left">K27</td>
<td align="left">Peptic ulcer, site unspecified</td>
</tr>
<tr>
<td align="left">K28</td>
<td align="left">Gastrojejunal ulcer</td>
</tr>
</tbody>
</table>
<h4>Secondary care procedures (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//secondary_care/OPCS_ulcer_peptic.csv'>OPCS_ulcer_peptic.csv</a>)</h4>
<table>
<thead>
<tr>
<th>OPCS-4 code</th>
<th>OPCS-4 Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left">G35</td>
<td align="left">Operations on ulcer of stomach</td>
</tr>
<tr>
<td align="left">G35.1</td>
<td align="left">Closure of perforated ulcer of stomach</td>
</tr>
<tr>
<td align="left">G35.2</td>
<td align="left">Closure of ulcer of stomach NEC</td>
</tr>
<tr>
<td align="left">G35.8</td>
<td align="left">Other specified operations on ulcer of stomach</td>
</tr>
<tr>
<td align="left">G35.9</td>
<td align="left">Unspecified operations on ulcer of stomach</td>
</tr>
<tr>
<td align="left">G52</td>
<td align="left">Operations on ulcer of duodenum</td>
</tr>
<tr>
<td align="left">G52.1</td>
<td align="left">Closure of perforated ulcer of duodenum</td>
</tr>
<tr>
<td align="left">G52.2</td>
<td align="left">Suture of ulcer of duodenum NEC</td>
</tr>
<tr>
<td align="left">G52.3</td>
<td align="left">Oversew of blood vessel of duodenal ulcer</td>
</tr>
<tr>
<td align="left">G52.8</td>
<td align="left">Other specified operations on ulcer of duodenum</td>
</tr>
<tr>
<td align="left">G52.9</td>
<td align="left">Unspecified operations on ulcer of duodenum</td>
</tr>
</tbody>
</table>
<h2>Pericardial effusion (noninflammatory)</h2>
<h4>Implementation</h4>
~~~
At the specified date, a patient is defined as having had 'Pericardial effusion (noninflammatory)' IF they meet the criteria for any of the following on or before the specified date. The earliest date on which the individual meets any of the following criteria on or before the specified date is defined as the first event date:
Primary care
1. 'Pericardial effusion (noninflammatory)' (noninflammatory) diagnosis or history of diagnosis during a consultation
OR
Secondary care (ICD10)
1. ALL diagnoses of 'Pericardial effusion (noninflammatory)' (noninflammatory) or history of diagnosis during a hospitalization
~~~
<h4>Primary care (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//primary_care/CPRD_pericardial_effusion.csv'>CPRD_pericardial_effusion.csv</a>)</h4>
<table>
<thead>
<tr>
<th>Read code</th>
<th>Read Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left">G50..11</td>
<td align="left">Pericardial effusion - acute</td>
</tr>
<tr>
<td align="left">G533.00</td>
<td align="left">Pericardial effusion - noninflammatory</td>
</tr>
<tr>
<td align="left">G534.00</td>
<td align="left">Pericardial effusion - acute</td>
</tr>
<tr>
<td align="left">G536000</td>
<td align="left">Chronic pericardial effusion</td>
</tr>
<tr>
<td align="left">G536.00</td>
<td align="left">Pericardial effusion</td>
</tr>
</tbody>
</table>
<h4>Secondary care diagnoses (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//secondary_care/ICD_pericardial_effusion.csv'>ICD_pericardial_effusion.csv</a>)</h4>
<table>
<thead>
<tr>
<th>ICD-10 code</th>
<th>ICD-10 Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left">I31.3</td>
<td align="left">Pericardial effusion (noninflammatory)</td>
</tr>
</tbody>
</table>
<h2>Peripheral arterial disease</h2>
<h4>Implementation</h4>
~~~
Use MODIFIED CALIBER 'Peripheral arterial disease' (PAD) phenotyping algorithm:
At the specified date, a patient is considered to have 'Peripheral arterial disease' IF they meet any of the criteria below on or before the specified date.
The earliest date on which the individual meets any of the following criteria on or before the specified date is defined as the first event date:
1. Primary care
1. Peripheral vascular disease diagnosis during a consultation. arterial_gprd: category 7
2. Record of history of PVD during a consultation. The following Read codes from CPRD:
1. Read:14F7.00 Medcode: 106762 Descr:H/O: arterial lower limb ulcer
2. Read:14NB.00 Medcode: 59534 Descr: H/O: Peripheral vascular disease procedure
3. Leg or aortic embolism or thrombosis diagnosis during a consultation. arterial_gprd: category 8
4. 'Peripheral arterial disease' procedures, excluding repair of AAA recording during a consultation. pad_opcs_gprd: category 3
5. Abnormal 'Peripheral arterial disease' (PAD) ultrasound or Doppler study results recorded during a consultation. As per implementation of pad_ud_gprd in CALIBER
6. Abnormal 'Peripheral arterial disease' angiography results recorded during a consultation. As per implementation of pad_angio_gprd in CALIBER
2. Secondary care
1. Primary or secondary diagnosis of Peripheral vascular disease during a hospitalization. arterial_hes: category 7
2. Primary or secondary diagnosis of leg or aortic embolism or thrombosis during a hospitalization. arterial_hes: category 8
3. Recording of 'Peripheral arterial disease' procedures, excluding repair of AAA. pad_procs_opcs: category 3
~~~
<h4>Primary care (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//primary_care/CPRD_peripheral_arterial_disease.csv'>CPRD_peripheral_arterial_disease.csv</a>)</h4>
<table>
<thead>
<tr>
<th>Read code</th>
<th>Read Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left">14F7.00</td>
<td align="left">H/O: arterial lower limb ulcer</td>
</tr>
<tr>
<td align="left">14NB.00</td>
<td align="left">H/O: Peripheral vascular disease procedure</td>
</tr>
<tr>
<td align="left">2G63.00</td>
<td align="left">Ischaemic toe</td>
</tr>
<tr>
<td align="left">A3A0F00</td>
<td align="left">Gas gangrene-foot</td>
</tr>
<tr>
<td align="left">C107.00</td>
<td align="left">Diabetes mellitus with peripheral circulatory disorder</td>
</tr>
<tr>
<td align="left">C107000</td>
<td align="left">Diabetes mellitus, juvenile +peripheral circulatory disorder</td>
</tr>
<tr>
<td align="left">C107100</td>
<td align="left">Diabetes mellitus, adult, + peripheral circulatory disorder</td>
</tr>
<tr>
<td align="left">C107300</td>
<td align="left">IDDM with peripheral circulatory disorder</td>
</tr>
<tr>
<td align="left">C107400</td>
<td align="left">NIDDM with peripheral circulatory disorder</td>
</tr>
<tr>
<td align="left">C107z00</td>
<td align="left">Diabetes mellitus NOS with peripheral circulatory disorder</td>
</tr>
<tr>
<td align="left">C108G00</td>
<td align="left">Insulin dependent diab mell with peripheral angiopathy</td>
</tr>
<tr>
<td align="left">C109F00</td>
<td align="left">Non-insulin-dependent d m with peripheral angiopath</td>
</tr>
<tr>
<td align="left">C109F11</td>
<td align="left">Type II diabetes mellitus with peripheral angiopathy</td>
</tr>
<tr>
<td align="left">C109F12</td>
<td align="left">Type 2 diabetes mellitus with peripheral angiopathy</td>
</tr>
<tr>
<td align="left">C10EG00</td>
<td align="left">Type 1 diabetes mellitus with peripheral angiopathy</td>
</tr>
<tr>
<td align="left">C10FF00</td>
<td align="left">Type 2 diabetes mellitus with peripheral angiopathy</td>
</tr>
<tr>
<td align="left">G700.11</td>
<td align="left">Aorto-iliac disease</td>
</tr>
<tr>
<td align="left">G702.00</td>
<td align="left">Extremity artery atheroma</td>
</tr>
<tr>
<td align="left">G702z00</td>
<td align="left">Extremity artery atheroma NOS</td>
</tr>
<tr>
<td align="left">G73..00</td>
<td align="left">Other peripheral vascular disease</td>
</tr>
<tr>
<td align="left">G73..11</td>
<td align="left">Peripheral ischaemic vascular disease</td>
</tr>
<tr>
<td align="left">G73..12</td>
<td align="left">Ischaemia of legs</td>
</tr>
<tr>
<td align="left">G73..13</td>
<td align="left">Peripheral ischaemia</td>
</tr>
<tr>
<td align="left">G731.00</td>
<td align="left">Thromboangiitis obliterans</td>
</tr>
<tr>
<td align="left">G731000</td>
<td align="left">Buerger's disease</td>
</tr>
<tr>
<td align="left">G731z00</td>
<td align="left">Thromboangiitis obliterans NOS</td>
</tr>
<tr>
<td align="left">G732.00</td>
<td align="left">Peripheral gangrene</td>
</tr>
<tr>
<td align="left">G732000</td>
<td align="left">Gangrene of toe</td>
</tr>
<tr>
<td align="left">G732100</td>
<td align="left">Gangrene of foot</td>
</tr>
<tr>
<td align="left">G733.00</td>
<td align="left">Ischaemic foot</td>
</tr>
<tr>
<td align="left">G73y.00</td>
<td align="left">Other specified peripheral vascular disease</td>
</tr>
<tr>
<td align="left">G73y000</td>
<td align="left">Diabetic peripheral angiopathy</td>
</tr>
<tr>
<td align="left">G73y100</td>
<td align="left">Peripheral angiopathic disease EC NOS</td>
</tr>
<tr>
<td align="left">G73y200</td>
<td align="left">Acrocyanosis</td>
</tr>
<tr>
<td align="left">G73y400</td>
<td align="left">Acroparaesthesia - Schultze's type</td>
</tr>
<tr>
<td align="left">G73y500</td>
<td align="left">Acroparaesthesia - Nothnagel's type</td>
</tr>
<tr>
<td align="left">G73y511</td>
<td align="left">Nothnagel's vasomotor acroparaesthesia</td>
</tr>
<tr>
<td align="left">G73y600</td>
<td align="left">Acroparaesthesia - unspecified</td>
</tr>
<tr>
<td align="left">G73y700</td>
<td align="left">Erythrocyanosis</td>
</tr>
<tr>
<td align="left">G73y800</td>
<td align="left">Erythromelalgia</td>
</tr>
<tr>
<td align="left">G73yz00</td>
<td align="left">Other specified peripheral vascular disease NOS</td>
</tr>
<tr>
<td align="left">G73z.00</td>
<td align="left">Peripheral vascular disease NOS</td>
</tr>
<tr>
<td align="left">G73z000</td>
<td align="left">Intermittent claudication</td>
</tr>
<tr>
<td align="left">G73z011</td>
<td align="left">Claudication</td>
</tr>
<tr>
<td align="left">G73zz00</td>
<td align="left">Peripheral vascular disease NOS</td>
</tr>
<tr>
<td align="left">G740.12</td>
<td align="left">Aortoiliac obstruction</td>
</tr>
<tr>
<td align="left">G742z00</td>
<td align="left">Peripheral arterial embolism and thrombosis NOS</td>
</tr>
<tr>
<td align="left">Gyu7400</td>
<td align="left">[X]Other specified peripheral vascular diseases</td>
</tr>
<tr>
<td align="left">M271.12</td>
<td align="left">Ischaemic leg ulcer</td>
</tr>
<tr>
<td align="left">M271000</td>
<td align="left">Ischaemic ulcer diabetic foot</td>
</tr>
<tr>
<td align="left">M271300</td>
<td align="left">Arterial leg ulcer</td>
</tr>
<tr>
<td align="left">M271400</td>
<td align="left">Mixed venous and arterial leg ulcer</td>
</tr>
<tr>
<td align="left">R054200</td>
<td align="left">[D]Gangrene of toe in diabetic</td>
</tr>
<tr>
<td align="left">R054300</td>
<td align="left">[D]Widespread diabetic foot gangrene</td>
</tr>
<tr>
<td align="left">R055000</td>
<td align="left">[D]Failure of peripheral circulation</td>
</tr>
<tr>
<td align="left">R055011</td>
<td align="left">[D]Peripheral circulatory failure</td>
</tr>
<tr>
<td align="left">G742400</td>
<td align="left">Embolism and thrombosis of the femoral artery</td>
</tr>
<tr>
<td align="left">G742500</td>
<td align="left">Embolism and thrombosis of the popliteal artery</td>
</tr>
<tr>
<td align="left">G742600</td>
<td align="left">Embolism and thrombosis of the anterior tibial artery</td>
</tr>
<tr>
<td align="left">G742700</td>
<td align="left">Embolism and thrombosis of the dorsalis pedis artery</td>
</tr>
<tr>
<td align="left">G742900</td>
<td align="left">Embolism and thrombosis of a leg artery NOS</td>
</tr>
<tr>
<td align="left">G74y000</td>
<td align="left">Embolism and/or thrombosis of the common iliac artery</td>
</tr>
<tr>
<td align="left">G74y100</td>
<td align="left">Embolism and/or thrombosis of the internal iliac artery</td>
</tr>
<tr>
<td align="left">G74y200</td>
<td align="left">Embolism and/or thrombosis of the external iliac artery</td>
</tr>
<tr>
<td align="left">G74y300</td>
<td align="left">Embolism and thrombosis of the iliac artery unspecified</td>
</tr>
<tr>
<td align="left">7A10000</td>
<td align="left">Emerg aortic bypass by anastomosis axillary to femoral art</td>
</tr>
<tr>
<td align="left">7A10100</td>
<td align="left">Bypass aorta by anastomosis axillary to femoral artery NEC</td>
</tr>
<tr>
<td align="left">7A10200</td>
<td align="left">Axillo-bifemoral bypass graft</td>
</tr>
<tr>
<td align="left">7A10300</td>
<td align="left">Axillo-unifemoral PTFE bypass graft</td>
</tr>
<tr>
<td align="left">7A12.00</td>
<td align="left">Other bypass of bifurcation of aorta</td>
</tr>
<tr>
<td align="left">7A12000</td>
<td align="left">Emerg bypass bifurc aorta by anast aorta to femoral artery</td>
</tr>
<tr>
<td align="left">7A12100</td>
<td align="left">Bypass bifurc aorta by anastom aorta to femoral artery NEC</td>
</tr>
<tr>
<td align="left">7A12111</td>
<td align="left">Aorto bifemoral graft</td>
</tr>
<tr>
<td align="left">7A12112</td>
<td align="left">Dacron aortofemoral Y graft</td>
</tr>
<tr>
<td align="left">7A12300</td>
<td align="left">Bypass bifurcation aorta by anastom aorta to iliac artery</td>
</tr>
<tr>
<td align="left">7A12311</td>
<td align="left">Aorto biiliac graft</td>
</tr>
<tr>
<td align="left">7A12312</td>
<td align="left">Dacron aortoiliac Y graft</td>
</tr>
<tr>
<td align="left">7A12y00</td>
<td align="left">Other specified other bypass of bifurcation of aorta</td>
</tr>
<tr>
<td align="left">7A12z00</td>
<td align="left">Other bypass of bifurcation of aorta NOS</td>
</tr>
<tr>
<td align="left">7A19200</td>
<td align="left">Open embolectomy of bifurcation of aorta</td>
</tr>
<tr>
<td align="left">7A41.00</td>
<td align="left">Other bypass of iliac artery</td>
</tr>
<tr>
<td align="left">7A41000</td>
<td align="left">Emerg bypass iliac art by iliac/femoral art anastomosis NEC</td>
</tr>
<tr>
<td align="left">7A41100</td>
<td align="left">Bypass iliac artery by iliac/femoral artery anastomosis NEC</td>
</tr>
<tr>
<td align="left">7A41200</td>
<td align="left">Emerg bypass iliac artery by femoral/femoral art anast NEC</td>
</tr>
<tr>
<td align="left">7A41211</td>
<td align="left">Emergency femoro-femoral prosthetic cross over graft</td>
</tr>
<tr>
<td align="left">7A41300</td>
<td align="left">Bypass iliac artery by femoral/femoral art anastomosis NEC</td>
</tr>
<tr>
<td align="left">7A41311</td>
<td align="left">Femoro-femoral prosthetic cross over graft</td>
</tr>
<tr>
<td align="left">7A41400</td>
<td align="left">Emerg bypass comm iliac art by aorta/com iliac art anast NEC</td>
</tr>
<tr>
<td align="left">7A41600</td>
<td align="left">Emerg bypass leg artery by aorta/com fem art anastomosis NEC</td>
</tr>
<tr>
<td align="left">7A41900</td>
<td align="left">Bypass common iliac artery by aorta/com iliac art anast NEC</td>
</tr>
<tr>
<td align="left">7A41B00</td>
<td align="left">Bypass leg artery by aorta/com femoral art anastomosis NEC</td>
</tr>
<tr>
<td align="left">7A41C00</td>
<td align="left">Bypass leg artery by aorta/deep femoral art anastomosis NEC</td>
</tr>
<tr>
<td align="left">7A41F00</td>
<td align="left">Ilio-femoral prosthetic cross over graft</td>
</tr>
<tr>
<td align="left">7A41y00</td>
<td align="left">Other specified other bypass of iliac artery</td>
</tr>
<tr>
<td align="left">7A41z00</td>
<td align="left">Other bypass of iliac artery NOS</td>
</tr>
<tr>
<td align="left">7A42.00</td>
<td align="left">Reconstruction of iliac artery</td>
</tr>
<tr>
<td align="left">7A42.11</td>
<td align="left">Reconstruction of common iliac artery</td>
</tr>
<tr>
<td align="left">7A42000</td>
<td align="left">Endarterectomy and patch repair of iliac artery</td>
</tr>
<tr>
<td align="left">7A42011</td>
<td align="left">Endarterectomy and patch repair of common iliac artery</td>
</tr>
<tr>
<td align="left">7A42012</td>
<td align="left">Iliac endarterectomy and patch</td>
</tr>
<tr>
<td align="left">7A42100</td>
<td align="left">Endarterectomy of iliac artery NEC</td>
</tr>
<tr>
<td align="left">7A42111</td>
<td align="left">Endarterectomy of common iliac artery NEC</td>
</tr>
<tr>
<td align="left">7A42y00</td>
<td align="left">Other specified reconstruction of iliac artery</td>
</tr>
<tr>
<td align="left">7A42z00</td>
<td align="left">Reconstruction of iliac artery NOS</td>
</tr>
<tr>
<td align="left">7A43.00</td>
<td align="left">Other open operations on iliac artery</td>
</tr>
<tr>
<td align="left">7A43.11</td>
<td align="left">Other open operations on common iliac artery</td>
</tr>
<tr>
<td align="left">7A43000</td>
<td align="left">Repair of iliac artery NEC</td>
</tr>
<tr>
<td align="left">7A43011</td>
<td align="left">Repair of common iliac artery NEC</td>
</tr>
<tr>
<td align="left">7A43100</td>
<td align="left">Open embolectomy of iliac artery</td>
</tr>
<tr>
<td align="left">7A43111</td>
<td align="left">Open embolectomy of common iliac artery</td>
</tr>
<tr>
<td align="left">7A43300</td>
<td align="left">Open insertion of iliac artery stent</td>
</tr>
<tr>
<td align="left">7A44000</td>
<td align="left">Percutaneous transluminal angioplasty of iliac artery</td>
</tr>
<tr>
<td align="left">7A44100</td>
<td align="left">Percutaneous transluminal embolectomy of iliac artery</td>
</tr>
<tr>
<td align="left">7A44300</td>
<td align="left">Insertion of iliac artery stent</td>
</tr>
<tr>
<td align="left">7A44400</td>
<td align="left">Percutaneous transluminal insertion of iliac artery stent</td>
</tr>
<tr>
<td align="left">7A44y00</td>
<td align="left">Other specified transluminal operation on iliac artery</td>
</tr>
<tr>
<td align="left">7A44z00</td>
<td align="left">Transluminal operation on iliac artery NOS</td>
</tr>
<tr>
<td align="left">7A47.00</td>
<td align="left">Other emergency bypass of femoral artery or popliteal artery</td>
</tr>
<tr>
<td align="left">7A47.11</td>
<td align="left">Other emerg bypass femoral or popliteal art by anastomosis</td>
</tr>
<tr>
<td align="left">7A47.13</td>
<td align="left">Other emergency bypass of deep femoral artery</td>
</tr>
<tr>
<td align="left">7A47.14</td>
<td align="left">Other emergency bypass of popliteal artery</td>
</tr>
<tr>
<td align="left">7A47.15</td>
<td align="left">Other emergency bypass of superficial femoral artery</td>
</tr>
<tr>
<td align="left">7A47.16</td>
<td align="left">Other emergency bypass of femoral artery</td>
</tr>
<tr>
<td align="left">7A47000</td>
<td align="left">Emerg bypass femoral art by fem/pop art anast c prosth NEC</td>
</tr>
<tr>
<td align="left">7A47100</td>
<td align="left">Emerg bypass popliteal art by pop/pop art anast c prosth NEC</td>
</tr>
<tr>
<td align="left">7A47200</td>
<td align="left">Emerg bypass femoral art by fem/pop a anast c vein graft NEC</td>
</tr>
<tr>
<td align="left">7A47300</td>
<td align="left">Emerg bypass pop art by pop/pop art anast c vein graft NEC</td>
</tr>
<tr>
<td align="left">7A47400</td>
<td align="left">Emerg bypass femoral art by fem/tib art anast c prosth NEC</td>
</tr>
<tr>
<td align="left">7A47600</td>
<td align="left">Emerg bypass femoral art by fem/tib a anast c vein graft NEC</td>
</tr>
<tr>
<td align="left">7A47700</td>
<td align="left">Emerg bypass pop art by pop/tib art anast c vein graft NEC</td>
</tr>
<tr>
<td align="left">7A47B00</td>
<td align="left">Emerg bypass pop art by pop/peron art anast c vein graft NEC</td>
</tr>
<tr>
<td align="left">7A47C00</td>
<td align="left">Emerg bypass femoral artery by fem/fem art anastomosis NEC</td>
</tr>
<tr>
<td align="left">7A47D00</td>
<td align="left">Emerg bypass popliteal artery by pop/fem art anastomosis NEC</td>
</tr>
<tr>
<td align="left">7A47y00</td>
<td align="left">Other emergency bypass of femoral or popliteal artery OS</td>
</tr>
<tr>
<td align="left">7A47z00</td>
<td align="left">Other emergency bypass of femoral or popliteal artery NOS</td>
</tr>
<tr>
<td align="left">7A48.00</td>
<td align="left">Other bypass of femoral artery or popliteal artery</td>
</tr>
<tr>
<td align="left">7A48.11</td>
<td align="left">Other bypass of femoral or popliteal artery by anastomosis</td>
</tr>
<tr>
<td align="left">7A48.12</td>
<td align="left">Other bypass of common femoral artery</td>
</tr>
<tr>
<td align="left">7A48.14</td>
<td align="left">Other bypass of femoral artery</td>
</tr>
<tr>
<td align="left">7A48.15</td>
<td align="left">Other bypass of popliteal artery</td>
</tr>
<tr>
<td align="left">7A48.16</td>
<td align="left">Other bypass of superficial femoral artery</td>
</tr>
<tr>
<td align="left">7A48000</td>
<td align="left">Bypass femoral artery by fem/pop art anast c prosthesis NEC</td>
</tr>
<tr>
<td align="left">7A48100</td>
<td align="left">Bypass popliteal artery by pop/pop a anast c prosthesis NEC</td>
</tr>
<tr>
<td align="left">7A48200</td>
<td align="left">Bypass femoral artery by fem/pop art anast c vein graft NEC</td>
</tr>
<tr>
<td align="left">7A48300</td>
<td align="left">Bypass popliteal artery by pop/pop a anast c vein graft NEC</td>
</tr>
<tr>
<td align="left">7A48400</td>
<td align="left">Bypass femoral artery by fem/tib art anast c prosthesis NEC</td>
</tr>
<tr>
<td align="left">7A48500</td>
<td align="left">Bypass popliteal artery by pop/tib a anast c prosthesis NEC</td>
</tr>
<tr>
<td align="left">7A48600</td>
<td align="left">Bypass femoral artery by fem/tib art anast c vein graft NEC</td>
</tr>
<tr>
<td align="left">7A48700</td>
<td align="left">Bypass popliteal artery by pop/tib a anast c vein graft NEC</td>
</tr>
<tr>
<td align="left">7A48800</td>
<td align="left">Bypass femoral artery by fem/peron a anast c prosthesis NEC</td>
</tr>
<tr>
<td align="left">7A48A00</td>
<td align="left">Bypass femoral artery by fem/peron a anast c vein graft NEC</td>
</tr>
<tr>
<td align="left">7A48B00</td>
<td align="left">Bypass popliteal art by pop/peron art anast c vein graft NEC</td>
</tr>
<tr>
<td align="left">7A48C00</td>
<td align="left">Bypass femoral artery by femoral/femoral art anastomosis NEC</td>
</tr>
<tr>
<td align="left">7A48D00</td>
<td align="left">Bypass popliteal artery by pop/fem artery anastomosis NEC</td>
</tr>
<tr>
<td align="left">7A48E00</td>
<td align="left">Femoro-femoral prosthetic cross over graft</td>
</tr>
<tr>
<td align="left">7A48y00</td>
<td align="left">Other bypass of femoral artery or popliteal artery OS</td>
</tr>
<tr>
<td align="left">7A48z00</td>
<td align="left">Other bypass of femoral artery or popliteal artery NOS</td>
</tr>
<tr>
<td align="left">7A49.00</td>
<td align="left">Reconstruction of femoral artery or popliteal artery</td>
</tr>
<tr>
<td align="left">7A49.11</td>
<td align="left">Reconstruction of common femoral artery</td>
</tr>
<tr>
<td align="left">7A49.13</td>
<td align="left">Reconstruction of femoral artery</td>
</tr>
<tr>
<td align="left">7A49.14</td>
<td align="left">Reconstruction of popliteal artery</td>
</tr>
<tr>
<td align="left">7A49.15</td>
<td align="left">Reconstruction of superficial femoral artery</td>
</tr>
<tr>
<td align="left">7A49000</td>
<td align="left">Endarterectomy and patch repair of femoral artery</td>
</tr>
<tr>
<td align="left">7A49100</td>
<td align="left">Endarterectomy and patch repair of popliteal artery</td>
</tr>
<tr>
<td align="left">7A49200</td>
<td align="left">Endarterectomy of femoral artery NEC</td>
</tr>
<tr>
<td align="left">7A49300</td>
<td align="left">Endarterectomy of popliteal artery NEC</td>
</tr>
<tr>
<td align="left">7A49400</td>
<td align="left">Profundoplasty femoral artery & patch repair deep fem artery</td>
</tr>
<tr>
<td align="left">7A49500</td>
<td align="left">Profundoplasty and patch repair of popliteal artery</td>
</tr>
<tr>
<td align="left">7A49600</td>
<td align="left">Profundoplasty of femoral artery NEC</td>
</tr>
<tr>
<td align="left">7A49700</td>
<td align="left">Profundoplasty of popliteal artery NEC</td>
</tr>
<tr>
<td align="left">7A49800</td>
<td align="left">Reconstruction of femoral artery with vein graft</td>
</tr>
<tr>
<td align="left">7A49900</td>
<td align="left">Reconstruction of popliteal artery with vein graft</td>
</tr>
<tr>
<td align="left">7A49y00</td>
<td align="left">Reconstruction of femoral or popliteal artery OS</td>
</tr>
<tr>
<td align="left">7A49z00</td>
<td align="left">Reconstruction of femoral or popliteal artery NOS</td>
</tr>
<tr>
<td align="left">7A4A.00</td>
<td align="left">Other open operations on femoral artery or popliteal artery</td>
</tr>
<tr>
<td align="left">7A4A.11</td>
<td align="left">Other open operations on common femoral artery</td>
</tr>
<tr>
<td align="left">7A4A.13</td>
<td align="left">Other open operations on popliteal artery</td>
</tr>
<tr>
<td align="left">7A4A.14</td>
<td align="left">Other open operations on superficial femoral artery</td>
</tr>
<tr>
<td align="left">7A4A000</td>
<td align="left">Repair of femoral artery NEC</td>
</tr>
<tr>
<td align="left">7A4A100</td>
<td align="left">Repair of popliteal artery NEC</td>
</tr>
<tr>
<td align="left">7A4A200</td>
<td align="left">Open embolectomy of femoral artery</td>
</tr>
<tr>
<td align="left">7A4A211</td>
<td align="left">Open thrombectomy of femoral artery</td>
</tr>
<tr>
<td align="left">7A4A212</td>
<td align="left">Open femoral embolectomy</td>
</tr>
<tr>
<td align="left">7A4A300</td>
<td align="left">Open embolectomy popliteal artery</td>
</tr>
<tr>
<td align="left">7A4A311</td>
<td align="left">Open thrombectomy of popliteal artery</td>
</tr>
<tr>
<td align="left">7A4A700</td>
<td align="left">Repair of femoral artery with temporary silastic shunt</td>
</tr>
<tr>
<td align="left">7A4A800</td>
<td align="left">Repair of popliteal artery with temporary silastic shunt</td>
</tr>
<tr>
<td align="left">7A4Ay00</td>
<td align="left">Other open operation on femoral or popliteal artery OS</td>
</tr>
<tr>
<td align="left">7A4B000</td>
<td align="left">Percutaneous transluminal angioplasty of femoral artery</td>
</tr>
<tr>
<td align="left">7A4B100</td>
<td align="left">Percutaneous transluminal angioplasty of popliteal artery</td>
</tr>
<tr>
<td align="left">7A4B200</td>
<td align="left">Percutaneous transluminal embolectomy of femoral artery</td>
</tr>
<tr>
<td align="left">7A4B300</td>
<td align="left">Percutaneous transluminal embolectomy of popliteal artery</td>
</tr>
<tr>
<td align="left">7A4B400</td>
<td align="left">Percutaneous transluminal embolisation of femoral artery</td>
</tr>
<tr>
<td align="left">7A4B500</td>
<td align="left">Percutaneous transluminal embolisation of popliteal artery</td>
</tr>
<tr>
<td align="left">7A4B800</td>
<td align="left">Percut translum thrombolysis femoral graft streptokinase</td>
</tr>
<tr>
<td align="left">7A4B900</td>
<td align="left">Percutaneous transluminal insertion of stent femoral artery</td>
</tr>
<tr>
<td align="left">7A50.00</td>
<td align="left">Revision of reconstruction of artery</td>
</tr>
<tr>
<td align="left">7A50000</td>
<td align="left">Revision of reconstruction involving aorta</td>
</tr>
<tr>
<td align="left">7A50100</td>
<td align="left">Revision of reconstruction involving iliac artery</td>
</tr>
<tr>
<td align="left">7A50200</td>
<td align="left">Revision of reconstruction involving femoral artery</td>
</tr>
<tr>
<td align="left">7A50300</td>
<td align="left">Revision of reconstruction of popliteal artery</td>
</tr>
</tbody>
</table>
<h4>Secondary care diagnoses (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//secondary_care/ICD_peripheral_arterial_disease.csv'>ICD_peripheral_arterial_disease.csv</a>)</h4>
<table>
<thead>
<tr>
<th>ICD-10 code</th>
<th>ICD-10 Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left">I731</td>
<td align="left">Thromboangiitis obliterans [Buerger]</td>
</tr>
<tr>
<td align="left">I738</td>
<td align="left">Other specified peripheral vascular diseases</td>
</tr>
<tr>
<td align="left">I739</td>
<td align="left">Peripheral vascular disease, unspecified</td>
</tr>
<tr>
<td align="left">I743</td>
<td align="left">Embolism and thrombosis of arteries of lower extremities</td>
</tr>
<tr>
<td align="left">I744</td>
<td align="left">Embolism and thrombosis of arteries of extremities, unspecified</td>
</tr>
<tr>
<td align="left">I745</td>
<td align="left">Embolism and thrombosis of iliac artery</td>
</tr>
</tbody>
</table>
<h4>Secondary care procedures (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//secondary_care/OPCS_peripheral_arterial_disease.csv'>OPCS_peripheral_arterial_disease.csv</a>)</h4>
<table>
<thead>
<tr>
<th>OPCS-4 code</th>
<th>OPCS-4 Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left">L50</td>
<td align="left">Other emergency bypass of iliac artery</td>
</tr>
<tr>
<td align="left">L50.1</td>
<td align="left">Emergency bypass of common iliac artery by anastomosis of aorta to common iliac artery NEC</td>
</tr>
<tr>
<td align="left">L50.2</td>
<td align="left">Emergency bypass of iliac artery by anastomosis of aorta to external iliac artery NEC</td>
</tr>
<tr>
<td align="left">L50.3</td>
<td align="left">Emergency bypass of artery of leg by anastomosis of aorta to common femoral artery NEC</td>
</tr>
<tr>
<td align="left">L50.4</td>
<td align="left">Emergency bypass of artery of leg by anastomosis of aorta to deep femoral artery NEC</td>
</tr>
<tr>
<td align="left">L50.5</td>
<td align="left">Emergency bypass of iliac artery by anastomosis of iliac artery to iliac artery NEC</td>
</tr>
<tr>
<td align="left">L50.6</td>
<td align="left">Emergency bypass of artery of leg by anastomosis of iliac artery to femoral artery NEC</td>
</tr>
<tr>
<td align="left">L50.8</td>
<td align="left">Other specified other emergency bypass of iliac artery</td>
</tr>
<tr>
<td align="left">L50.9</td>
<td align="left">Unspecified other emergency bypass of iliac artery</td>
</tr>
<tr>
<td align="left">L51</td>
<td align="left">Other bypass of iliac artery</td>
</tr>
<tr>
<td align="left">L51.1</td>
<td align="left">Bypass of common iliac artery by anastomosis of aorta to common iliac artery NEC</td>
</tr>
<tr>
<td align="left">L51.2</td>
<td align="left">Bypass of iliac artery by anastomosis of aorta to external iliac artery NEC</td>
</tr>
<tr>
<td align="left">L51.3</td>
<td align="left">Bypass of artery of leg by anastomosis of aorta to common femoral artery NEC</td>
</tr>
<tr>
<td align="left">L51.4</td>
<td align="left">Bypass of artery of leg by anastomosis of aorta to deep femoral artery NEC</td>
</tr>
<tr>
<td align="left">L51.5</td>
<td align="left">Bypass of iliac artery by anastomosis of iliac artery to iliac artery NEC</td>
</tr>
<tr>
<td align="left">L51.6</td>
<td align="left">Bypass of artery of leg by anastomosis of iliac artery to femoral artery NEC</td>
</tr>
<tr>
<td align="left">L51.8</td>
<td align="left">Other specified other bypass of iliac artery</td>
</tr>
<tr>
<td align="left">L51.9</td>
<td align="left">Unspecified other bypass of iliac artery</td>
</tr>
<tr>
<td align="left">L52</td>
<td align="left">Reconstruction of iliac artery</td>
</tr>
<tr>
<td align="left">L52.1</td>
<td align="left">Endarterectomy of iliac artery and patch repair of iliac artery</td>
</tr>
<tr>
<td align="left">L52.2</td>
<td align="left">Endarterectomy of iliac artery NEC</td>
</tr>
<tr>
<td align="left">L52.8</td>
<td align="left">Other specified reconstruction of iliac artery</td>
</tr>
<tr>
<td align="left">L52.9</td>
<td align="left">Unspecified reconstruction of iliac artery</td>
</tr>
<tr>
<td align="left">L53</td>
<td align="left">Other open operations on iliac artery</td>
</tr>
<tr>
<td align="left">L53.1</td>
<td align="left">Repair of iliac artery NEC</td>
</tr>
<tr>
<td align="left">L53.2</td>
<td align="left">Open embolectomy of iliac artery</td>
</tr>
<tr>
<td align="left">L54.1</td>
<td align="left">Percutaneous transluminal angioplasty of iliac artery</td>
</tr>
<tr>
<td align="left">L54.2</td>
<td align="left">Percutaneous transluminal embolectomy of iliac artery</td>
</tr>
<tr>
<td align="left">L54.4</td>
<td align="left">Percutaneous transluminal insertion of stent into iliac artery</td>
</tr>
<tr>
<td align="left">L54.8</td>
<td align="left">Other specified transluminal operations on iliac artery</td>
</tr>
<tr>
<td align="left">L54.9</td>
<td align="left">Unspecified transluminal operations on iliac artery</td>
</tr>
<tr>
<td align="left">L58</td>
<td align="left">Other emergency bypass of femoral artery</td>
</tr>
<tr>
<td align="left">L58.1</td>
<td align="left">Emergency bypass of femoral artery by anastomosis of femoral artery to femoral artery NEC</td>
</tr>
<tr>
<td align="left">L58.2</td>
<td align="left">Emergency bypass of femoral artery by anastomosis of femoral artery to popliteal artery using prosthesis NEC</td>
</tr>
<tr>
<td align="left">L58.3</td>
<td align="left">Emergency bypass of femoral artery by anastomosis of femoral artery to popliteal artery using vein graft NEC</td>
</tr>
<tr>
<td align="left">L58.4</td>
<td align="left">Emergency bypass of femoral artery by anastomosis of femoral artery to tibial artery using prosthesis NEC</td>
</tr>
<tr>
<td align="left">L58.5</td>
<td align="left">Emergency bypass of femoral artery by anastomosis of femoral artery to tibial artery using vein graft NEC</td>
</tr>
<tr>
<td align="left">L58.6</td>
<td align="left">Emergency bypass of femoral artery by anastomosis of femoral artery to peroneal artery using prosthesis NEC</td>
</tr>
<tr>
<td align="left">L58.7</td>
<td align="left">Emergency bypass of femoral artery by anastomosis of femoral artery to peroneal artery using vein graft NEC</td>
</tr>
<tr>
<td align="left">L58.8</td>
<td align="left">Other specified other emergency bypass of femoral artery</td>
</tr>
<tr>
<td align="left">L58.9</td>
<td align="left">Unspecified other emergency bypass of femoral artery</td>
</tr>
<tr>
<td align="left">L59</td>
<td align="left">Other bypass of femoral artery</td>
</tr>
<tr>
<td align="left">L59.1</td>
<td align="left">Bypass of femoral artery by anastomosis of femoral artery to femoral artery NEC</td>
</tr>
<tr>
<td align="left">L59.2</td>
<td align="left">Bypass of femoral artery by anastomosis of femoral artery to popliteal artery using prosthesis NEC</td>
</tr>
<tr>
<td align="left">L59.3</td>
<td align="left">Bypass of femoral artery by anastomosis of femoral artery to popliteal artery using vein graft NEC</td>
</tr>
<tr>
<td align="left">L59.4</td>
<td align="left">Bypass of femoral artery by anastomosis of femoral artery to tibial artery using prosthesis NEC</td>
</tr>
<tr>
<td align="left">L59.5</td>
<td align="left">Bypass of femoral artery by anastomosis of femoral artery to tibial artery using vein graft NEC</td>
</tr>
<tr>
<td align="left">L59.6</td>
<td align="left">Bypass of femoral artery by anastomosis of femoral artery to peroneal artery using prosthesis NEC</td>
</tr>
<tr>
<td align="left">L59.7</td>
<td align="left">Bypass of femoral artery by anastomosis of femoral artery to peroneal artery using vein graft NEC</td>
</tr>
<tr>
<td align="left">L59.8</td>
<td align="left">Other specified other bypass of femoral artery</td>
</tr>
<tr>
<td align="left">L59.9</td>
<td align="left">Unspecified other bypass of femoral artery</td>
</tr>
<tr>
<td align="left">L60</td>
<td align="left">Reconstruction of femoral artery</td>
</tr>
<tr>
<td align="left">L60.1</td>
<td align="left">Endarterectomy of femoral artery and patch repair of femoral artery</td>
</tr>
<tr>
<td align="left">L60.2</td>
<td align="left">Endarterectomy of femoral artery NEC</td>
</tr>
<tr>
<td align="left">L60.3</td>
<td align="left">Profundoplasty of femoral artery and patch repair of deep femoral artery</td>
</tr>
<tr>
<td align="left">L60.4</td>
<td align="left">Profundoplasty of femoral artery NEC</td>
</tr>
<tr>
<td align="left">L60.8</td>
<td align="left">Other specified reconstruction of femoral artery</td>
</tr>
<tr>
<td align="left">L60.9</td>
<td align="left">Unspecified reconstruction of femoral artery</td>
</tr>
<tr>
<td align="left">L62</td>
<td align="left">Other open operations on femoral artery</td>
</tr>
<tr>
<td align="left">L62.1</td>
<td align="left">Repair of femoral artery NEC</td>
</tr>
<tr>
<td align="left">L62.2</td>
<td align="left">Open embolectomy of femoral artery</td>
</tr>
<tr>
<td align="left">L62.8</td>
<td align="left">Other specified other open operations on femoral artery</td>
</tr>
<tr>
<td align="left">L62.9</td>
<td align="left">Unspecified other open operations on femoral artery</td>
</tr>
<tr>
<td align="left">L63.1</td>
<td align="left">Percutaneous transluminal angioplasty of femoral artery</td>
</tr>
<tr>
<td align="left">L63.2</td>
<td align="left">Percutaneous transluminal embolectomy of femoral artery</td>
</tr>
<tr>
<td align="left">L63.3</td>
<td align="left">Percutaneous transluminal embolisation of femoral artery</td>
</tr>
<tr>
<td align="left">L63.5</td>
<td align="left">Percutaneous transluminal insertion of stent into femoral artery</td>
</tr>
<tr>
<td align="left">L65</td>
<td align="left">Revision of reconstruction of artery</td>
</tr>
<tr>
<td align="left">L65.1</td>
<td align="left">Revision of reconstruction involving aorta</td>
</tr>
<tr>
<td align="left">L65.2</td>
<td align="left">Revision of reconstruction involving iliac artery</td>
</tr>
<tr>
<td align="left">L65.3</td>
<td align="left">Revision of reconstruction involving femoral artery</td>
</tr>
</tbody>
</table>
<h2>Peripheral neuropathies (excluding cranial nerve and carpal tunnel syndromes)</h2>
<h4>Implementation</h4>
~~~
At the specified date, a patient is defined as having had 'Peripheral neuropathies (excluding cranial nerve and carpal tunnel syndromes)' (excluding cranial nerve and carpal tunnel syndromes) IF they meet the criteria for any of the following on or before the specified date. The earliest date on which the individual meets any of the following criteria on or before the specified date is defined as the first event date:
Primary care
1. 'Peripheral neuropathies (excluding cranial nerve and carpal tunnel syndromes)' (excluding cranial nerve and carpal tunnel syndromes) diagnosis or history of diagnosis during a consultation
OR
Secondary care
1. ALL diagnoses of 'Peripheral neuropathies (excluding cranial nerve and carpal tunnel syndromes)' (excluding cranial nerve and carpal tunnel syndromes) or history of diagnosis during a hospitalization
~~~
<h4>Primary care (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//primary_care/CPRD_periph_neuro.csv'>CPRD_periph_neuro.csv</a>)</h4>
<table>
<thead>
<tr>
<th>Read code</th>
<th>Read Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left">A531300</td>
<td align="left">Postherpetic polyneuropathy</td>
</tr>
<tr>
<td align="left">A72x100</td>
<td align="left">Mumps polyneuropathy</td>
</tr>
<tr>
<td align="left">C106.12</td>
<td align="left">Diabetes mellitus with neuropathy</td>
</tr>
<tr>
<td align="left">C106.13</td>
<td align="left">Diabetes mellitus with polyneuropathy</td>
</tr>
<tr>
<td align="left">C108B00</td>
<td align="left">Insulin dependent diabetes mellitus with mononeuropathy</td>
</tr>
<tr>
<td align="left">C108B11</td>
<td align="left">Type I diabetes mellitus with mononeuropathy</td>
</tr>
<tr>
<td align="left">C108C00</td>
<td align="left">Insulin dependent diabetes mellitus with polyneuropathy</td>
</tr>
<tr>
<td align="left">C108J00</td>
<td align="left">Insulin dependent diab mell with neuropathic arthropathy</td>
</tr>
<tr>
<td align="left">C108J11</td>
<td align="left">Type I diabetes mellitus with neuropathic arthropathy</td>
</tr>
<tr>
<td align="left">C108J12</td>
<td align="left">Type 1 diabetes mellitus with neuropathic arthropathy</td>
</tr>
<tr>
<td align="left">C109A00</td>
<td align="left">Non-insulin dependent diabetes mellitus with mononeuropathy</td>
</tr>
<tr>
<td align="left">C109A11</td>
<td align="left">Type II diabetes mellitus with mononeuropathy</td>
</tr>
<tr>
<td align="left">C109B00</td>
<td align="left">Non-insulin dependent diabetes mellitus with polyneuropathy</td>
</tr>
<tr>
<td align="left">C109B11</td>
<td align="left">Type II diabetes mellitus with polyneuropathy</td>
</tr>
<tr>
<td align="left">C109B12</td>
<td align="left">Type 2 diabetes mellitus with polyneuropathy</td>
</tr>
<tr>
<td align="left">C109H00</td>
<td align="left">Non-insulin dependent d m with neuropathic arthropathy</td>
</tr>
<tr>
<td align="left">C109H11</td>
<td align="left">Type II diabetes mellitus with neuropathic arthropathy</td>
</tr>
<tr>
<td align="left">C109H12</td>
<td align="left">Type 2 diabetes mellitus with neuropathic arthropathy</td>
</tr>
<tr>
<td align="left">C10EB00</td>
<td align="left">Type 1 diabetes mellitus with mononeuropathy</td>
</tr>
<tr>
<td align="left">C10EC00</td>
<td align="left">Type 1 diabetes mellitus with polyneuropathy</td>
</tr>
<tr>
<td align="left">C10EC11</td>
<td align="left">Type I diabetes mellitus with polyneuropathy</td>
</tr>
<tr>
<td align="left">C10EC12</td>
<td align="left">Insulin dependent diabetes mellitus with polyneuropathy</td>
</tr>
<tr>
<td align="left">C10EJ00</td>
<td align="left">Type 1 diabetes mellitus with neuropathic arthropathy</td>
</tr>
<tr>
<td align="left">C10FA00</td>
<td align="left">Type 2 diabetes mellitus with mononeuropathy</td>
</tr>
<tr>
<td align="left">C10FA11</td>
<td align="left">Type II diabetes mellitus with mononeuropathy</td>
</tr>
<tr>
<td align="left">C10FB00</td>
<td align="left">Type 2 diabetes mellitus with polyneuropathy</td>
</tr>
<tr>
<td align="left">C10FB11</td>
<td align="left">Type II diabetes mellitus with polyneuropathy</td>
</tr>
<tr>
<td align="left">C10FH00</td>
<td align="left">Type 2 diabetes mellitus with neuropathic arthropathy</td>
</tr>
<tr>
<td align="left">C10FH11</td>
<td align="left">Type II diabetes mellitus with neuropathic arthropathy</td>
</tr>
<tr>
<td align="left">C34y400</td>
<td align="left">Gouty neuritis</td>
</tr>
<tr>
<td align="left">C373200</td>
<td align="left">Familial neuropathic amyloid</td>
</tr>
<tr>
<td align="left">C373K13</td>
<td align="left">Familial amyloid polyneuropathy type III</td>
</tr>
<tr>
<td align="left">E011100</td>
<td align="left">Korsakov's alcoholic psychosis with peripheral neuritis</td>
</tr>
<tr>
<td align="left">F341000</td>
<td align="left">Median nerve neuritis</td>
</tr>
<tr>
<td align="left">F341100</td>
<td align="left">Median nerve compression in forearm</td>
</tr>
<tr>
<td align="left">F341.00</td>
<td align="left">Other median nerve lesions</td>
</tr>
<tr>
<td align="left">F341z00</td>
<td align="left">Median nerve lesions NOS</td>
</tr>
<tr>
<td align="left">F342000</td>
<td align="left">Cubital tunnel syndrome</td>
</tr>
<tr>
<td align="left">F342100</td>
<td align="left">Tardy ulnar nerve palsy</td>
</tr>
<tr>
<td align="left">F342200</td>
<td align="left">Canal of Guyon compression</td>
</tr>
<tr>
<td align="left">F342300</td>
<td align="left">Ulnar nerve entrapment</td>
</tr>
<tr>
<td align="left">F342400</td>
<td align="left">Ulnar neuropathy</td>
</tr>
<tr>
<td align="left">F342.00</td>
<td align="left">Ulnar nerve lesions</td>
</tr>
<tr>
<td align="left">F342.11</td>
<td align="left">Neuritis ulnar nerve</td>
</tr>
<tr>
<td align="left">F342z00</td>
<td align="left">Ulnar nerve lesion NOS</td>
</tr>
<tr>
<td align="left">F343000</td>
<td align="left">Acute radial nerve palsy</td>
</tr>
<tr>
<td align="left">F343100</td>
<td align="left">Sensory branch of radial nerve lesion</td>
</tr>
<tr>
<td align="left">F343200</td>
<td align="left">Posterior interosseous nerve lesion</td>
</tr>
<tr>
<td align="left">F343.00</td>
<td align="left">Radial nerve lesions</td>
</tr>
<tr>
<td align="left">F343z00</td>
<td align="left">Radial nerve lesion NOS</td>
</tr>
<tr>
<td align="left">F344.00</td>
<td align="left">Causalgia</td>
</tr>
<tr>
<td align="left">F345000</td>
<td align="left">Diabetic mononeuritis multiplex</td>
</tr>
<tr>
<td align="left">F345.00</td>
<td align="left">Mononeuritis multiplex</td>
</tr>
<tr>
<td align="left">F346.00</td>
<td align="left">Median nerve entrapment</td>
</tr>
<tr>
<td align="left">F34..00</td>
<td align="left">Mononeuritis of upper limb and mononeuritis multiplex</td>
</tr>
<tr>
<td align="left">F34y.00</td>
<td align="left">Other upper limb mononeuritis</td>
</tr>
<tr>
<td align="left">F34z.00</td>
<td align="left">Mononeuritis upper limb NOS</td>
</tr>
<tr>
<td align="left">F350.00</td>
<td align="left">Sciatic nerve lesion</td>
</tr>
<tr>
<td align="left">F351.00</td>
<td align="left">Meralgia paraesthetica</td>
</tr>
<tr>
<td align="left">F352.00</td>
<td align="left">Femoral nerve lesions</td>
</tr>
<tr>
<td align="left">F353.00</td>
<td align="left">Common peroneal nerve lesion</td>
</tr>
<tr>
<td align="left">F353.11</td>
<td align="left">Lateral popliteal nerve lesion</td>
</tr>
<tr>
<td align="left">F354.00</td>
<td align="left">Tibial nerve lesion</td>
</tr>
<tr>
<td align="left">F354.11</td>
<td align="left">Medial popliteal nerve lesion</td>
</tr>
<tr>
<td align="left">F355.00</td>
<td align="left">Tarsal tunnel syndrome</td>
</tr>
<tr>
<td align="left">F356000</td>
<td align="left">Morton's metatarsalgia</td>
</tr>
<tr>
<td align="left">F356100</td>
<td align="left">Morton's neuralgia</td>
</tr>
<tr>
<td align="left">F356.00</td>
<td align="left">Plantar nerve lesion</td>
</tr>
<tr>
<td align="left">F356z00</td>
<td align="left">Plantar nerve lesion NOS</td>
</tr>
<tr>
<td align="left">F357.00</td>
<td align="left">Superficial peroneal nerve lesion</td>
</tr>
<tr>
<td align="left">F358.00</td>
<td align="left">Deep peroneal nerve lesion</td>
</tr>
<tr>
<td align="left">F35..00</td>
<td align="left">Mononeuritis lower limb</td>
</tr>
<tr>
<td align="left">F35x.00</td>
<td align="left">Other mononeuritis lower limb</td>
</tr>
<tr>
<td align="left">F35y.00</td>
<td align="left">Unspecified mononeuritis lower limb</td>
</tr>
<tr>
<td align="left">F35z000</td>
<td align="left">Diabetic mononeuritis NOS</td>
</tr>
<tr>
<td align="left">F35z.00</td>
<td align="left">Mononeuritis of unspecified site NOS</td>
</tr>
<tr>
<td align="left">F35z.11</td>
<td align="left">Peripheral neuropathy - hereditary or idiopathic</td>
</tr>
<tr>
<td align="left">F360000</td>
<td align="left">Dejerine-Sottas disease</td>
</tr>
<tr>
<td align="left">F360.00</td>
<td align="left">Hereditary peripheral neuropathy</td>
</tr>
<tr>
<td align="left">F360z00</td>
<td align="left">Hereditary peripheral neuropathy NOS</td>
</tr>
<tr>
<td align="left">F361000</td>
<td align="left">Charcot-Marie-Tooth disease</td>
</tr>
<tr>
<td align="left">F361011</td>
<td align="left">Charcot's atrophy</td>
</tr>
<tr>
<td align="left">F361012</td>
<td align="left">Charcot-Marie-Tooth syndrome</td>
</tr>
<tr>
<td align="left">F361.00</td>
<td align="left">Peroneal muscular atrophy</td>
</tr>
<tr>
<td align="left">F361z00</td>
<td align="left">Peroneal muscular atrophy NOS</td>
</tr>
<tr>
<td align="left">F362.00</td>
<td align="left">Hereditary sensory neuropathy</td>
</tr>
<tr>
<td align="left">F363.00</td>
<td align="left">Refsum's disease</td>
</tr>
<tr>
<td align="left">F364.00</td>
<td align="left">Idiopathic progressive polyneuropathy</td>
</tr>
<tr>
<td align="left">F365.00</td>
<td align="left">Neuropathy in association with hereditary ataxia</td>
</tr>
<tr>
<td align="left">F366.00</td>
<td align="left">Polyneuropathy</td>
</tr>
<tr>
<td align="left">F367.00</td>
<td align="left">Peripheral neuropathy</td>
</tr>
<tr>
<td align="left">F368000</td>
<td align="left">Hereditary motor and sensory neuropathy type I</td>
</tr>
<tr>
<td align="left">F368100</td>
<td align="left">Hereditary motor and sensory neuropathy type II</td>
</tr>
<tr>
<td align="left">F368200</td>
<td align="left">Hereditary motor and sensory neuropathy type III</td>
</tr>
<tr>
<td align="left">F368.00</td>
<td align="left">Hereditary motor and sensory neuropathy</td>
</tr>
<tr>
<td align="left">F36..00</td>
<td align="left">Hereditary and idiopathic peripheral neuropathy</td>
</tr>
<tr>
<td align="left">F36y.00</td>
<td align="left">Other idiopathic peripheral neuropathy</td>
</tr>
<tr>
<td align="left">F36yz00</td>
<td align="left">Other idiopathic peripheral neuropathy NOS</td>
</tr>
<tr>
<td align="left">F36z.00</td>
<td align="left">Hereditary or idiopathic peripheral neuropathy NOS</td>
</tr>
<tr>
<td align="left">F370000</td>
<td align="left">Guillain-Barre syndrome</td>
</tr>
<tr>
<td align="left">F370100</td>
<td align="left">Postinfectious polyneuritis</td>
</tr>
<tr>
<td align="left">F370200</td>
<td align="left">Miller-Fisher syndrome</td>
</tr>
<tr>
<td align="left">F370.00</td>
<td align="left">Acute infective polyneuritis</td>
</tr>
<tr>
<td align="left">F370z00</td>
<td align="left">Acute infective polyneuritis NOS</td>
</tr>
<tr>
<td align="left">F371000</td>
<td align="left">Polyneuropathy in disseminated lupus erythematosus</td>
</tr>
<tr>
<td align="left">F371100</td>
<td align="left">Polyneuropathy in polyarteritis nodosa</td>
</tr>
<tr>
<td align="left">F371200</td>
<td align="left">Polyneuropathy in rheumatoid arthritis</td>
</tr>
<tr>
<td align="left">F371.00</td>
<td align="left">Polyneuropathy in collagen vascular disease</td>
</tr>
<tr>
<td align="left">F371z00</td>
<td align="left">Polyneuropathy in collagen vascular disease NOS</td>
</tr>
<tr>
<td align="left">F372000</td>
<td align="left">Acute painful diabetic neuropathy</td>
</tr>
<tr>
<td align="left">F372100</td>
<td align="left">Chronic painful diabetic neuropathy</td>
</tr>
<tr>
<td align="left">F372200</td>
<td align="left">Asymptomatic diabetic neuropathy</td>
</tr>
<tr>
<td align="left">F372.00</td>
<td align="left">Polyneuropathy in diabetes</td>
</tr>
<tr>
<td align="left">F372.11</td>
<td align="left">Diabetic polyneuropathy</td>
</tr>
<tr>
<td align="left">F372.12</td>
<td align="left">Diabetic neuropathy</td>
</tr>
<tr>
<td align="left">F373.00</td>
<td align="left">Polyneuropathy in malignant disease</td>
</tr>
<tr>
<td align="left">F374000</td>
<td align="left">Polyneuropathy in amyloidosis</td>
</tr>
<tr>
<td align="left">F374100</td>
<td align="left">Polyneuropathy in beriberi</td>
</tr>
<tr>
<td align="left">F374200</td>
<td align="left">Polyneuropathy in vitamin B deficiency</td>
</tr>
<tr>
<td align="left">F374300</td>
<td align="left">Polyneuropathy in diphtheria</td>
</tr>
<tr>
<td align="left">F374400</td>
<td align="left">Polyneuropathy in herpes zoster</td>
</tr>
<tr>
<td align="left">F374500</td>
<td align="left">Polyneuropathy in hypoglycaemia</td>
</tr>
<tr>
<td align="left">F374600</td>
<td align="left">Polyneuropathy in mumps</td>
</tr>
<tr>
<td align="left">F374800</td>
<td align="left">Polyneuropathy in porphyria</td>
</tr>
<tr>
<td align="left">F374900</td>
<td align="left">Polyneuropathy in sarcoidosis</td>
</tr>
<tr>
<td align="left">F374A00</td>
<td align="left">Polyneuropathy in uraemia</td>
</tr>
<tr>
<td align="left">F374.00</td>
<td align="left">Polyneuropathy in disease EC</td>
</tr>
<tr>
<td align="left">F374z00</td>
<td align="left">Polyneuropathy in disease NOS</td>
</tr>
<tr>
<td align="left">F375.00</td>
<td align="left">Alcoholic polyneuropathy</td>
</tr>
<tr>
<td align="left">F376.00</td>
<td align="left">Polyneuropathy due to drugs</td>
</tr>
<tr>
<td align="left">F377.00</td>
<td align="left">Other toxic agent polyneuropathy</td>
</tr>
<tr>
<td align="left">F378.00</td>
<td align="left">Intercostal neuropathy</td>
</tr>
<tr>
<td align="left">F37..00</td>
<td align="left">Inflammatory and toxic neuropathy</td>
</tr>
<tr>
<td align="left">F37..11</td>
<td align="left">Toxic neuropathy</td>
</tr>
<tr>
<td align="left">F37X.00</td>
<td align="left">Inflammatory polyneuropathy, unspecified</td>
</tr>
<tr>
<td align="left">F37y000</td>
<td align="left">Serum neuropathy</td>
</tr>
<tr>
<td align="left">F37y100</td>
<td align="left">Axonal sensorimotor neuropathy</td>
</tr>
<tr>
<td align="left">F37y.00</td>
<td align="left">Other toxic or inflammatory neuropathy</td>
</tr>
<tr>
<td align="left">F37z.00</td>
<td align="left">Toxic or inflammatory neuropathy NOS</td>
</tr>
<tr>
<td align="left">F37z.11</td>
<td align="left">Polyneuropathy unspecified</td>
</tr>
<tr>
<td align="left">F3y0.00</td>
<td align="left">Diabetic mononeuropathy</td>
</tr>
<tr>
<td align="left">F3y..00</td>
<td align="left">Other specified disorders of peripheral nervous system</td>
</tr>
<tr>
<td align="left">F3z..00</td>
<td align="left">Peripheral nervous system disorder NOS</td>
</tr>
<tr>
<td align="left">Fyu1300</td>
<td align="left">[X]Paraneoplastic neuromyopathy and neuropathy</td>
</tr>
<tr>
<td align="left">Fyu6900</td>
<td align="left">[X]Other lesions of median nerve</td>
</tr>
<tr>
<td align="left">Fyu6A00</td>
<td align="left">[X]Other mononeuropathies of upper limb</td>
</tr>
<tr>
<td align="left">Fyu6B00</td>
<td align="left">[X]Other mononeuropathies of lower limb</td>
</tr>
<tr>
<td align="left">Fyu6C00</td>
<td align="left">[X]Other specified mononeuropathies</td>
</tr>
<tr>
<td align="left">Fyu6D00</td>
<td align="left">[X]Other mononeuropathies in diseases classified elsewhere</td>
</tr>
<tr>
<td align="left">Fyu7000</td>
<td align="left">[X]Other hereditary and idiopathic neuropathies</td>
</tr>
<tr>
<td align="left">Fyu7100</td>
<td align="left">[X]Other inflammatory polyneuropathies</td>
</tr>
<tr>
<td align="left">Fyu7200</td>
<td align="left">[X]Other specified polyneuropathies</td>
</tr>
<tr>
<td align="left">Fyu7500</td>
<td align="left">[X]Polyneuropathy/other endocrine+metabolic diseases CE</td>
</tr>
<tr>
<td align="left">Fyu7800</td>
<td align="left">[X]Polyneuropathy/other musculoskeletal disorders CE</td>
</tr>
<tr>
<td align="left">Fyu7B00</td>
<td align="left">[X]Inflammatory polyneuropathy, unspecified</td>
</tr>
<tr>
<td align="left">Fyu7C00</td>
<td align="left">[X] Polyneuropathy, unspecified</td>
</tr>
<tr>
<td align="left">Fyu7.00</td>
<td align="left">[X]Polyneuropathies & other disord of peripheral nerv syst</td>
</tr>
<tr>
<td align="left">M271100</td>
<td align="left">Neuropathic diabetic ulcer - foot</td>
</tr>
<tr>
<td align="left">M271700</td>
<td align="left">Neuropathic foot ulcer</td>
</tr>
<tr>
<td align="left">N035.00</td>
<td align="left">Neuropathic arthropathy</td>
</tr>
<tr>
<td align="left">N035.12</td>
<td align="left">Neuropathic arthritis</td>
</tr>
<tr>
<td align="left">N11y200</td>
<td align="left">Neuropathic spondylopathy</td>
</tr>
<tr>
<td align="left">N134.14</td>
<td align="left">Ulnar neuritis</td>
</tr>
<tr>
<td align="left">SD72200</td>
<td align="left">Neuropathic foot blister</td>
</tr>
</tbody>
</table>
<h4>Secondary care diagnoses (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//secondary_care/ICD_periph_neuro.csv'>ICD_periph_neuro.csv</a>)</h4>
<table>
<thead>
<tr>
<th>ICD-10 code</th>
<th>ICD-10 Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left">G56.1</td>
<td align="left">Other lesions of median nerve</td>
</tr>
<tr>
<td align="left">G56.2</td>
<td align="left">Lesion of ulnar nerve</td>
</tr>
<tr>
<td align="left">G56.3</td>
<td align="left">Lesion of radial nerve</td>
</tr>
<tr>
<td align="left">G56.4</td>
<td align="left">Causalgia</td>
</tr>
<tr>
<td align="left">G56.8</td>
<td align="left">Other mononeuropathies of upper limb</td>
</tr>
<tr>
<td align="left">G56.9</td>
<td align="left">Mononeuropathy of upper limb, unspecified</td>
</tr>
<tr>
<td align="left">G57</td>
<td align="left">Mononeuropathies of lower limb</td>
</tr>
<tr>
<td align="left">G58</td>
<td align="left">Other mononeuropathies</td>
</tr>
<tr>
<td align="left">G59</td>
<td align="left">Mononeuropathy in diseases classified elsewhere</td>
</tr>
<tr>
<td align="left">G60</td>
<td align="left">Hereditary and idiopathic neuropathy</td>
</tr>
<tr>
<td align="left">G61</td>
<td align="left">Inflammatory polyneuropathy</td>
</tr>
<tr>
<td align="left">G62</td>
<td align="left">Other polyneuropathies</td>
</tr>
<tr>
<td align="left">G63</td>
<td align="left">Polyneuropathy in diseases classified elsewhere</td>
</tr>
<tr>
<td align="left">G64</td>
<td align="left">Other disorders of peripheral nervous system</td>
</tr>
<tr>
<td align="left">M14.6</td>
<td align="left">Neuropathic arthropathy</td>
</tr>
<tr>
<td align="left">M49.4</td>
<td align="left">Neuropathic spondylopathy</td>
</tr>
<tr>
<td align="left">E85.1</td>
<td align="left">Neuropathic heredofamilial amyloidosis</td>
</tr>
</tbody>
</table>
<h2>Peritonitis</h2>
<h4>Implementation</h4>
~~~
At the specified date, a patient is defined as having had 'Peritonitis' IF they meet the criteria for any of the following on or before the specified date. The earliest date on which the individual meets any of the following criteria on or before the specified date is defined as the first event date:
Primary care
1. 'Peritonitis' diagnosis or history of diagnosis or procedure during a consultation
OR
Secondary care
1. ALL diagnoses of 'Peritonitis' or history of diagnosis during a hospitalization
OR
Secondary care (OPCS4)
1. ALL procedures for 'Peritonitis' during a hospitalization
~~~
<h4>Primary care (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//primary_care/CPRD_peritonitis.csv'>CPRD_peritonitis.csv</a>)</h4>
<table>
<thead>
<tr>
<th>Read code</th>
<th>Read Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="right">7618100</td>
<td align="left">Closure of perforation of stomach NEC</td>
</tr>
<tr>
<td align="left">761C100</td>
<td align="left">Repair of perforation of pylorus</td>
</tr>
<tr>
<td align="left">761J000</td>
<td align="left">Closure of perforated gastric ulcer</td>
</tr>
<tr>
<td align="left">7623100.0</td>
<td align="left">Closure of perforation of duodenum NEC</td>
</tr>
<tr>
<td align="left">7627000.0</td>
<td align="left">Closure of perforated duodenal ulcer</td>
</tr>
<tr>
<td align="left">7635200.0</td>
<td align="left">Closure of perforation of jejunum</td>
</tr>
<tr>
<td align="left">7648300.0</td>
<td align="left">Closure of perforation of ileum</td>
</tr>
<tr>
<td align="left">773C600</td>
<td align="left">Closure of perforated bowel ulcer NEC</td>
</tr>
<tr>
<td align="left">7812200.0</td>
<td align="left">Repair of perforation of gall bladder</td>
</tr>
<tr>
<td align="left">A140.00</td>
<td align="left">Tuberculous peritonitis</td>
</tr>
<tr>
<td align="left">A32y200</td>
<td align="left">Diphtheritic peritonitis</td>
</tr>
<tr>
<td align="left">A98y500</td>
<td align="left">Gonococcal peritonitis</td>
</tr>
<tr>
<td align="left">J110200</td>
<td align="left">Acute gastric ulcer with perforation</td>
</tr>
<tr>
<td align="left">J110300</td>
<td align="left">Acute gastric ulcer with haemorrhage and perforation</td>
</tr>
<tr>
<td align="left">J111200</td>
<td align="left">Chronic gastric ulcer with perforation</td>
</tr>
<tr>
<td align="left">J111211</td>
<td align="left">Perforated chronic gastric ulcer</td>
</tr>
<tr>
<td align="left">J111300</td>
<td align="left">Chronic gastric ulcer with haemorrhage and perforation</td>
</tr>
<tr>
<td align="left">J11y200</td>
<td align="left">Unspecified gastric ulcer with perforation</td>
</tr>
<tr>
<td align="left">J11yy00</td>
<td align="left">Unspec gastric ulcer; unspec haemorrhage and/or perforation</td>
</tr>
<tr>
<td align="left">J120200</td>
<td align="left">Acute duodenal ulcer with perforation</td>
</tr>
<tr>
<td align="left">J120300</td>
<td align="left">Acute duodenal ulcer with haemorrhage and perforation</td>
</tr>
<tr>
<td align="left">J121200</td>
<td align="left">Chronic duodenal ulcer with perforation</td>
</tr>
<tr>
<td align="left">J121211</td>
<td align="left">Perforated chronic duodenal ulcer</td>
</tr>
<tr>
<td align="left">J121300</td>
<td align="left">Chronic duodenal ulcer with haemorrhage and perforation</td>
</tr>
<tr>
<td align="left">J12y200</td>
<td align="left">Unspecified duodenal ulcer with perforation</td>
</tr>
<tr>
<td align="left">J12y300</td>
<td align="left">Unspecified duodenal ulcer with haemorrhage and perforation</td>
</tr>
<tr>
<td align="left">J12yy00</td>
<td align="left">Unspec duodenal ulcer; unspec haemorrhage and/or perforation</td>
</tr>
<tr>
<td align="left">J130200</td>
<td align="left">Acute peptic ulcer with perforation</td>
</tr>
<tr>
<td align="left">J130300</td>
<td align="left">Acute peptic ulcer with haemorrhage and perforation</td>
</tr>
<tr>
<td align="left">J131200</td>
<td align="left">Chronic peptic ulcer with perforation</td>
</tr>
<tr>
<td align="left">J13y200</td>
<td align="left">Unspecified peptic ulcer with perforation</td>
</tr>
<tr>
<td align="left">J13y300</td>
<td align="left">Unspecified peptic ulcer with haemorrhage and perforation</td>
</tr>
<tr>
<td align="left">J140200</td>
<td align="left">Acute gastrojejunal ulcer with perforation</td>
</tr>
<tr>
<td align="left">J140300</td>
<td align="left">Acute gastrojejunal ulcer with haemorrhage and perforation</td>
</tr>
<tr>
<td align="left">J141300</td>
<td align="left">Chronic gastrojejunal ulcer with haemorrhage and perforation</td>
</tr>
<tr>
<td align="left">J14y200</td>
<td align="left">Unspecified gastrojejunal ulcer with perforation</td>
</tr>
<tr>
<td align="left">J179.00</td>
<td align="left">Perforation of stomach</td>
</tr>
<tr>
<td align="left">J200.00</td>
<td align="left">Acute appendicitis with peritonitis</td>
</tr>
<tr>
<td align="left">J201.00</td>
<td align="left">Acute appendicitis with appendix abscess</td>
</tr>
<tr>
<td align="left">J201.11</td>
<td align="left">Abscess of appendix</td>
</tr>
<tr>
<td align="left">J201.12</td>
<td align="left">Appendix abscess</td>
</tr>
<tr>
<td align="left">J203.00</td>
<td align="left">Acute appendicitis with generalised peritonitis</td>
</tr>
<tr>
<td align="left">J204.00</td>
<td align="left">Acute appendicitis with localised peritonitis</td>
</tr>
<tr>
<td align="left">J20z100</td>
<td align="left">Acute gangrenous appendicitis</td>
</tr>
<tr>
<td align="left">J512000</td>
<td align="left">Perforated diverticulum of duodenum</td>
</tr>
<tr>
<td align="left">J512100</td>
<td align="left">Perforated diverticulum of jejunum</td>
</tr>
<tr>
<td align="left">J512200</td>
<td align="left">Perforated diverticulum of ileum</td>
</tr>
<tr>
<td align="left">J512300</td>
<td align="left">Perforated diverticulum of small intestine unspecified</td>
</tr>
<tr>
<td align="left">J512400</td>
<td align="left">Perforated diverticulum of small intestine NOS</td>
</tr>
<tr>
<td align="left">J512500</td>
<td align="left">Perforated diverticulum of colon</td>
</tr>
<tr>
<td align="left">J512600</td>
<td align="left">Perforated diverticulum of large intestine unspecified</td>
</tr>
<tr>
<td align="left">J512700</td>
<td align="left">Perforated diverticulum of large intestine NOS</td>
</tr>
<tr>
<td align="left">J512800</td>
<td align="left">Divertic disease/both sml+lge intestin with perforat+abscess</td>
</tr>
<tr>
<td align="left">J512.00</td>
<td align="left">Perforated diverticulum</td>
</tr>
<tr>
<td align="left">J512y00</td>
<td align="left">Perforated diverticulum unspecified</td>
</tr>
<tr>
<td align="left">J512z00</td>
<td align="left">Perforated diverticulum of intestine NOS</td>
</tr>
<tr>
<td align="left">J550000</td>
<td align="left">Peritonitis - gonococcal</td>
</tr>
<tr>
<td align="left">J550200</td>
<td align="left">Peritonitis - tuberculous</td>
</tr>
<tr>
<td align="left">J550300</td>
<td align="left">Peritonitis - bacterial</td>
</tr>
<tr>
<td align="left">J550311</td>
<td align="left">Bacterial peritonitis</td>
</tr>
<tr>
<td align="left">J550400</td>
<td align="left">Chlamydial peritonitis</td>
</tr>
<tr>
<td align="left">J550.00</td>
<td align="left">Peritonitis in infectious diseases EC</td>
</tr>
<tr>
<td align="left">J550z00</td>
<td align="left">Peritonitis in infectious diseases EC NOS</td>
</tr>
<tr>
<td align="left">J551.00</td>
<td align="left">Pneumococcal peritonitis</td>
</tr>
<tr>
<td align="left">J552000</td>
<td align="left">Subhepatic abscess</td>
</tr>
<tr>
<td align="left">J552100</td>
<td align="left">Subphrenic abscess</td>
</tr>
<tr>
<td align="left">J552200</td>
<td align="left">Omental abscess</td>
</tr>
<tr>
<td align="left">J552300</td>
<td align="left">Mesenteric abscess</td>
</tr>
<tr>
<td align="left">J552400</td>
<td align="left">Peritoneal abscess</td>
</tr>
<tr>
<td align="left">J552500</td>
<td align="left">Subperitoneal abscess</td>
</tr>
<tr>
<td align="left">J552600</td>
<td align="left">Retroperitoneal abscess</td>
</tr>
<tr>
<td align="left">J552700</td>
<td align="left">Pre-ileal abscess</td>
</tr>
<tr>
<td align="left">J552800</td>
<td align="left">Pericolic abscess</td>
</tr>
<tr>
<td align="left">J552900</td>
<td align="left">Pericaecal abscess</td>
</tr>
<tr>
<td align="left">J552A00</td>
<td align="left">Retrocaecal abscess</td>
</tr>
<tr>
<td align="left">J552B00</td>
<td align="left">Male pelvic abscess</td>
</tr>
<tr>
<td align="left">J552.00</td>
<td align="left">Other suppurative peritonitis</td>
</tr>
<tr>
<td align="left">J552.11</td>
<td align="left">Abscess of suppurative peritonitis</td>
</tr>
<tr>
<td align="left">J552z00</td>
<td align="left">Other suppurative peritonitis NOS</td>
</tr>
<tr>
<td align="left">J553.00</td>
<td align="left">Acute peritonitis</td>
</tr>
<tr>
<td align="left">J554.00</td>
<td align="left">Spontaneous bacterial peritonitis</td>
</tr>
<tr>
<td align="left">J555.00</td>
<td align="left">Sclerosing peritonitis</td>
</tr>
<tr>
<td align="left">J557.00</td>
<td align="left">Streptococcal peritonitis</td>
</tr>
<tr>
<td align="left">J558.00</td>
<td align="left">Ventriculoperitoneal shunt-associated peritonitis</td>
</tr>
<tr>
<td align="left">J55..00</td>
<td align="left">Peritonitis</td>
</tr>
<tr>
<td align="left">J55y000</td>
<td align="left">Chronic proliferative peritonitis</td>
</tr>
<tr>
<td align="left">J55y100</td>
<td align="left">Peritoneal fat necrosis</td>
</tr>
<tr>
<td align="left">J55y300</td>
<td align="left">Peritonitis due to bile</td>
</tr>
<tr>
<td align="left">J55y400</td>
<td align="left">Peritonitis due to urine</td>
</tr>
<tr>
<td align="left">J55y500</td>
<td align="left">Faecal peritonitis</td>
</tr>
<tr>
<td align="left">J55y.00</td>
<td align="left">Other specified peritonitis</td>
</tr>
<tr>
<td align="left">J55yz00</td>
<td align="left">Other specified peritonitis NOS</td>
</tr>
<tr>
<td align="left">J55z.00</td>
<td align="left">Peritonitis NOS</td>
</tr>
<tr>
<td align="left">J574A00</td>
<td align="left">Rupture of rectum</td>
</tr>
<tr>
<td align="left">J57yB00</td>
<td align="left">Perforation of intestine</td>
</tr>
<tr>
<td align="left">J654.00</td>
<td align="left">Perforation of gallbladder</td>
</tr>
<tr>
<td align="left">J654z00</td>
<td align="left">Perforation of gallbladder NOS</td>
</tr>
<tr>
<td align="left">J663.00</td>
<td align="left">Perforation of bile duct</td>
</tr>
<tr>
<td align="left">Jyu6000</td>
<td align="left">[X]Other peritonitis</td>
</tr>
</tbody>
</table>
<h4>Secondary care diagnoses (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//secondary_care/ICD_peritonitis.csv'>ICD_peritonitis.csv</a>)</h4>
<table>
<thead>
<tr>
<th>ICD-10 code</th>
<th>ICD-10 Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left">K25.1</td>
<td align="left">Gastric ulcer - Acute with perforation</td>
</tr>
<tr>
<td align="left">K25.2</td>
<td align="left">Gastric ulcer - Acute with both haemorrhage and perforation</td>
</tr>
<tr>
<td align="left">K25.5</td>
<td align="left">Gastric ulcer - Chronic or unspecified with perforation</td>
</tr>
<tr>
<td align="left">K25.6</td>
<td align="left">Gastric ulcer - Chronic or unspecified with both haemorrhage and perforation</td>
</tr>
<tr>
<td align="left">K26.1</td>
<td align="left">Duodenal ulcer - Acute with perforation</td>
</tr>
<tr>
<td align="left">K26.2</td>
<td align="left">Duodenal ulcer - Acute with both haemorrhage and perforation</td>
</tr>
<tr>
<td align="left">K26.5</td>
<td align="left">Duodenal ulcer - Chronic or unspecified with perforation</td>
</tr>
<tr>
<td align="left">K26.6</td>
<td align="left">Duodenal ulcer - Chronic or unspecified with both haemorrhage and perforation</td>
</tr>
<tr>
<td align="left">K27.1</td>
<td align="left">Peptic ulcer, site unspecified - Acute with perforation</td>
</tr>
<tr>
<td align="left">K27.2</td>
<td align="left">Peptic ulcer, site unspecified - Acute with both haemorrhage and perforation</td>
</tr>
<tr>
<td align="left">K27.5</td>
<td align="left">Peptic ulcer, site unspecified - Chronic or unspecified with perforation</td>
</tr>
<tr>
<td align="left">K27.6</td>
<td align="left">Peptic ulcer, site unspecified - Chronic or unspecified with both haemorrhage and perforation</td>
</tr>
<tr>
<td align="left">K28.1</td>
<td align="left">Gastrojejunal ulcer - Acute with perforation</td>
</tr>
<tr>
<td align="left">K28.2</td>
<td align="left">Gastrojejunal ulcer - Acute with both haemorrhage and perforation</td>
</tr>
<tr>
<td align="left">K28.5</td>
<td align="left">Gastrojejunal ulcer - Chronic or unspecified with perforation</td>
</tr>
<tr>
<td align="left">K28.6</td>
<td align="left">Gastrojejunal ulcer - Chronic or unspecified with both haemorrhage and perforation</td>
</tr>
<tr>
<td align="left">K35.2</td>
<td align="left">Acute appendicitis with generalized peritonitis</td>
</tr>
<tr>
<td align="left">K35.3</td>
<td align="left">Acute appendicitis with localized peritonitis</td>
</tr>
<tr>
<td align="left">K57.0</td>
<td align="left">Diverticular disease of small intestine with perforation and abscess</td>
</tr>
<tr>
<td align="left">K57.2</td>
<td align="left">Diverticular disease of large intestine with perforation and abscess</td>
</tr>
<tr>
<td align="left">K57.4</td>
<td align="left">Diverticular disease of both small and large intestine with perforation and abscess</td>
</tr>
<tr>
<td align="left">K57.8</td>
<td align="left">Diverticular disease of intestine, part unspecified, with perforation and abscess</td>
</tr>
<tr>
<td align="left">K63.1</td>
<td align="left">Perforation of intestine (nontraumatic)</td>
</tr>
<tr>
<td align="left">K65</td>
<td align="left">Peritonitis</td>
</tr>
<tr>
<td align="left">K67</td>
<td align="left">Disorders of peritoneum in infectious diseases classified elsewhere</td>
</tr>
</tbody>
</table>
<h4>Secondary care procedures (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//secondary_care/OPCS_peritonitis.csv'>OPCS_peritonitis.csv</a>)</h4>
<table>
<thead>
<tr>
<th>OPCS-4 code</th>
<th>OPCS-4 Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left">G35.1</td>
<td align="left">Closure of perforated ulcer of stomach</td>
</tr>
<tr>
<td align="left">G36.2</td>
<td align="left">Closure of perforation of stomach NEC</td>
</tr>
<tr>
<td align="left">G41.2</td>
<td align="left">Repair of perforation of pylorus</td>
</tr>
<tr>
<td align="left">G52.1</td>
<td align="left">Closure of perforated ulcer of duodenum</td>
</tr>
<tr>
<td align="left">G53.2</td>
<td align="left">Closure of perforation of duodenum NEC</td>
</tr>
<tr>
<td align="left">G63.3</td>
<td align="left">Closure of perforation of jejunum</td>
</tr>
<tr>
<td align="left">G78.4</td>
<td align="left">Closure of perforation of ileum</td>
</tr>
<tr>
<td align="left">J20.3</td>
<td align="left">Repair of perforation of gall bladder</td>
</tr>
</tbody>
</table>
<h2>Personality disorders</h2>
<h4>Implementation</h4>
~~~
At the specified date, a patient is defined as having had 'Personality disorders's IF they meet the criteria for any of the following on or before the specified date. The earliest date on which the individual meets any of the following criteria on or before the specified date is defined as the first event date:
Primary care
1. 'Personality disorders's diagnosis or history of diagnosis during a consultation
OR
Secondary care
1. ALL diagnoses of 'Personality disorders's or history of diagnosis during a hospitalization
~~~
<h4>Primary care (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//primary_care/CPRD_PD.csv'>CPRD_PD.csv</a>)</h4>
<table>
<thead>
<tr>
<th>Read code</th>
<th>Read Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left">E210.00</td>
<td align="left">Paranoid personality disorder</td>
</tr>
<tr>
<td align="left">E212000</td>
<td align="left">Unspecified schizoid personality disorder</td>
</tr>
<tr>
<td align="left">E212100</td>
<td align="left">Introverted personality</td>
</tr>
<tr>
<td align="left">E212200</td>
<td align="left">Schizotypal personality</td>
</tr>
<tr>
<td align="left">E212.00</td>
<td align="left">Schizoid personality disorder</td>
</tr>
<tr>
<td align="left">E212z00</td>
<td align="left">Schizoid personality disorder NOS</td>
</tr>
<tr>
<td align="left">E213.00</td>
<td align="left">Explosive personality disorder</td>
</tr>
<tr>
<td align="left">E213.11</td>
<td align="left">Aggressive personality</td>
</tr>
<tr>
<td align="left">E213.12</td>
<td align="left">Quarrelsome personality</td>
</tr>
<tr>
<td align="left">E214000</td>
<td align="left">Anankastic personality</td>
</tr>
<tr>
<td align="left">E214100</td>
<td align="left">Obsessional personality</td>
</tr>
<tr>
<td align="left">E214.00</td>
<td align="left">Compulsive personality disorders</td>
</tr>
<tr>
<td align="left">E214.11</td>
<td align="left">Anancastic personality</td>
</tr>
<tr>
<td align="left">E214z00</td>
<td align="left">Compulsive personality disorder NOS</td>
</tr>
<tr>
<td align="left">E215000</td>
<td align="left">Unspecified histrionic personality disorder</td>
</tr>
<tr>
<td align="left">E215200</td>
<td align="left">Emotionally unstable personality</td>
</tr>
<tr>
<td align="left">E215300</td>
<td align="left">Psychoinfantile personality</td>
</tr>
<tr>
<td align="left">E215.00</td>
<td align="left">Histrionic personality disorders</td>
</tr>
<tr>
<td align="left">E215.11</td>
<td align="left">Hysterical personality disorders</td>
</tr>
<tr>
<td align="left">E215z00</td>
<td align="left">Histrionic personality disorder NOS</td>
</tr>
<tr>
<td align="left">E216.00</td>
<td align="left">Inadequate personality disorder</td>
</tr>
<tr>
<td align="left">E216.11</td>
<td align="left">Asthenic personality</td>
</tr>
<tr>
<td align="left">E216.12</td>
<td align="left">Dependent personality</td>
</tr>
<tr>
<td align="left">E216.13</td>
<td align="left">Labile personality</td>
</tr>
<tr>
<td align="left">E217.00</td>
<td align="left">Antisocial or sociopathic personality disorder</td>
</tr>
<tr>
<td align="left">E217.11</td>
<td align="left">Amoral personality</td>
</tr>
<tr>
<td align="left">E21..00</td>
<td align="left">Personality disorders</td>
</tr>
<tr>
<td align="left">E21..11</td>
<td align="left">Neurotic personality disorder</td>
</tr>
<tr>
<td align="left">E21y000</td>
<td align="left">Narcissistic personality disorder</td>
</tr>
<tr>
<td align="left">E21y100</td>
<td align="left">Avoidant personality disorder</td>
</tr>
<tr>
<td align="left">E21y200</td>
<td align="left">Borderline personality disorder</td>
</tr>
<tr>
<td align="left">E21y300</td>
<td align="left">Passive-aggressive personality disorder</td>
</tr>
<tr>
<td align="left">E21y400</td>
<td align="left">Eccentric personality disorder</td>
</tr>
<tr>
<td align="left">E21y500</td>
<td align="left">Immature personality disorder</td>
</tr>
<tr>
<td align="left">E21y600</td>
<td align="left">Masochistic personality disorder</td>
</tr>
<tr>
<td align="left">E21y700</td>
<td align="left">Psychoneurotic personality disorder</td>
</tr>
<tr>
<td align="left">E21y711</td>
<td align="left">Neurotic personality</td>
</tr>
<tr>
<td align="left">E21y.00</td>
<td align="left">Other personality disorders</td>
</tr>
<tr>
<td align="left">E21yz00</td>
<td align="left">Other personality disorder NOS</td>
</tr>
<tr>
<td align="left">E21yz11</td>
<td align="left">Manipulative personality</td>
</tr>
<tr>
<td align="left">E21z.00</td>
<td align="left">Personality disorder NOS</td>
</tr>
<tr>
<td align="left">E21z.11</td>
<td align="left">Psychopathic personality</td>
</tr>
<tr>
<td align="left">E2C3500</td>
<td align="left">Isolated explosive disorder</td>
</tr>
<tr>
<td align="left">Eu60000</td>
<td align="left">[X]Paranoid personality disorder</td>
</tr>
<tr>
<td align="left">Eu60013</td>
<td align="left">[X]Querulant personality disorder</td>
</tr>
<tr>
<td align="left">Eu60014</td>
<td align="left">[X]Sensitive paranoid personality disorder</td>
</tr>
<tr>
<td align="left">Eu60100</td>
<td align="left">[X]Schizoid personality disorder</td>
</tr>
<tr>
<td align="left">Eu60200</td>
<td align="left">[X]Dissocial personality disorder</td>
</tr>
<tr>
<td align="left">Eu60211</td>
<td align="left">[X]Amoral personality disorder</td>
</tr>
<tr>
<td align="left">Eu60212</td>
<td align="left">[X]Antisocial personality disorder</td>
</tr>
<tr>
<td align="left">Eu60213</td>
<td align="left">[X]Asocial personality disorder</td>
</tr>
<tr>
<td align="left">Eu60214</td>
<td align="left">[X]Psychopathic personality disorder</td>
</tr>
<tr>
<td align="left">Eu60215</td>
<td align="left">[X]Sociopathic personality disorder</td>
</tr>
<tr>
<td align="left">Eu60300</td>
<td align="left">[X]Emotionally unstable personality disorder</td>
</tr>
<tr>
<td align="left">Eu60311</td>
<td align="left">[X]Aggressive personality disorder</td>
</tr>
<tr>
<td align="left">Eu60312</td>
<td align="left">[X]Borderline personality disorder</td>
</tr>
<tr>
<td align="left">Eu60313</td>
<td align="left">[X]Explosive personality disorder</td>
</tr>
<tr>
<td align="left">Eu60400</td>
<td align="left">[X]Histrionic personality disorder</td>
</tr>
<tr>
<td align="left">Eu60411</td>
<td align="left">[X]Hysterical personality disorder</td>
</tr>
<tr>
<td align="left">Eu60412</td>
<td align="left">[X]Psychoinfantile personality disorder</td>
</tr>
<tr>
<td align="left">Eu60500</td>
<td align="left">[X]Anankastic personality disorder</td>
</tr>
<tr>
<td align="left">Eu60511</td>
<td align="left">[X]Compulsive personality disorder</td>
</tr>
<tr>
<td align="left">Eu60512</td>
<td align="left">[X]Obsessional personality disorder</td>
</tr>
<tr>
<td align="left">Eu60513</td>
<td align="left">[X]Obsessive-compulsive personality disorder</td>
</tr>
<tr>
<td align="left">Eu60600</td>
<td align="left">[X]Anxious [avoidant] personality disorder</td>
</tr>
<tr>
<td align="left">Eu60700</td>
<td align="left">[X]Dependent personality disorder</td>
</tr>
<tr>
<td align="left">Eu60711</td>
<td align="left">[X]Asthenic personality disorder</td>
</tr>
<tr>
<td align="left">Eu60712</td>
<td align="left">[X]Inadequate personality disorder</td>
</tr>
<tr>
<td align="left">Eu60713</td>
<td align="left">[X]Passive personality disorder</td>
</tr>
<tr>
<td align="left">Eu60714</td>
<td align="left">[X]Self defeating personality disorder</td>
</tr>
<tr>
<td align="left">Eu60800</td>
<td align="left">[X]Addictive personality</td>
</tr>
<tr>
<td align="left">Eu60.00</td>
<td align="left">[X]Specific personality disorders</td>
</tr>
<tr>
<td align="left">Eu60y00</td>
<td align="left">[X]Other specific personality disorders</td>
</tr>
<tr>
<td align="left">Eu60y11</td>
<td align="left">[X]Eccentric personality disorder</td>
</tr>
<tr>
<td align="left">Eu60y12</td>
<td align="left">[X]Haltlose type personality disorder</td>
</tr>
<tr>
<td align="left">Eu60y13</td>
<td align="left">[X]Immature personality disorder</td>
</tr>
<tr>
<td align="left">Eu60y14</td>
<td align="left">[X]Narcissistic personality disorder</td>
</tr>
<tr>
<td align="left">Eu60y16</td>
<td align="left">[X]Psychoneurotic personality disorder</td>
</tr>
<tr>
<td align="left">Eu60z00</td>
<td align="left">[X]Personality disorder, unspecified</td>
</tr>
<tr>
<td align="left">Eu60z11</td>
<td align="left">[X]Character neurosis NOS</td>
</tr>
<tr>
<td align="left">Eu60z12</td>
<td align="left">[X]Pathological personality NOS</td>
</tr>
<tr>
<td align="left">Eu61.00</td>
<td align="left">[X]Mixed and other personality disorders</td>
</tr>
</tbody>
</table>
<h4>Secondary care diagnoses (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//secondary_care/ICD_PD.csv'>ICD_PD.csv</a>)</h4>
<table>
<thead>
<tr>
<th>ICD-10 code</th>
<th>ICD-10 Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left">F60</td>
<td align="left">Specific personality disorders</td>
</tr>
<tr>
<td align="left">F61</td>
<td align="left">Mixed and other personality disorders</td>
</tr>
</tbody>
</table>
<h2>Pilonidal cyst/sinus</h2>
<h4>Implementation</h4>
~~~
At the specified date, a patient is defined as having had 'Pilonidal cyst/sinus' IF they meet the criteria for any of the following on or before the specified date. The earliest date on which the individual meets any of the following criteria on or before the specified date is defined as the first event date:
Primary care
1. 'Pilonidal cyst/sinus' diagnosis or history of diagnosis during a consultation
OR
Secondary care (ICD10)
1. ALL diagnoses of 'Pilonidal cyst/sinus' or history of diagnosis during a hospitalization
OR
Secondary care (OPCS4)
1. ALL procedures for 'Pilonidal cyst/sinus' during a hospitalization
~~~
<h4>Primary care (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//primary_care/CPRD_pilonidal.csv'>CPRD_pilonidal.csv</a>)</h4>
<table>
<thead>
<tr>
<th>Read code</th>
<th>Read Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left">773B000</td>
<td align="left">Excision of pilonidal sinus and Z plasty skin flap HFQ</td>
</tr>
<tr>
<td align="left">773B100</td>
<td align="left">Excision of pilonidal sinus and skin flap NEC</td>
</tr>
<tr>
<td align="left">773B200</td>
<td align="left">Excision of pilonidal sinus and skin graft HFQ</td>
</tr>
<tr>
<td align="left">773B300</td>
<td align="left">Excision of pilonidal sinus and suture HFQ</td>
</tr>
<tr>
<td align="left">773B400</td>
<td align="left">Excision of pilonidal sinus NEC</td>
</tr>
<tr>
<td align="left">773B500</td>
<td align="left">Laying open of track of pilonidal sinus</td>
</tr>
<tr>
<td align="left">773B.00</td>
<td align="left">Pilonidal sinus operations</td>
</tr>
<tr>
<td align="left">773B700</td>
<td align="left">Drainage of pilonidal sinus</td>
</tr>
<tr>
<td align="left">773B800</td>
<td align="left">Injection of radiocontrast substance into pilonidal sinus</td>
</tr>
<tr>
<td align="left">773B900</td>
<td align="left">Destruction of pilonidal sinus NEC</td>
</tr>
<tr>
<td align="left">773BA00</td>
<td align="left">Other specified excision of pilonidal sinus</td>
</tr>
<tr>
<td align="left">773Bx00</td>
<td align="left">Excision of pilonidal sinus NOS</td>
</tr>
<tr>
<td align="left">773By00</td>
<td align="left">Other specified operation on pilonidal sinus</td>
</tr>
<tr>
<td align="left">773Bz00</td>
<td align="left">Operation on pilonidal sinus NOS</td>
</tr>
<tr>
<td align="left">M060.00</td>
<td align="left">Pilonidal cyst with abscess</td>
</tr>
<tr>
<td align="left">M061.00</td>
<td align="left">Pilonidal cyst with no abscess</td>
</tr>
<tr>
<td align="left">M062.00</td>
<td align="left">Pilonidal sinus with abscess</td>
</tr>
<tr>
<td align="left">M063.00</td>
<td align="left">Pilonidal sinus without abscess</td>
</tr>
<tr>
<td align="left">M06..00</td>
<td align="left">Pilonidal sinus/cyst</td>
</tr>
<tr>
<td align="left">M06z.00</td>
<td align="left">Pilonidal sinus/cyst NOS</td>
</tr>
</tbody>
</table>
<h4>Secondary care diagnoses (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//secondary_care/ICD_pilonidal.csv'>ICD_pilonidal.csv</a>)</h4>
<table>
<thead>
<tr>
<th>ICD-10 code</th>
<th>ICD-10 Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left">L05</td>
<td align="left">Pilonidal cyst</td>
</tr>
</tbody>
</table>
<h4>Secondary care procedures (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//secondary_care/OPCS_pilonidal.csv'>OPCS_pilonidal.csv</a>)</h4>
<table>
<thead>
<tr>
<th>OPCS-4 code</th>
<th>OPCS-4 Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left">H59.1</td>
<td align="left">Excision of pilonidal sinus and Z plasty skin flap HFQ</td>
</tr>
<tr>
<td align="left">H59.2</td>
<td align="left">Excision of pilonidal sinus and skin flap NEC</td>
</tr>
<tr>
<td align="left">H59.3</td>
<td align="left">Excision of pilonidal sinus and skin graft HFQ</td>
</tr>
<tr>
<td align="left">H59.4</td>
<td align="left">Excision of pilonidal sinus and suture HFQ</td>
</tr>
<tr>
<td align="left">H59.8</td>
<td align="left">Other specified excision of pilonidal sinus</td>
</tr>
<tr>
<td align="left">H59.9</td>
<td align="left">Unspecified excision of pilonidal sinus</td>
</tr>
<tr>
<td align="left">H60.1</td>
<td align="left">Destruction of pilonidal sinus</td>
</tr>
<tr>
<td align="left">H60.2</td>
<td align="left">Laying open of pilonidal sinus</td>
</tr>
<tr>
<td align="left">H60.3</td>
<td align="left">Drainage of pilonidal sinus</td>
</tr>
<tr>
<td align="left">H60.4</td>
<td align="left">Injection of radiocontrast substance into pilonidal sinus</td>
</tr>
<tr>
<td align="left">H60.8</td>
<td align="left">Other specified other operations on pilonidal sinus</td>
</tr>
<tr>
<td align="left">H60.9</td>
<td align="left">Unspecified other operations on pilonidal sinus</td>
</tr>
</tbody>
</table>
<h2>Pleural effusion</h2>
<h4>Implementation</h4>
~~~
At the specified date, a patient is defined as having had 'Pleural effusion' IF they meet the criteria for any of the following on or before the specified date. The earliest date on which the individual meets any of the following criteria on or before the specified date is defined as the first event date:
Primary care
1. Other 'Pleural effusion' diagnosis or history of diagnosis during a consultation
OR
Secondary care (ICD10)
1. ALL diagnoses of 'Pleural effusion' or history of diagnosis during a hospitalization
~~~
<h4>Primary care (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//primary_care/CPRD_pleural_effusion.csv'>CPRD_pleural_effusion.csv</a>)</h4>
<table>
<thead>
<tr>
<th>Read code</th>
<th>Read Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left">H511000</td>
<td align="left">Pneumococcal pleurisy with effusion</td>
</tr>
<tr>
<td align="left">H511100</td>
<td align="left">Staphylococcal pleurisy with effusion</td>
</tr>
<tr>
<td align="left">H511200</td>
<td align="left">Streptococcal pleurisy with effusion</td>
</tr>
<tr>
<td align="left">H511.00</td>
<td align="left">Bacterial pleurisy with effusion</td>
</tr>
<tr>
<td align="left">H511z00</td>
<td align="left">Bacterial pleurisy with effusion NOS</td>
</tr>
<tr>
<td align="left">H51y400</td>
<td align="left">Hydrothorax</td>
</tr>
<tr>
<td align="left">H51y500</td>
<td align="left">Chylous effusion</td>
</tr>
<tr>
<td align="left">H51y700</td>
<td align="left">Malignant pleural effusion</td>
</tr>
<tr>
<td align="left">H51y.00</td>
<td align="left">Other pleural effusion excluding mention of tuberculosis</td>
</tr>
<tr>
<td align="left">H51yz00</td>
<td align="left">Other pleural effusion</td>
</tr>
<tr>
<td align="left">H51z000</td>
<td align="left">Exudative pleurisy NOS</td>
</tr>
<tr>
<td align="left">H51z100</td>
<td align="left">Serofibrinous pleurisy NOS</td>
</tr>
<tr>
<td align="left">H51z200</td>
<td align="left">Serous pleurisy NOS</td>
</tr>
<tr>
<td align="left">H51z.00</td>
<td align="left">Pleural effusion NOS</td>
</tr>
<tr>
<td align="left">H51zz00</td>
<td align="left">Pleural effusion NOS</td>
</tr>
<tr>
<td align="left">Hyu7000</td>
<td align="left">[X]Pleural effusion in conditions classified elsewhere</td>
</tr>
</tbody>
</table>
<h4>Secondary care diagnoses (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//secondary_care/ICD_pleural_effusion.csv'>ICD_pleural_effusion.csv</a>)</h4>
<table>
<thead>
<tr>
<th>ICD-10 code</th>
<th>ICD-10 Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left">J90</td>
<td align="left">Pleural effusion, not elsewhere classified</td>
</tr>
<tr>
<td align="left">J91</td>
<td align="left">Pleural effusion in conditions classified elsewhere</td>
</tr>
</tbody>
</table>
<h2>Pleural plaque</h2>
<h4>Implementation</h4>
~~~
At the specified date, a patient is defined as having had 'Pleural plaque' IF they meet the criteria for any of the following on or before the specified date. The earliest date on which the individual meets any of the following criteria on or before the specified date is defined as the first event date:
Primary care
1. Other 'Pleural plaque' diagnosis or history of diagnosis during a consultation
OR
Secondary care (ICD10)
1. ALL diagnoses of 'Pleural plaque' or history of diagnosis during a hospitalization
~~~
<h4>Primary care (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//primary_care/CPRD_pleural_plaque.csv'>CPRD_pleural_plaque.csv</a>)</h4>
<table>
<thead>
<tr>
<th>Read code</th>
<th>Read Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left">H410.00</td>
<td align="left">Pleural plaque disease due to asbestosis</td>
</tr>
<tr>
<td align="left">H410.11</td>
<td align="left">Asbestos-induced pleural plaque</td>
</tr>
<tr>
<td align="left">H510100</td>
<td align="left">Thickening of pleura</td>
</tr>
<tr>
<td align="left">H510C00</td>
<td align="left">Pleural plaque</td>
</tr>
</tbody>
</table>
<h4>Secondary care diagnoses (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//secondary_care/ICD_pleural_plaque.csv'>ICD_pleural_plaque.csv</a>)</h4>
<table>
<thead>
<tr>
<th>ICD-10 code</th>
<th>ICD-10 Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left">J92.0</td>
<td align="left">Pleural plaque with presence of asbestos</td>
</tr>
<tr>
<td align="left">J92.9</td>
<td align="left">Pleural plaque without asbestos</td>
</tr>
</tbody>
</table>
<h2>Pneumothorax</h2>
<h4>Implementation</h4>
~~~
At the specified date, a patient is defined as having had 'Pneumothorax' IF they meet the criteria for any of the following on or before the specified date. The earliest date on which the individual meets any of the following criteria on or before the specified date is defined as the first event date:
Primary care
1. Other 'Pneumothorax' diagnosis or history of diagnosis during a consultation
OR
Secondary care (ICD10)
1. ALL diagnoses of 'Pneumothorax' or history of diagnosis during a hospitalization
~~~
<h4>Primary care (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//primary_care/CPRD_pneumothorax.csv'>CPRD_pneumothorax.csv</a>)</h4>
<table>
<thead>
<tr>
<th>Read code</th>
<th>Read Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left">14B5.00</td>
<td align="left">H/O: pneumothorax</td>
</tr>
<tr>
<td align="left">H520.00</td>
<td align="left">Spontaneous tension pneumothorax</td>
</tr>
<tr>
<td align="left">H52..00</td>
<td align="left">Pneumothorax</td>
</tr>
<tr>
<td align="left">H52y000</td>
<td align="left">Acute pneumothorax NOS</td>
</tr>
<tr>
<td align="left">H52y100</td>
<td align="left">Chronic pneumothorax</td>
</tr>
<tr>
<td align="left">H52y.00</td>
<td align="left">Other spontaneous pneumothorax</td>
</tr>
<tr>
<td align="left">H52yz00</td>
<td align="left">Other spontaneous pneumothorax NOS</td>
</tr>
<tr>
<td align="left">H52yz11</td>
<td align="left">Spontaneous pneumothorax NOS</td>
</tr>
<tr>
<td align="left">H52z.00</td>
<td align="left">Pneumothorax NOS</td>
</tr>
<tr>
<td align="left">Hyu7100</td>
<td align="left">[X]Other spontaneous pneumothorax</td>
</tr>
<tr>
<td align="left">Hyu7200</td>
<td align="left">[X]Other pneumothorax</td>
</tr>
</tbody>
</table>
<h4>Secondary care diagnoses (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//secondary_care/ICD_pneumothorax.csv'>ICD_pneumothorax.csv</a>)</h4>
<table>
<thead>
<tr>
<th>ICD-10 code</th>
<th>ICD-10 Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left">J93</td>
<td align="left">Pneumothorax</td>
</tr>
</tbody>
</table>
<h2>Polycystic ovarian syndrome</h2>
<h4>Implementation</h4>
~~~
At the specified date, a patient is defined as having had 'Polycystic ovarian syndrome' IF they meet the criteria for any of the following on or before the specified date. The earliest date on which the individual meets any of the following criteria on or before the specified date is defined as the first event date:
Primary care
1. 'Polycystic ovarian syndrome' diagnosis or history of diagnosis during a consultation
OR
Secondary care (ICD10)
1. ALL diagnoses of 'Polycystic ovarian syndrome' or history of diagnosis during a hospitalization
~~~
<h4>Primary care (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//primary_care/CPRD_PCOS.csv'>CPRD_PCOS.csv</a>)</h4>
<table>
<thead>
<tr>
<th>Read code</th>
<th>Read Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left">C164.12</td>
<td align="left">Stein - Leventhal syndrome</td>
</tr>
<tr>
<td align="left">C165.00</td>
<td align="left">Polycystic ovarian syndrome</td>
</tr>
</tbody>
</table>
<h4>Secondary care diagnoses (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//secondary_care/ICD_PCOS.csv'>ICD_PCOS.csv</a>)</h4>
<table>
<thead>
<tr>
<th>ICD-10 code</th>
<th>ICD-10 Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left">E28.2</td>
<td align="left">Polycystic ovarian syndrome</td>
</tr>
</tbody>
</table>
<h2>Polycythaemia vera</h2>
<h4>Implementation</h4>
~~~
At the specified date, a patient is defined as having had 'Polycythaemia vera' IF they meet the criteria for any of the following on or before the specified date. The earliest date on which the individual meets any of the following criteria on or before the specified date is defined as the first event date:
Primary care
1. 'Polycythaemia vera' diagnosis or history of diagnosis during a consultation
OR
Secondary care
1. ALL diagnoses of 'Polycythaemia vera' or history of diagnosis during a hospitalization
~~~
<h4>Primary care (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//primary_care/CPRD_PCV.csv'>CPRD_PCV.csv</a>)</h4>
<table>
<thead>
<tr>
<th>Read code</th>
<th>Read Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left">B671.00</td>
<td align="left">Chronic erythraemia</td>
</tr>
<tr>
<td align="left">B671.11</td>
<td align="left">Heilmeyer - Schoner disease</td>
</tr>
<tr>
<td align="left">B934.00</td>
<td align="left">Polycythaemia vera</td>
</tr>
<tr>
<td align="left">B934.11</td>
<td align="left">Polycythaemia rubra vera</td>
</tr>
<tr>
<td align="left">B934.12</td>
<td align="left">Primary polycythaemia</td>
</tr>
<tr>
<td align="left">BBs0.00</td>
<td align="left">[M]Polycythaemia vera</td>
</tr>
<tr>
<td align="left">BBs0.11</td>
<td align="left">[M]Polycythaemia rubra vera</td>
</tr>
</tbody>
</table>
<h4>Secondary care diagnoses (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//secondary_care/ICD_PCV.csv'>ICD_PCV.csv</a>)</h4>
<table>
<thead>
<tr>
<th>ICD-10 code</th>
<th>ICD-10 Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left">D45</td>
<td align="left">Polycythaemia vera</td>
</tr>
</tbody>
</table>
<h2>Polymyalgia Rheumatica</h2>
<h4>Implementation</h4>
~~~
At the specified date, a patient is defined as having had 'Polymyalgia Rheumatica' IF they meet the criteria for any of the following on or before the specified date. The earliest date on which the individual meets any of the following criteria on or before the specified date is defined as the first event date:
Primary care
1. 'Polymyalgia Rheumatica' diagnosis or history of diagnosis during a consultation
OR
Secondary care (ICD10)
1. ALL diagnoses of 'Polymyalgia Rheumatica' or history of diagnosis during a hospitalization
~~~
<h4>Primary care (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//primary_care/CPRD_PMR.csv'>CPRD_PMR.csv</a>)</h4>
<table>
<thead>
<tr>
<th>Read code</th>
<th>Read Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left">N200.00</td>
<td align="left">Giant cell arteritis with polymyalgia rheumatica</td>
</tr>
<tr>
<td align="left">N20..00</td>
<td align="left">Polymyalgia rheumatica</td>
</tr>
<tr>
<td align="left">N20..11</td>
<td align="left">Polymyalgia</td>
</tr>
</tbody>
</table>
<h4>Secondary care diagnoses (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//secondary_care/ICD_PMR.csv'>ICD_PMR.csv</a>)</h4>
<table>
<thead>
<tr>
<th>ICD-10 code</th>
<th>ICD-10 Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left">M31.5</td>
<td align="left">Giant cell arteritis with polymyalgia rheumatica</td>
</tr>
<tr>
<td align="left">M35.3</td>
<td align="left">Polymyalgia rheumatica</td>
</tr>
</tbody>
</table>
<h2>Portal hypertension</h2>
<h4>Implementation</h4>
~~~
At the specified date, a patient is defined as having had 'Portal hypertension' IF they meet the criteria for any of the following on or before the specified date. The earliest date on which the individual meets any of the following criteria on or before the specified date is defined as the first event date:
Primary care
1. 'Portal hypertension' diagnosis or history of diagnosis or procedure during a consultation
OR
Secondary care
1. ALL diagnoses of 'Portal hypertension' or history of diagnosis during a hospitalization
~~~
<h4>Primary care (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//primary_care/CPRD_portal_htn.csv'>CPRD_portal_htn.csv</a>)</h4>
<table>
<thead>
<tr>
<th>Read code</th>
<th>Read Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left">J623.00</td>
<td align="left">Portal hypertension</td>
</tr>
</tbody>
</table>
<h4>Secondary care diagnoses (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//secondary_care/ICD_portal_htn.csv'>ICD_portal_htn.csv</a>)</h4>
<table>
<thead>
<tr>
<th>ICD-10 code</th>
<th>ICD-10 Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left">K76.6</td>
<td align="left">Portal hypertension</td>
</tr>
</tbody>
</table>
<h2>Post-term infant</h2>
<h4>Implementation</h4>
~~~
At the specified date, a patient is defined as having had Post-term infant IF they meet the criteria for any of the following on or before the specified date. The earliest date on which the individual meets any of the following criteria on or before the specified date is defined as the first event date:
Primary care
1. Post-term infant diagnosis or history of diagnosis during a consultation AND IF the patient is aged < 1y at the first event date
OR
Secondary care
1. ALL diagnoses of Post-term infant or history of diagnosis during a hospitalization AND IF the patient is aged < 1y at the first event date
~~~
<h4>Primary care (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//primary_care/CPRD_post_term.csv'>CPRD_post_term.csv</a>)</h4>
<table>
<thead>
<tr>
<th>Read code</th>
<th>Read Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="right">6355</td>
<td align="left">Baby post-mature</td>
</tr>
<tr>
<td align="left">635..12</td>
<td align="left">Postmature baby</td>
</tr>
<tr>
<td align="left">Q122.00</td>
<td align="left">Postmature infant - greater than 42 weeks gestation, unspec</td>
</tr>
</tbody>
</table>
<h4>Secondary care diagnoses (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//secondary_care/ICD_post_term.csv'>ICD_post_term.csv</a>)</h4>
<table>
<thead>
<tr>
<th>ICD-10 code</th>
<th>ICD-10 Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left">P08.2</td>
<td align="left">Post-term infant, not heavy for gestational age</td>
</tr>
</tbody>
</table>
<h2>Postcoital and contact bleeding</h2>
<h4>Implementation</h4>
~~~
At the specified date, a patient is defined as having had Postcoital and contact bleeding IF they meet the criteria for any of the following on or before the specified date. The earliest date on which the individual meets any of the following criteria on or before the specified date is defined as the first event date:
Primary care
1. Postcoital and contact bleeding diagnosis or history of diagnosis during a consultation
OR
Secondary care
1. ALL diagnoses of Postcoital and contact bleeding or history of diagnosis during a hospitalization
~~~
<h4>Primary care (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//primary_care/CPRD_PCB.csv'>CPRD_PCB.csv</a>)</h4>
<table>
<thead>
<tr>
<th>Read code</th>
<th>Read Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="right">1581</td>
<td align="left">H/O: post-coital bleeding</td>
</tr>
<tr>
<td align="left">K587.00</td>
<td align="left">Contact bleeding of cervix</td>
</tr>
<tr>
<td align="left">K597.00</td>
<td align="left">Postcoital bleeding</td>
</tr>
<tr>
<td align="left">K59A.00</td>
<td align="left">Premenopausal postcoital bleeding</td>
</tr>
<tr>
<td align="left">K59B.00</td>
<td align="left">Postmenopausal postcoital bleeding</td>
</tr>
</tbody>
</table>
<h4>Secondary care diagnoses (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//secondary_care/ICD_PCB.csv'>ICD_PCB.csv</a>)</h4>
<table>
<thead>
<tr>
<th>ICD-10 code</th>
<th>ICD-10 Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left">N93.0</td>
<td align="left">Postcoital and contact bleeding</td>
</tr>
</tbody>
</table>
<h2>Posterior Uveitis</h2>
<h4>Implementation</h4>
~~~
At the specified date, a patient is defined as having had 'Posterior Uveitis' IF they meet the criteria for any of the following on or before the specified date. The earliest date on which the individual meets any of the following criteria on or before the specified date is defined as the first event date:
Primary care
1. 'Posterior Uveitis'
diagnosis or history of diagnosis during a consultation
OR
Secondary care
1. ALL diagnoses of 'Posterior Uveitis' or history of diagnosis during a hospitalization
~~~
<h4>Primary care (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//primary_care/CPRD_post_uveitis.csv'>CPRD_post_uveitis.csv</a>)</h4>
<table>
<thead>
<tr>
<th>Read code</th>
<th>Read Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left">A173000</td>
<td align="left">Tuberculous chorioretinitis</td>
</tr>
<tr>
<td align="left">A900.12</td>
<td align="left">Congenital syphilitic choroiditis</td>
</tr>
<tr>
<td align="left">A915100</td>
<td align="left">Secondary syphilitic chorioretinitis</td>
</tr>
<tr>
<td align="left">A94y200</td>
<td align="left">Syphilitic disseminated retinochoroiditis</td>
</tr>
<tr>
<td align="left">AD02.00</td>
<td align="left">Toxoplasma chorioretinitis</td>
</tr>
<tr>
<td align="left">F401000</td>
<td align="left">Sympathetic uveitis</td>
</tr>
<tr>
<td align="left">F401100</td>
<td align="left">Panuveitis</td>
</tr>
<tr>
<td align="left">F430000</td>
<td align="left">Unspecified focal chorioretinitis</td>
</tr>
<tr>
<td align="left">F430100</td>
<td align="left">Focal juxtapapillary choroiditis</td>
</tr>
<tr>
<td align="left">F430200</td>
<td align="left">Other posterior pole focal chorioretinitis</td>
</tr>
<tr>
<td align="left">F430300</td>
<td align="left">Peripheral focal chorioretinitis</td>
</tr>
<tr>
<td align="left">F430400</td>
<td align="left">Focal juxtapapillary retinitis</td>
</tr>
<tr>
<td align="left">F430500</td>
<td align="left">Focal macular retinochoroiditis</td>
</tr>
<tr>
<td align="left">F430600</td>
<td align="left">Other posterior pole focal retinitis</td>
</tr>
<tr>
<td align="left">F430700</td>
<td align="left">Peripheral focal retinochoroiditis</td>
</tr>
<tr>
<td align="left">F430800</td>
<td align="left">Multifocal choroiditis</td>
</tr>
<tr>
<td align="left">F430.00</td>
<td align="left">Focal chorioretinitis and retinochoroiditis</td>
</tr>
<tr>
<td align="left">F430.11</td>
<td align="left">Retinitis and chorioretinitis</td>
</tr>
<tr>
<td align="left">F430z00</td>
<td align="left">Focal chorioretinitis or retinochoroiditis NOS</td>
</tr>
<tr>
<td align="left">F431000</td>
<td align="left">Unspecified disseminated chorioretinitis</td>
</tr>
<tr>
<td align="left">F431300</td>
<td align="left">General disseminated chorioretinitis</td>
</tr>
<tr>
<td align="left">F431400</td>
<td align="left">Metastatic disseminated retinitis</td>
</tr>
<tr>
<td align="left">F431500</td>
<td align="left">Pigmented epithelial disseminated retinitis</td>
</tr>
<tr>
<td align="left">F431600</td>
<td align="left">Punctate inner choroidopathy</td>
</tr>
<tr>
<td align="left">F431.00</td>
<td align="left">Disseminated chorioretinitis and retinochoroiditis</td>
</tr>
<tr>
<td align="left">F431z00</td>
<td align="left">Disseminated chorioretinitis and retinochoroiditis NOS</td>
</tr>
<tr>
<td align="left">F432000</td>
<td align="left">Choroiditis NOS</td>
</tr>
<tr>
<td align="left">F432100</td>
<td align="left">Retinitis NOS</td>
</tr>
<tr>
<td align="left">F432200</td>
<td align="left">Posterior uveitis NOS</td>
</tr>
<tr>
<td align="left">F432400</td>
<td align="left">Harada's disease</td>
</tr>
<tr>
<td align="left">F432.00</td>
<td align="left">Other chorioretinitis and retinochoroiditis</td>
</tr>
<tr>
<td align="left">F432z00</td>
<td align="left">Other chorioretinitis or retinochoroiditis NOS</td>
</tr>
<tr>
<td align="left">F442300</td>
<td align="left">Vogt-Koyanagi syndrome</td>
</tr>
<tr>
<td align="left">FyuF000</td>
<td align="left">[X]Other chorioretinal inflammations</td>
</tr>
</tbody>
</table>
<h4>Secondary care diagnoses (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//secondary_care/ICD_post_uveitis.csv'>ICD_post_uveitis.csv</a>)</h4>
<table>
<thead>
<tr>
<th>ICD-10 code</th>
<th>ICD-10 Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left">H30.0</td>
<td align="left">Focal chorioretinal inflammation</td>
</tr>
<tr>
<td align="left">H30.1</td>
<td align="left">Disseminated chorioretinal inflammation</td>
</tr>
<tr>
<td align="left">H30.8</td>
<td align="left">Other chorioretinal inflammations</td>
</tr>
<tr>
<td align="left">H30.9</td>
<td align="left">Chorioretinal inflammation, unspecified</td>
</tr>
<tr>
<td align="left">H32.0</td>
<td align="left">Chorioretinal inflammation in infectious and parasitic diseases classified elsewhere</td>
</tr>
</tbody>
</table>
<h2>Postinfective and reactive arthropathies</h2>
<h4>Implementation</h4>
~~~
At the specified date, a patient is defined as having had Postinfective and reactive arthropathies IF they meet the criteria for any of the following on or before the specified date. The earliest date on which the individual meets any of the following criteria on or before the specified date is defined as the first event date:
Primary care
1. Postinfective and reactive arthropathies diagnosis or history of diagnosis during a consultation
OR
Secondary care (ICD10)
1. ALL diagnoses of Postinfective and reactive arthropathies or history of diagnosis during a hospitalization
~~~
<h4>Primary care (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//primary_care/CPRD_reactive.csv'>CPRD_reactive.csv</a>)</h4>
<table>
<thead>
<tr>
<th>Read code</th>
<th>Read Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left">A993.00</td>
<td align="left">Reiter's disease / syndrome</td>
</tr>
<tr>
<td align="left">A993.11</td>
<td align="left">Reiter's syndrome</td>
</tr>
<tr>
<td align="left">M211400</td>
<td align="left">Keratoderma blennorrhagica</td>
</tr>
<tr>
<td align="left">N011400</td>
<td align="left">Sexually acquired reactive arthropathy of the hand</td>
</tr>
<tr>
<td align="left">N011600</td>
<td align="left">Sexually acquired reactive arthropathy of the lower leg</td>
</tr>
<tr>
<td align="left">N011.00</td>
<td align="left">Sexually acquired reactive arthropathy</td>
</tr>
<tr>
<td align="left">N011.12</td>
<td align="left">Arthropathy in Reiter's disease</td>
</tr>
<tr>
<td align="left">N011x00</td>
<td align="left">Sexually acquired reactive arthropathy of multiple sites</td>
</tr>
<tr>
<td align="left">N011z00</td>
<td align="left">Sexually acquired reactive arthropathy NOS</td>
</tr>
<tr>
<td align="left">N013400</td>
<td align="left">Postdysenteric reactive arthropathy of the hand</td>
</tr>
<tr>
<td align="left">N013700</td>
<td align="left">Postdysenteric reactive arthropathy of the ankle and foot</td>
</tr>
<tr>
<td align="left">N013.00</td>
<td align="left">Postdysenteric reactive arthropathy</td>
</tr>
<tr>
<td align="left">N013x00</td>
<td align="left">Postdysenteric reactive arthropathy of multiple sites</td>
</tr>
<tr>
<td align="left">N01w000</td>
<td align="left">Reactive arthropathy of shoulder</td>
</tr>
<tr>
<td align="left">N01w100</td>
<td align="left">Reactive arthropathy of sternoclavicular joint</td>
</tr>
<tr>
<td align="left">N01w300</td>
<td align="left">Reactive arthropathy of elbow</td>
</tr>
<tr>
<td align="left">N01w500</td>
<td align="left">Reactive arthropathy of wrist</td>
</tr>
<tr>
<td align="left">N01w600</td>
<td align="left">Reactive arthropathy of MCP joint</td>
</tr>
<tr>
<td align="left">N01w700</td>
<td align="left">Reactive arthropathy of PIP joint of finger</td>
</tr>
<tr>
<td align="left">N01w800</td>
<td align="left">Reactive arthropathy of DIP joint of finger</td>
</tr>
<tr>
<td align="left">N01w900</td>
<td align="left">Reactive arthropathy of hip</td>
</tr>
<tr>
<td align="left">N01wA00</td>
<td align="left">Reactive arthropathy of sacro-iliac joint</td>
</tr>
<tr>
<td align="left">N01wB00</td>
<td align="left">Reactive arthropathy of knee</td>
</tr>
<tr>
<td align="left">N01wD00</td>
<td align="left">Reactive arthropathy of ankle</td>
</tr>
<tr>
<td align="left">N01wH00</td>
<td align="left">Reactive arthropathy of 1st MTP joint</td>
</tr>
<tr>
<td align="left">N01wJ00</td>
<td align="left">Reactive arthropathy of lesser MTP joint</td>
</tr>
<tr>
<td align="left">N01wK00</td>
<td align="left">Reactive arthropathy of IP joint of toe</td>
</tr>
<tr>
<td align="left">N01w.00</td>
<td align="left">Reactive arthropathy, unspecified</td>
</tr>
<tr>
<td align="left">N038.00</td>
<td align="left">Reactive arthropathies</td>
</tr>
<tr>
<td align="left">Nyu0300</td>
<td align="left">[X]Other reactive arthropathies</td>
</tr>
<tr>
<td align="left">Nyu0400</td>
<td align="left">[X]Other postinfectious arthropathies in diseases CE</td>
</tr>
<tr>
<td align="left">Nyu0500</td>
<td align="left">[X]Reactive arthropathy in other diseases CE</td>
</tr>
</tbody>
</table>
<h4>Secondary care diagnoses (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//secondary_care/ICD_reactive.csv'>ICD_reactive.csv</a>)</h4>
<table>
<thead>
<tr>
<th>ICD-10 code</th>
<th>ICD-10 Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left">M02</td>
<td align="left">Reactive arthropathies</td>
</tr>
<tr>
<td align="left">M03</td>
<td align="left">Postinfective and reactive arthropathies in diseases classified elsewhere</td>
</tr>
</tbody>
</table>
<h2>Postmenopausal bleeding</h2>
<h4>Implementation</h4>
~~~
At the specified date, a patient is defined as having had 'Postmenopausal bleeding' IF they meet the criteria for any of the following on or before the specified date. The earliest date on which the individual meets any of the following criteria on or before the specified date is defined as the first event date:
Primary care
1. 'Postmenopausal bleeding' diagnosis or history of diagnosis during a consultation
OR
Secondary care
1. ALL diagnoses of 'Postmenopausal bleeding' or history of diagnosis during a hospitalization
~~~
<h4>Primary care (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//primary_care/CPRD_PMB.csv'>CPRD_PMB.csv</a>)</h4>
<table>
<thead>
<tr>
<th>Read code</th>
<th>Read Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="right">1583</td>
<td align="left">H/O: post-menopausal bleeding</td>
</tr>
<tr>
<td align="left">K59B.00</td>
<td align="left">Postmenopausal postcoital bleeding</td>
</tr>
<tr>
<td align="left">K5A1.00</td>
<td align="left">Postmenopausal bleeding</td>
</tr>
</tbody>
</table>
<h4>Secondary care diagnoses (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//secondary_care/ICD_PMB.csv'>ICD_PMB.csv</a>)</h4>
<table>
<thead>
<tr>
<th>ICD-10 code</th>
<th>ICD-10 Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left">N95.0</td>
<td align="left">Postmenopausal bleeding</td>
</tr>
</tbody>
</table>
<h2>Postviral fatigue syndrome, neurasthenia and fibromyalgia</h2>
<h4>Implementation</h4>
~~~
At the specified date, a patient is defined as having had Postviral fatigue syndrome, neurasthenia or fibromyalgia IF they meet the criteria for any of the following on or before the specified date. The earliest date on which the individual meets any of the following criteria on or before the specified date is defined as the first event date:
Primary care
1. Postviral fatigue syndrome, neurasthenia and fibromyalgia diagnosis or history of diagnosis during a consultation
OR
Secondary care
1. ALL diagnoses of Postviral fatigue syndrome, neurasthenia and fibromyalgia or history of diagnosis during a hospitalization
~~~
<h4>Primary care (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//primary_care/CPRD_chronic_fatigue.csv'>CPRD_chronic_fatigue.csv</a>)</h4>
<table>
<thead>
<tr>
<th>Read code</th>
<th>Read Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left">8HlL.00</td>
<td align="left">Referral for chronic fatigue syndrome activity management</td>
</tr>
<tr>
<td align="left">8HlL.11</td>
<td align="left">Referral for myalgic encephalopathy activity management</td>
</tr>
<tr>
<td align="left">8Q1..00</td>
<td align="left">Activity management for chronic fatigue syndrome</td>
</tr>
<tr>
<td align="left">8Q1..11</td>
<td align="left">Activity management for myalgic encephalopathy</td>
</tr>
<tr>
<td align="left">E205.00</td>
<td align="left">Neurasthenia - nervous debility</td>
</tr>
<tr>
<td align="left">Eu46000</td>
<td align="left">[X]Neurasthenia</td>
</tr>
<tr>
<td align="left">Eu46011</td>
<td align="left">[X]Fatigue syndrome</td>
</tr>
<tr>
<td align="left">F03y.12</td>
<td align="left">Myalgic encephalomyelitis</td>
</tr>
<tr>
<td align="left">F286000</td>
<td align="left">Mild chronic fatigue syndrome</td>
</tr>
<tr>
<td align="left">F286100</td>
<td align="left">Moderate chronic fatigue syndrome</td>
</tr>
<tr>
<td align="left">F286200</td>
<td align="left">Severe chronic fatigue syndrome</td>
</tr>
<tr>
<td align="left">F286.00</td>
<td align="left">Chronic fatigue syndrome</td>
</tr>
<tr>
<td align="left">F286.11</td>
<td align="left">CFS - Chronic fatigue syndrome</td>
</tr>
<tr>
<td align="left">F286.12</td>
<td align="left">Postviral fatigue syndrome</td>
</tr>
<tr>
<td align="left">F286.13</td>
<td align="left">PVFS - Postviral fatigue syn</td>
</tr>
<tr>
<td align="left">F286.14</td>
<td align="left">Post-viral fatigue syndrome</td>
</tr>
<tr>
<td align="left">F286.15</td>
<td align="left">Myalgic encephalomyelitis</td>
</tr>
<tr>
<td align="left">F286.16</td>
<td align="left">ME - Myalgic encephalomyelitis</td>
</tr>
<tr>
<td align="left">N239.00</td>
<td align="left">Fibromyalgia</td>
</tr>
<tr>
<td align="left">N240100</td>
<td align="left">Fibrositis unspecified</td>
</tr>
<tr>
<td align="left">N240500</td>
<td align="left">Fibrositis of neck</td>
</tr>
<tr>
<td align="left">N240600</td>
<td align="left">Fibrositis arm</td>
</tr>
<tr>
<td align="left">N248.00</td>
<td align="left">Fibromyalgia</td>
</tr>
<tr>
<td align="left">R007400</td>
<td align="left">[D]Postviral (asthenic) syndrome</td>
</tr>
<tr>
<td align="left">R007411</td>
<td align="left">[D]Post viral debility</td>
</tr>
</tbody>
</table>
<h4>Secondary care diagnoses (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//secondary_care/ICD_chronic_fatigue.csv'>ICD_chronic_fatigue.csv</a>)</h4>
<table>
<thead>
<tr>
<th>ICD-10 code</th>
<th>ICD-10 Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left">G93.3</td>
<td align="left">Postviral fatigue syndrome</td>
</tr>
<tr>
<td align="left">F48.0</td>
<td align="left">Neurasthenia</td>
</tr>
<tr>
<td align="left">M79.7</td>
<td align="left">Fibromyalgia</td>
</tr>
</tbody>
</table>
<h2>Prematurity</h2>
<h4>Implementation</h4>
~~~
At the specified date, a patient is defined as having had Prematurity IF they meet the criteria for any of the following on or before the specified date. The earliest date on which the individual meets any of the following criteria on or before the specified date is defined as the first event date:
Primary care
1. Prematurity diagnosis or history of diagnosis during a consultation AND IF the patient is aged < 1y at the first event date
OR
Secondary care
1. ALL diagnoses of Prematurity or history of diagnosis during a hospitalization AND IF the patient is aged < 1y at the first event date
~~~
<h4>Primary care (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//primary_care/CPRD_prematurity.csv'>CPRD_prematurity.csv</a>)</h4>
<table>
<thead>
<tr>
<th>Read code</th>
<th>Read Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="right">1546</td>
<td align="left">H/O: premature delivery</td>
</tr>
<tr>
<td align="right">6351</td>
<td align="left">Baby premature 36-38 weeks</td>
</tr>
<tr>
<td align="right">6352</td>
<td align="left">Baby v. premature 32-36 weeks</td>
</tr>
<tr>
<td align="right">6353</td>
<td align="left">Baby extremely prem.28-32 week</td>
</tr>
<tr>
<td align="left">635..13</td>
<td align="left">Premature baby</td>
</tr>
<tr>
<td align="right">6356</td>
<td align="left">Baby premature 26-28 weeks</td>
</tr>
<tr>
<td align="right">6357</td>
<td align="left">Baby premature 24-26 weeks</td>
</tr>
<tr>
<td align="left">635A.00</td>
<td align="left">Baby premature 37 weeks</td>
</tr>
<tr>
<td align="left">635B.00</td>
<td align="left">Baby premature 36 weeks</td>
</tr>
<tr>
<td align="left">635C.00</td>
<td align="left">Preterm infant status</td>
</tr>
<tr>
<td align="left">635C.11</td>
<td align="left">Preterm</td>
</tr>
<tr>
<td align="left">Q110.00</td>
<td align="left">Very premature - less than 1000g or less than 28 weeks</td>
</tr>
<tr>
<td align="left">Q110.11</td>
<td align="left">Immature baby</td>
</tr>
<tr>
<td align="left">Q111.00</td>
<td align="left">Premature - weight 1000g-2499g or gestation of 28-37weeks</td>
</tr>
<tr>
<td align="left">Q112.00</td>
<td align="left">Extreme immaturity</td>
</tr>
<tr>
<td align="left">Q112.11</td>
<td align="left">Extreme prematurity - less than 28 weeks</td>
</tr>
<tr>
<td align="left">Q116.00</td>
<td align="left">Premature infant 28-37 weeks</td>
</tr>
<tr>
<td align="left">Q11..11</td>
<td align="left">Baby born premature</td>
</tr>
<tr>
<td align="left">Q11z.00</td>
<td align="left">Born premature NOS</td>
</tr>
<tr>
<td align="left">Q317100</td>
<td align="left">Prematurity with interstitial pulmonary fibrosis</td>
</tr>
<tr>
<td align="left">Q432.00</td>
<td align="left">Preterm delivery associated jaundice</td>
</tr>
<tr>
<td align="left">Q456.00</td>
<td align="left">Anaemia of prematurity</td>
</tr>
<tr>
<td align="left">Qyu1100</td>
<td align="left">[X]Other preterm infants</td>
</tr>
</tbody>
</table>
<h4>Secondary care diagnoses (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//secondary_care/ICD_prematurity.csv'>ICD_prematurity.csv</a>)</h4>
<table>
<thead>
<tr>
<th>ICD-10 code</th>
<th>ICD-10 Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left">P07.2</td>
<td align="left">Extreme immaturity</td>
</tr>
<tr>
<td align="left">P07.3</td>
<td align="left">Other preterm infants</td>
</tr>
</tbody>
</table>
<h2>Primary Malignancy_Bladder</h2>
<h4>Implementation</h4>
~~~
At the specified date, a patient is defined as having had Primary Malignancy Bladder IF they meet the criteria for any of the following on or before the specified date. The earliest date on which the individual meets any of the following criteria on or before the specified date is defined as the first event date:
Primary care
1. Primary Malignancy_Bladder diagnosis or history of diagnosis during a consultation
OR
Secondary care
1. ALL diagnoses of Primary Malignancy_Bladder or history of diagnosis during a hospitalization
~~~
<h4>Primary care (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//primary_care/CPRD_pri_bladder.csv'>CPRD_pri_bladder.csv</a>)</h4>
<table>
<thead>
<tr>
<th>Read code</th>
<th>Read Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left">B490.00</td>
<td align="left">Malignant neoplasm of trigone of urinary bladder</td>
</tr>
<tr>
<td align="left">B491.00</td>
<td align="left">Malignant neoplasm of dome of urinary bladder</td>
</tr>
<tr>
<td align="left">B492.00</td>
<td align="left">Malignant neoplasm of lateral wall of urinary bladder</td>
</tr>
<tr>
<td align="left">B493.00</td>
<td align="left">Malignant neoplasm of anterior wall of urinary bladder</td>
</tr>
<tr>
<td align="left">B494.00</td>
<td align="left">Malignant neoplasm of posterior wall of urinary bladder</td>
</tr>
<tr>
<td align="left">B495.00</td>
<td align="left">Malignant neoplasm of bladder neck</td>
</tr>
<tr>
<td align="left">B496.00</td>
<td align="left">Malignant neoplasm of ureteric orifice</td>
</tr>
<tr>
<td align="left">B497.00</td>
<td align="left">Malignant neoplasm of urachus</td>
</tr>
<tr>
<td align="left">B498.00</td>
<td align="left">Local recurrence of malignant tumour of urinary bladder</td>
</tr>
<tr>
<td align="left">B49..00</td>
<td align="left">Malignant neoplasm of urinary bladder</td>
</tr>
<tr>
<td align="left">B49y000</td>
<td align="left">Malignant neoplasm, overlapping lesion of bladder</td>
</tr>
<tr>
<td align="left">B49y.00</td>
<td align="left">Malignant neoplasm of other site of urinary bladder</td>
</tr>
<tr>
<td align="left">B49z.00</td>
<td align="left">Malignant neoplasm of urinary bladder NOS</td>
</tr>
<tr>
<td align="left">ZV10511</td>
<td align="left">[V]Personal history of malignant neoplasm of bladder</td>
</tr>
</tbody>
</table>
<h4>Secondary care diagnoses (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//secondary_care/ICD_pri_bladder.csv'>ICD_pri_bladder.csv</a>)</h4>
<table>
<thead>
<tr>
<th>ICD-10 code</th>
<th>ICD-10 Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left">C67</td>
<td align="left">Malignant neoplasm of bladder</td>
</tr>
</tbody>
</table>
<h2>Primary Malignancy_Bone and articular cartilage</h2>
<h4>Implementation</h4>
~~~
At the specified date, a patient is defined as having had Primary Malignancy Bone and articular cartilage IF they meet the criteria for any of the following on or before the specified date. The earliest date on which the individual meets any of the following criteria on or before the specified date is defined as the first event date:
Primary care
1. Primary Malignancy_Bone and articular cartilage diagnosis or history of diagnosis during a consultation
OR
Secondary care
1. ALL diagnoses of Primary Malignancy_Bone and articular cartilage or history of diagnosis during a hospitalization
~~~
<h4>Primary care (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//primary_care/CPRD_pri_bone.csv'>CPRD_pri_bone.csv</a>)</h4>
<table>
<thead>
<tr>
<th>Read code</th>
<th>Read Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left">B300000</td>
<td align="left">Malignant neoplasm of ethmoid bone</td>
</tr>
<tr>
<td align="left">B300100</td>
<td align="left">Malignant neoplasm of frontal bone</td>
</tr>
<tr>
<td align="left">B300200</td>
<td align="left">Malignant neoplasm of malar bone</td>
</tr>
<tr>
<td align="left">B300300</td>
<td align="left">Malignant neoplasm of nasal bone</td>
</tr>
<tr>
<td align="left">B300400</td>
<td align="left">Malignant neoplasm of occipital bone</td>
</tr>
<tr>
<td align="left">B300500</td>
<td align="left">Malignant neoplasm of orbital bone</td>
</tr>
<tr>
<td align="left">B300600</td>
<td align="left">Malignant neoplasm of parietal bone</td>
</tr>
<tr>
<td align="left">B300700</td>
<td align="left">Malignant neoplasm of sphenoid bone</td>
</tr>
<tr>
<td align="left">B300800</td>
<td align="left">Malignant neoplasm of temporal bone</td>
</tr>
<tr>
<td align="left">B300900</td>
<td align="left">Malignant neoplasm of zygomatic bone</td>
</tr>
<tr>
<td align="left">B300A00</td>
<td align="left">Malignant neoplasm of maxilla</td>
</tr>
<tr>
<td align="left">B300.00</td>
<td align="left">Malignant neoplasm of bones of skull and face</td>
</tr>
<tr>
<td align="left">B300B00</td>
<td align="left">Malignant neoplasm of turbinate</td>
</tr>
<tr>
<td align="left">B300C00</td>
<td align="left">Malignant neoplasm of vomer</td>
</tr>
<tr>
<td align="left">B300z00</td>
<td align="left">Malignant neoplasm of bones of skull and face NOS</td>
</tr>
<tr>
<td align="left">B301.00</td>
<td align="left">Malignant neoplasm of mandible</td>
</tr>
<tr>
<td align="left">B302000</td>
<td align="left">Malignant neoplasm of cervical vertebra</td>
</tr>
<tr>
<td align="left">B302100</td>
<td align="left">Malignant neoplasm of thoracic vertebra</td>
</tr>
<tr>
<td align="left">B302200</td>
<td align="left">Malignant neoplasm of lumbar vertebra</td>
</tr>
<tr>
<td align="left">B302.00</td>
<td align="left">Malignant neoplasm of vertebral column</td>
</tr>
<tr>
<td align="left">B302z00</td>
<td align="left">Malignant neoplasm of vertebral column NOS</td>
</tr>
<tr>
<td align="left">B303000</td>
<td align="left">Malignant neoplasm of rib</td>
</tr>
<tr>
<td align="left">B303100</td>
<td align="left">Malignant neoplasm of sternum</td>
</tr>
<tr>
<td align="left">B303200</td>
<td align="left">Malignant neoplasm of clavicle</td>
</tr>
<tr>
<td align="left">B303300</td>
<td align="left">Malignant neoplasm of costal cartilage</td>
</tr>
<tr>
<td align="left">B303400</td>
<td align="left">Malignant neoplasm of costo-vertebral joint</td>
</tr>
<tr>
<td align="left">B303500</td>
<td align="left">Malignant neoplasm of xiphoid process</td>
</tr>
<tr>
<td align="left">B303.00</td>
<td align="left">Malignant neoplasm of ribs, sternum and clavicle</td>
</tr>
<tr>
<td align="left">B303z00</td>
<td align="left">Malignant neoplasm of rib, sternum and clavicle NOS</td>
</tr>
<tr>
<td align="left">B304000</td>
<td align="left">Malignant neoplasm of scapula</td>
</tr>
<tr>
<td align="left">B304100</td>
<td align="left">Malignant neoplasm of acromion</td>
</tr>
<tr>
<td align="left">B304200</td>
<td align="left">Malignant neoplasm of humerus</td>
</tr>
<tr>
<td align="left">B304300</td>
<td align="left">Malignant neoplasm of radius</td>
</tr>
<tr>
<td align="left">B304400</td>
<td align="left">Malignant neoplasm of ulna</td>
</tr>
<tr>
<td align="left">B304.00</td>
<td align="left">Malignant neoplasm of scapula and long bones of upper arm</td>
</tr>
<tr>
<td align="left">B304z00</td>
<td align="left">Malig neop of scapula and long bones of upper arm NOS</td>
</tr>
<tr>
<td align="left">B305000</td>
<td align="left">Malignant neoplasm of carpal bone - scaphoid</td>
</tr>
<tr>
<td align="left">B305100</td>
<td align="left">Malignant neoplasm of carpal bone - lunate</td>
</tr>
<tr>
<td align="left">B305A00</td>
<td align="left">Malignant neoplasm of third metacarpal bone</td>
</tr>
<tr>
<td align="left">B305.00</td>
<td align="left">Malignant neoplasm of hand bones</td>
</tr>
<tr>
<td align="left">B305.11</td>
<td align="left">Malignant neoplasm of carpal bones</td>
</tr>
<tr>
<td align="left">B305.12</td>
<td align="left">Malignant neoplasm of metacarpal bones</td>
</tr>
<tr>
<td align="left">B305C00</td>
<td align="left">Malignant neoplasm of fifth metacarpal bone</td>
</tr>
<tr>
<td align="left">B305D00</td>
<td align="left">Malignant neoplasm of phalanges of hand</td>
</tr>
<tr>
<td align="left">B305z00</td>
<td align="left">Malignant neoplasm of hand bones NOS</td>
</tr>
<tr>
<td align="left">B306000</td>
<td align="left">Malignant neoplasm of ilium</td>
</tr>
<tr>
<td align="left">B306100</td>
<td align="left">Malignant neoplasm of ischium</td>
</tr>
<tr>
<td align="left">B306200</td>
<td align="left">Malignant neoplasm of pubis</td>
</tr>
<tr>
<td align="left">B306300</td>
<td align="left">Malignant neoplasm of sacral vertebra</td>
</tr>
<tr>
<td align="left">B306400</td>
<td align="left">Malignant neoplasm of coccygeal vertebra</td>
</tr>
<tr>
<td align="left">B306500</td>
<td align="left">Malignant sacral teratoma</td>
</tr>
<tr>
<td align="left">B306.00</td>
<td align="left">Malignant neoplasm of pelvic bones, sacrum and coccyx</td>
</tr>
<tr>
<td align="left">B306z00</td>
<td align="left">Malignant neoplasm of pelvis, sacrum or coccyx NOS</td>
</tr>
<tr>
<td align="left">B307000</td>
<td align="left">Malignant neoplasm of femur</td>
</tr>
<tr>
<td align="left">B307100</td>
<td align="left">Malignant neoplasm of fibula</td>
</tr>
<tr>
<td align="left">B307200</td>
<td align="left">Malignant neoplasm of tibia</td>
</tr>
<tr>
<td align="left">B307.00</td>
<td align="left">Malignant neoplasm of long bones of leg</td>
</tr>
<tr>
<td align="left">B307z00</td>
<td align="left">Malignant neoplasm of long bones of leg NOS</td>
</tr>
<tr>
<td align="left">B308100</td>
<td align="left">Malignant neoplasm of talus</td>
</tr>
<tr>
<td align="left">B308200</td>
<td align="left">Malignant neoplasm of calcaneum</td>
</tr>
<tr>
<td align="left">B308300</td>
<td align="left">Malignant neoplasm of medial cuneiform</td>
</tr>
<tr>
<td align="left">B308800</td>
<td align="left">Malignant neoplasm of first metatarsal bone</td>
</tr>
<tr>
<td align="left">B308.00</td>
<td align="left">Malignant neoplasm of short bones of leg</td>
</tr>
<tr>
<td align="left">B308B00</td>
<td align="left">Malignant neoplasm of fourth metatarsal bone</td>
</tr>
<tr>
<td align="left">B308D00</td>
<td align="left">Malignant neoplasm of phalanges of foot</td>
</tr>
<tr>
<td align="left">B308z00</td>
<td align="left">Malignant neoplasm of short bones of leg NOS</td>
</tr>
<tr>
<td align="left">B30..00</td>
<td align="left">Malignant neoplasm of bone and articular cartilage</td>
</tr>
<tr>
<td align="left">B30W.00</td>
<td align="left">Malignant neoplasm/overlap lesion/bone+articulr cartilage</td>
</tr>
<tr>
<td align="left">B30X.00</td>
<td align="left">Malignant neoplasm/bones+articular cartilage/limb,unspfd</td>
</tr>
<tr>
<td align="left">B30z000</td>
<td align="left">Osteosarcoma</td>
</tr>
<tr>
<td align="left">B30z.00</td>
<td align="left">Malignant neoplasm of bone and articular cartilage NOS</td>
</tr>
<tr>
<td align="left">BBV1.00</td>
<td align="left">[M]Osteosarcoma NOS</td>
</tr>
<tr>
<td align="left">BBV1.11</td>
<td align="left">[M]Osteoblastic sarcoma</td>
</tr>
<tr>
<td align="left">BBV1.12</td>
<td align="left">[M]Osteochondrosarcoma</td>
</tr>
<tr>
<td align="left">BBV1.13</td>
<td align="left">[M]Osteogenic sarcoma NOS</td>
</tr>
<tr>
<td align="left">BBV2.00</td>
<td align="left">[M]Chondroblastic osteosarcoma</td>
</tr>
<tr>
<td align="left">BBV3.00</td>
<td align="left">[M]Fibroblastic osteosarcoma</td>
</tr>
<tr>
<td align="left">BBV4.00</td>
<td align="left">[M]Telangiectatic osteosarcoma</td>
</tr>
<tr>
<td align="left">BBV5.00</td>
<td align="left">[M]Osteosarcoma in Paget's disease of bone</td>
</tr>
<tr>
<td align="left">BBV9.00</td>
<td align="left">[M]Myxoid chondrosarcoma</td>
</tr>
<tr>
<td align="left">BBVA.00</td>
<td align="left">[M] Small cell osteosarcoma</td>
</tr>
<tr>
<td align="left">BBV..11</td>
<td align="left">[M]Juxtacortical osteogenic sarcoma</td>
</tr>
<tr>
<td align="left">BBV..12</td>
<td align="left">[M]Parosteal osteosarcoma</td>
</tr>
<tr>
<td align="left">BBV..13</td>
<td align="left">[M]Periosteal osteogenic sarcoma</td>
</tr>
<tr>
<td align="left">BBW4.00</td>
<td align="left">[M]Chondrosarcoma NOS</td>
</tr>
<tr>
<td align="left">BBW4.11</td>
<td align="left">[M]Fibrochondrosarcoma</td>
</tr>
<tr>
<td align="left">BBW6.00</td>
<td align="left">[M]Juxtacortical chondrosarcoma</td>
</tr>
<tr>
<td align="left">BBW8.00</td>
<td align="left">[M]Chondroblastoma, malignant</td>
</tr>
<tr>
<td align="left">BBW9.00</td>
<td align="left">[M]Mesenchymal chondrosarcoma</td>
</tr>
<tr>
<td align="left">BBX1.00</td>
<td align="left">[M]Giant cell tumour of bone, malignant</td>
</tr>
<tr>
<td align="left">BBX1.11</td>
<td align="left">[M]Giant cell bone sarcoma</td>
</tr>
<tr>
<td align="left">BBX1.12</td>
<td align="left">[M]Osteoclastoma, malignant</td>
</tr>
<tr>
<td align="left">BBY0.00</td>
<td align="left">[M]Ewing's sarcoma</td>
</tr>
<tr>
<td align="left">BBY0.11</td>
<td align="left">[M]Endothelial bone sarcoma</td>
</tr>
<tr>
<td align="left">BBY1.00</td>
<td align="left">[M]Adamantinoma of long bones</td>
</tr>
<tr>
<td align="left">BBY1.11</td>
<td align="left">[M]Tibial adamantinoma</td>
</tr>
<tr>
<td align="left">BBZ2.00</td>
<td align="left">[M]Odontogenic tumour, malignant</td>
</tr>
<tr>
<td align="left">BBZ2.11</td>
<td align="left">[M]Intraosseous carcinoma</td>
</tr>
<tr>
<td align="left">BBZC.00</td>
<td align="left">[M]Ameloblastic odontosarcoma</td>
</tr>
<tr>
<td align="left">BBZG.00</td>
<td align="left">[M]Ameloblastoma, malignant</td>
</tr>
<tr>
<td align="left">BBZG.11</td>
<td align="left">[M]Adamantinoma, malignant</td>
</tr>
<tr>
<td align="left">BBZN.00</td>
<td align="left">[M]Ameloblastic fibrosarcoma</td>
</tr>
<tr>
<td align="left">BBZN.11</td>
<td align="left">[M]Odontogenic fibrosarcoma</td>
</tr>
<tr>
<td align="left">Byu3100</td>
<td align="left">[X]Malignant neoplasm/bones+articular cartilage/limb,unspfd</td>
</tr>
<tr>
<td align="left">Byu3200</td>
<td align="left">[X]Malignant neoplasm/overlap lesion/bone+articulr cartilage</td>
</tr>
<tr>
<td align="left">Byu3300</td>
<td align="left">[X]Malignant neoplasm/bone+articular cartilage, unspecified</td>
</tr>
<tr>
<td align="left">Byu3.00</td>
<td align="left">[X]Malignant neoplasm of bone and articular cartilage</td>
</tr>
<tr>
<td align="left">ZV10y11</td>
<td align="left">[V]Personal history of malignant neoplasm of bone</td>
</tr>
</tbody>
</table>
<h4>Secondary care diagnoses (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//secondary_care/ICD_pri_bone.csv'>ICD_pri_bone.csv</a>)</h4>
<table>
<thead>
<tr>
<th>ICD-10 code</th>
<th>ICD-10 Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left">C40</td>
<td align="left">Malignant neoplasm of bone and articular cartilage of limbs</td>
</tr>
<tr>
<td align="left">C41</td>
<td align="left">Malignant neoplasm of bone and articular cartilage of other and unspecified sites</td>
</tr>
</tbody>
</table>
<h2>Primary Malignancy_Brain, Other CNS and Intracranial</h2>
<h4>Implementation</h4>
~~~
At the specified date, a patient is defined as having had Primary Malignancy Brain, Other CNS and Intracranial IF they meet the criteria for any of the following on or before the specified date. The earliest date on which the individual meets any of the following criteria on or before the specified date is defined as the first event date:
Primary care
1. Primary Malignancy_Brain, Other CNS and Intracranial diagnosis or history of diagnosis during a consultation
OR
Secondary care
1. ALL diagnoses of Primary Malignancy_Brain, Other CNS and Intracranial or history of diagnosis during a hospitalization
~~~
<h4>Primary care (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//primary_care/CPRD_pri_brain.csv'>CPRD_pri_brain.csv</a>)</h4>
<table>
<thead>
<tr>
<th>Read code</th>
<th>Read Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left">B510000</td>
<td align="left">Malignant neoplasm of basal ganglia</td>
</tr>
<tr>
<td align="left">B510100</td>
<td align="left">Malignant neoplasm of cerebral cortex</td>
</tr>
<tr>
<td align="left">B510300</td>
<td align="left">Malignant neoplasm of globus pallidus</td>
</tr>
<tr>
<td align="left">B510400</td>
<td align="left">Malignant neoplasm of hypothalamus</td>
</tr>
<tr>
<td align="left">B510500</td>
<td align="left">Malignant neoplasm of thalamus</td>
</tr>
<tr>
<td align="left">B510.00</td>
<td align="left">Malignant neoplasm cerebrum (excluding lobes and ventricles)</td>
</tr>
<tr>
<td align="left">B510z00</td>
<td align="left">Malignant neoplasm of cerebrum NOS</td>
</tr>
<tr>
<td align="left">B511.00</td>
<td align="left">Malignant neoplasm of frontal lobe</td>
</tr>
<tr>
<td align="left">B512000</td>
<td align="left">Malignant neoplasm of hippocampus</td>
</tr>
<tr>
<td align="left">B512.00</td>
<td align="left">Malignant neoplasm of temporal lobe</td>
</tr>
<tr>
<td align="left">B512z00</td>
<td align="left">Malignant neoplasm of temporal lobe NOS</td>
</tr>
<tr>
<td align="left">B513.00</td>
<td align="left">Malignant neoplasm of parietal lobe</td>
</tr>
<tr>
<td align="left">B514.00</td>
<td align="left">Malignant neoplasm of occipital lobe</td>
</tr>
<tr>
<td align="left">B515000</td>
<td align="left">Malignant neoplasm of choroid plexus</td>
</tr>
<tr>
<td align="left">B515.00</td>
<td align="left">Malignant neoplasm of cerebral ventricles</td>
</tr>
<tr>
<td align="left">B516.00</td>
<td align="left">Malignant neoplasm of cerebellum</td>
</tr>
<tr>
<td align="left">B517000</td>
<td align="left">Malignant neoplasm of cerebral peduncle</td>
</tr>
<tr>
<td align="left">B517100</td>
<td align="left">Malignant neoplasm of medulla oblongata</td>
</tr>
<tr>
<td align="left">B517200</td>
<td align="left">Malignant neoplasm of midbrain</td>
</tr>
<tr>
<td align="left">B517300</td>
<td align="left">Malignant neoplasm of pons</td>
</tr>
<tr>
<td align="left">B517.00</td>
<td align="left">Malignant neoplasm of brain stem</td>
</tr>
<tr>
<td align="left">B517z00</td>
<td align="left">Malignant neoplasm of brain stem NOS</td>
</tr>
<tr>
<td align="left">B51..00</td>
<td align="left">Malignant neoplasm of brain</td>
</tr>
<tr>
<td align="left">B51..11</td>
<td align="left">Cerebral tumour - malignant</td>
</tr>
<tr>
<td align="left">B51y000</td>
<td align="left">Malignant neoplasm of corpus callosum</td>
</tr>
<tr>
<td align="left">B51y200</td>
<td align="left">Malignant neoplasm, overlapping lesion of brain</td>
</tr>
<tr>
<td align="left">B51y.00</td>
<td align="left">Malignant neoplasm of other parts of brain</td>
</tr>
<tr>
<td align="left">B51yz00</td>
<td align="left">Malignant neoplasm of other part of brain NOS</td>
</tr>
<tr>
<td align="left">B51z.00</td>
<td align="left">Malignant neoplasm of brain NOS</td>
</tr>
<tr>
<td align="left">B520000</td>
<td align="left">Malignant neoplasm of olfactory bulb</td>
</tr>
<tr>
<td align="left">B520100</td>
<td align="left">Malignant neoplasm of optic nerve</td>
</tr>
<tr>
<td align="left">B520200</td>
<td align="left">Malignant neoplasm of acoustic nerve</td>
</tr>
<tr>
<td align="left">B520.00</td>
<td align="left">Malignant neoplasm of cranial nerves</td>
</tr>
<tr>
<td align="left">B520z00</td>
<td align="left">Malignant neoplasm of cranial nerves NOS</td>
</tr>
<tr>
<td align="left">B521200</td>
<td align="left">Malignant neoplasm of cerebral pia mater</td>
</tr>
<tr>
<td align="left">B521.00</td>
<td align="left">Malignant neoplasm of cerebral meninges</td>
</tr>
<tr>
<td align="left">B521z00</td>
<td align="left">Malignant neoplasm of cerebral meninges NOS</td>
</tr>
<tr>
<td align="left">B522.00</td>
<td align="left">Malignant neoplasm of spinal cord</td>
</tr>
<tr>
<td align="left">B523.00</td>
<td align="left">Malignant neoplasm of spinal meninges</td>
</tr>
<tr>
<td align="left">B523z00</td>
<td align="left">Malignant neoplasm of spinal meninges NOS</td>
</tr>
<tr>
<td align="left">B525.00</td>
<td align="left">Malignant neoplasm of cauda equina</td>
</tr>
<tr>
<td align="left">B52W.00</td>
<td align="left">Malig neopl, overlap lesion brain & other part of CNS</td>
</tr>
<tr>
<td align="left">B52X.00</td>
<td align="left">Malignant neoplasm of meninges, unspecified</td>
</tr>
<tr>
<td align="left">B542000</td>
<td align="left">Malignant neoplasm of pituitary gland</td>
</tr>
<tr>
<td align="left">B542100</td>
<td align="left">Malignant neoplasm of craniopharyngeal duct</td>
</tr>
<tr>
<td align="left">B542.00</td>
<td align="left">Malignant neoplasm pituitary gland and craniopharyngeal duct</td>
</tr>
<tr>
<td align="left">B542z00</td>
<td align="left">Malig neop pituitary gland or craniopharyngeal duct NOS</td>
</tr>
<tr>
<td align="left">B543.00</td>
<td align="left">Malignant neoplasm of pineal gland</td>
</tr>
<tr>
<td align="left">B544.00</td>
<td align="left">Malignant neoplasm of carotid body</td>
</tr>
<tr>
<td align="left">B545000</td>
<td align="left">Malignant neoplasm of glomus jugulare</td>
</tr>
<tr>
<td align="left">B545100</td>
<td align="left">Malignant neoplasm of aortic body</td>
</tr>
<tr>
<td align="left">B545200</td>
<td align="left">Malignant neoplasm of coccygeal body</td>
</tr>
<tr>
<td align="left">B545.00</td>
<td align="left">Malignant neoplasm of aortic body and other paraganglia</td>
</tr>
<tr>
<td align="left">B545z00</td>
<td align="left">Malignant neoplasm of aortic body or paraganglia NOS</td>
</tr>
<tr>
<td align="left">BBbB.00</td>
<td align="left">[M]Astrocytoma NOS</td>
</tr>
<tr>
<td align="left">BBbB.11</td>
<td align="left">[M]Astrocytic glioma</td>
</tr>
<tr>
<td align="left">BBbC.00</td>
<td align="left">[M]Astrocytoma, anaplastic type</td>
</tr>
<tr>
<td align="left">BBbE.00</td>
<td align="left">[M]Gemistocytic astrocytoma</td>
</tr>
<tr>
<td align="left">BBbF.00</td>
<td align="left">[M]Fibrillary astrocytoma</td>
</tr>
<tr>
<td align="left">BBbG.00</td>
<td align="left">[M]Pilocytic astrocytoma</td>
</tr>
<tr>
<td align="left">BBbG.11</td>
<td align="left">[M]Juvenile astrocytoma</td>
</tr>
<tr>
<td align="left">BBbG.12</td>
<td align="left">[M]Piloid astrocytoma</td>
</tr>
<tr>
<td align="left">BBbH.00</td>
<td align="left">[M]Spongioblastoma NOS</td>
</tr>
<tr>
<td align="left">BBbK.00</td>
<td align="left">[M]Astroblastoma</td>
</tr>
<tr>
<td align="left">BBbL.00</td>
<td align="left">[M]Glioblastoma NOS</td>
</tr>
<tr>
<td align="left">BBbL.11</td>
<td align="left">[M]Glioblastoma multiforme</td>
</tr>
<tr>
<td align="left">BBbM.00</td>
<td align="left">[M]Giant cell glioblastoma</td>
</tr>
<tr>
<td align="left">BBbQ.00</td>
<td align="left">[M]Oligodendroglioma NOS</td>
</tr>
<tr>
<td align="left">BBbR.00</td>
<td align="left">[M]Oligodendroglioma, anaplastic type</td>
</tr>
<tr>
<td align="left">BBbS.00</td>
<td align="left">[M]Oligodendroblastoma</td>
</tr>
<tr>
<td align="left">BBbT.00</td>
<td align="left">[M]Medulloblastoma NOS</td>
</tr>
<tr>
<td align="left">BBbU.00</td>
<td align="left">[M]Desmoplastic medulloblastoma</td>
</tr>
<tr>
<td align="left">BBbV.00</td>
<td align="left">[M]Medullomyoblastoma</td>
</tr>
<tr>
<td align="left">BBbW.00</td>
<td align="left">[M]Cerebellar sarcoma NOS</td>
</tr>
<tr>
<td align="left">BBbz.00</td>
<td align="left">[M]Glioma NOS</td>
</tr>
<tr>
<td align="left">BBbZ.00</td>
<td align="left">[M]Pleomorphic xanthoastrocytoma</td>
</tr>
<tr>
<td align="left">BBc2.00</td>
<td align="left">[M]Medulloepithelioma NOS</td>
</tr>
<tr>
<td align="left">BBc6.11</td>
<td align="left">[M]Glioneuroma</td>
</tr>
<tr>
<td align="left">BBc7.11</td>
<td align="left">[M]Neuroastrocytoma</td>
</tr>
<tr>
<td align="left">BBcA.00</td>
<td align="left">[M]Olfactory neurogenic tumour</td>
</tr>
<tr>
<td align="left">BBd2.00</td>
<td align="left">[M]Meningioma, malignant</td>
</tr>
<tr>
<td align="left">BBd2.12</td>
<td align="left">[M]Meningothelial sarcoma</td>
</tr>
<tr>
<td align="left">BBdA.00</td>
<td align="left">[M]Papillary meningioma</td>
</tr>
<tr>
<td align="left">ByuA000</td>
<td align="left">[X]Malignant neoplasm/other and unspecified cranial nerves</td>
</tr>
<tr>
<td align="left">ByuA100</td>
<td align="left">[X]Malignant neoplasm/central nervous system, unspecified</td>
</tr>
<tr>
<td align="left">ByuA200</td>
<td align="left">[X]Malignant neoplasm of meninges, unspecified</td>
</tr>
<tr>
<td align="left">ByuA300</td>
<td align="left">[X]Malig neopl, overlap lesion brain & other part of CNS</td>
</tr>
<tr>
<td align="left">ZV10y12</td>
<td align="left">[V]Personal history of malignant neoplasm of brain</td>
</tr>
</tbody>
</table>
<h4>Secondary care diagnoses (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//secondary_care/ICD_pri_brain.csv'>ICD_pri_brain.csv</a>)</h4>
<table>
<thead>
<tr>
<th>ICD-10 code</th>
<th>ICD-10 Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left">C70</td>
<td align="left">Malignant neoplasm of meninges</td>
</tr>
<tr>
<td align="left">C71</td>
<td align="left">Malignant neoplasm of brain</td>
</tr>
<tr>
<td align="left">C72</td>
<td align="left">Malignant neoplasm of spinal cord, cranial nerves and other parts of central nervous system</td>
</tr>
<tr>
<td align="left">C75.1</td>
<td align="left">Malignant neoplasm: Pituitary gland</td>
</tr>
<tr>
<td align="left">C75.2</td>
<td align="left">Malignant neoplasm: Craniopharyngeal duct</td>
</tr>
<tr>
<td align="left">C75.3</td>
<td align="left">Malignant neoplasm: Pineal gland</td>
</tr>
<tr>
<td align="left">C75.4</td>
<td align="left">Malignant neoplasm: Carotid body</td>
</tr>
<tr>
<td align="left">C75.5</td>
<td align="left">Malignant neoplasm: Aortic body and other paraganglia</td>
</tr>
</tbody>
</table>
<h2>Primary Malignancy_Breast</h2>
<h4>Implementation</h4>
~~~
At the specified date, a patient is defined as having had Primary Malignancy Breast IF they meet the criteria for any of the following on or before the specified date. The earliest date on which the individual meets any of the following criteria on or before the specified date is defined as the first event date:
Primary care
1. Primary Malignancy_Breast diagnosis or history of diagnosis during a consultation
OR
Secondary care
1. ALL diagnoses of Primary Malignancy_Breast or history of diagnosis during a hospitalization
~~~
<h4>Primary care (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//primary_care/CPRD_pri_breast.csv'>CPRD_pri_breast.csv</a>)</h4>
<table>
<thead>
<tr>
<th>Read code</th>
<th>Read Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left">B340000</td>
<td align="left">Malignant neoplasm of nipple of female breast</td>
</tr>
<tr>
<td align="left">B340100</td>
<td align="left">Malignant neoplasm of areola of female breast</td>
</tr>
<tr>
<td align="left">B340.00</td>
<td align="left">Malignant neoplasm of nipple and areola of female breast</td>
</tr>
<tr>
<td align="left">B340z00</td>
<td align="left">Malignant neoplasm of nipple or areola of female breast NOS</td>
</tr>
<tr>
<td align="left">B341.00</td>
<td align="left">Malignant neoplasm of central part of female breast</td>
</tr>
<tr>
<td align="left">B342.00</td>
<td align="left">Malignant neoplasm of upper-inner quadrant of female breast</td>
</tr>
<tr>
<td align="left">B343.00</td>
<td align="left">Malignant neoplasm of lower-inner quadrant of female breast</td>
</tr>
<tr>
<td align="left">B344.00</td>
<td align="left">Malignant neoplasm of upper-outer quadrant of female breast</td>
</tr>
<tr>
<td align="left">B345.00</td>
<td align="left">Malignant neoplasm of lower-outer quadrant of female breast</td>
</tr>
<tr>
<td align="left">B346.00</td>
<td align="left">Malignant neoplasm of axillary tail of female breast</td>
</tr>
<tr>
<td align="left">B347.00</td>
<td align="left">Malignant neoplasm, overlapping lesion of breast</td>
</tr>
<tr>
<td align="left">B34..00</td>
<td align="left">Malignant neoplasm of female breast</td>
</tr>
<tr>
<td align="left">B34..11</td>
<td align="left">Ca female breast</td>
</tr>
<tr>
<td align="left">B34y000</td>
<td align="left">Malignant neoplasm of ectopic site of female breast</td>
</tr>
<tr>
<td align="left">B34y.00</td>
<td align="left">Malignant neoplasm of other site of female breast</td>
</tr>
<tr>
<td align="left">B34yz00</td>
<td align="left">Malignant neoplasm of other site of female breast NOS</td>
</tr>
<tr>
<td align="left">B34z.00</td>
<td align="left">Malignant neoplasm of female breast NOS</td>
</tr>
<tr>
<td align="left">B350000</td>
<td align="left">Malignant neoplasm of nipple of male breast</td>
</tr>
<tr>
<td align="left">B350100</td>
<td align="left">Malignant neoplasm of areola of male breast</td>
</tr>
<tr>
<td align="left">B350.00</td>
<td align="left">Malignant neoplasm of nipple and areola of male breast</td>
</tr>
<tr>
<td align="left">B35..00</td>
<td align="left">Malignant neoplasm of male breast</td>
</tr>
<tr>
<td align="left">B35z000</td>
<td align="left">Malignant neoplasm of ectopic site of male breast</td>
</tr>
<tr>
<td align="left">B35z.00</td>
<td align="left">Malignant neoplasm of other site of male breast</td>
</tr>
<tr>
<td align="left">B35zz00</td>
<td align="left">Malignant neoplasm of male breast NOS</td>
</tr>
<tr>
<td align="left">B36..00</td>
<td align="left">Local recurrence of malignant tumour of breast</td>
</tr>
<tr>
<td align="left">B830000</td>
<td align="left">Lobular carcinoma in situ of breast</td>
</tr>
<tr>
<td align="left">B830100</td>
<td align="left">Intraductal carcinoma in situ of breast</td>
</tr>
<tr>
<td align="left">B830.00</td>
<td align="left">Carcinoma in situ of breast</td>
</tr>
<tr>
<td align="left">BB91.00</td>
<td align="left">[M]Infiltrating duct carcinoma</td>
</tr>
<tr>
<td align="left">BB91.11</td>
<td align="left">[M]Duct carcinoma NOS</td>
</tr>
<tr>
<td align="left">BB91000</td>
<td align="left">[M]Intraductal papillary adenocarcinoma with invasion</td>
</tr>
<tr>
<td align="left">BB96.00</td>
<td align="left">[M]Noninfiltrating intraductal papillary adenocarcinoma</td>
</tr>
<tr>
<td align="left">BB91100</td>
<td align="left">[M]Infiltrating duct and lobular carcinoma</td>
</tr>
<tr>
<td align="left">BB92.00</td>
<td align="left">[M]Comedocarcinoma, noninfiltrating</td>
</tr>
<tr>
<td align="left">BB93.00</td>
<td align="left">[M]Comedocarcinoma NOS</td>
</tr>
<tr>
<td align="left">BB94.00</td>
<td align="left">[M]Juvenile breast carcinoma</td>
</tr>
<tr>
<td align="left">BB94.11</td>
<td align="left">[M]Secretory breast carcinoma</td>
</tr>
<tr>
<td align="left">BB9J.00</td>
<td align="left">[M]Paget's disease, mammary</td>
</tr>
<tr>
<td align="left">BB9J.11</td>
<td align="left">[M]Paget's disease, breast</td>
</tr>
<tr>
<td align="left">BB9K000</td>
<td align="left">[M]Paget's disease and intraductal carcinoma of breast</td>
</tr>
<tr>
<td align="left">BB9K.00</td>
<td align="left">[M]Paget's disease and infiltrating breast duct carcinoma</td>
</tr>
<tr>
<td align="left">BB9M.00</td>
<td align="left">[M]Intracystic carcinoma NOS</td>
</tr>
<tr>
<td align="left">Byu6.00</td>
<td align="left">[X]Malignant neoplasm of breast</td>
</tr>
<tr>
<td align="left">ByuFG00</td>
<td align="left">[X]Other carcinoma in situ of breast</td>
</tr>
<tr>
<td align="left">ZV10300</td>
<td align="left">[V]Personal history of malignant neoplasm of breast</td>
</tr>
</tbody>
</table>
<h4>Secondary care diagnoses (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//secondary_care/ICD_pri_breast.csv'>ICD_pri_breast.csv</a>)</h4>
<table>
<thead>
<tr>
<th>ICD-10 code</th>
<th>ICD-10 Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left">C50</td>
<td align="left">Malignant neoplasm of breast</td>
</tr>
<tr>
<td align="left">D05</td>
<td align="left">Carcinoma in situ of breast</td>
</tr>
</tbody>
</table>
<h2>Primary Malignancy_Cervical</h2>
<h4>Implementation</h4>
~~~
At the specified date, a patient is defined as having had Primary Malignancy Cervical IF they meet the criteria for any of the following on or before the specified date. The earliest date on which the individual meets any of the following criteria on or before the specified date is defined as the first event date:
Primary care
1. Primary Malignancy_Cervical diagnosis or history of diagnosis during a consultation
OR
Secondary care
1. ALL diagnoses of Primary Malignancy_Cervical or history of diagnosis during a hospitalization
~~~
<h4>Primary care (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//primary_care/CPRD_pri_cervical.csv'>CPRD_pri_cervical.csv</a>)</h4>
<table>
<thead>
<tr>
<th>Read code</th>
<th>Read Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left">B410000</td>
<td align="left">Malignant neoplasm of endocervical canal</td>
</tr>
<tr>
<td align="left">B410100</td>
<td align="left">Malignant neoplasm of endocervical gland</td>
</tr>
<tr>
<td align="left">B410.00</td>
<td align="left">Malignant neoplasm of endocervix</td>
</tr>
<tr>
<td align="left">B410z00</td>
<td align="left">Malignant neoplasm of endocervix NOS</td>
</tr>
<tr>
<td align="left">B411.00</td>
<td align="left">Malignant neoplasm of exocervix</td>
</tr>
<tr>
<td align="left">B412.00</td>
<td align="left">Malignant neoplasm, overlapping lesion of cervix uteri</td>
</tr>
<tr>
<td align="left">B41..00</td>
<td align="left">Malignant neoplasm of cervix uteri</td>
</tr>
<tr>
<td align="left">B41..11</td>
<td align="left">Cervical carcinoma (uterus)</td>
</tr>
<tr>
<td align="left">B41y000</td>
<td align="left">Malignant neoplasm of cervical stump</td>
</tr>
<tr>
<td align="left">B41y100</td>
<td align="left">Malignant neoplasm of squamocolumnar junction of cervix</td>
</tr>
<tr>
<td align="left">B41y.00</td>
<td align="left">Malignant neoplasm of other site of cervix</td>
</tr>
<tr>
<td align="left">B41yz00</td>
<td align="left">Malignant neoplasm of other site of cervix NOS</td>
</tr>
<tr>
<td align="left">B41z.00</td>
<td align="left">Malignant neoplasm of cervix uteri NOS</td>
</tr>
<tr>
<td align="left">ZV10411</td>
<td align="left">[V]Personal history of malignant neoplasm of cervix uteri</td>
</tr>
</tbody>
</table>
<h4>Secondary care diagnoses (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//secondary_care/ICD_pri_cervical.csv'>ICD_pri_cervical.csv</a>)</h4>
<table>
<thead>
<tr>
<th>ICD-10 code</th>
<th>ICD-10 Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left">C53</td>
<td align="left">Malignant neoplasm of cervix uteri</td>
</tr>
</tbody>
</table>
<h2>Primary Malignancy_Kidney and Ureter</h2>
<h4>Implementation</h4>
~~~
At the specified date, a patient is defined as having had Primary Malignancy Kidney and ureter IF they meet the criteria for any of the following on or before the specified date. The earliest date on which the individual meets any of the following criteria on or before the specified date is defined as the first event date:
Primary care
1. Primary Malignancy_Kidney and ureter diagnosis or history of diagnosis during a consultation
OR
Secondary care
1. ALL diagnoses of Primary Malignancy_Kidney and ureter or history of diagnosis during a hospitalization
~~~
<h4>Primary care (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//primary_care/CPRD_pri_kidney.csv'>CPRD_pri_kidney.csv</a>)</h4>
<table>
<thead>
<tr>
<th>Read code</th>
<th>Read Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left">B4A0000</td>
<td align="left">Hypernephroma</td>
</tr>
<tr>
<td align="left">B4A0.00</td>
<td align="left">Malignant neoplasm of kidney parenchyma</td>
</tr>
<tr>
<td align="left">B4A1000</td>
<td align="left">Malignant neoplasm of renal calyces</td>
</tr>
<tr>
<td align="left">B4A1100</td>
<td align="left">Malignant neoplasm of ureteropelvic junction</td>
</tr>
<tr>
<td align="left">B4A1.00</td>
<td align="left">Malignant neoplasm of renal pelvis</td>
</tr>
<tr>
<td align="left">B4A1z00</td>
<td align="left">Malignant neoplasm of renal pelvis NOS</td>
</tr>
<tr>
<td align="left">B4A2.00</td>
<td align="left">Malignant neoplasm of ureter</td>
</tr>
<tr>
<td align="left">B4A..11</td>
<td align="left">Renal malignant neoplasm</td>
</tr>
<tr>
<td align="left">BB5a000</td>
<td align="left">[M]Renal cell carcinoma</td>
</tr>
<tr>
<td align="left">BB5a011</td>
<td align="left">[M]Grawitz tumour</td>
</tr>
<tr>
<td align="left">BB5a012</td>
<td align="left">[M]Hypernephroma</td>
</tr>
<tr>
<td align="left">ZV10512</td>
<td align="left">[V]Personal history of malignant neoplasm of kidney</td>
</tr>
<tr>
<td align="left">ZV10513</td>
<td align="left">[V]Personal history of malignant neoplasm of kidney</td>
</tr>
</tbody>
</table>
<h4>Secondary care diagnoses (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//secondary_care/ICD_pri_kidney.csv'>ICD_pri_kidney.csv</a>)</h4>
<table>
<thead>
<tr>
<th>ICD-10 code</th>
<th>ICD-10 Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left">C64</td>
<td align="left">Malignant neoplasm of kidney, except renal pelvis</td>
</tr>
<tr>
<td align="left">C65</td>
<td align="left">Malignant neoplasm of renal pelvis</td>
</tr>
<tr>
<td align="left">C66</td>
<td align="left">Malignant neoplasm of ureter</td>
</tr>
</tbody>
</table>
<h2>Primary Malignancy_Liver</h2>
<h4>Implementation</h4>
~~~
At the specified date, a patient is defined as having had Primary Malignancy Liver IF they meet the criteria for any of the following on or before the specified date. The earliest date on which the individual meets any of the following criteria on or before the specified date is defined as the first event date:
Primary care
1. Primary Malignancy_Liver diagnosis or history of diagnosis during a consultation
OR
Secondary care
1. ALL diagnoses of Primary Malignancy_Liver or history of diagnosis during a hospitalization
~~~
<h4>Primary care (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//primary_care/CPRD_pri_liver.csv'>CPRD_pri_liver.csv</a>)</h4>
<table>
<thead>
<tr>
<th>Read code</th>
<th>Read Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left">B150000</td>
<td align="left">Primary carcinoma of liver</td>
</tr>
<tr>
<td align="left">B150100</td>
<td align="left">Hepatoblastoma of liver</td>
</tr>
<tr>
<td align="left">B150200</td>
<td align="left">Primary angiosarcoma of liver</td>
</tr>
<tr>
<td align="left">B150300</td>
<td align="left">Hepatocellular carcinoma</td>
</tr>
<tr>
<td align="left">B150.00</td>
<td align="left">Primary malignant neoplasm of liver</td>
</tr>
<tr>
<td align="left">B150z00</td>
<td align="left">Primary malignant neoplasm of liver NOS</td>
</tr>
<tr>
<td align="left">B152.00</td>
<td align="left">Malignant neoplasm of liver unspecified</td>
</tr>
<tr>
<td align="left">BB5D500</td>
<td align="left">[M]Hepatocellular carcinoma NOS</td>
</tr>
<tr>
<td align="left">BB5D511</td>
<td align="left">[M]Hepatoma NOS</td>
</tr>
<tr>
<td align="left">BB5D512</td>
<td align="left">[M]Hepatoma, malignant</td>
</tr>
<tr>
<td align="left">BB5D513</td>
<td align="left">[M]Liver cell carcinoma</td>
</tr>
<tr>
<td align="left">BB5D700</td>
<td align="left">[M]Combined hepatocellular carcinoma and cholangiocarcinoma</td>
</tr>
<tr>
<td align="left">BB5D711</td>
<td align="left">[M]Hepatocholangiocarcinoma</td>
</tr>
<tr>
<td align="left">BB5D800</td>
<td align="left">[M]Hepatocellular carcinoma, fibrolamellar</td>
</tr>
<tr>
<td align="left">Byu1100</td>
<td align="left">[X]Other specified carcinomas of liver</td>
</tr>
<tr>
<td align="left">ZV10015</td>
<td align="left">[V]Personal history of malignant neoplasm of liver</td>
</tr>
</tbody>
</table>
<h4>Secondary care diagnoses (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//secondary_care/ICD_pri_liver.csv'>ICD_pri_liver.csv</a>)</h4>
<table>
<thead>
<tr>
<th>ICD-10 code</th>
<th>ICD-10 Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left">C22.0</td>
<td align="left">Malignant neoplasm: Liver cell carcinoma</td>
</tr>
<tr>
<td align="left">C22.2</td>
<td align="left">Malignant neoplasm: Hepatoblastoma</td>
</tr>
<tr>
<td align="left">C22.3</td>
<td align="left">Malignant neoplasm: Angiosarcoma of liver</td>
</tr>
<tr>
<td align="left">C22.4</td>
<td align="left">Malignant neoplasm: Other sarcomas of liver</td>
</tr>
<tr>
<td align="left">C22.7</td>
<td align="left">Malignant neoplasm: Other specified carcinomas of liver</td>
</tr>
<tr>
<td align="left">C22.9</td>
<td align="left">Malignant neoplasm: Liver, unspecified</td>
</tr>
</tbody>
</table>
<h2>Primary Malignancy_Lung and trachea</h2>
<h4>Implementation</h4>
~~~
At the specified date, a patient is defined as having had Primary Malignancy Lung and trachea IF they meet the criteria for any of the following on or before the specified date. The earliest date on which the individual meets any of the following criteria on or before the specified date is defined as the first event date:
Primary care
1. Primary Malignancy_Lung and trachea diagnosis or history of diagnosis during a consultation
OR
Secondary care
1. ALL diagnoses of Primary Malignancy_Lung and trachea or history of diagnosis during a hospitalization
~~~
<h4>Primary care (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//primary_care/CPRD_pri_lung.csv'>CPRD_pri_lung.csv</a>)</h4>
<table>
<thead>
<tr>
<th>Read code</th>
<th>Read Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left">B220100</td>
<td align="left">Malignant neoplasm of mucosa of trachea</td>
</tr>
<tr>
<td align="left">B220.00</td>
<td align="left">Malignant neoplasm of trachea</td>
</tr>
<tr>
<td align="left">B220z00</td>
<td align="left">Malignant neoplasm of trachea NOS</td>
</tr>
<tr>
<td align="left">B221000</td>
<td align="left">Malignant neoplasm of carina of bronchus</td>
</tr>
<tr>
<td align="left">B221100</td>
<td align="left">Malignant neoplasm of hilus of lung</td>
</tr>
<tr>
<td align="left">B221.00</td>
<td align="left">Malignant neoplasm of main bronchus</td>
</tr>
<tr>
<td align="left">B221z00</td>
<td align="left">Malignant neoplasm of main bronchus NOS</td>
</tr>
<tr>
<td align="left">B222000</td>
<td align="left">Malignant neoplasm of upper lobe bronchus</td>
</tr>
<tr>
<td align="left">B222100</td>
<td align="left">Malignant neoplasm of upper lobe of lung</td>
</tr>
<tr>
<td align="left">B222.00</td>
<td align="left">Malignant neoplasm of upper lobe, bronchus or lung</td>
</tr>
<tr>
<td align="left">B222.11</td>
<td align="left">Pancoast's syndrome</td>
</tr>
<tr>
<td align="left">B222z00</td>
<td align="left">Malignant neoplasm of upper lobe, bronchus or lung NOS</td>
</tr>
<tr>
<td align="left">B223000</td>
<td align="left">Malignant neoplasm of middle lobe bronchus</td>
</tr>
<tr>
<td align="left">B223100</td>
<td align="left">Malignant neoplasm of middle lobe of lung</td>
</tr>
<tr>
<td align="left">B223.00</td>
<td align="left">Malignant neoplasm of middle lobe, bronchus or lung</td>
</tr>
<tr>
<td align="left">B223z00</td>
<td align="left">Malignant neoplasm of middle lobe, bronchus or lung NOS</td>
</tr>
<tr>
<td align="left">B224000</td>
<td align="left">Malignant neoplasm of lower lobe bronchus</td>
</tr>
<tr>
<td align="left">B224100</td>
<td align="left">Malignant neoplasm of lower lobe of lung</td>
</tr>
<tr>
<td align="left">B224.00</td>
<td align="left">Malignant neoplasm of lower lobe, bronchus or lung</td>
</tr>
<tr>
<td align="left">B224z00</td>
<td align="left">Malignant neoplasm of lower lobe, bronchus or lung NOS</td>
</tr>
<tr>
<td align="left">B225.00</td>
<td align="left">Malignant neoplasm of overlapping lesion of bronchus & lung</td>
</tr>
<tr>
<td align="left">B22..00</td>
<td align="left">Malignant neoplasm of trachea, bronchus and lung</td>
</tr>
<tr>
<td align="left">B22y.00</td>
<td align="left">Malignant neoplasm of other sites of bronchus or lung</td>
</tr>
<tr>
<td align="left">B22z.00</td>
<td align="left">Malignant neoplasm of bronchus or lung NOS</td>
</tr>
<tr>
<td align="left">B22z.11</td>
<td align="left">Lung cancer</td>
</tr>
<tr>
<td align="left">BB5S200</td>
<td align="left">[M]Bronchiolo-alveolar adenocarcinoma</td>
</tr>
<tr>
<td align="left">BB5S211</td>
<td align="left">[M]Alveolar cell carcinoma</td>
</tr>
<tr>
<td align="left">BB5S212</td>
<td align="left">[M]Bronchiolar carcinoma</td>
</tr>
<tr>
<td align="left">BB5S400</td>
<td align="left">[M]Alveolar adenocarcinoma</td>
</tr>
<tr>
<td align="left">Byu2000</td>
<td align="left">[X]Malignant neoplasm of bronchus or lung, unspecified</td>
</tr>
<tr>
<td align="left">ZV10100</td>
<td align="left">[V]Personal history of malig neop of trachea/bronchus/lung</td>
</tr>
<tr>
<td align="left">ZV10111</td>
<td align="left">[V]Personal history of malignant neoplasm of bronchus</td>
</tr>
<tr>
<td align="left">ZV10112</td>
<td align="left">[V]Personal history of malignant neoplasm of lung</td>
</tr>
</tbody>
</table>
<h4>Secondary care diagnoses (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//secondary_care/ICD_pri_lung.csv'>ICD_pri_lung.csv</a>)</h4>
<table>
<thead>
<tr>
<th>ICD-10 code</th>
<th>ICD-10 Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left">C33</td>
<td align="left">Malignant neoplasm of trachea</td>
</tr>
<tr>
<td align="left">C34</td>
<td align="left">Malignant neoplasm of bronchus and lung</td>
</tr>
</tbody>
</table>
<h2>Primary Malignancy_Malignant Melanoma</h2>
<h4>Implementation</h4>
~~~
At the specified date, a patient is defined as having had Primary Malignancy Malignant Melanoma IF they meet the criteria for any of the following on or before the specified date. The earliest date on which the individual meets any of the following criteria on or before the specified date is defined as the first event date:
Primary care
1. Primary Malignancy_Malignant Melanoma diagnosis or history of diagnosis during a consultation
OR
Secondary care
1. ALL diagnoses of Primary Malignancy_Malignant Melanoma or history of diagnosis during a hospitalization
~~~
<h4>Primary care (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//primary_care/CPRD_pri_melanoma.csv'>CPRD_pri_melanoma.csv</a>)</h4>
<table>
<thead>
<tr>
<th>Read code</th>
<th>Read Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="right">1425000</td>
<td align="left">H/O Malignant melanoma</td>
</tr>
<tr>
<td align="left">4M3..00</td>
<td align="left">Breslow depth staging for melanoma</td>
</tr>
<tr>
<td align="left">4M70.00</td>
<td align="left">Clark melanoma level 1</td>
</tr>
<tr>
<td align="left">4M71.00</td>
<td align="left">Clark melanoma level 2</td>
</tr>
<tr>
<td align="left">4M72.00</td>
<td align="left">Clark melanoma level 3</td>
</tr>
<tr>
<td align="left">4M73.00</td>
<td align="left">Clark melanoma level 4</td>
</tr>
<tr>
<td align="left">4M74.00</td>
<td align="left">Clark melanoma level 5</td>
</tr>
<tr>
<td align="left">7G03J00</td>
<td align="left">Excision of melanoma</td>
</tr>
<tr>
<td align="left">B320.00</td>
<td align="left">Malignant melanoma of lip</td>
</tr>
<tr>
<td align="left">B321.00</td>
<td align="left">Malignant melanoma of eyelid including canthus</td>
</tr>
<tr>
<td align="left">B322000</td>
<td align="left">Malignant melanoma of auricle (ear)</td>
</tr>
<tr>
<td align="left">B322100</td>
<td align="left">Malignant melanoma of external auditory meatus</td>
</tr>
<tr>
<td align="left">B322.00</td>
<td align="left">Malignant melanoma of ear and external auricular canal</td>
</tr>
<tr>
<td align="left">B322z00</td>
<td align="left">Malignant melanoma of ear and external auricular canal NOS</td>
</tr>
<tr>
<td align="left">B323000</td>
<td align="left">Malignant melanoma of external surface of cheek</td>
</tr>
<tr>
<td align="left">B323100</td>
<td align="left">Malignant melanoma of chin</td>
</tr>
<tr>
<td align="left">B323200</td>
<td align="left">Malignant melanoma of eyebrow</td>
</tr>
<tr>
<td align="left">B323300</td>
<td align="left">Malignant melanoma of forehead</td>
</tr>
<tr>
<td align="left">B323400</td>
<td align="left">Malignant melanoma of external surface of nose</td>
</tr>
<tr>
<td align="left">B323500</td>
<td align="left">Malignant melanoma of temple</td>
</tr>
<tr>
<td align="left">B323.00</td>
<td align="left">Malignant melanoma of other and unspecified parts of face</td>
</tr>
<tr>
<td align="left">B323z00</td>
<td align="left">Malignant melanoma of face NOS</td>
</tr>
<tr>
<td align="left">B324000</td>
<td align="left">Malignant melanoma of scalp</td>
</tr>
<tr>
<td align="left">B324100</td>
<td align="left">Malignant melanoma of neck</td>
</tr>
<tr>
<td align="left">B324.00</td>
<td align="left">Malignant melanoma of scalp and neck</td>
</tr>
<tr>
<td align="left">B324z00</td>
<td align="left">Malignant melanoma of scalp and neck NOS</td>
</tr>
<tr>
<td align="left">B325000</td>
<td align="left">Malignant melanoma of axilla</td>
</tr>
<tr>
<td align="left">B325100</td>
<td align="left">Malignant melanoma of breast</td>
</tr>
<tr>
<td align="left">B325200</td>
<td align="left">Malignant melanoma of buttock</td>
</tr>
<tr>
<td align="left">B325300</td>
<td align="left">Malignant melanoma of groin</td>
</tr>
<tr>
<td align="left">B325400</td>
<td align="left">Malignant melanoma of perianal skin</td>
</tr>
<tr>
<td align="left">B325500</td>
<td align="left">Malignant melanoma of perineum</td>
</tr>
<tr>
<td align="left">B325600</td>
<td align="left">Malignant melanoma of umbilicus</td>
</tr>
<tr>
<td align="left">B325700</td>
<td align="left">Malignant melanoma of back</td>
</tr>
<tr>
<td align="left">B325800</td>
<td align="left">Malignant melanoma of chest wall</td>
</tr>
<tr>
<td align="left">B325.00</td>
<td align="left">Malignant melanoma of trunk (excluding scrotum)</td>
</tr>
<tr>
<td align="left">B325z00</td>
<td align="left">Malignant melanoma of trunk, excluding scrotum, NOS</td>
</tr>
<tr>
<td align="left">B326000</td>
<td align="left">Malignant melanoma of shoulder</td>
</tr>
<tr>
<td align="left">B326100</td>
<td align="left">Malignant melanoma of upper arm</td>
</tr>
<tr>
<td align="left">B326200</td>
<td align="left">Malignant melanoma of fore-arm</td>
</tr>
<tr>
<td align="left">B326300</td>
<td align="left">Malignant melanoma of hand</td>
</tr>
<tr>
<td align="left">B326400</td>
<td align="left">Malignant melanoma of finger</td>
</tr>
<tr>
<td align="left">B326500</td>
<td align="left">Malignant melanoma of thumb</td>
</tr>
<tr>
<td align="left">B326.00</td>
<td align="left">Malignant melanoma of upper limb and shoulder</td>
</tr>
<tr>
<td align="left">B326z00</td>
<td align="left">Malignant melanoma of upper limb or shoulder NOS</td>
</tr>
<tr>
<td align="left">B327000</td>
<td align="left">Malignant melanoma of hip</td>
</tr>
<tr>
<td align="left">B327100</td>
<td align="left">Malignant melanoma of thigh</td>
</tr>
<tr>
<td align="left">B327200</td>
<td align="left">Malignant melanoma of knee</td>
</tr>
<tr>
<td align="left">B327300</td>
<td align="left">Malignant melanoma of popliteal fossa area</td>
</tr>
<tr>
<td align="left">B327400</td>
<td align="left">Malignant melanoma of lower leg</td>
</tr>
<tr>
<td align="left">B327500</td>
<td align="left">Malignant melanoma of ankle</td>
</tr>
<tr>
<td align="left">B327600</td>
<td align="left">Malignant melanoma of heel</td>
</tr>
<tr>
<td align="left">B327700</td>
<td align="left">Malignant melanoma of foot</td>
</tr>
<tr>
<td align="left">B327800</td>
<td align="left">Malignant melanoma of toe</td>
</tr>
<tr>
<td align="left">B327900</td>
<td align="left">Malignant melanoma of great toe</td>
</tr>
<tr>
<td align="left">B327.00</td>
<td align="left">Malignant melanoma of lower limb and hip</td>
</tr>
<tr>
<td align="left">B327z00</td>
<td align="left">Malignant melanoma of lower limb or hip NOS</td>
</tr>
<tr>
<td align="left">B32..00</td>
<td align="left">Malignant melanoma of skin</td>
</tr>
<tr>
<td align="left">B32y000</td>
<td align="left">Overlapping malignant melanoma of skin</td>
</tr>
<tr>
<td align="left">B32y.00</td>
<td align="left">Malignant melanoma of other specified skin site</td>
</tr>
<tr>
<td align="left">B32z.00</td>
<td align="left">Malignant melanoma of skin NOS</td>
</tr>
<tr>
<td align="left">BBE1000</td>
<td align="left">[M]Malignant melanoma, regressing</td>
</tr>
<tr>
<td align="left">BBE1100</td>
<td align="left">[M]Desmoplastic melanoma, malignant</td>
</tr>
<tr>
<td align="left">BBE1.00</td>
<td align="left">[M]Malignant melanoma NOS</td>
</tr>
<tr>
<td align="left">BBE1.11</td>
<td align="left">[M]Melanocarcinoma</td>
</tr>
<tr>
<td align="left">BBE1.12</td>
<td align="left">[M]Melanoma NOS</td>
</tr>
<tr>
<td align="left">BBE1.13</td>
<td align="left">[M]Melanosarcoma NOS</td>
</tr>
<tr>
<td align="left">BBE2.00</td>
<td align="left">[M]Nodular melanoma</td>
</tr>
<tr>
<td align="left">BBE4.00</td>
<td align="left">[M]Balloon cell melanoma</td>
</tr>
<tr>
<td align="left">BBEA.00</td>
<td align="left">[M]Amelanotic melanoma</td>
</tr>
<tr>
<td align="left">BBEC.00</td>
<td align="left">[M]Malignant melanoma in junctional naevus</td>
</tr>
<tr>
<td align="left">BBEF.00</td>
<td align="left">[M]Hutchinson's melanotic freckle</td>
</tr>
<tr>
<td align="left">BBEF.11</td>
<td align="left">[M]Lentigo maligna</td>
</tr>
<tr>
<td align="left">BBEG000</td>
<td align="left">[M]Acral lentiginous melanoma, malignant</td>
</tr>
<tr>
<td align="left">BBEG.00</td>
<td align="left">[M]Malignant melanoma in Hutchinson's melanotic freckle</td>
</tr>
<tr>
<td align="left">BBEG.11</td>
<td align="left">[M]Lentigo maligna melanoma</td>
</tr>
<tr>
<td align="left">BBEH.00</td>
<td align="left">[M]Superficial spreading melanoma</td>
</tr>
<tr>
<td align="left">BBEM.00</td>
<td align="left">[M]Malignant melanoma in giant pigmented naevus</td>
</tr>
<tr>
<td align="left">BBEN.11</td>
<td align="left">[M]Juvenila melanoma</td>
</tr>
<tr>
<td align="left">BBEP.00</td>
<td align="left">[M]Epithelioid cell melanoma</td>
</tr>
<tr>
<td align="left">BBEQ.00</td>
<td align="left">[M]Spindle cell melanoma NOS</td>
</tr>
<tr>
<td align="left">BBES.00</td>
<td align="left">[M]Spindle cell melanoma, type B</td>
</tr>
<tr>
<td align="left">BBET.00</td>
<td align="left">[M]Mixed epithelioid and spindle melanoma</td>
</tr>
<tr>
<td align="left">Byu4000</td>
<td align="left">[X]Malignant melanoma of other+unspecified parts of face</td>
</tr>
<tr>
<td align="left">Byu4100</td>
<td align="left">[X]Malignant melanoma of skin, unspecified</td>
</tr>
</tbody>
</table>
<h4>Secondary care diagnoses (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//secondary_care/ICD_pri_melanoma.csv'>ICD_pri_melanoma.csv</a>)</h4>
<table>
<thead>
<tr>
<th>ICD-10 code</th>
<th>ICD-10 Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left">C43</td>
<td align="left">Malignant melanoma of skin</td>
</tr>
</tbody>
</table>
<h2>Primary Malignancy_Mesothelioma</h2>
<h4>Implementation</h4>
~~~
At the specified date, a patient is defined as having had Primary Malignancy Mesothelioma IF they meet the criteria for any of the following on or before the specified date. The earliest date on which the individual meets any of the following criteria on or before the specified date is defined as the first event date:
Primary care
1. Primary Malignancy_Mesothelioma diagnosis or history of diagnosis during a consultation
OR
Secondary care
1. ALL diagnoses of Primary Malignancy_Mesothelioma or history of diagnosis during a hospitalization
~~~
<h4>Primary care (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//primary_care/CPRD_pri_mesothelioma.csv'>CPRD_pri_mesothelioma.csv</a>)</h4>
<table>
<thead>
<tr>
<th>Read code</th>
<th>Read Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left">BBP1.00</td>
<td align="left">[M]Mesothelioma, malignant</td>
</tr>
<tr>
<td align="left">BBP3.11</td>
<td align="left">[M]Sarcomatoid mesothelioma</td>
</tr>
<tr>
<td align="left">BBP5.00</td>
<td align="left">[M]Epithelioid mesothelioma, malignant</td>
</tr>
<tr>
<td align="left">BBP7.00</td>
<td align="left">[M]Mesothelioma, biphasic type, malignant</td>
</tr>
</tbody>
</table>
<h4>Secondary care diagnoses (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//secondary_care/ICD_pri_mesothelioma.csv'>ICD_pri_mesothelioma.csv</a>)</h4>
<table>
<thead>
<tr>
<th>ICD-10 code</th>
<th>ICD-10 Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left">C45</td>
<td align="left">Mesothelioma</td>
</tr>
</tbody>
</table>
<h2>Primary Malignancy_Multiple independent sites</h2>
<h4>Implementation</h4>
~~~
At the specified date, a patient is defined as having had Primary Malignancy Multiple Independent Sites IF they meet the criteria for any of the following on or before the specified date. The earliest date on which the individual meets any of the following criteria on or before the specified date is defined as the first event date:
Primary care
1. Primary Malignancy_Multiple Independent Sites diagnosis or history of diagnosis during a consultation
OR
Secondary care
1. ALL diagnoses of Primary Malignancy_Multiple Independent Sites or history of diagnosis during a hospitalization
~~~
<h4>Primary care (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//primary_care/CPRD_pri_multindep.csv'>CPRD_pri_multindep.csv</a>)</h4>
<table>
<thead>
<tr>
<th>Read code</th>
<th>Read Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left">B592.00</td>
<td align="left">Malignant neoplasms of independent (primary) multiple sites</td>
</tr>
<tr>
<td align="left">ByuE000</td>
<td align="left">[X]Malignant neoplasms/independent(primary)multiple sites</td>
</tr>
<tr>
<td align="left">ByuE.00</td>
<td align="left">[X]Malignant neoplasms/independent (primary) multiple sites</td>
</tr>
</tbody>
</table>
<h4>Secondary care diagnoses (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//secondary_care/ICD_pri_multindep.csv'>ICD_pri_multindep.csv</a>)</h4>
<table>
<thead>
<tr>
<th>ICD-10 code</th>
<th>ICD-10 Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left">C97</td>
<td align="left">Malignant neoplasms of independent (primary) multiple sites</td>
</tr>
</tbody>
</table>
<h2>Primary Malignancy_Oesophageal</h2>
<h4>Implementation</h4>
~~~
At the specified date, a patient is defined as having had Primary Malignancy Oesophageal IF they meet the criteria for any of the following on or before the specified date. The earliest date on which the individual meets any of the following criteria on or before the specified date is defined as the first event date:
Primary care
1. Primary Malignancy_Oesophageal diagnosis or history of diagnosis during a consultation
OR
Secondary care
1. ALL diagnoses of Primary Malignancy_Oesophageal or history of diagnosis during a hospitalization
~~~
<h4>Primary care (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//primary_care/CPRD_pri_oesoph.csv'>CPRD_pri_oesoph.csv</a>)</h4>
<table>
<thead>
<tr>
<th>Read code</th>
<th>Read Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left">B100.00</td>
<td align="left">Malignant neoplasm of cervical oesophagus</td>
</tr>
<tr>
<td align="left">B101.00</td>
<td align="left">Malignant neoplasm of thoracic oesophagus</td>
</tr>
<tr>
<td align="left">B102.00</td>
<td align="left">Malignant neoplasm of abdominal oesophagus</td>
</tr>
<tr>
<td align="left">B103.00</td>
<td align="left">Malignant neoplasm of upper third of oesophagus</td>
</tr>
<tr>
<td align="left">B104.00</td>
<td align="left">Malignant neoplasm of middle third of oesophagus</td>
</tr>
<tr>
<td align="left">B105.00</td>
<td align="left">Malignant neoplasm of lower third of oesophagus</td>
</tr>
<tr>
<td align="left">B106.00</td>
<td align="left">Malignant neoplasm, overlapping lesion of oesophagus</td>
</tr>
<tr>
<td align="left">B107.00</td>
<td align="left">Siewert type I adenocarcinoma</td>
</tr>
<tr>
<td align="left">B10..00</td>
<td align="left">Malignant neoplasm of oesophagus</td>
</tr>
<tr>
<td align="left">B10y.00</td>
<td align="left">Malignant neoplasm of other specified part of oesophagus</td>
</tr>
<tr>
<td align="left">B10z.00</td>
<td align="left">Malignant neoplasm of oesophagus NOS</td>
</tr>
<tr>
<td align="left">B10z.11</td>
<td align="left">Oesophageal cancer</td>
</tr>
<tr>
<td align="left">ZV10016</td>
<td align="left">[V]Personal history of malignant neoplasm of oesophagus</td>
</tr>
</tbody>
</table>
<h4>Secondary care diagnoses (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//secondary_care/ICD_pri_oesoph.csv'>ICD_pri_oesoph.csv</a>)</h4>
<table>
<thead>
<tr>
<th>ICD-10 code</th>
<th>ICD-10 Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left">C15</td>
<td align="left">Malignant neoplasm of oesophagus</td>
</tr>
</tbody>
</table>
<h2>Primary Malignancy_Oro-pharyngeal</h2>
<h4>Implementation</h4>
~~~
At the specified date, a patient is defined as having had Primary Malignancy Oropharyngeal IF they meet the criteria for any of the following on or before the specified date. The earliest date on which the individual meets any of the following criteria on or before the specified date is defined as the first event date:
Primary care
1. Primary Malignancy_Oropharyngeal diagnosis or history of diagnosis during a consultation
OR
Secondary care
1. ALL diagnoses of Primary Malignancy_Oropharyngeal or history of diagnosis during a hospitalization
~~~
<h4>Primary care (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//primary_care/CPRD_pri_oroph.csv'>CPRD_pri_oroph.csv</a>)</h4>
<table>
<thead>
<tr>
<th>Read code</th>
<th>Read Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left">B000000</td>
<td align="left">Malignant neoplasm of upper lip, external</td>
</tr>
<tr>
<td align="left">B000100</td>
<td align="left">Malignant neoplasm of upper lip, lipstick area</td>
</tr>
<tr>
<td align="left">B000.00</td>
<td align="left">Malignant neoplasm of upper lip, vermilion border</td>
</tr>
<tr>
<td align="left">B000z00</td>
<td align="left">Malignant neoplasm of upper lip, vermilion border NOS</td>
</tr>
<tr>
<td align="left">B001000</td>
<td align="left">Malignant neoplasm of lower lip, external</td>
</tr>
<tr>
<td align="left">B001100</td>
<td align="left">Malignant neoplasm of lower lip, lipstick area</td>
</tr>
<tr>
<td align="left">B001.00</td>
<td align="left">Malignant neoplasm of lower lip, vermilion border</td>
</tr>
<tr>
<td align="left">B001z00</td>
<td align="left">Malignant neoplasm of lower lip, vermilion border NOS</td>
</tr>
<tr>
<td align="left">B002100</td>
<td align="left">Malignant neoplasm of upper lip, frenulum</td>
</tr>
<tr>
<td align="left">B002200</td>
<td align="left">Malignant neoplasm of upper lip, mucosa</td>
</tr>
<tr>
<td align="left">B002300</td>
<td align="left">Malignant neoplasm of upper lip, oral aspect</td>
</tr>
<tr>
<td align="left">B002.00</td>
<td align="left">Malignant neoplasm of upper lip, inner aspect</td>
</tr>
<tr>
<td align="left">B002z00</td>
<td align="left">Malignant neoplasm of upper lip, inner aspect NOS</td>
</tr>
<tr>
<td align="left">B003000</td>
<td align="left">Malignant neoplasm of lower lip, buccal aspect</td>
</tr>
<tr>
<td align="left">B003100</td>
<td align="left">Malignant neoplasm of lower lip, frenulum</td>
</tr>
<tr>
<td align="left">B003200</td>
<td align="left">Malignant neoplasm of lower lip, mucosa</td>
</tr>
<tr>
<td align="left">B003300</td>
<td align="left">Malignant neoplasm of lower lip, oral aspect</td>
</tr>
<tr>
<td align="left">B003.00</td>
<td align="left">Malignant neoplasm of lower lip, inner aspect</td>
</tr>
<tr>
<td align="left">B003z00</td>
<td align="left">Malignant neoplasm of lower lip, inner aspect NOS</td>
</tr>
<tr>
<td align="left">B004000</td>
<td align="left">Malignant neoplasm of lip unspecified, buccal aspect</td>
</tr>
<tr>
<td align="left">B004200</td>
<td align="left">Malignant neoplasm of lip unspecified, mucosa</td>
</tr>
<tr>
<td align="left">B004300</td>
<td align="left">Malignant neoplasm of lip, oral aspect</td>
</tr>
<tr>
<td align="left">B004.00</td>
<td align="left">Malignant neoplasm of lip unspecified, inner aspect</td>
</tr>
<tr>
<td align="left">B005.00</td>
<td align="left">Malignant neoplasm of commissure of lip</td>
</tr>
<tr>
<td align="left">B006.00</td>
<td align="left">Malignant neoplasm of overlapping lesion of lip</td>
</tr>
<tr>
<td align="left">B007.00</td>
<td align="left">Malignant neoplasm of lip, unspecified</td>
</tr>
<tr>
<td align="left">B00..00</td>
<td align="left">Malignant neoplasm of lip</td>
</tr>
<tr>
<td align="left">B00..11</td>
<td align="left">Carcinoma of lip</td>
</tr>
<tr>
<td align="left">B00z000</td>
<td align="left">Malignant neoplasm of lip, unspecified, external</td>
</tr>
<tr>
<td align="left">B00z100</td>
<td align="left">Malignant neoplasm of lip, unspecified, lipstick area</td>
</tr>
<tr>
<td align="left">B00zz00</td>
<td align="left">Malignant neoplasm of lip, vermilion border NOS</td>
</tr>
<tr>
<td align="left">B010000</td>
<td align="left">Malignant neoplasm of base of tongue dorsal surface</td>
</tr>
<tr>
<td align="left">B010.00</td>
<td align="left">Malignant neoplasm of base of tongue</td>
</tr>
<tr>
<td align="left">B010.11</td>
<td align="left">Malignant neoplasm of posterior third of tongue</td>
</tr>
<tr>
<td align="left">B010z00</td>
<td align="left">Malignant neoplasm of fixed part of tongue NOS</td>
</tr>
<tr>
<td align="left">B011100</td>
<td align="left">Malignant neoplasm of midline of tongue</td>
</tr>
<tr>
<td align="left">B011.00</td>
<td align="left">Malignant neoplasm of dorsal surface of tongue</td>
</tr>
<tr>
<td align="left">B011z00</td>
<td align="left">Malignant neoplasm of dorsum of tongue NOS</td>
</tr>
<tr>
<td align="left">B012.00</td>
<td align="left">Malignant neoplasm of tongue, tip and lateral border</td>
</tr>
<tr>
<td align="left">B013000</td>
<td align="left">Malignant neoplasm of anterior 2/3 of tongue ventral surface</td>
</tr>
<tr>
<td align="left">B013100</td>
<td align="left">Malignant neoplasm of frenulum linguae</td>
</tr>
<tr>
<td align="left">B013.00</td>
<td align="left">Malignant neoplasm of ventral surface of tongue</td>
</tr>
<tr>
<td align="left">B013z00</td>
<td align="left">Malignant neoplasm of ventral tongue surface NOS</td>
</tr>
<tr>
<td align="left">B014.00</td>
<td align="left">Malignant neoplasm of anterior 2/3 of tongue unspecified</td>
</tr>
<tr>
<td align="left">B015.00</td>
<td align="left">Malignant neoplasm of tongue, junctional zone</td>
</tr>
<tr>
<td align="left">B016.00</td>
<td align="left">Malignant neoplasm of lingual tonsil</td>
</tr>
<tr>
<td align="left">B017.00</td>
<td align="left">Malignant overlapping lesion of tongue</td>
</tr>
<tr>
<td align="left">B01..00</td>
<td align="left">Malignant neoplasm of tongue</td>
</tr>
<tr>
<td align="left">B01y.00</td>
<td align="left">Malignant neoplasm of other sites of tongue</td>
</tr>
<tr>
<td align="left">B01z.00</td>
<td align="left">Malignant neoplasm of tongue NOS</td>
</tr>
<tr>
<td align="left">B020.00</td>
<td align="left">Malignant neoplasm of parotid gland</td>
</tr>
<tr>
<td align="left">B021.00</td>
<td align="left">Malignant neoplasm of submandibular gland</td>
</tr>
<tr>
<td align="left">B022.00</td>
<td align="left">Malignant neoplasm of sublingual gland</td>
</tr>
<tr>
<td align="left">B02..00</td>
<td align="left">Malignant neoplasm of major salivary glands</td>
</tr>
<tr>
<td align="left">B02y.00</td>
<td align="left">Malignant neoplasm of other major salivary glands</td>
</tr>
<tr>
<td align="left">B02z.00</td>
<td align="left">Malignant neoplasm of major salivary gland NOS</td>
</tr>
<tr>
<td align="left">B030.00</td>
<td align="left">Malignant neoplasm of upper gum</td>
</tr>
<tr>
<td align="left">B031.00</td>
<td align="left">Malignant neoplasm of lower gum</td>
</tr>
<tr>
<td align="left">B03..00</td>
<td align="left">Malignant neoplasm of gum</td>
</tr>
<tr>
<td align="left">B03y.00</td>
<td align="left">Malignant neoplasm of other sites of gum</td>
</tr>
<tr>
<td align="left">B03z.00</td>
<td align="left">Malignant neoplasm of gum NOS</td>
</tr>
<tr>
<td align="left">B040.00</td>
<td align="left">Malignant neoplasm of anterior portion of floor of mouth</td>
</tr>
<tr>
<td align="left">B041.00</td>
<td align="left">Malignant neoplasm of lateral portion of floor of mouth</td>
</tr>
<tr>
<td align="left">B042.00</td>
<td align="left">Malignant neoplasm, overlapping lesion of floor of mouth</td>
</tr>
<tr>
<td align="left">B04..00</td>
<td align="left">Malignant neoplasm of floor of mouth</td>
</tr>
<tr>
<td align="left">B04y.00</td>
<td align="left">Malignant neoplasm of other sites of floor of mouth</td>
</tr>
<tr>
<td align="left">B04z.00</td>
<td align="left">Malignant neoplasm of floor of mouth NOS</td>
</tr>
<tr>
<td align="left">B050.00</td>
<td align="left">Malignant neoplasm of cheek mucosa</td>
</tr>
<tr>
<td align="left">B050.11</td>
<td align="left">Malignant neoplasm of buccal mucosa</td>
</tr>
<tr>
<td align="left">B051000</td>
<td align="left">Malignant neoplasm of upper buccal sulcus</td>
</tr>
<tr>
<td align="left">B051100</td>
<td align="left">Malignant neoplasm of lower buccal sulcus</td>
</tr>
<tr>
<td align="left">B051.00</td>
<td align="left">Malignant neoplasm of vestibule of mouth</td>
</tr>
<tr>
<td align="left">B052.00</td>
<td align="left">Malignant neoplasm of hard palate</td>
</tr>
<tr>
<td align="left">B053.00</td>
<td align="left">Malignant neoplasm of soft palate</td>
</tr>
<tr>
<td align="left">B054.00</td>
<td align="left">Malignant neoplasm of uvula</td>
</tr>
<tr>
<td align="left">B055000</td>
<td align="left">Malignant neoplasm of junction of hard and soft palate</td>
</tr>
<tr>
<td align="left">B055100</td>
<td align="left">Malignant neoplasm of roof of mouth</td>
</tr>
<tr>
<td align="left">B055.00</td>
<td align="left">Malignant neoplasm of palate unspecified</td>
</tr>
<tr>
<td align="left">B055z00</td>
<td align="left">Malignant neoplasm of palate NOS</td>
</tr>
<tr>
<td align="left">B056.00</td>
<td align="left">Malignant neoplasm of retromolar area</td>
</tr>
<tr>
<td align="left">B05..00</td>
<td align="left">Malignant neoplasm of other and unspecified parts of mouth</td>
</tr>
<tr>
<td align="left">B05y.00</td>
<td align="left">Malignant neoplasm of other specified mouth parts</td>
</tr>
<tr>
<td align="left">B05z.00</td>
<td align="left">Malignant neoplasm of mouth NOS</td>
</tr>
<tr>
<td align="left">B060000</td>
<td align="left">Malignant neoplasm of faucial tonsil</td>
</tr>
<tr>
<td align="left">B060100</td>
<td align="left">Malignant neoplasm of palatine tonsil</td>
</tr>
<tr>
<td align="left">B060200</td>
<td align="left">Malignant neoplasm of overlapping lesion of tonsil</td>
</tr>
<tr>
<td align="left">B060.00</td>
<td align="left">Malignant neoplasm of tonsil</td>
</tr>
<tr>
<td align="left">B060z00</td>
<td align="left">Malignant neoplasm tonsil NOS</td>
</tr>
<tr>
<td align="left">B061.00</td>
<td align="left">Malignant neoplasm of tonsillar fossa</td>
</tr>
<tr>
<td align="left">B062000</td>
<td align="left">Malignant neoplasm of faucial pillar</td>
</tr>
<tr>
<td align="left">B062100</td>
<td align="left">Malignant neoplasm of glossopalatine fold</td>
</tr>
<tr>
<td align="left">B062200</td>
<td align="left">Malignant neoplasm of palatoglossal arch</td>
</tr>
<tr>
<td align="left">B062300</td>
<td align="left">Malignant neoplasm of palatopharyngeal arch</td>
</tr>
<tr>
<td align="left">B062.00</td>
<td align="left">Malignant neoplasm of tonsillar pillar</td>
</tr>
<tr>
<td align="left">B062z00</td>
<td align="left">Malignant neoplasm of tonsillar fossa NOS</td>
</tr>
<tr>
<td align="left">B063.00</td>
<td align="left">Malignant neoplasm of vallecula</td>
</tr>
<tr>
<td align="left">B064000</td>
<td align="left">Malignant neoplasm of epiglottis, free border</td>
</tr>
<tr>
<td align="left">B064100</td>
<td align="left">Malignant neoplasm of glossoepiglottic fold</td>
</tr>
<tr>
<td align="left">B064.00</td>
<td align="left">Malignant neoplasm of anterior epiglottis</td>
</tr>
<tr>
<td align="left">B064z00</td>
<td align="left">Malignant neoplasm of anterior epiglottis NOS</td>
</tr>
<tr>
<td align="left">B065.00</td>
<td align="left">Malignant neoplasm of junctional region of epiglottis</td>
</tr>
<tr>
<td align="left">B066.00</td>
<td align="left">Malignant neoplasm of lateral wall of oropharynx</td>
</tr>
<tr>
<td align="left">B067.00</td>
<td align="left">Malignant neoplasm of posterior wall of oropharynx</td>
</tr>
<tr>
<td align="left">B06..00</td>
<td align="left">Malignant neoplasm of oropharynx</td>
</tr>
<tr>
<td align="left">B06y.00</td>
<td align="left">Malignant neoplasm of oropharynx, other specified sites</td>
</tr>
<tr>
<td align="left">B06yz00</td>
<td align="left">Malignant neoplasm of other specified site of oropharynx NOS</td>
</tr>
<tr>
<td align="left">B06z.00</td>
<td align="left">Malignant neoplasm of oropharynx NOS</td>
</tr>
<tr>
<td align="left">B070.00</td>
<td align="left">Malignant neoplasm of roof of nasopharynx</td>
</tr>
<tr>
<td align="left">B071000</td>
<td align="left">Malignant neoplasm of adenoid</td>
</tr>
<tr>
<td align="left">B071100</td>
<td align="left">Malignant neoplasm of pharyngeal tonsil</td>
</tr>
<tr>
<td align="left">B071.00</td>
<td align="left">Malignant neoplasm of posterior wall of nasopharynx</td>
</tr>
<tr>
<td align="left">B071z00</td>
<td align="left">Malignant neoplasm of posterior wall of nasopharynx NOS</td>
</tr>
<tr>
<td align="left">B072000</td>
<td align="left">Malignant neoplasm of pharyngeal recess</td>
</tr>
<tr>
<td align="left">B072.00</td>
<td align="left">Malignant neoplasm of lateral wall of nasopharynx</td>
</tr>
<tr>
<td align="left">B072z00</td>
<td align="left">Malignant neoplasm of lateral wall of nasopharynx NOS</td>
</tr>
<tr>
<td align="left">B073100</td>
<td align="left">Malignant neoplasm of nasopharyngeal soft palate surface</td>
</tr>
<tr>
<td align="left">B073200</td>
<td align="left">Malignant neoplasm posterior margin nasal septum and choanae</td>
</tr>
<tr>
<td align="left">B073.00</td>
<td align="left">Malignant neoplasm of anterior wall of nasopharynx</td>
</tr>
<tr>
<td align="left">B073z00</td>
<td align="left">Malignant neoplasm of anterior wall of nasopharynx NOS</td>
</tr>
<tr>
<td align="left">B074.00</td>
<td align="left">Malignant neoplasm, overlapping lesion of nasopharynx</td>
</tr>
<tr>
<td align="left">B07..00</td>
<td align="left">Malignant neoplasm of nasopharynx</td>
</tr>
<tr>
<td align="left">B07y.00</td>
<td align="left">Malignant neoplasm of other specified site of nasopharynx</td>
</tr>
<tr>
<td align="left">B07z.00</td>
<td align="left">Malignant neoplasm of nasopharynx NOS</td>
</tr>
<tr>
<td align="left">B080.00</td>
<td align="left">Malignant neoplasm of postcricoid region</td>
</tr>
<tr>
<td align="left">B081.00</td>
<td align="left">Malignant neoplasm of pyriform sinus</td>
</tr>
<tr>
<td align="left">B082.00</td>
<td align="left">Malignant neoplasm aryepiglottic fold, hypopharyngeal aspect</td>
</tr>
<tr>
<td align="left">B083.00</td>
<td align="left">Malignant neoplasm of posterior pharynx</td>
</tr>
<tr>
<td align="left">B08..00</td>
<td align="left">Malignant neoplasm of hypopharynx</td>
</tr>
<tr>
<td align="left">B08y.00</td>
<td align="left">Malignant neoplasm of other specified hypopharyngeal site</td>
</tr>
<tr>
<td align="left">B08z.00</td>
<td align="left">Malignant neoplasm of hypopharynx NOS</td>
</tr>
<tr>
<td align="left">B0...00</td>
<td align="left">Malignant neoplasm of lip, oral cavity and pharynx</td>
</tr>
<tr>
<td align="left">B0...11</td>
<td align="left">Carcinoma of lip, oral cavity and pharynx</td>
</tr>
<tr>
<td align="left">B0z0.00</td>
<td align="left">Malignant neoplasm of pharynx unspecified</td>
</tr>
<tr>
<td align="left">B0z1.00</td>
<td align="left">Malignant neoplasm of Waldeyer's ring</td>
</tr>
<tr>
<td align="left">B0z2.00</td>
<td align="left">Malignant neoplasm of laryngopharynx</td>
</tr>
<tr>
<td align="left">B0z..00</td>
<td align="left">Malig neop other/ill-defined sites lip, oral cavity, pharynx</td>
</tr>
<tr>
<td align="left">B0zy.00</td>
<td align="left">Malignant neoplasm of other sites lip, oral cavity, pharynx</td>
</tr>
<tr>
<td align="left">B0zz.00</td>
<td align="left">Malignant neoplasm of lip, oral cavity and pharynx NOS</td>
</tr>
<tr>
<td align="left">BB5y000</td>
<td align="left">[M]Basal cell adenocarcinoma</td>
</tr>
<tr>
<td align="left">Byu0.00</td>
<td align="left">[X]Malignant neoplasm of lip, oral cavity and pharynx</td>
</tr>
<tr>
<td align="left">ZV10019</td>
<td align="left">[V]Personal history of malignant neoplasm of tongue</td>
</tr>
<tr>
<td align="left">ZV10y16</td>
<td align="left">[V]Personal history of malignant neoplasm of tongue</td>
</tr>
</tbody>
</table>
<h4>Secondary care diagnoses (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//secondary_care/ICD_pri_oroph.csv'>ICD_pri_oroph.csv</a>)</h4>
<table>
<thead>
<tr>
<th>ICD-10 code</th>
<th>ICD-10 Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left">C00</td>
<td align="left">Malignant neoplasm of lip</td>
</tr>
<tr>
<td align="left">C01</td>
<td align="left">Malignant neoplasm of base of tongue</td>
</tr>
<tr>
<td align="left">C02</td>
<td align="left">Malignant neoplasm of other and unspecified parts of tongue</td>
</tr>
<tr>
<td align="left">C03</td>
<td align="left">Malignant neoplasm of gum</td>
</tr>
<tr>
<td align="left">C04</td>
<td align="left">Malignant neoplasm of floor of mouth</td>
</tr>
<tr>
<td align="left">C05</td>
<td align="left">Malignant neoplasm of palate</td>
</tr>
<tr>
<td align="left">C06</td>
<td align="left">Malignant neoplasm of other and unspecified parts of mouth</td>
</tr>
<tr>
<td align="left">C07</td>
<td align="left">Malignant neoplasm of parotid gland</td>
</tr>
<tr>
<td align="left">C08</td>
<td align="left">Malignant neoplasm of other and unspecified major salivary glands</td>
</tr>
<tr>
<td align="left">C09</td>
<td align="left">Malignant neoplasm of tonsil</td>
</tr>
<tr>
<td align="left">C10</td>
<td align="left">Malignant neoplasm of oropharynx</td>
</tr>
<tr>
<td align="left">C11</td>
<td align="left">Malignant neoplasm of nasopharynx</td>
</tr>
<tr>
<td align="left">C12</td>
<td align="left">Malignant neoplasm of piriform sinus</td>
</tr>
<tr>
<td align="left">C13</td>
<td align="left">Malignant neoplasm of hypopharynx</td>
</tr>
<tr>
<td align="left">C14</td>
<td align="left">Malignant neoplasm of other and ill-defined sites in the lip, oral cavity and pharynx</td>
</tr>
</tbody>
</table>
<h2>Primary Malignancy_Other Organs</h2>
<h4>Implementation</h4>
~~~
At the specified date, a patient is defined as having had Primary Malignancy Other organs IF they meet the criteria for any of the following on or before the specified date. The earliest date on which the individual meets any of the following criteria on or before the specified date is defined as the first event date:
Primary care
1. Primary Malignancy Other organs diagnosis or history of diagnosis during a consultation
OR
2. Primary Malignancy Other organs possible diagnosis during a consultation IF NO record satisfying criteria for Primary Malignancy of any other organ in this document OR Haematological Malignancy (Hodgkin Lymphoma, Non-Hodgkin Lymphoma, Multiple Myeloma, Leukaemia)
Secondary care
1. ALL diagnoses of Primary Malignancy Other organs or history of diagnosis during a hospitalization
OR
2. ALL possible diagnosis of Primary Malignancy_Other organs during a hospitalization IF NO record satisfying criteria for Primary Malignancy of any other organ in this document OR Haematological Malignancy (Hodgkin Lymphoma, Non-Hodgkin Lymphoma, Multiple Myeloma, Leukaemia)
~~~
<h4>Primary care (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//primary_care/CPRD_pri_other.csv'>CPRD_pri_other.csv</a>)</h4>
<table>
<thead>
<tr>
<th>Read code</th>
<th>Read Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left">4M20.00</td>
<td align="left">Lymphoma stage I</td>
</tr>
<tr>
<td align="left">4M21.00</td>
<td align="left">Lymphoma stage II</td>
</tr>
<tr>
<td align="left">4M22.00</td>
<td align="left">Lymphoma stage III</td>
</tr>
<tr>
<td align="left">4M23.00</td>
<td align="left">Lymphoma stage IV</td>
</tr>
<tr>
<td align="left">7G03K00</td>
<td align="left">Excision malignant skin tumour</td>
</tr>
<tr>
<td align="left">A789500</td>
<td align="left">HIV disease resulting in Kaposi's sarcoma</td>
</tr>
<tr>
<td align="left">A789511</td>
<td align="left">HIV disease resulting in Kaposi sarcoma</td>
</tr>
<tr>
<td align="left">B120.00</td>
<td align="left">Malignant neoplasm of duodenum</td>
</tr>
<tr>
<td align="left">B121.00</td>
<td align="left">Malignant neoplasm of jejunum</td>
</tr>
<tr>
<td align="left">B122.00</td>
<td align="left">Malignant neoplasm of ileum</td>
</tr>
<tr>
<td align="left">B123.00</td>
<td align="left">Malignant neoplasm of Meckel's diverticulum</td>
</tr>
<tr>
<td align="left">B124.00</td>
<td align="left">Malignant neoplasm, overlapping lesion of small intestine</td>
</tr>
<tr>
<td align="left">B12..00</td>
<td align="left">Malignant neoplasm of small intestine and duodenum</td>
</tr>
<tr>
<td align="left">B12y.00</td>
<td align="left">Malignant neoplasm of other specified site small intestine</td>
</tr>
<tr>
<td align="left">B12z.00</td>
<td align="left">Malignant neoplasm of small intestine NOS</td>
</tr>
<tr>
<td align="left">B15..00</td>
<td align="left">Malignant neoplasm of liver and intrahepatic bile ducts</td>
</tr>
<tr>
<td align="left">B15z.00</td>
<td align="left">Malignant neoplasm of liver and intrahepatic bile ducts NOS</td>
</tr>
<tr>
<td align="left">B160.00</td>
<td align="left">Malignant neoplasm of gallbladder</td>
</tr>
<tr>
<td align="left">B160.11</td>
<td align="left">Carcinoma gallbladder</td>
</tr>
<tr>
<td align="left">B16..00</td>
<td align="left">Malignant neoplasm gallbladder and extrahepatic bile ducts</td>
</tr>
<tr>
<td align="left">B16y.00</td>
<td align="left">Malignant neoplasm other gallbladder/extrahepatic bile duct</td>
</tr>
<tr>
<td align="left">B16z.00</td>
<td align="left">Malignant neoplasm gallbladder/extrahepatic bile ducts NOS</td>
</tr>
<tr>
<td align="left">B180100</td>
<td align="left">Malignant neoplasm of perinephric tissue</td>
</tr>
<tr>
<td align="left">B180200</td>
<td align="left">Malignant neoplasm of retrocaecal tissue</td>
</tr>
<tr>
<td align="left">B180.00</td>
<td align="left">Malignant neoplasm of retroperitoneum</td>
</tr>
<tr>
<td align="left">B180z00</td>
<td align="left">Malignant neoplasm of retroperitoneum NOS</td>
</tr>
<tr>
<td align="left">B182.00</td>
<td align="left">Overlapping malign lesion of retroperitoneum and peritoneum</td>
</tr>
<tr>
<td align="left">B18..00</td>
<td align="left">Malignant neoplasm of retroperitoneum and peritoneum</td>
</tr>
<tr>
<td align="left">B18y100</td>
<td align="left">Malignant neoplasm of mesocaecum</td>
</tr>
<tr>
<td align="left">B18y200</td>
<td align="left">Malignant neoplasm of mesorectum</td>
</tr>
<tr>
<td align="left">B18y300</td>
<td align="left">Malignant neoplasm of omentum</td>
</tr>
<tr>
<td align="left">B18y400</td>
<td align="left">Malignant neoplasm of parietal peritoneum</td>
</tr>
<tr>
<td align="left">B18y500</td>
<td align="left">Malignant neoplasm of pelvic peritoneum</td>
</tr>
<tr>
<td align="left">B18y600</td>
<td align="left">Malignant neoplasm of the pouch of Douglas</td>
</tr>
<tr>
<td align="left">B18y700</td>
<td align="left">Malignant neoplasm of mesentery</td>
</tr>
<tr>
<td align="left">B18y.00</td>
<td align="left">Malignant neoplasm of specified parts of peritoneum</td>
</tr>
<tr>
<td align="left">B18yz00</td>
<td align="left">Malignant neoplasm of specified parts of peritoneum NOS</td>
</tr>
<tr>
<td align="left">B18z.00</td>
<td align="left">Malignant neoplasm of retroperitoneum and peritoneum NOS</td>
</tr>
<tr>
<td align="left">B1z0.00</td>
<td align="left">Malignant neoplasm of intestinal tract, part unspecified</td>
</tr>
<tr>
<td align="left">B1z1000</td>
<td align="left">Angiosarcoma of spleen</td>
</tr>
<tr>
<td align="left">B1z1100</td>
<td align="left">Fibrosarcoma of spleen</td>
</tr>
<tr>
<td align="left">B1z1.00</td>
<td align="left">Malignant neoplasm of spleen NEC</td>
</tr>
<tr>
<td align="left">B1z1z00</td>
<td align="left">Malignant neoplasm of spleen NOS</td>
</tr>
<tr>
<td align="left">B1z2.00</td>
<td align="left">Malignant neoplasm, overlapping lesion of digestive system</td>
</tr>
<tr>
<td align="left">B1z..00</td>
<td align="left">Malig neop oth/ill-defined sites digestive tract/peritoneum</td>
</tr>
<tr>
<td align="left">B1zy.00</td>
<td align="left">Malignant neoplasm other spec digestive tract and peritoneum</td>
</tr>
<tr>
<td align="left">B1zz.00</td>
<td align="left">Malignant neoplasm of digestive tract and peritoneum NOS</td>
</tr>
<tr>
<td align="left">B200000</td>
<td align="left">Malignant neoplasm of cartilage of nose</td>
</tr>
<tr>
<td align="left">B200100</td>
<td align="left">Malignant neoplasm of nasal conchae</td>
</tr>
<tr>
<td align="left">B200200</td>
<td align="left">Malignant neoplasm of septum of nose</td>
</tr>
<tr>
<td align="left">B200300</td>
<td align="left">Malignant neoplasm of vestibule of nose</td>
</tr>
<tr>
<td align="left">B200.00</td>
<td align="left">Malignant neoplasm of nasal cavities</td>
</tr>
<tr>
<td align="left">B200z00</td>
<td align="left">Malignant neoplasm of nasal cavities NOS</td>
</tr>
<tr>
<td align="left">B201000</td>
<td align="left">Malignant neoplasm of auditory (Eustachian) tube</td>
</tr>
<tr>
<td align="left">B201100</td>
<td align="left">Malignant neoplasm of tympanic cavity</td>
</tr>
<tr>
<td align="left">B201200</td>
<td align="left">Malignant neoplasm of tympanic antrum</td>
</tr>
<tr>
<td align="left">B201300</td>
<td align="left">Malignant neoplasm of mastoid air cells</td>
</tr>
<tr>
<td align="left">B201.00</td>
<td align="left">Malig neop auditory tube, middle ear and mastoid air cells</td>
</tr>
<tr>
<td align="left">B201z00</td>
<td align="left">Malig neop auditory tube, middle ear, mastoid air cells NOS</td>
</tr>
<tr>
<td align="left">B202.00</td>
<td align="left">Malignant neoplasm of maxillary sinus</td>
</tr>
<tr>
<td align="left">B203.00</td>
<td align="left">Malignant neoplasm of ethmoid sinus</td>
</tr>
<tr>
<td align="left">B204.00</td>
<td align="left">Malignant neoplasm of frontal sinus</td>
</tr>
<tr>
<td align="left">B205.00</td>
<td align="left">Malignant neoplasm of sphenoidal sinus</td>
</tr>
<tr>
<td align="left">B206.00</td>
<td align="left">Malignant neoplasm, overlapping lesion of accessory sinuses</td>
</tr>
<tr>
<td align="left">B20..00</td>
<td align="left">Malig neop nasal cavities, middle ear and accessory sinuses</td>
</tr>
<tr>
<td align="left">B20y.00</td>
<td align="left">Malig neop other site nasal cavity, middle ear and sinuses</td>
</tr>
<tr>
<td align="left">B20z.00</td>
<td align="left">Malignant neoplasm of accessory sinus NOS</td>
</tr>
<tr>
<td align="left">B210.00</td>
<td align="left">Malignant neoplasm of glottis</td>
</tr>
<tr>
<td align="left">B211.00</td>
<td align="left">Malignant neoplasm of supraglottis</td>
</tr>
<tr>
<td align="left">B212.00</td>
<td align="left">Malignant neoplasm of subglottis</td>
</tr>
<tr>
<td align="left">B213000</td>
<td align="left">Malignant neoplasm of arytenoid cartilage</td>
</tr>
<tr>
<td align="left">B213100</td>
<td align="left">Malignant neoplasm of cricoid cartilage</td>
</tr>
<tr>
<td align="left">B213200</td>
<td align="left">Malignant neoplasm of cuneiform cartilage</td>
</tr>
<tr>
<td align="left">B213300</td>
<td align="left">Malignant neoplasm of thyroid cartilage</td>
</tr>
<tr>
<td align="left">B213.00</td>
<td align="left">Malignant neoplasm of laryngeal cartilage</td>
</tr>
<tr>
<td align="left">B213z00</td>
<td align="left">Malignant neoplasm of laryngeal cartilage NOS</td>
</tr>
<tr>
<td align="left">B214.00</td>
<td align="left">Malignant neoplasm, overlapping lesion of larynx</td>
</tr>
<tr>
<td align="left">B215.00</td>
<td align="left">Malignant neoplasm of epiglottis NOS</td>
</tr>
<tr>
<td align="left">B21..00</td>
<td align="left">Malignant neoplasm of larynx</td>
</tr>
<tr>
<td align="left">B21y.00</td>
<td align="left">Malignant neoplasm of larynx, other specified site</td>
</tr>
<tr>
<td align="left">B21z.00</td>
<td align="left">Malignant neoplasm of larynx NOS</td>
</tr>
<tr>
<td align="left">B230.00</td>
<td align="left">Malignant neoplasm of parietal pleura</td>
</tr>
<tr>
<td align="left">B231.00</td>
<td align="left">Malignant neoplasm of visceral pleura</td>
</tr>
<tr>
<td align="left">B23..00</td>
<td align="left">Malignant neoplasm of pleura</td>
</tr>
<tr>
<td align="left">B23y.00</td>
<td align="left">Malignant neoplasm of other specified pleura</td>
</tr>
<tr>
<td align="left">B23z.00</td>
<td align="left">Malignant neoplasm of pleura NOS</td>
</tr>
<tr>
<td align="left">B240.00</td>
<td align="left">Malignant neoplasm of thymus</td>
</tr>
<tr>
<td align="left">B241000</td>
<td align="left">Malignant neoplasm of endocardium</td>
</tr>
<tr>
<td align="left">B241200</td>
<td align="left">Malignant neoplasm of myocardium</td>
</tr>
<tr>
<td align="left">B241300</td>
<td align="left">Malignant neoplasm of pericardium</td>
</tr>
<tr>
<td align="left">B241.00</td>
<td align="left">Malignant neoplasm of heart</td>
</tr>
<tr>
<td align="left">B241z00</td>
<td align="left">Malignant neoplasm of heart NOS</td>
</tr>
<tr>
<td align="left">B242.00</td>
<td align="left">Malignant neoplasm of anterior mediastinum</td>
</tr>
<tr>
<td align="left">B243.00</td>
<td align="left">Malignant neoplasm of posterior mediastinum</td>
</tr>
<tr>
<td align="left">B24..00</td>
<td align="left">Malignant neoplasm of thymus, heart and mediastinum</td>
</tr>
<tr>
<td align="left">B24X.00</td>
<td align="left">Malignant neoplasm of mediastinum, part unspecified</td>
</tr>
<tr>
<td align="left">B24y.00</td>
<td align="left">Malig neop of other site of heart, thymus and mediastinum</td>
</tr>
<tr>
<td align="left">B24z.00</td>
<td align="left">Malignant neoplasm of heart, thymus and mediastinum NOS</td>
</tr>
<tr>
<td align="left">B25..00</td>
<td align="left">Malig neo, overlapping lesion of heart, mediastinum & pleura</td>
</tr>
<tr>
<td align="left">B26..00</td>
<td align="left">Malignant neoplasm, overlap lesion of resp & intrathor orgs</td>
</tr>
<tr>
<td align="left">B2z0.00</td>
<td align="left">Malig neop of upper respiratory tract, part unspecified</td>
</tr>
<tr>
<td align="left">B2z..00</td>
<td align="left">Malig neop other/ill-defined sites resp/intrathoracic organs</td>
</tr>
<tr>
<td align="left">B2zy.00</td>
<td align="left">Malignant neoplasm of other site of respiratory tract</td>
</tr>
<tr>
<td align="left">B2zz.00</td>
<td align="left">Malignant neoplasm of respiratory tract NOS</td>
</tr>
<tr>
<td align="left">B310000</td>
<td align="left">Malignant neoplasm of soft tissue of head</td>
</tr>
<tr>
<td align="left">B310100</td>
<td align="left">Malignant neoplasm of soft tissue of face</td>
</tr>
<tr>
<td align="left">B310200</td>
<td align="left">Malignant neoplasm of soft tissue of neck</td>
</tr>
<tr>
<td align="left">B310300</td>
<td align="left">Malignant neoplasm of cartilage of ear</td>
</tr>
<tr>
<td align="left">B310400</td>
<td align="left">Malignant neoplasm of tarsus of eyelid</td>
</tr>
<tr>
<td align="left">B310500</td>
<td align="left">Malignant neoplasm soft tissues of cervical spine</td>
</tr>
<tr>
<td align="left">B310.00</td>
<td align="left">Malig neop of connective and soft tissue head, face and neck</td>
</tr>
<tr>
<td align="left">B310z00</td>
<td align="left">Malig neop connective and soft tissue head, face, neck NOS</td>
</tr>
<tr>
<td align="left">B311000</td>
<td align="left">Malignant neoplasm of connective and soft tissue of shoulder</td>
</tr>
<tr>
<td align="left">B311100</td>
<td align="left">Malignant neoplasm of connective and soft tissue, upper arm</td>
</tr>
<tr>
<td align="left">B311200</td>
<td align="left">Malignant neoplasm of connective and soft tissue of fore-arm</td>
</tr>
<tr>
<td align="left">B311300</td>
<td align="left">Malignant neoplasm of connective and soft tissue of hand</td>
</tr>
<tr>
<td align="left">B311400</td>
<td align="left">Malignant neoplasm of connective and soft tissue of finger</td>
</tr>
<tr>
<td align="left">B311500</td>
<td align="left">Malignant neoplasm of connective and soft tissue of thumb</td>
</tr>
<tr>
<td align="left">B311.00</td>
<td align="left">Malig neop connective and soft tissue upper limb/shoulder</td>
</tr>
<tr>
<td align="left">B311z00</td>
<td align="left">Malig neop connective soft tissue upper limb/shoulder NOS</td>
</tr>
<tr>
<td align="left">B312000</td>
<td align="left">Malignant neoplasm of connective and soft tissue of hip</td>
</tr>
<tr>
<td align="left">B312100</td>
<td align="left">Malig neop of connective and soft tissue thigh and upper leg</td>
</tr>
<tr>
<td align="left">B312200</td>
<td align="left">Malig neop connective and soft tissue of popliteal space</td>
</tr>
<tr>
<td align="left">B312300</td>
<td align="left">Malig neop of connective and soft tissue of lower leg</td>
</tr>
<tr>
<td align="left">B312400</td>
<td align="left">Malignant neoplasm of connective and soft tissue of foot</td>
</tr>
<tr>
<td align="left">B312500</td>
<td align="left">Malignant neoplasm of connective and soft tissue of toe</td>
</tr>
<tr>
<td align="left">B312.00</td>
<td align="left">Malig neop of connective and soft tissue of hip and leg</td>
</tr>
<tr>
<td align="left">B312z00</td>
<td align="left">Malig neop connective and soft tissue hip and leg NOS</td>
</tr>
<tr>
<td align="left">B313000</td>
<td align="left">Malignant neoplasm of connective and soft tissue of axilla</td>
</tr>
<tr>
<td align="left">B313100</td>
<td align="left">Malignant neoplasm of diaphragm</td>
</tr>
<tr>
<td align="left">B313200</td>
<td align="left">Malignant neoplasm of great vessels</td>
</tr>
<tr>
<td align="left">B313300</td>
<td align="left">Malig neoplasm of connective and soft tissues of thor spine</td>
</tr>
<tr>
<td align="left">B313.00</td>
<td align="left">Malignant neoplasm of connective and soft tissue of thorax</td>
</tr>
<tr>
<td align="left">B313z00</td>
<td align="left">Malig neop of connective and soft tissue of thorax NOS</td>
</tr>
<tr>
<td align="left">B314000</td>
<td align="left">Malig neop of connective and soft tissue of abdominal wall</td>
</tr>
<tr>
<td align="left">B314100</td>
<td align="left">Malig neoplasm of connective and soft tissues of lumb spine</td>
</tr>
<tr>
<td align="left">B314.00</td>
<td align="left">Malignant neoplasm of connective and soft tissue of abdomen</td>
</tr>
<tr>
<td align="left">B314z00</td>
<td align="left">Malig neop of connective and soft tissue of abdomen NOS</td>
</tr>
<tr>
<td align="left">B315000</td>
<td align="left">Malignant neoplasm of connective and soft tissue of buttock</td>
</tr>
<tr>
<td align="left">B315100</td>
<td align="left">Malig neop of connective and soft tissue of inguinal region</td>
</tr>
<tr>
<td align="left">B315200</td>
<td align="left">Malignant neoplasm of connective and soft tissue of perineum</td>
</tr>
<tr>
<td align="left">B315300</td>
<td align="left">Malig neopl of connective and soft tissue - sacrum or coccyx</td>
</tr>
<tr>
<td align="left">B315.00</td>
<td align="left">Malignant neoplasm of connective and soft tissue of pelvis</td>
</tr>
<tr>
<td align="left">B315z00</td>
<td align="left">Malig neop of connective and soft tissue of pelvis NOS</td>
</tr>
<tr>
<td align="left">B316.00</td>
<td align="left">Malig neop of connective and soft tissue trunk unspecified</td>
</tr>
<tr>
<td align="left">B31y.00</td>
<td align="left">Malig neop connective and soft tissue other specified site</td>
</tr>
<tr>
<td align="left">B31z000</td>
<td align="left">Kaposi's sarcoma of soft tissue</td>
</tr>
<tr>
<td align="left">B31z.00</td>
<td align="left">Malignant neoplasm of connective and soft tissue, site NOS</td>
</tr>
<tr>
<td align="left">B420.00</td>
<td align="left">Choriocarcinoma</td>
</tr>
<tr>
<td align="left">B42..00</td>
<td align="left">Malignant neoplasm of placenta</td>
</tr>
<tr>
<td align="left">B441.00</td>
<td align="left">Malignant neoplasm of fallopian tube</td>
</tr>
<tr>
<td align="left">B442.00</td>
<td align="left">Malignant neoplasm of broad ligament</td>
</tr>
<tr>
<td align="left">B443.00</td>
<td align="left">Malignant neoplasm of parametrium</td>
</tr>
<tr>
<td align="left">B44..00</td>
<td align="left">Malignant neoplasm of ovary and other uterine adnexa</td>
</tr>
<tr>
<td align="left">B44y.00</td>
<td align="left">Malignant neoplasm of other site of uterine adnexa</td>
</tr>
<tr>
<td align="left">B44z.00</td>
<td align="left">Malignant neoplasm of uterine adnexa NOS</td>
</tr>
<tr>
<td align="left">B450100</td>
<td align="left">Malignant neoplasm of vaginal vault</td>
</tr>
<tr>
<td align="left">B450.00</td>
<td align="left">Malignant neoplasm of vagina</td>
</tr>
<tr>
<td align="left">B450z00</td>
<td align="left">Malignant neoplasm of vagina NOS</td>
</tr>
<tr>
<td align="left">B451000</td>
<td align="left">Malignant neoplasm of greater vestibular (Bartholin's) gland</td>
</tr>
<tr>
<td align="left">B451.00</td>
<td align="left">Malignant neoplasm of labia majora</td>
</tr>
<tr>
<td align="left">B451z00</td>
<td align="left">Malignant neoplasm of labia majora NOS</td>
</tr>
<tr>
<td align="left">B452.00</td>
<td align="left">Malignant neoplasm of labia minora</td>
</tr>
<tr>
<td align="left">B453.00</td>
<td align="left">Malignant neoplasm of clitoris</td>
</tr>
<tr>
<td align="left">B454.00</td>
<td align="left">Malignant neoplasm of vulva unspecified</td>
</tr>
<tr>
<td align="left">B454.11</td>
<td align="left">Primary vulval cancer</td>
</tr>
<tr>
<td align="left">B45..00</td>
<td align="left">Malig neop of other and unspecified female genital organs</td>
</tr>
<tr>
<td align="left">B45X.00</td>
<td align="left">Malignant neoplasm/overlapping lesion/feml genital organs</td>
</tr>
<tr>
<td align="left">B45y000</td>
<td align="left">Malignant neoplasm of overlapping lesion of vulva</td>
</tr>
<tr>
<td align="left">B45y.00</td>
<td align="left">Malignant neoplasm of other specified female genital organ</td>
</tr>
<tr>
<td align="left">B45z.00</td>
<td align="left">Malignant neoplasm of female genital organ NOS</td>
</tr>
<tr>
<td align="left">B480.00</td>
<td align="left">Malignant neoplasm of prepuce (foreskin)</td>
</tr>
<tr>
<td align="left">B481.00</td>
<td align="left">Malignant neoplasm of glans penis</td>
</tr>
<tr>
<td align="left">B482.00</td>
<td align="left">Malignant neoplasm of body of penis</td>
</tr>
<tr>
<td align="left">B483.00</td>
<td align="left">Malignant neoplasm of penis, part unspecified</td>
</tr>
<tr>
<td align="left">B484.00</td>
<td align="left">Malignant neoplasm of epididymis</td>
</tr>
<tr>
<td align="left">B485.00</td>
<td align="left">Malignant neoplasm of spermatic cord</td>
</tr>
<tr>
<td align="left">B486.00</td>
<td align="left">Malignant neoplasm of scrotum</td>
</tr>
<tr>
<td align="left">B487.00</td>
<td align="left">Malignant neoplasm, overlapping lesion of penis</td>
</tr>
<tr>
<td align="left">B48y000</td>
<td align="left">Malignant neoplasm of seminal vesicle</td>
</tr>
<tr>
<td align="left">B48y100</td>
<td align="left">Malignant neoplasm of tunica vaginalis</td>
</tr>
<tr>
<td align="left">B48y200</td>
<td align="left">Malignant neoplasm, overlapping lesion male genital orgs</td>
</tr>
<tr>
<td align="left">B48y.00</td>
<td align="left">Malignant neoplasm of other male genital organ</td>
</tr>
<tr>
<td align="left">B48yz00</td>
<td align="left">Malignant neoplasm of other male genital organ NOS</td>
</tr>
<tr>
<td align="left">B48z.00</td>
<td align="left">Malignant neoplasm of penis and other male genital organ NOS</td>
</tr>
<tr>
<td align="left">B4A3.00</td>
<td align="left">Malignant neoplasm of urethra</td>
</tr>
<tr>
<td align="left">B4A4.00</td>
<td align="left">Malignant neoplasm of paraurethral glands</td>
</tr>
<tr>
<td align="left">B4A..00</td>
<td align="left">Malig neop of kidney and other unspecified urinary organs</td>
</tr>
<tr>
<td align="left">B4Ay000</td>
<td align="left">Malignant neoplasm of overlapping lesion of urinary organs</td>
</tr>
<tr>
<td align="left">B4Ay.00</td>
<td align="left">Malignant neoplasm of other urinary organs</td>
</tr>
<tr>
<td align="left">B4Az.00</td>
<td align="left">Malignant neoplasm of kidney or urinary organs NOS</td>
</tr>
<tr>
<td align="left">B500000</td>
<td align="left">Malignant neoplasm of ciliary body</td>
</tr>
<tr>
<td align="left">B500100</td>
<td align="left">Malignant neoplasm of iris</td>
</tr>
<tr>
<td align="left">B500200</td>
<td align="left">Malignant neoplasm of crystalline lens</td>
</tr>
<tr>
<td align="left">B500.00</td>
<td align="left">Malig neop eyeball excl conjunctiva, cornea, retina, choroid</td>
</tr>
<tr>
<td align="left">B500z00</td>
<td align="left">Malignant neoplasm of eyeball NOS</td>
</tr>
<tr>
<td align="left">B501000</td>
<td align="left">Malignant neoplasm of connective tissue of orbit</td>
</tr>
<tr>
<td align="left">B501.00</td>
<td align="left">Malignant neoplasm of orbit</td>
</tr>
<tr>
<td align="left">B501z00</td>
<td align="left">Malignant neoplasm of orbit NOS</td>
</tr>
<tr>
<td align="left">B502.00</td>
<td align="left">Malignant neoplasm of lacrimal gland</td>
</tr>
<tr>
<td align="left">B503.00</td>
<td align="left">Malignant neoplasm of conjunctiva</td>
</tr>
<tr>
<td align="left">B504.00</td>
<td align="left">Malignant neoplasm of cornea</td>
</tr>
<tr>
<td align="left">B505.00</td>
<td align="left">Malignant neoplasm of retina</td>
</tr>
<tr>
<td align="left">B506.00</td>
<td align="left">Malignant neoplasm of choroid</td>
</tr>
<tr>
<td align="left">B507000</td>
<td align="left">Malignant neoplasm of lacrimal sac</td>
</tr>
<tr>
<td align="left">B507100</td>
<td align="left">Malignant neoplasm of nasolacrimal duct</td>
</tr>
<tr>
<td align="left">B507.00</td>
<td align="left">Malignant neoplasm of lacrimal duct</td>
</tr>
<tr>
<td align="left">B508.00</td>
<td align="left">Malignant neoplasm, overlapping lesion of eye and adnexa</td>
</tr>
<tr>
<td align="left">B50..00</td>
<td align="left">Malignant neoplasm of eye</td>
</tr>
<tr>
<td align="left">B50y.00</td>
<td align="left">Malignant neoplasm of other specified site of eye</td>
</tr>
<tr>
<td align="left">B50z.00</td>
<td align="left">Malignant neoplasm of eye NOS</td>
</tr>
<tr>
<td align="left">B524000</td>
<td align="left">Malignant neoplasm of peripheral nerves of head, face & neck</td>
</tr>
<tr>
<td align="left">B524100</td>
<td align="left">Malignant neoplasm of peripheral nerve,upp limb,incl should</td>
</tr>
<tr>
<td align="left">B524200</td>
<td align="left">Malignant neoplasm of peripheral nerve of low limb, incl hip</td>
</tr>
<tr>
<td align="left">B524300</td>
<td align="left">Malignant neoplasm of peripheral nerve of thorax</td>
</tr>
<tr>
<td align="left">B524400</td>
<td align="left">Malignant neoplasm of peripheral nerve of abdomen</td>
</tr>
<tr>
<td align="left">B524500</td>
<td align="left">Malignant neoplasm of peripheral nerve of pelvis</td>
</tr>
<tr>
<td align="left">B524600</td>
<td align="left">Malignant neoplasm,overlap lesion periph nerve & auton ns</td>
</tr>
<tr>
<td align="left">B524.00</td>
<td align="left">Malig neopl peripheral nerves and autonomic nervous system</td>
</tr>
<tr>
<td align="left">B524W00</td>
<td align="left">Mal neoplasm/periph nerves+autonomic nervous system,unspc</td>
</tr>
<tr>
<td align="left">B52y.00</td>
<td align="left">Malignant neoplasm of other specified part of nervous system</td>
</tr>
<tr>
<td align="left">B52z.00</td>
<td align="left">Malignant neoplasm of nervous system NOS</td>
</tr>
<tr>
<td align="left">B52..00</td>
<td align="left">Malig neop of other and unspecified parts of nervous system</td>
</tr>
<tr>
<td align="left">B540000</td>
<td align="left">Malignant neoplasm of adrenal cortex</td>
</tr>
<tr>
<td align="left">B540100</td>
<td align="left">Malignant neoplasm of adrenal medulla</td>
</tr>
<tr>
<td align="left">B540.00</td>
<td align="left">Malignant neoplasm of adrenal gland</td>
</tr>
<tr>
<td align="left">B540.11</td>
<td align="left">Phaeochromocytoma</td>
</tr>
<tr>
<td align="left">B540z00</td>
<td align="left">Malignant neoplasm of adrenal gland NOS</td>
</tr>
<tr>
<td align="left">B541.00</td>
<td align="left">Malignant neoplasm of parathyroid gland</td>
</tr>
<tr>
<td align="left">B54X.00</td>
<td align="left">Malignant neoplasm-pluriglandular involvement,unspecified</td>
</tr>
<tr>
<td align="left">B54y.00</td>
<td align="left">Malignant neoplasm of other specified endocrine gland</td>
</tr>
<tr>
<td align="left">B54z.00</td>
<td align="left">Malig neop of endocrine gland or related structure NOS</td>
</tr>
<tr>
<td align="left">B550000</td>
<td align="left">Malignant neoplasm of head NOS</td>
</tr>
<tr>
<td align="left">B550100</td>
<td align="left">Malignant neoplasm of cheek NOS</td>
</tr>
<tr>
<td align="left">B550200</td>
<td align="left">Malignant neoplasm of nose NOS</td>
</tr>
<tr>
<td align="left">B550300</td>
<td align="left">Malignant neoplasm of jaw NOS</td>
</tr>
<tr>
<td align="left">B550400</td>
<td align="left">Malignant neoplasm of neck NOS</td>
</tr>
<tr>
<td align="left">B550500</td>
<td align="left">Malignant neoplasm of supraclavicular fossa NOS</td>
</tr>
<tr>
<td align="left">B550.00</td>
<td align="left">Malignant neoplasm of head, neck and face</td>
</tr>
<tr>
<td align="left">B550z00</td>
<td align="left">Malignant neoplasm of head, neck and face NOS</td>
</tr>
<tr>
<td align="left">B551000</td>
<td align="left">Malignant neoplasm of axilla NOS</td>
</tr>
<tr>
<td align="left">B551100</td>
<td align="left">Malignant neoplasm of chest wall NOS</td>
</tr>
<tr>
<td align="left">B551200</td>
<td align="left">Malignant neoplasm of intrathoracic site NOS</td>
</tr>
<tr>
<td align="left">B551.00</td>
<td align="left">Malignant neoplasm of thorax</td>
</tr>
<tr>
<td align="left">B551z00</td>
<td align="left">Malignant neoplasm of thorax NOS</td>
</tr>
<tr>
<td align="left">B552.00</td>
<td align="left">Malignant neoplasm of abdomen</td>
</tr>
<tr>
<td align="left">B553000</td>
<td align="left">Malignant neoplasm of inguinal region NOS</td>
</tr>
<tr>
<td align="left">B553100</td>
<td align="left">Malignant neoplasm of presacral region</td>
</tr>
<tr>
<td align="left">B553200</td>
<td align="left">Malignant neoplasm of sacrococcygeal region</td>
</tr>
<tr>
<td align="left">B553.00</td>
<td align="left">Malignant neoplasm of pelvis</td>
</tr>
<tr>
<td align="left">B553z00</td>
<td align="left">Malignant neoplasm of pelvis NOS</td>
</tr>
<tr>
<td align="left">B554.00</td>
<td align="left">Malignant neoplasm of upper limb NOS</td>
</tr>
<tr>
<td align="left">B555.00</td>
<td align="left">Malignant neoplasm of lower limb NOS</td>
</tr>
<tr>
<td align="left">B55y000</td>
<td align="left">Malignant neoplasm of back NOS</td>
</tr>
<tr>
<td align="left">B55y100</td>
<td align="left">Malignant neoplasm of trunk NOS</td>
</tr>
<tr>
<td align="left">B55y200</td>
<td align="left">Malignant neoplasm of flank NOS</td>
</tr>
<tr>
<td align="left">B55y.00</td>
<td align="left">Malignant neoplasm of other specified sites</td>
</tr>
<tr>
<td align="left">B55yz00</td>
<td align="left">Malignant neoplasm of specified site NOS</td>
</tr>
<tr>
<td align="left">B55z.00</td>
<td align="left">Malignant neoplasm of other and ill defined site NOS</td>
</tr>
<tr>
<td align="left">B591.00</td>
<td align="left">Other malignant neoplasm NOS</td>
</tr>
<tr>
<td align="left">B592X00</td>
<td align="left">Kaposi's sarcoma of multiple organs</td>
</tr>
<tr>
<td align="left">B593.00</td>
<td align="left">Primary malignant neoplasm of unknown site</td>
</tr>
<tr>
<td align="left">B595.00</td>
<td align="left">Malignant tumour of unknown origin</td>
</tr>
<tr>
<td align="left">B59..00</td>
<td align="left">Malignant neoplasm of unspecified site</td>
</tr>
<tr>
<td align="left">B59z.00</td>
<td align="left">Malignant neoplasm of unspecified site NOS</td>
</tr>
<tr>
<td align="left">B59zX00</td>
<td align="left">Kaposi's sarcoma, unspecified</td>
</tr>
<tr>
<td align="left">B5...00</td>
<td align="left">Malignant neoplasm of other and unspecified sites</td>
</tr>
<tr>
<td align="left">B5...11</td>
<td align="left">Carcinoma of other and unspecified sites</td>
</tr>
<tr>
<td align="left">B5y..00</td>
<td align="left">Malignant neoplasm of other and unspecified site OS</td>
</tr>
<tr>
<td align="left">B5z..00</td>
<td align="left">Malignant neoplasm of other and unspecified site NOS</td>
</tr>
<tr>
<td align="left">B623000</td>
<td align="left">Malignant histiocytosis of unspecified site</td>
</tr>
<tr>
<td align="left">B623100</td>
<td align="left">Malignant histiocytosis of lymph nodes head, face and neck</td>
</tr>
<tr>
<td align="left">B623300</td>
<td align="left">Malignant histiocytosis of intra-abdominal lymph nodes</td>
</tr>
<tr>
<td align="left">B623.00</td>
<td align="left">Malignant histiocytosis</td>
</tr>
<tr>
<td align="left">B623z00</td>
<td align="left">Malignant histiocytosis NOS</td>
</tr>
<tr>
<td align="left">B625000</td>
<td align="left">Letterer-Siwe disease of unspecified sites</td>
</tr>
<tr>
<td align="left">B625200</td>
<td align="left">Letterer-Siwe disease of intrathoracic lymph nodes</td>
</tr>
<tr>
<td align="left">B625800</td>
<td align="left">Letterer-Siwe disease of lymph nodes of multiple sites</td>
</tr>
<tr>
<td align="left">B625.00</td>
<td align="left">Letterer-Siwe disease</td>
</tr>
<tr>
<td align="left">B625.11</td>
<td align="left">Histiocytosis X (acute, progressive)</td>
</tr>
<tr>
<td align="left">B625z00</td>
<td align="left">Letterer-Siwe disease NOS</td>
</tr>
<tr>
<td align="left">B626000</td>
<td align="left">Mast cell malignancy of unspecified site</td>
</tr>
<tr>
<td align="left">B626500</td>
<td align="left">Mast cell malignancy of lymph nodes inguinal region and leg</td>
</tr>
<tr>
<td align="left">B626800</td>
<td align="left">Mast cell malignancy of lymph nodes of multiple sites</td>
</tr>
<tr>
<td align="left">B626.00</td>
<td align="left">Malignant mast cell tumours</td>
</tr>
<tr>
<td align="left">B626z00</td>
<td align="left">Malignant mast cell tumour NOS</td>
</tr>
<tr>
<td align="left">B62x500</td>
<td align="left">Malignant immunoproliferative small intestinal disease</td>
</tr>
<tr>
<td align="left">B62x600</td>
<td align="left">True histiocytic lymphoma</td>
</tr>
<tr>
<td align="left">B62z000</td>
<td align="left">Unspec malig neop lymphoid/histiocytic of unspecified site</td>
</tr>
<tr>
<td align="left">B62z100</td>
<td align="left">Unspec malig neop lymphoid/histiocytic lymph node head/neck</td>
</tr>
<tr>
<td align="left">B62z200</td>
<td align="left">Unspec malig neop lymphoid/histiocytic of intrathoracic node</td>
</tr>
<tr>
<td align="left">B62z300</td>
<td align="left">Unspec malig neop lymphoid/histiocytic intra-abdominal nodes</td>
</tr>
<tr>
<td align="left">B62z400</td>
<td align="left">Unspec malig neop lymphoid/histiocytic lymph node axilla/arm</td>
</tr>
<tr>
<td align="left">B62z500</td>
<td align="left">Unspec malig neop lymphoid/histiocytic nodes inguinal/leg</td>
</tr>
<tr>
<td align="left">B62z600</td>
<td align="left">Unspec malig neop lymphoid/histiocytic of intrapelvic nodes</td>
</tr>
<tr>
<td align="left">B62z800</td>
<td align="left">Unspec malig neop lymphoid/histiocytic of multiple sites</td>
</tr>
<tr>
<td align="left">B62z.00</td>
<td align="left">Malignant neoplasms of lymphoid and histiocytic tissue NOS</td>
</tr>
<tr>
<td align="left">B62zz00</td>
<td align="left">Lymphoid and histiocytic malignancy NOS</td>
</tr>
<tr>
<td align="left">B62zz11</td>
<td align="left">Immunoproliferative neoplasm</td>
</tr>
<tr>
<td align="left">B63y.00</td>
<td align="left">Other immunoproliferative neoplasms</td>
</tr>
<tr>
<td align="left">B63z.00</td>
<td align="left">Immunoproliferative neoplasm or myeloma NOS</td>
</tr>
<tr>
<td align="left">B6y..00</td>
<td align="left">Malignant neoplasm lymphatic or haematopoietic tissue OS</td>
</tr>
<tr>
<td align="left">B6z0.00</td>
<td align="left">Kaposi's sarcoma of lymph nodes</td>
</tr>
<tr>
<td align="left">B6z..00</td>
<td align="left">Malignant neoplasm lymphatic or haematopoietic tissue NOS</td>
</tr>
<tr>
<td align="left">BB5h100</td>
<td align="left">[M]Adrenal cortical carcinoma</td>
</tr>
<tr>
<td align="left">BB57.00</td>
<td align="left">[M]Adenocarcinoma, intestinal type</td>
</tr>
<tr>
<td align="left">BBcC.00</td>
<td align="left">[M]Aesthesioneuroblastoma</td>
</tr>
<tr>
<td align="left">BBcC.11</td>
<td align="left">[M]Olfactory neuroblastoma</td>
</tr>
<tr>
<td align="left">BBcD.11</td>
<td align="left">[M]Olfactory neuroepithelioma</td>
</tr>
<tr>
<td align="left">BBm4.00</td>
<td align="left">[M]True histiocytic lymphoma</td>
</tr>
<tr>
<td align="left">BBT1.00</td>
<td align="left">[M]Haemangiosarcoma</td>
</tr>
<tr>
<td align="left">BBT7100</td>
<td align="left">[M]Haemangioendothelioma, malignant</td>
</tr>
<tr>
<td align="left">Byu1200</td>
<td align="left">[X]Malignant neoplasm of intestinal tract, part unspecified</td>
</tr>
<tr>
<td align="left">Byu1300</td>
<td align="left">[X]Malignant neoplsm/ill-defin sites within digestive system</td>
</tr>
<tr>
<td align="left">Byu2400</td>
<td align="left">[X]Malignant neoplasm/ill-defined sites within resp system</td>
</tr>
<tr>
<td align="left">Byu2500</td>
<td align="left">[X]Malignant neoplasm of mediastinum, part unspecified</td>
</tr>
<tr>
<td align="left">Byu4.00</td>
<td align="left">[X]Melanoma and other malignant neoplasms of skin</td>
</tr>
<tr>
<td align="left">Byu5300</td>
<td align="left">[X]Kaposi's sarcoma, unspecified</td>
</tr>
<tr>
<td align="left">Byu5400</td>
<td align="left">[X]Malignant neoplasm/peripheral nerves of trunk,unspecified</td>
</tr>
<tr>
<td align="left">Byu5500</td>
<td align="left">[X]Mal neoplasm/overlap les/periph nerv+autonomic nerv systm</td>
</tr>
<tr>
<td align="left">Byu5700</td>
<td align="left">[X]Malignant neoplasm of peritoneum, unspecified</td>
</tr>
<tr>
<td align="left">Byu5800</td>
<td align="left">[X]Mal neoplasm/connective+soft tissue of trunk,unspecified</td>
</tr>
<tr>
<td align="left">Byu5900</td>
<td align="left">[X]Malignant neoplasm/connective + soft tissue,unspecified</td>
</tr>
<tr>
<td align="left">Byu5B00</td>
<td align="left">[X]Kaposi's sarcoma of other sites</td>
</tr>
<tr>
<td align="left">Byu7000</td>
<td align="left">[X]Malignant neoplasm of uterine adnexa, unspecified</td>
</tr>
<tr>
<td align="left">Byu7100</td>
<td align="left">[X]Malignant neoplasm/other specified female genital organs</td>
</tr>
<tr>
<td align="left">Byu7300</td>
<td align="left">[X]Malignant neoplasm of female genital organ, unspecified</td>
</tr>
<tr>
<td align="left">Byu8000</td>
<td align="left">[X]Malignant neoplasm/other specified male genital organs</td>
</tr>
<tr>
<td align="left">Byu8200</td>
<td align="left">[X]Malignant neoplasm of male genital organ, unspecified</td>
</tr>
<tr>
<td align="left">Byu9000</td>
<td align="left">[X]Malignant neoplasm of urinary organ, unspecified</td>
</tr>
<tr>
<td align="left">ByuB100</td>
<td align="left">[X]Malignant neoplasm of endocrine gland, unspecified</td>
</tr>
<tr>
<td align="left">ByuB.00</td>
<td align="left">[X]Malignant neoplasm of thyroid and other endocrine glands</td>
</tr>
<tr>
<td align="left">ByuC000</td>
<td align="left">[X]Malignant neoplasm of other specified sites</td>
</tr>
<tr>
<td align="left">ByuC100</td>
<td align="left">[X]Malignant neoplasm/overlap lesion/other+ill-defined sites</td>
</tr>
<tr>
<td align="left">ByuC600</td>
<td align="left">[X]2ndry malignant neoplasm/oth+unspec parts/nervous system</td>
</tr>
<tr>
<td align="left">ByuC800</td>
<td align="left">[X]Malignant neoplasm without specification of site</td>
</tr>
<tr>
<td align="left">ByuC.00</td>
<td align="left">[X]Malignant neoplasm of ill-defined, secondary and unspeci</td>
</tr>
<tr>
<td align="left">ByuD400</td>
<td align="left">[X]Other malignant immunoproliferative diseases</td>
</tr>
<tr>
<td align="left">ByuDA00</td>
<td align="left">[X]Oth spcf mal neoplsm/lymphoid,haematopoietic+rltd tissue</td>
</tr>
<tr>
<td align="left">ByuDB00</td>
<td align="left">[X]Mal neoplasm/lymphoid,haematopoietic+related tissu,unspcf</td>
</tr>
<tr>
<td align="left">C37y000</td>
<td align="left">Hand - Schuller - Christian disease</td>
</tr>
<tr>
<td align="left">C37y100</td>
<td align="left">Eosinophilic granuloma</td>
</tr>
<tr>
<td align="left">C37y500</td>
<td align="left">Histiocytosis X , chronic</td>
</tr>
<tr>
<td align="left">C37y600</td>
<td align="left">Histiocytosis X , unspecified</td>
</tr>
<tr>
<td align="left">ZV10000</td>
<td align="left">[V]Personal history of malig neop of gastrointestinal tract</td>
</tr>
<tr>
<td align="left">ZV10012</td>
<td align="left">[V]Personal history of malig neop of gastrointestinal tract</td>
</tr>
</tbody>
</table>
<h4>Secondary care diagnoses (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//secondary_care/ICD_pri_other.csv'>ICD_pri_other.csv</a>)</h4>
<table>
<thead>
<tr>
<th>ICD-10 code</th>
<th>ICD-10 Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left">C17</td>
<td align="left">Malignant neoplasm of small intestine</td>
</tr>
<tr>
<td align="left">C23</td>
<td align="left">Malignant neoplasm of gallbladder</td>
</tr>
<tr>
<td align="left">C26.0</td>
<td align="left">Malignant neoplasm: Intestinal tract, part unspecified</td>
</tr>
<tr>
<td align="left">C26.1</td>
<td align="left">Malignant neoplasm: Spleen</td>
</tr>
<tr>
<td align="left">C26.8</td>
<td align="left">Malignant neoplasm: Overlapping lesion of digestive system</td>
</tr>
<tr>
<td align="left">C26.9</td>
<td align="left">Malignant neoplasm: Ill-defined sites within the digestive system</td>
</tr>
<tr>
<td align="left">C30.0</td>
<td align="left">Malignant neoplasm: Nasal cavity</td>
</tr>
<tr>
<td align="left">C30.1</td>
<td align="left">Malignant neoplasm: Middle ear</td>
</tr>
<tr>
<td align="left">C31</td>
<td align="left">Malignant neoplasm of accessory sinuses</td>
</tr>
<tr>
<td align="left">C32</td>
<td align="left">Malignant neoplasm of larynx</td>
</tr>
<tr>
<td align="left">C37</td>
<td align="left">Malignant neoplasm of thymus</td>
</tr>
<tr>
<td align="left">C38.0</td>
<td align="left">Malignant neoplasm: Heart</td>
</tr>
<tr>
<td align="left">C38.1</td>
<td align="left">Malignant neoplasm: Anterior mediastinum</td>
</tr>
<tr>
<td align="left">C38.2</td>
<td align="left">Malignant neoplasm: Posterior mediastinum</td>
</tr>
<tr>
<td align="left">C38.3</td>
<td align="left">Malignant neoplasm: Mediastinum, part unspecified</td>
</tr>
<tr>
<td align="left">C38.4</td>
<td align="left">Malignant neoplasm: Pleura</td>
</tr>
<tr>
<td align="left">C38.8</td>
<td align="left">Overlapping lesion of heart, mediastinum and pleura</td>
</tr>
<tr>
<td align="left">C39.0</td>
<td align="left">Malignant neoplasm: Upper respiratory tract, part unspecified</td>
</tr>
<tr>
<td align="left">C39.8</td>
<td align="left">Malignant neoplasm: Overlapping lesion of respiratory and intrathoracic organs</td>
</tr>
<tr>
<td align="left">C39.9</td>
<td align="left">Malignant neoplasm: Ill-defined sites within the respiratory system</td>
</tr>
<tr>
<td align="left">C46</td>
<td align="left">Kaposi sarcoma</td>
</tr>
<tr>
<td align="left">C47</td>
<td align="left">Malignant neoplasm of peripheral nerves and autonomic nervous system</td>
</tr>
<tr>
<td align="left">C48</td>
<td align="left">Malignant neoplasm of retroperitoneum and peritoneum</td>
</tr>
<tr>
<td align="left">C49</td>
<td align="left">Malignant neoplasm of other connective and soft tissue</td>
</tr>
<tr>
<td align="left">C51</td>
<td align="left">Malignant neoplasm of vulva</td>
</tr>
<tr>
<td align="left">C52</td>
<td align="left">Malignant neoplasm of vagina</td>
</tr>
<tr>
<td align="left">C57</td>
<td align="left">Malignant neoplasm of other and unspecified female genital organs</td>
</tr>
<tr>
<td align="left">C58</td>
<td align="left">Malignant neoplasm of placenta</td>
</tr>
<tr>
<td align="left">C60</td>
<td align="left">Malignant neoplasm of penis</td>
</tr>
<tr>
<td align="left">C63</td>
<td align="left">Malignant neoplasm of other and unspecified male genital organs</td>
</tr>
<tr>
<td align="left">C68</td>
<td align="left">Malignant neoplasm of other and unspecified urinary organs</td>
</tr>
<tr>
<td align="left">C69</td>
<td align="left">Malignant neoplasm of eye and adnexa</td>
</tr>
<tr>
<td align="left">C74</td>
<td align="left">Malignant neoplasm of adrenal gland</td>
</tr>
<tr>
<td align="left">C75.0</td>
<td align="left">Malignant neoplasm: Parathyroid gland</td>
</tr>
<tr>
<td align="left">C75.8</td>
<td align="left">Malignant neoplasm: Pluriglandular involvement, unspecified</td>
</tr>
<tr>
<td align="left">C75.9</td>
<td align="left">Malignant neoplasm: Endocrine gland, unspecified</td>
</tr>
<tr>
<td align="left">C76</td>
<td align="left">Malignant neoplasm of other and ill-defined sites</td>
</tr>
<tr>
<td align="left">C80</td>
<td align="left">Malignant neoplasm without specification of site</td>
</tr>
<tr>
<td align="left">C88.3</td>
<td align="left">Immunoproliferative small intestinal disease</td>
</tr>
<tr>
<td align="left">C88.4</td>
<td align="left">Extranodal marginal zone B-cell lymphoma of mucosa-associated lymphoid tissue [MALT-lymphoma]</td>
</tr>
<tr>
<td align="left">C88.7</td>
<td align="left">Other malignant immunoproliferative diseases</td>
</tr>
<tr>
<td align="left">C88.9</td>
<td align="left">Malignant immunoproliferative disease, unspecified</td>
</tr>
<tr>
<td align="left">C96</td>
<td align="left">Other and unspecified malignant neoplasms of lymphoid, haematopoietic and related tissue</td>
</tr>
</tbody>
</table>
<h2>Primary Malignancy_Other Skin and subcutaneous tissue</h2>
<h4>Implementation</h4>
~~~
At the specified date, a patient is defined as having had Primary Malignancy Skin IF they meet the criteria for any of the following on or before the specified date. The earliest date on which the individual meets any of the following criteria on or before the specified date is defined as the first event date:
Primary care
1. Primary Malignancy Skin diagnosis or history of diagnosis during a consultation
OR
Secondary care
1. ALL diagnoses of Primary Malignancy Skin or history of diagnosis during a hospitalization
~~~
<h4>Primary care (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//primary_care/CPRD_pri_skin.csv'>CPRD_pri_skin.csv</a>)</h4>
<table>
<thead>
<tr>
<th>Read code</th>
<th>Read Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left">7G05600</td>
<td align="left">Excision biopsy of rodent ulcer</td>
</tr>
<tr>
<td align="left">7G05D00</td>
<td align="left">Excision biopsy of basal cell carcinoma</td>
</tr>
<tr>
<td align="left">B330.00</td>
<td align="left">Malignant neoplasm of skin of lip</td>
</tr>
<tr>
<td align="left">B331000</td>
<td align="left">Malignant neoplasm of canthus</td>
</tr>
<tr>
<td align="left">B331100</td>
<td align="left">Malignant neoplasm of upper eyelid</td>
</tr>
<tr>
<td align="left">B331200</td>
<td align="left">Malignant neoplasm of lower eyelid</td>
</tr>
<tr>
<td align="left">B331.00</td>
<td align="left">Malignant neoplasm of eyelid including canthus</td>
</tr>
<tr>
<td align="left">B332000</td>
<td align="left">Malignant neoplasm of skin of auricle (ear)</td>
</tr>
<tr>
<td align="left">B332100</td>
<td align="left">Malignant neoplasm of skin of external auditory meatus</td>
</tr>
<tr>
<td align="left">B332200</td>
<td align="left">Malignant neoplasm of pinna NEC</td>
</tr>
<tr>
<td align="left">B332.00</td>
<td align="left">Malignant neoplasm skin of ear and external auricular canal</td>
</tr>
<tr>
<td align="left">B332z00</td>
<td align="left">Malig neop skin of ear and external auricular canal NOS</td>
</tr>
<tr>
<td align="left">B333000</td>
<td align="left">Malignant neoplasm of skin of cheek, external</td>
</tr>
<tr>
<td align="left">B333100</td>
<td align="left">Malignant neoplasm of skin of chin</td>
</tr>
<tr>
<td align="left">B333200</td>
<td align="left">Malignant neoplasm of skin of eyebrow</td>
</tr>
<tr>
<td align="left">B333300</td>
<td align="left">Malignant neoplasm of skin of forehead</td>
</tr>
<tr>
<td align="left">B333400</td>
<td align="left">Malignant neoplasm of skin of nose (external)</td>
</tr>
<tr>
<td align="left">B333500</td>
<td align="left">Malignant neoplasm of skin of temple</td>
</tr>
<tr>
<td align="left">B333.00</td>
<td align="left">Malignant neoplasm skin of other and unspecified parts face</td>
</tr>
<tr>
<td align="left">B333z00</td>
<td align="left">Malignant neoplasm skin other and unspec part of face NOS</td>
</tr>
<tr>
<td align="left">B334000</td>
<td align="left">Malignant neoplasm of scalp</td>
</tr>
<tr>
<td align="left">B334100</td>
<td align="left">Malignant neoplasm of skin of neck</td>
</tr>
<tr>
<td align="left">B334.00</td>
<td align="left">Malignant neoplasm of scalp and skin of neck</td>
</tr>
<tr>
<td align="left">B334z00</td>
<td align="left">Malignant neoplasm of scalp or skin of neck NOS</td>
</tr>
<tr>
<td align="left">B335000</td>
<td align="left">Malignant neoplasm of skin of axillary fold</td>
</tr>
<tr>
<td align="left">B335100</td>
<td align="left">Malignant neoplasm of skin of chest, excluding breast</td>
</tr>
<tr>
<td align="left">B335200</td>
<td align="left">Malignant neoplasm of skin of breast</td>
</tr>
<tr>
<td align="left">B335300</td>
<td align="left">Malignant neoplasm of skin of abdominal wall</td>
</tr>
<tr>
<td align="left">B335400</td>
<td align="left">Malignant neoplasm of skin of umbilicus</td>
</tr>
<tr>
<td align="left">B335500</td>
<td align="left">Malignant neoplasm of skin of groin</td>
</tr>
<tr>
<td align="left">B335600</td>
<td align="left">Malignant neoplasm of skin of perineum</td>
</tr>
<tr>
<td align="left">B335700</td>
<td align="left">Malignant neoplasm of skin of back</td>
</tr>
<tr>
<td align="left">B335800</td>
<td align="left">Malignant neoplasm of skin of buttock</td>
</tr>
<tr>
<td align="left">B335900</td>
<td align="left">Malignant neoplasm of perianal skin</td>
</tr>
<tr>
<td align="left">B335A00</td>
<td align="left">Malignant neoplasm of skin of scapular region</td>
</tr>
<tr>
<td align="left">B335.00</td>
<td align="left">Malignant neoplasm of skin of trunk, excluding scrotum</td>
</tr>
<tr>
<td align="left">B335z00</td>
<td align="left">Malignant neoplasm of skin of trunk, excluding scrotum, NOS</td>
</tr>
<tr>
<td align="left">B336000</td>
<td align="left">Malignant neoplasm of skin of shoulder</td>
</tr>
<tr>
<td align="left">B336100</td>
<td align="left">Malignant neoplasm of skin of upper arm</td>
</tr>
<tr>
<td align="left">B336200</td>
<td align="left">Malignant neoplasm of skin of fore-arm</td>
</tr>
<tr>
<td align="left">B336300</td>
<td align="left">Malignant neoplasm of skin of hand</td>
</tr>
<tr>
<td align="left">B336400</td>
<td align="left">Malignant neoplasm of skin of finger</td>
</tr>
<tr>
<td align="left">B336500</td>
<td align="left">Malignant neoplasm of skin of thumb</td>
</tr>
<tr>
<td align="left">B336.00</td>
<td align="left">Malignant neoplasm of skin of upper limb and shoulder</td>
</tr>
<tr>
<td align="left">B336z00</td>
<td align="left">Malignant neoplasm of skin of upper limb or shoulder NOS</td>
</tr>
<tr>
<td align="left">B337000</td>
<td align="left">Malignant neoplasm of skin of hip</td>
</tr>
<tr>
<td align="left">B337100</td>
<td align="left">Malignant neoplasm of skin of thigh</td>
</tr>
<tr>
<td align="left">B337200</td>
<td align="left">Malignant neoplasm of skin of knee</td>
</tr>
<tr>
<td align="left">B337300</td>
<td align="left">Malignant neoplasm of skin of popliteal fossa area</td>
</tr>
<tr>
<td align="left">B337400</td>
<td align="left">Malignant neoplasm of skin of lower leg</td>
</tr>
<tr>
<td align="left">B337500</td>
<td align="left">Malignant neoplasm of skin of ankle</td>
</tr>
<tr>
<td align="left">B337600</td>
<td align="left">Malignant neoplasm of skin of heel</td>
</tr>
<tr>
<td align="left">B337700</td>
<td align="left">Malignant neoplasm of skin of foot</td>
</tr>
<tr>
<td align="left">B337800</td>
<td align="left">Malignant neoplasm of skin of toe</td>
</tr>
<tr>
<td align="left">B337900</td>
<td align="left">Malignant neoplasm of skin of great toe</td>
</tr>
<tr>
<td align="left">B337.00</td>
<td align="left">Malignant neoplasm of skin of lower limb and hip</td>
</tr>
<tr>
<td align="left">B337z00</td>
<td align="left">Malignant neoplasm of skin of lower limb or hip NOS</td>
</tr>
<tr>
<td align="left">B338.00</td>
<td align="left">Squamous cell carcinoma of skin</td>
</tr>
<tr>
<td align="left">B339.00</td>
<td align="left">Dermatofibrosarcoma protuberans</td>
</tr>
<tr>
<td align="left">B33..00</td>
<td align="left">Other malignant neoplasm of skin</td>
</tr>
<tr>
<td align="left">B33..11</td>
<td align="left">Basal cell carcinoma</td>
</tr>
<tr>
<td align="left">B33..13</td>
<td align="left">Rodent ulcer</td>
</tr>
<tr>
<td align="left">B33..14</td>
<td align="left">Malignant neoplasm of sebaceous gland</td>
</tr>
<tr>
<td align="left">B33..15</td>
<td align="left">Malignant neoplasm of sweat gland</td>
</tr>
<tr>
<td align="left">B33..16</td>
<td align="left">Epithelioma basal cell</td>
</tr>
<tr>
<td align="left">B33X.00</td>
<td align="left">Malignant neoplasm overlapping lesion of skin</td>
</tr>
<tr>
<td align="left">B33y.00</td>
<td align="left">Malignant neoplasm of other specified skin sites</td>
</tr>
<tr>
<td align="left">B33z.00</td>
<td align="left">Malignant neoplasm of skin NOS</td>
</tr>
<tr>
<td align="left">B33z.11</td>
<td align="left">Squamous cell carcinoma of skin NOS</td>
</tr>
<tr>
<td align="left">BB2A.13</td>
<td align="left">[M]Squamous cell carcinoma of skin NOS</td>
</tr>
<tr>
<td align="left">BB30.00</td>
<td align="left">[M]Basal cell tumour</td>
</tr>
<tr>
<td align="left">BB31.00</td>
<td align="left">[M]Basal cell carcinoma NOS</td>
</tr>
<tr>
<td align="left">BB32.00</td>
<td align="left">[M]Multicentric basal cell carcinoma</td>
</tr>
<tr>
<td align="left">BB33.00</td>
<td align="left">[M]Basal cell carcinoma, morphoea type</td>
</tr>
<tr>
<td align="left">BB34.00</td>
<td align="left">[M]Basal cell carcinoma, fibroepithelial type</td>
</tr>
<tr>
<td align="left">BB35.00</td>
<td align="left">[M]Basosquamous carcinoma</td>
</tr>
<tr>
<td align="left">BB36.00</td>
<td align="left">[M]Metatypical carcinoma</td>
</tr>
<tr>
<td align="left">BB3..00</td>
<td align="left">[M]Basal cell neoplasms</td>
</tr>
<tr>
<td align="left">BB3C.00</td>
<td align="left">[M]Superficial basal cell carcinoma</td>
</tr>
<tr>
<td align="left">BB3D.00</td>
<td align="left">[M]Basal cell carcinoma, nodular</td>
</tr>
<tr>
<td align="left">BB3E.00</td>
<td align="left">[M]Basal cell carcinoma, micronodular</td>
</tr>
<tr>
<td align="left">BB3F.00</td>
<td align="left">[M]Basal cell carcinoma, infiltrative</td>
</tr>
<tr>
<td align="left">BB3G.00</td>
<td align="left">[M]Pigmented basal cell carcinoma</td>
</tr>
<tr>
<td align="left">BB3z.00</td>
<td align="left">[M]Basal cell neoplasm NOS</td>
</tr>
<tr>
<td align="left">BB60100</td>
<td align="left">[M]Skin appendage carcinoma</td>
</tr>
<tr>
<td align="left">BB61200</td>
<td align="left">[M]Sweat gland adenocarcinoma</td>
</tr>
<tr>
<td align="left">BB62100</td>
<td align="left">[M]Apocrine adenocarcinoma</td>
</tr>
<tr>
<td align="left">BB69100</td>
<td align="left">[M]Sebaceous adenocarcinoma</td>
</tr>
<tr>
<td align="left">Byu4200</td>
<td align="left">[X]Oth malignant neoplasm/skin of oth+unspecfd parts of face</td>
</tr>
<tr>
<td align="left">Byu4300</td>
<td align="left">[X]Malignant neoplasm of skin, unspecified</td>
</tr>
<tr>
<td align="left">Byu5A00</td>
<td align="left">[X]Malignant neoplasm overlapping lesion of skin</td>
</tr>
<tr>
<td align="left">ZV10y14</td>
<td align="left">[V]Personal history of malignant neoplasm of skin</td>
</tr>
</tbody>
</table>
<h4>Secondary care diagnoses (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//secondary_care/ICD_pri_skin.csv'>ICD_pri_skin.csv</a>)</h4>
<table>
<thead>
<tr>
<th>ICD-10 code</th>
<th>ICD-10 Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left">C44</td>
<td align="left">Other malignant neoplasms of skin</td>
</tr>
</tbody>
</table>
<h2>Primary Malignancy_Ovarian</h2>
<h4>Implementation</h4>
~~~
At the specified date, a patient is defined as having had Primary Malignancy Ovarian IF they meet the criteria for any of the following on or before the specified date. The earliest date on which the individual meets any of the following criteria on or before the specified date is defined as the first event date:
Primary care
1. Primary Malignancy_Ovarian diagnosis or history of diagnosis during a consultation
OR
Secondary care
1. ALL diagnoses of Primary Malignancy Ovarian or history of diagnosis during a hospitalization
~~~
<h4>Primary care (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//primary_care/CPRD_pri_ovarian.csv'>CPRD_pri_ovarian.csv</a>)</h4>
<table>
<thead>
<tr>
<th>Read code</th>
<th>Read Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left">B440.00</td>
<td align="left">Malignant neoplasm of ovary</td>
</tr>
<tr>
<td align="left">B440.11</td>
<td align="left">Cancer of ovary</td>
</tr>
<tr>
<td align="left">BB5j200</td>
<td align="left">[M]Endometrioid carcinoma</td>
</tr>
<tr>
<td align="left">BB5j500</td>
<td align="left">[M]Endometrioid adenofibroma, malignant</td>
</tr>
<tr>
<td align="left">BBQA100</td>
<td align="left">[M]Struma ovarii, malignant</td>
</tr>
<tr>
<td align="left">D212000</td>
<td align="left">Anaemia in ovarian carcinoma</td>
</tr>
<tr>
<td align="left">ZV10414</td>
<td align="left">[V]Personal history of malignant neoplasm of ovary</td>
</tr>
</tbody>
</table>
<h4>Secondary care diagnoses (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//secondary_care/ICD_pri_ovarian.csv'>ICD_pri_ovarian.csv</a>)</h4>
<table>
<thead>
<tr>
<th>ICD-10 code</th>
<th>ICD-10 Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left">C56</td>
<td align="left">Malignant neoplasm of ovary</td>
</tr>
</tbody>
</table>
<h2>Primary Malignancy_Pancreatic</h2>
<h4>Implementation</h4>
~~~
At the specified date, a patient is defined as having had Primary Malignancy Pancreatic IF they meet the criteria for any of the following on or before the specified date. The earliest date on which the individual meets any of the following criteria on or before the specified date is defined as the first event date:
Primary care
1. Primary Malignancy Pancreatic diagnosis or history of diagnosis during a consultation
OR
Secondary care
1. ALL diagnoses of Primary Malignancy Pancreatic or history of diagnosis during a hospitalization
~~~
<h4>Primary care (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//primary_care/CPRD_pri_pancr.csv'>CPRD_pri_pancr.csv</a>)</h4>
<table>
<thead>
<tr>
<th>Read code</th>
<th>Read Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left">B170.00</td>
<td align="left">Malignant neoplasm of head of pancreas</td>
</tr>
<tr>
<td align="left">B171.00</td>
<td align="left">Malignant neoplasm of body of pancreas</td>
</tr>
<tr>
<td align="left">B172.00</td>
<td align="left">Malignant neoplasm of tail of pancreas</td>
</tr>
<tr>
<td align="left">B173.00</td>
<td align="left">Malignant neoplasm of pancreatic duct</td>
</tr>
<tr>
<td align="left">B174.00</td>
<td align="left">Malignant neoplasm of Islets of Langerhans</td>
</tr>
<tr>
<td align="left">B175.00</td>
<td align="left">Malignant neoplasm, overlapping lesion of pancreas</td>
</tr>
<tr>
<td align="left">B17..00</td>
<td align="left">Malignant neoplasm of pancreas</td>
</tr>
<tr>
<td align="left">B17y000</td>
<td align="left">Malignant neoplasm of ectopic pancreatic tissue</td>
</tr>
<tr>
<td align="left">B17y.00</td>
<td align="left">Malignant neoplasm of other specified sites of pancreas</td>
</tr>
<tr>
<td align="left">B17yz00</td>
<td align="left">Malignant neoplasm of specified site of pancreas NOS</td>
</tr>
<tr>
<td align="left">B17z.00</td>
<td align="left">Malignant neoplasm of pancreas NOS</td>
</tr>
<tr>
<td align="left">BB5B100</td>
<td align="left">[M]Islet cell carcinoma</td>
</tr>
<tr>
<td align="left">BB5B300</td>
<td align="left">[M]Insulinoma, malignant</td>
</tr>
<tr>
<td align="left">BB5B500</td>
<td align="left">[M]Glucagonoma, malignant</td>
</tr>
<tr>
<td align="left">BB5B600</td>
<td align="left">[M]Mixed islet cell and exocrine adenocarcinoma</td>
</tr>
<tr>
<td align="left">BB5C100</td>
<td align="left">[M]Gastrinoma, malignant</td>
</tr>
</tbody>
</table>
<h4>Secondary care diagnoses (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//secondary_care/ICD_pri_pancr.csv'>ICD_pri_pancr.csv</a>)</h4>
<table>
<thead>
<tr>
<th>ICD-10 code</th>
<th>ICD-10 Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left">C25</td>
<td align="left">Malignant neoplasm of pancreas</td>
</tr>
</tbody>
</table>
<h2>Primary Malignancy_Prostate</h2>
<h4>Implementation</h4>
~~~
At the specified date, a patient is defined as having had 'Primary Malignancy_Prostate' IF they meet the criteria for any of the following on or before the specified date. The earliest date on which the individual meets any of the following criteria on or before the specified date is defined as the first event date:
Primary care
1. Primary Malignancy_Prostate diagnosis or history of diagnosis during a consultation
OR
Secondary care
1. ALL diagnoses of Primary Malignancy_Prostate or history of diagnosis during a hospitalization
~~~
<h4>Primary care (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//primary_care/CPRD_pri_prost.csv'>CPRD_pri_prost.csv</a>)</h4>
<table>
<thead>
<tr>
<th>Read code</th>
<th>Read Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="right">1427000</td>
<td align="left">H/O: prostate cancer</td>
</tr>
<tr>
<td align="left">4M00.00</td>
<td align="left">Gleason prostate grade 2-4 (low)</td>
</tr>
<tr>
<td align="left">4M01.00</td>
<td align="left">Gleason prostate grade 5-7 (medium)</td>
</tr>
<tr>
<td align="left">4M02.00</td>
<td align="left">Gleason prostate grade 8-10 (high)</td>
</tr>
<tr>
<td align="left">4M0..00</td>
<td align="left">Gleason grading of prostate cancer</td>
</tr>
<tr>
<td align="left">7B20000</td>
<td align="left">Radical cystoprostatourethrectomy</td>
</tr>
<tr>
<td align="left">7B20200</td>
<td align="left">Radical cystoprostatectomy</td>
</tr>
<tr>
<td align="left">7B36000</td>
<td align="left">Radical prostatectomy - unspecified excision of pelvic nodes</td>
</tr>
<tr>
<td align="left">7B36500</td>
<td align="left">Radical prostatectomy without pelvic node excision</td>
</tr>
<tr>
<td align="left">7B36600</td>
<td align="left">Radical prostatectomy with pelvic node sampling</td>
</tr>
<tr>
<td align="left">7B36700</td>
<td align="left">Radical prostatectomy with pelvic lymphadenectomy</td>
</tr>
<tr>
<td align="left">B46..00</td>
<td align="left">Malignant neoplasm of prostate</td>
</tr>
<tr>
<td align="left">ZV10415</td>
<td align="left">[V]Personal history of malignant neoplasm of prostate</td>
</tr>
</tbody>
</table>
<h4>Secondary care diagnoses (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//secondary_care/ICD_pri_prost.csv'>ICD_pri_prost.csv</a>)</h4>
<table>
<thead>
<tr>
<th>ICD-10 code</th>
<th>ICD-10 Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left">C61</td>
<td align="left">Malignant neoplasm of prostate</td>
</tr>
</tbody>
</table>
<h2>Primary Malignancy_Stomach</h2>
<h4>Implementation</h4>
~~~
At the specified date, a patient is defined as having had Primary Malignancy Stomach IF they meet the criteria for any of the following on or before the specified date. The earliest date on which the individual meets any of the following criteria on or before the specified date is defined as the first event date:
Primary care
1. Primary Malignancy Stomach diagnosis or history of diagnosis during a consultation
OR
Secondary care
1. ALL diagnoses of Primary Malignancy Stomach or history of diagnosis during a hospitalization
~~~
<h4>Primary care (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//primary_care/CPRD_pri_stomach.csv'>CPRD_pri_stomach.csv</a>)</h4>
<table>
<thead>
<tr>
<th>Read code</th>
<th>Read Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left">B110000</td>
<td align="left">Malignant neoplasm of cardiac orifice of stomach</td>
</tr>
<tr>
<td align="left">B110100</td>
<td align="left">Malignant neoplasm of cardio-oesophageal junction of stomach</td>
</tr>
<tr>
<td align="left">B110111</td>
<td align="left">Malignant neoplasm of gastro-oesophageal junction</td>
</tr>
<tr>
<td align="left">B110.00</td>
<td align="left">Malignant neoplasm of cardia of stomach</td>
</tr>
<tr>
<td align="left">B110z00</td>
<td align="left">Malignant neoplasm of cardia of stomach NOS</td>
</tr>
<tr>
<td align="left">B111000</td>
<td align="left">Malignant neoplasm of prepylorus of stomach</td>
</tr>
<tr>
<td align="left">B111100</td>
<td align="left">Malignant neoplasm of pyloric canal of stomach</td>
</tr>
<tr>
<td align="left">B111.00</td>
<td align="left">Malignant neoplasm of pylorus of stomach</td>
</tr>
<tr>
<td align="left">B111z00</td>
<td align="left">Malignant neoplasm of pylorus of stomach NOS</td>
</tr>
<tr>
<td align="left">B112.00</td>
<td align="left">Malignant neoplasm of pyloric antrum of stomach</td>
</tr>
<tr>
<td align="left">B113.00</td>
<td align="left">Malignant neoplasm of fundus of stomach</td>
</tr>
<tr>
<td align="left">B114.00</td>
<td align="left">Malignant neoplasm of body of stomach</td>
</tr>
<tr>
<td align="left">B115.00</td>
<td align="left">Malignant neoplasm of lesser curve of stomach unspecified</td>
</tr>
<tr>
<td align="left">B116.00</td>
<td align="left">Malignant neoplasm of greater curve of stomach unspecified</td>
</tr>
<tr>
<td align="left">B117.00</td>
<td align="left">Malignant neoplasm, overlapping lesion of stomach</td>
</tr>
<tr>
<td align="left">B118.00</td>
<td align="left">Siewert type II adenocarcinoma</td>
</tr>
<tr>
<td align="left">B119.00</td>
<td align="left">Siewert type III adenocarcinoma</td>
</tr>
<tr>
<td align="left">B11..00</td>
<td align="left">Malignant neoplasm of stomach</td>
</tr>
<tr>
<td align="left">B11y000</td>
<td align="left">Malignant neoplasm of anterior wall of stomach NEC</td>
</tr>
<tr>
<td align="left">B11y100</td>
<td align="left">Malignant neoplasm of posterior wall of stomach NEC</td>
</tr>
<tr>
<td align="left">B11y.00</td>
<td align="left">Malignant neoplasm of other specified site of stomach</td>
</tr>
<tr>
<td align="left">B11yz00</td>
<td align="left">Malignant neoplasm of other specified site of stomach NOS</td>
</tr>
<tr>
<td align="left">B11z.00</td>
<td align="left">Malignant neoplasm of stomach NOS</td>
</tr>
<tr>
<td align="left">ZV10018</td>
<td align="left">[V]Personal history of malignant neoplasm of stomach</td>
</tr>
</tbody>
</table>
<h4>Secondary care diagnoses (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//secondary_care/ICD_pri_stomach.csv'>ICD_pri_stomach.csv</a>)</h4>
<table>
<thead>
<tr>
<th>ICD-10 code</th>
<th>ICD-10 Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left">C16</td>
<td align="left">Malignant neoplasm of stomach</td>
</tr>
</tbody>
</table>
<h2>Primary Malignancy_Testicular</h2>
<h4>Implementation</h4>
~~~
At the specified date, a patient is defined as having had Primary Malignancy Testicular IF they meet the criteria for any of the following on or before the specified date. The earliest date on which the individual meets any of the following criteria on or before the specified date is defined as the first event date:
Primary care
1. Primary Malignancy Testicular diagnosis or history of diagnosis during a consultation
OR
Secondary care
1. ALL diagnoses of Primary Malignancy Testicular or history of diagnosis during a hospitalization
~~~
<h4>Primary care (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//primary_care/CPRD_pri_testis.csv'>CPRD_pri_testis.csv</a>)</h4>
<table>
<thead>
<tr>
<th>Read code</th>
<th>Read Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left">B470200</td>
<td align="left">Seminoma of undescended testis</td>
</tr>
<tr>
<td align="left">B470300</td>
<td align="left">Teratoma of undescended testis</td>
</tr>
<tr>
<td align="left">B470.00</td>
<td align="left">Malignant neoplasm of undescended testis</td>
</tr>
<tr>
<td align="left">B470z00</td>
<td align="left">Malignant neoplasm of undescended testis NOS</td>
</tr>
<tr>
<td align="left">B471000</td>
<td align="left">Seminoma of descended testis</td>
</tr>
<tr>
<td align="left">B471100</td>
<td align="left">Teratoma of descended testis</td>
</tr>
<tr>
<td align="left">B471.00</td>
<td align="left">Malignant neoplasm of descended testis</td>
</tr>
<tr>
<td align="left">B471z00</td>
<td align="left">Malignant neoplasm of descended testis NOS</td>
</tr>
<tr>
<td align="left">B47..00</td>
<td align="left">Malignant neoplasm of testis</td>
</tr>
<tr>
<td align="left">B47z.00</td>
<td align="left">Malignant neoplasm of testis NOS</td>
</tr>
<tr>
<td align="left">B47z.11</td>
<td align="left">Seminoma of testis</td>
</tr>
<tr>
<td align="left">B47z.12</td>
<td align="left">Teratoma of testis</td>
</tr>
<tr>
<td align="left">ZV10416</td>
<td align="left">[V]Personal history of malignant neoplasm of testis</td>
</tr>
</tbody>
</table>
<h4>Secondary care diagnoses (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//secondary_care/ICD_pri_testis.csv'>ICD_pri_testis.csv</a>)</h4>
<table>
<thead>
<tr>
<th>ICD-10 code</th>
<th>ICD-10 Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left">C62</td>
<td align="left">Malignant neoplasm of testis</td>
</tr>
</tbody>
</table>
<h2>Primary Malignancy_Thyroid</h2>
<h4>Implementation</h4>
~~~
At the specified date, a patient is defined as having had Primary Malignancy Thyroid IF they meet the criteria for any of the following on or before the specified date. The earliest date on which the individual meets any of the following criteria on or before the specified date is defined as the first event date:
Primary care
1. Primary Malignancy Thyroid diagnosis or history of diagnosis during a consultation
OR
Secondary care
1. ALL diagnoses of Primary Malignancy Thyroid or history of diagnosis during a hospitalization
~~~
<h4>Primary care (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//primary_care/CPRD_pri_thyroid.csv'>CPRD_pri_thyroid.csv</a>)</h4>
<table>
<thead>
<tr>
<th>Read code</th>
<th>Read Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left">B53..00</td>
<td align="left">Malignant neoplasm of thyroid gland</td>
</tr>
<tr>
<td align="left">ZV10y15</td>
<td align="left">[V]Personal history of malignant neoplasm of thyroid</td>
</tr>
</tbody>
</table>
<h4>Secondary care diagnoses (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//secondary_care/ICD_pri_thyroid.csv'>ICD_pri_thyroid.csv</a>)</h4>
<table>
<thead>
<tr>
<th>ICD-10 code</th>
<th>ICD-10 Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left">C73</td>
<td align="left">Malignant neoplasm of thyroid gland</td>
</tr>
</tbody>
</table>
<h2>Primary Malignancy_Uterine</h2>
<h4>Implementation</h4>
~~~
At the specified date, a patient is defined as having had Primary Malignancy Uterine IF they meet the criteria for any of the following on or before the specified date. The earliest date on which the individual meets any of the following criteria on or before the specified date is defined as the first event date:
Primary care
1. Primary Malignancy Uterine diagnosis or history of diagnosis during a consultation
OR
Secondary care
1. ALL diagnoses of Primary Malignancy Uterine or history of diagnosis during a hospitalization
~~~
<h4>Primary care (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//primary_care/CPRD_pri_uterine.csv'>CPRD_pri_uterine.csv</a>)</h4>
<table>
<thead>
<tr>
<th>Read code</th>
<th>Read Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left">B40..00</td>
<td align="left">Malignant neoplasm of uterus, part unspecified</td>
</tr>
<tr>
<td align="left">B430000</td>
<td align="left">Malignant neoplasm of cornu of corpus uteri</td>
</tr>
<tr>
<td align="left">B430100</td>
<td align="left">Malignant neoplasm of fundus of corpus uteri</td>
</tr>
<tr>
<td align="left">B430200</td>
<td align="left">Malignant neoplasm of endometrium of corpus uteri</td>
</tr>
<tr>
<td align="left">B430211</td>
<td align="left">Malignant neoplasm of endometrium</td>
</tr>
<tr>
<td align="left">B430300</td>
<td align="left">Malignant neoplasm of myometrium of corpus uteri</td>
</tr>
<tr>
<td align="left">B430.00</td>
<td align="left">Malignant neoplasm of corpus uteri, excluding isthmus</td>
</tr>
<tr>
<td align="left">B430z00</td>
<td align="left">Malignant neoplasm of corpus uteri NOS</td>
</tr>
<tr>
<td align="left">B431000</td>
<td align="left">Malignant neoplasm of lower uterine segment</td>
</tr>
<tr>
<td align="left">B431.00</td>
<td align="left">Malignant neoplasm of isthmus of uterine body</td>
</tr>
<tr>
<td align="left">B431z00</td>
<td align="left">Malignant neoplasm of isthmus of uterine body NOS</td>
</tr>
<tr>
<td align="left">B432.00</td>
<td align="left">Malignant neoplasm of overlapping lesion of corpus uteri</td>
</tr>
<tr>
<td align="left">B43..00</td>
<td align="left">Malignant neoplasm of body of uterus</td>
</tr>
<tr>
<td align="left">B43y.00</td>
<td align="left">Malignant neoplasm of other site of uterine body</td>
</tr>
<tr>
<td align="left">B43z.00</td>
<td align="left">Malignant neoplasm of body of uterus NOS</td>
</tr>
<tr>
<td align="left">ZV10417</td>
<td align="left">[V]Personal history of malignant neoplasm of uterine body</td>
</tr>
</tbody>
</table>
<h4>Secondary care diagnoses (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//secondary_care/ICD_pri_uterine.csv'>ICD_pri_uterine.csv</a>)</h4>
<table>
<thead>
<tr>
<th>ICD-10 code</th>
<th>ICD-10 Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left">C54</td>
<td align="left">Malignant neoplasm of corpus uteri</td>
</tr>
<tr>
<td align="left">C55</td>
<td align="left">Malignant neoplasm of uterus, part unspecified</td>
</tr>
</tbody>
</table>
<h2>Primary Malignancy_biliary tract</h2>
<h4>Implementation</h4>
~~~
At the specified date, a patient is defined as having had Primary Malignancy biliary tract IF they meet the criteria for any of the following on or before the specified date. The earliest date on which the individual meets any of the following criteria on or before the specified date is defined as the first event date:
Primary care
1. Primary Malignancy biliary tract diagnosis or history of diagnosis during a consultation
OR
Secondary care
1. ALL diagnoses of Primary Malignancy biliary tract or history of diagnosis during a hospitalization
~~~
<h4>Primary care (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//primary_care/CPRD_pri_biliary.csv'>CPRD_pri_biliary.csv</a>)</h4>
<table>
<thead>
<tr>
<th>Read code</th>
<th>Read Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left">B151000</td>
<td align="left">Malignant neoplasm of interlobular bile ducts</td>
</tr>
<tr>
<td align="left">B151200</td>
<td align="left">Malignant neoplasm of intrahepatic biliary passages</td>
</tr>
<tr>
<td align="left">B151400</td>
<td align="left">Malignant neoplasm of intrahepatic gall duct</td>
</tr>
<tr>
<td align="left">B151.00</td>
<td align="left">Malignant neoplasm of intrahepatic bile ducts</td>
</tr>
<tr>
<td align="left">B151z00</td>
<td align="left">Malignant neoplasm of intrahepatic bile ducts NOS</td>
</tr>
<tr>
<td align="left">B161000</td>
<td align="left">Malignant neoplasm of cystic duct</td>
</tr>
<tr>
<td align="left">B161100</td>
<td align="left">Malignant neoplasm of hepatic duct</td>
</tr>
<tr>
<td align="left">B161200</td>
<td align="left">Malignant neoplasm of common bile duct</td>
</tr>
<tr>
<td align="left">B161211</td>
<td align="left">Carcinoma common bile duct</td>
</tr>
<tr>
<td align="left">B161300</td>
<td align="left">Malignant neoplasm of sphincter of Oddi</td>
</tr>
<tr>
<td align="left">B161.00</td>
<td align="left">Malignant neoplasm of extrahepatic bile ducts</td>
</tr>
<tr>
<td align="left">B161z00</td>
<td align="left">Malignant neoplasm of extrahepatic bile ducts NOS</td>
</tr>
<tr>
<td align="left">B162.00</td>
<td align="left">Malignant neoplasm of ampulla of Vater</td>
</tr>
<tr>
<td align="left">B163.00</td>
<td align="left">Malignant neoplasm, overlapping lesion of biliary tract</td>
</tr>
<tr>
<td align="left">BB5D100</td>
<td align="left">[M]Cholangiocarcinoma</td>
</tr>
<tr>
<td align="left">BB5D111</td>
<td align="left">[M]Bile duct carcinoma</td>
</tr>
<tr>
<td align="left">BB5D300</td>
<td align="left">[M]Bile duct cystadenocarcinoma</td>
</tr>
<tr>
<td align="left">BB5D700</td>
<td align="left">[M]Combined hepatocellular carcinoma and cholangiocarcinoma</td>
</tr>
<tr>
<td align="left">BB5D711</td>
<td align="left">[M]Hepatocholangiocarcinoma</td>
</tr>
</tbody>
</table>
<h4>Secondary care diagnoses (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//secondary_care/ICD_pri_biliary.csv'>ICD_pri_biliary.csv</a>)</h4>
<table>
<thead>
<tr>
<th>ICD-10 code</th>
<th>ICD-10 Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left">C22.1</td>
<td align="left">Malignant neoplasm: Intrahepatic bile duct carcinoma</td>
</tr>
<tr>
<td align="left">C24</td>
<td align="left">Malignant neoplasm of other and unspecified parts of biliary tract</td>
</tr>
</tbody>
</table>
<h2>Primary Malignancy_colorectal and anus</h2>
<h4>Implementation</h4>
~~~
At the specified date, a patient is defined as having had Primary Malignancy colorectal and anus IF they meet the criteria for any of the following on or before the specified date. The earliest date on which the individual meets any of the following criteria on or before the specified date is defined as the first event date:
Primary care
1. Primary Malignancy colorectal and anus diagnosis or history of diagnosis during a consultation
OR
Secondary care
1. ALL diagnoses of Primary Malignancy colorectal and anus or history of diagnosis during a hospitalization
~~~
<h4>Primary care (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//primary_care/CPRD_pri_bowel.csv'>CPRD_pri_bowel.csv</a>)</h4>
<table>
<thead>
<tr>
<th>Read code</th>
<th>Read Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left">B130.00</td>
<td align="left">Malignant neoplasm of hepatic flexure of colon</td>
</tr>
<tr>
<td align="left">B131.00</td>
<td align="left">Malignant neoplasm of transverse colon</td>
</tr>
<tr>
<td align="left">B132.00</td>
<td align="left">Malignant neoplasm of descending colon</td>
</tr>
<tr>
<td align="left">B133.00</td>
<td align="left">Malignant neoplasm of sigmoid colon</td>
</tr>
<tr>
<td align="left">B134.00</td>
<td align="left">Malignant neoplasm of caecum</td>
</tr>
<tr>
<td align="left">B134.11</td>
<td align="left">Carcinoma of caecum</td>
</tr>
<tr>
<td align="left">B135.00</td>
<td align="left">Malignant neoplasm of appendix</td>
</tr>
<tr>
<td align="left">B136.00</td>
<td align="left">Malignant neoplasm of ascending colon</td>
</tr>
<tr>
<td align="left">B137.00</td>
<td align="left">Malignant neoplasm of splenic flexure of colon</td>
</tr>
<tr>
<td align="left">B138.00</td>
<td align="left">Malignant neoplasm, overlapping lesion of colon</td>
</tr>
<tr>
<td align="left">B139.00</td>
<td align="left">Hereditary nonpolyposis colon cancer</td>
</tr>
<tr>
<td align="left">B13..00</td>
<td align="left">Malignant neoplasm of colon</td>
</tr>
<tr>
<td align="left">B13y.00</td>
<td align="left">Malignant neoplasm of other specified sites of colon</td>
</tr>
<tr>
<td align="left">B13z.00</td>
<td align="left">Malignant neoplasm of colon NOS</td>
</tr>
<tr>
<td align="left">B13z.11</td>
<td align="left">Colonic cancer</td>
</tr>
<tr>
<td align="left">B140.00</td>
<td align="left">Malignant neoplasm of rectosigmoid junction</td>
</tr>
<tr>
<td align="left">B141.00</td>
<td align="left">Malignant neoplasm of rectum</td>
</tr>
<tr>
<td align="left">B141.11</td>
<td align="left">Carcinoma of rectum</td>
</tr>
<tr>
<td align="left">B141.12</td>
<td align="left">Rectal carcinoma</td>
</tr>
<tr>
<td align="left">B142000</td>
<td align="left">Malignant neoplasm of cloacogenic zone</td>
</tr>
<tr>
<td align="left">B142.00</td>
<td align="left">Malignant neoplasm of anal canal</td>
</tr>
<tr>
<td align="left">B142.11</td>
<td align="left">Anal carcinoma</td>
</tr>
<tr>
<td align="left">B143.00</td>
<td align="left">Malignant neoplasm of anus unspecified</td>
</tr>
<tr>
<td align="left">B14..00</td>
<td align="left">Malignant neoplasm of rectum, rectosigmoid junction and anus</td>
</tr>
<tr>
<td align="left">B14y.00</td>
<td align="left">Malig neop other site rectum, rectosigmoid junction and anus</td>
</tr>
<tr>
<td align="left">B14z.00</td>
<td align="left">Malignant neoplasm rectum,rectosigmoid junction and anus NOS</td>
</tr>
<tr>
<td align="left">B1z0.11</td>
<td align="left">Cancer of bowel</td>
</tr>
<tr>
<td align="left">ZV10011</td>
<td align="left">[V]Personal history of malignant neoplasm of anus</td>
</tr>
<tr>
<td align="left">ZV10014</td>
<td align="left">[V]Personal history of malignant neoplasm of large intestine</td>
</tr>
<tr>
<td align="left">ZV10017</td>
<td align="left">[V]Personal history of malignant neoplasm of rectum</td>
</tr>
</tbody>
</table>
<h4>Secondary care diagnoses (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//secondary_care/ICD_pri_bowel.csv'>ICD_pri_bowel.csv</a>)</h4>
<table>
<thead>
<tr>
<th>ICD-10 code</th>
<th>ICD-10 Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left">C18</td>
<td align="left">Malignant neoplasm of colon</td>
</tr>
<tr>
<td align="left">C19</td>
<td align="left">Malignant neoplasm of rectosigmoid junction</td>
</tr>
<tr>
<td align="left">C20</td>
<td align="left">Malignant neoplasm of rectum</td>
</tr>
<tr>
<td align="left">C21</td>
<td align="left">Malignant neoplasm of anus and anal canal</td>
</tr>
</tbody>
</table>
<h2>Primary or Idiopathic Thrombocytopaenia</h2>
<h4>Implementation</h4>
~~~
At the specified date, a patient is defined as having had Primary or Idiopathic Thrombocytopaenia IF they meet the criteria for any of the following on or before the specified date. The earliest date on which the individual meets any of the following criteria on or before the specified date is defined as the first event date:
Primary care
1. Primary or Idiopathic Thrombocytopaenia diagnosis or history of diagnosis during a consultation
OR
Secondary care (ICD10)
1. ALL diagnoses of Primary or Idiopathic Thrombocytopaenia or history of diagnosis during a hospitalization
~~~
<h4>Primary care (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//primary_care/CPRD_pri_thrombocytopaenia.csv'>CPRD_pri_thrombocytopaenia.csv</a>)</h4>
<table>
<thead>
<tr>
<th>Read code</th>
<th>Read Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left">42P2.11</td>
<td align="left">Auto-immune thrombocytopenia</td>
</tr>
<tr>
<td align="left">D313000</td>
<td align="left">Idiopathic thrombocytopenic purpura</td>
</tr>
<tr>
<td align="left">D313011</td>
<td align="left">Idiopathic purpura</td>
</tr>
<tr>
<td align="left">D313012</td>
<td align="left">ITP - idiopathic thrombocytopenic purpura</td>
</tr>
<tr>
<td align="left">D313100</td>
<td align="left">Congenital thrombocytopenic purpura</td>
</tr>
<tr>
<td align="left">D313111</td>
<td align="left">Hereditary thrombocytopenia NEC</td>
</tr>
<tr>
<td align="left">D313300</td>
<td align="left">[X]Essential thrombocytopenia NOS</td>
</tr>
<tr>
<td align="left">D313.00</td>
<td align="left">Primary thrombocytopenia</td>
</tr>
<tr>
<td align="left">D313.11</td>
<td align="left">Evan's syndrome</td>
</tr>
<tr>
<td align="left">D313.12</td>
<td align="left">Idiopathic thrombocytopenic purpura</td>
</tr>
<tr>
<td align="left">D313.13</td>
<td align="left">Idiopathic purpura</td>
</tr>
<tr>
<td align="left">D313.14</td>
<td align="left">Megakaryocytic hypoplasia</td>
</tr>
<tr>
<td align="left">D313.15</td>
<td align="left">Thrombocytopenic purpura</td>
</tr>
<tr>
<td align="left">D313y00</td>
<td align="left">Other specified primary thrombocytopenia</td>
</tr>
<tr>
<td align="left">D313z00</td>
<td align="left">Primary thrombocytopenia NOS</td>
</tr>
<tr>
<td align="left">D313z11</td>
<td align="left">Essential thrombocytopenia NOS</td>
</tr>
<tr>
<td align="left">Dyu3200</td>
<td align="left">[X]Other primary thrombocytopenia</td>
</tr>
</tbody>
</table>
<h4>Secondary care diagnoses (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//secondary_care/ICD_pri_thrombocytopaenia.csv'>ICD_pri_thrombocytopaenia.csv</a>)</h4>
<table>
<thead>
<tr>
<th>ICD-10 code</th>
<th>ICD-10 Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left">D69.3</td>
<td align="left">Idiopathic thrombocytopenic purpura</td>
</tr>
<tr>
<td align="left">D69.4</td>
<td align="left">Other primary thrombocytopenia</td>
</tr>
</tbody>
</table>
<h2>Primary pulmonary hypertension</h2>
<h4>Implementation</h4>
~~~
At the specified date, a patient is defined as having had 'Primary pulmonary hypertension' IF they meet the criteria for any of the following on or before the specified date. The earliest date on which the individual meets any of the following criteria on or before the specified date is defined as the first event date:
Primary care
1. 'Primary pulmonary hypertension' diagnosis or history of diagnosis during a consultation
OR
Secondary care (ICD10)
1. ALL diagnoses of 'Primary pulmonary hypertension' or history of diagnosis during a hospitalization
~~~
<h4>Primary care (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//primary_care/CPRD_prim_pulm_htn.csv'>CPRD_prim_pulm_htn.csv</a>)</h4>
<table>
<thead>
<tr>
<th>Read code</th>
<th>Read Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left">G410.00</td>
<td align="left">Primary pulmonary hypertension</td>
</tr>
</tbody>
</table>
<h4>Secondary care diagnoses (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//secondary_care/ICD_prim_pulm_htn.csv'>ICD_prim_pulm_htn.csv</a>)</h4>
<table>
<thead>
<tr>
<th>ICD-10 code</th>
<th>ICD-10 Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left">I27.0</td>
<td align="left">Primary pulmonary hypertension</td>
</tr>
</tbody>
</table>
<h2>Psoriasis</h2>
<h4>Implementation</h4>
~~~
At the specified date, a patient is defined as having had 'Psoriasis' IF they meet the criteria for any of the following on or before the specified date. The earliest date on which the individual meets any of the following criteria on or before the specified date is defined as the first event date:
Primary care
1. 'Psoriasis' diagnosis or history of diagnosis during a consultation
OR
Secondary care (ICD10)
1. ALL diagnoses of 'Psoriasis' or history of diagnosis during a hospitalization
~~~
<h4>Primary care (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//primary_care/CPRD_psoriasis.csv'>CPRD_psoriasis.csv</a>)</h4>
<table>
<thead>
<tr>
<th>Read code</th>
<th>Read Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left">14F2.00</td>
<td align="left">H/O: psoriasis</td>
</tr>
<tr>
<td align="left">M160000</td>
<td align="left">Psoriasis spondylitica</td>
</tr>
<tr>
<td align="left">M160100</td>
<td align="left">Distal interphalangeal psoriatic arthropathy</td>
</tr>
<tr>
<td align="left">M160200</td>
<td align="left">Arthritis mutilans</td>
</tr>
<tr>
<td align="left">M160.00</td>
<td align="left">Psoriatic arthropathy</td>
</tr>
<tr>
<td align="left">M160.11</td>
<td align="left">Psoriatic arthritis</td>
</tr>
<tr>
<td align="left">M160z00</td>
<td align="left">Psoriatic arthropathy NOS</td>
</tr>
<tr>
<td align="left">M161000</td>
<td align="left">Psoriasis unspecified</td>
</tr>
<tr>
<td align="left">M161100</td>
<td align="left">Psoriasis annularis</td>
</tr>
<tr>
<td align="left">M161200</td>
<td align="left">Psoriasis circinata</td>
</tr>
<tr>
<td align="left">M161300</td>
<td align="left">Psoriasis diffusa</td>
</tr>
<tr>
<td align="left">M161400</td>
<td align="left">Psoriasis discoidea</td>
</tr>
<tr>
<td align="left">M161500</td>
<td align="left">Psoriasis geographica</td>
</tr>
<tr>
<td align="left">M161600</td>
<td align="left">Guttate psoriasis</td>
</tr>
<tr>
<td align="left">M161700</td>
<td align="left">Psoriasis gyrata</td>
</tr>
<tr>
<td align="left">M161800</td>
<td align="left">Psoriasis inveterata</td>
</tr>
<tr>
<td align="left">M161900</td>
<td align="left">Psoriasis ostracea</td>
</tr>
<tr>
<td align="left">M161A00</td>
<td align="left">Psoriasis palmaris</td>
</tr>
<tr>
<td align="left">M161B00</td>
<td align="left">Psoriasis plantaris</td>
</tr>
<tr>
<td align="left">M161C00</td>
<td align="left">Psoriasis punctata</td>
</tr>
<tr>
<td align="left">M161D00</td>
<td align="left">Pustular psoriasis</td>
</tr>
<tr>
<td align="left">M161E00</td>
<td align="left">Psoriasis universalis</td>
</tr>
<tr>
<td align="left">M161F00</td>
<td align="left">Psoriasis vulgaris</td>
</tr>
<tr>
<td align="left">M161F11</td>
<td align="left">Chronic large plaque psoriasis</td>
</tr>
<tr>
<td align="left">M161H00</td>
<td align="left">Erythrodermic psoriasis</td>
</tr>
<tr>
<td align="left">M161J00</td>
<td align="left">Flexural psoriasis</td>
</tr>
<tr>
<td align="left">M161.00</td>
<td align="left">Other psoriasis</td>
</tr>
<tr>
<td align="left">M161z00</td>
<td align="left">Psoriasis NOS</td>
</tr>
<tr>
<td align="left">M166.00</td>
<td align="left">Palmoplantar pustular psoriasis</td>
</tr>
<tr>
<td align="left">M16..00</td>
<td align="left">Psoriasis and similar disorders</td>
</tr>
<tr>
<td align="left">M16y000</td>
<td align="left">Scalp psoriasis</td>
</tr>
<tr>
<td align="left">M16y.00</td>
<td align="left">Other psoriasis and similar disorders</td>
</tr>
<tr>
<td align="left">M16z.00</td>
<td align="left">Psoriasis and similar disorders NOS</td>
</tr>
<tr>
<td align="left">Myu3000</td>
<td align="left">[X]Other psoriasis</td>
</tr>
<tr>
<td align="left">N045200</td>
<td align="left">Juvenile arthritis in psoriasis</td>
</tr>
<tr>
<td align="left">Nyu1300</td>
<td align="left">[X]Other psoriatic arthropathies</td>
</tr>
</tbody>
</table>
<h4>Secondary care diagnoses (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//secondary_care/ICD_psoriasis.csv'>ICD_psoriasis.csv</a>)</h4>
<table>
<thead>
<tr>
<th>ICD-10 code</th>
<th>ICD-10 Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left">L40</td>
<td align="left">Psoriasis</td>
</tr>
<tr>
<td align="left">M07.0</td>
<td align="left">Distal interphalangeal psoriatic arthropathy</td>
</tr>
<tr>
<td align="left">M07.1</td>
<td align="left">Arthritis mutilans</td>
</tr>
<tr>
<td align="left">M07.2</td>
<td align="left">Psoriatic spondylitis</td>
</tr>
<tr>
<td align="left">M07.3</td>
<td align="left">Other psoriatic arthropathies</td>
</tr>
<tr>
<td align="left">M09.0</td>
<td align="left">Juvenile arthritis in psoriasis</td>
</tr>
</tbody>
</table>
<h2>Psoriatic arthropathy</h2>
<h4>Implementation</h4>
~~~
At the specified date, a patient is defined as having had Psoriatic arthropathy IF they meet the criteria for any of the following on or before the specified date. The earliest date on which the individual meets any of the following criteria on or before the specified date is defined as the first event date:
Primary care
1. Psoriatic arthropathy diagnosis or history of diagnosis during a consultation
OR
Secondary care (ICD10)
1. ALL diagnoses of Psoriatic arthropathy or history of diagnosis during a hospitalization
~~~
<h4>Primary care (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//primary_care/CPRD_PSA.csv'>CPRD_PSA.csv</a>)</h4>
<table>
<thead>
<tr>
<th>Read code</th>
<th>Read Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left">M160000</td>
<td align="left">Psoriasis spondylitica</td>
</tr>
<tr>
<td align="left">M160100</td>
<td align="left">Distal interphalangeal psoriatic arthropathy</td>
</tr>
<tr>
<td align="left">M160200</td>
<td align="left">Arthritis mutilans</td>
</tr>
<tr>
<td align="left">M160.00</td>
<td align="left">Psoriatic arthropathy</td>
</tr>
<tr>
<td align="left">M160.11</td>
<td align="left">Psoriatic arthritis</td>
</tr>
<tr>
<td align="left">M160z00</td>
<td align="left">Psoriatic arthropathy NOS</td>
</tr>
<tr>
<td align="left">Nyu1300</td>
<td align="left">[X]Other psoriatic arthropathies</td>
</tr>
</tbody>
</table>
<h4>Secondary care diagnoses (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//secondary_care/ICD_PSA.csv'>ICD_PSA.csv</a>)</h4>
<table>
<thead>
<tr>
<th>ICD-10 code</th>
<th>ICD-10 Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left">M07.0</td>
<td align="left">Distal interphalangeal psoriatic arthropathy</td>
</tr>
<tr>
<td align="left">M07.1</td>
<td align="left">Arthritis mutilans</td>
</tr>
<tr>
<td align="left">M07.2</td>
<td align="left">Psoriatic spondylitis</td>
</tr>
<tr>
<td align="left">M07.3</td>
<td align="left">Other psoriatic arthropathies</td>
</tr>
<tr>
<td align="left">L40.5</td>
<td align="left">Arthropathic psoriasis</td>
</tr>
</tbody>
</table>
<h2>Ptosis of eyelid</h2>
<h4>Implementation</h4>
~~~
At the specified date, a patient is defined as having had 'Ptosis of eyelid' of eyelid IF they meet the criteria for any of the following on or before the specified date. The earliest date on which the individual meets any of the following criteria on or before the specified date is defined as the first event date:
Primary care
1. 'Ptosis of eyelid' of eyelid diagnosis or history of diagnosis during a consultation
OR
Secondary care (ICD10)
1. ALL diagnoses of 'Ptosis of eyelid' of eyelid or history of diagnosis during a hospitalization
OR
Secondary care (OPCS4)
1. ALL procedures for 'Ptosis of eyelid' during a hospitalization
~~~
<h4>Primary care (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//primary_care/CPRD_ptosis.csv'>CPRD_ptosis.csv</a>)</h4>
<table>
<thead>
<tr>
<th>Read code</th>
<th>Read Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left">2BE2.00</td>
<td align="left">O/E - ptosis present</td>
</tr>
<tr>
<td align="left">2BE..00</td>
<td align="left">O/E - ptosis</td>
</tr>
<tr>
<td align="left">2BE3.00</td>
<td align="left">O/E - Horner's syndrome</td>
</tr>
<tr>
<td align="left">2BEZ.00</td>
<td align="left">O/E - ptosis NOS</td>
</tr>
<tr>
<td align="left">7218000.0</td>
<td align="left">Correction of eyelid ptosis using levator muscle technique</td>
</tr>
<tr>
<td align="left">7218100.0</td>
<td align="left">Correction of eyelid ptosis using frontalis muscle technique</td>
</tr>
<tr>
<td align="left">7218200.0</td>
<td align="left">Correction of ptosis of eyelid using sling of fascia</td>
</tr>
<tr>
<td align="left">7218300.0</td>
<td align="left">Correction of eyelid ptosis using superior rectus technique</td>
</tr>
<tr>
<td align="left">7218500.0</td>
<td align="left">Correction of eyelid ptosis using aponeurosis technique</td>
</tr>
<tr>
<td align="left">7218.00</td>
<td align="left">Correction of ptosis of eyelid</td>
</tr>
<tr>
<td align="left">7218y00</td>
<td align="left">Other specified correction of ptosis of eyelid</td>
</tr>
<tr>
<td align="left">7218z00</td>
<td align="left">Correction of ptosis of eyelid NOS</td>
</tr>
<tr>
<td align="left">F4E3000</td>
<td align="left">Unspecified ptosis of eyelid</td>
</tr>
<tr>
<td align="left">F4E3100</td>
<td align="left">Paralytic ptosis</td>
</tr>
<tr>
<td align="left">F4E3200</td>
<td align="left">Myogenic ptosis</td>
</tr>
<tr>
<td align="left">F4E3300</td>
<td align="left">Mechanical ptosis</td>
</tr>
<tr>
<td align="left">F4E3.00</td>
<td align="left">Ptosis of eyelid</td>
</tr>
<tr>
<td align="left">F4E3z00</td>
<td align="left">Ptosis of eyelid NOS</td>
</tr>
<tr>
<td align="left">P360.00</td>
<td align="left">Congenital ptosis</td>
</tr>
<tr>
<td align="left">P360.11</td>
<td align="left">Blepharoptosis</td>
</tr>
</tbody>
</table>
<h4>Secondary care diagnoses (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//secondary_care/ICD_ptosis.csv'>ICD_ptosis.csv</a>)</h4>
<table>
<thead>
<tr>
<th>ICD-10 code</th>
<th>ICD-10 Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left">H02.4</td>
<td align="left">Ptosis of eyelid</td>
</tr>
</tbody>
</table>
<h4>Secondary care procedures (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//secondary_care/OPCS_ptosis.csv'>OPCS_ptosis.csv</a>)</h4>
<table>
<thead>
<tr>
<th>OPCS-4 code</th>
<th>OPCS-4 Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left">C18.1</td>
<td align="left">Correction of ptosis of eyelid using levator muscle technique</td>
</tr>
<tr>
<td align="left">C18.2</td>
<td align="left">Correction of ptosis of eyelid using frontalis muscle technique</td>
</tr>
<tr>
<td align="left">C18.3</td>
<td align="left">Correction of ptosis of eyelid using sling of fascia</td>
</tr>
<tr>
<td align="left">C18.4</td>
<td align="left">Correction of ptosis of eyelid using superior rectus muscle technique</td>
</tr>
<tr>
<td align="left">C18.5</td>
<td align="left">Tarsomullerectomy</td>
</tr>
<tr>
<td align="left">C18.6</td>
<td align="left">Correction of ptosis of eyelid using aponeurosis technique</td>
</tr>
<tr>
<td align="left">C18.8</td>
<td align="left">Other specified correction of ptosis of eyelid</td>
</tr>
<tr>
<td align="left">C18.9</td>
<td align="left">Unspecified correction of ptosis of eyelid</td>
</tr>
</tbody>
</table>
<h2>Pulmonary collapse (excl pneumothorax)</h2>
<h4>Implementation</h4>
~~~
At the specified date, a patient is defined as having had 'Pulmonary collapse (excl pneumothorax)' (excl pneumothorax) IF they meet the criteria for any of the following on or before the specified date. The earliest date on which the individual meets any of the following criteria on or before the specified date is defined as the first event date:
Primary care
1. 'Pulmonary collapse (excl pneumothorax)' (excl pneumothorax) diagnosis or history of diagnosis during a consultation
OR
Secondary care (ICD10)
1. ALL diagnoses of 'Pulmonary collapse (excl pneumothorax)' (excl pneumothorax) or history of diagnosis during a hospitalization
~~~
<h4>Primary care (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//primary_care/CPRD_pulm_collapse.csv'>CPRD_pulm_collapse.csv</a>)</h4>
<table>
<thead>
<tr>
<th>Read code</th>
<th>Read Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left">23E4.11</td>
<td align="left">O/E - collapse - lung</td>
</tr>
<tr>
<td align="left">H580.00</td>
<td align="left">Pulmonary collapse with atelectasis</td>
</tr>
<tr>
<td align="left">H580.11</td>
<td align="left">Atelectasis</td>
</tr>
<tr>
<td align="left">H580.12</td>
<td align="left">Collapse of lung</td>
</tr>
</tbody>
</table>
<h4>Secondary care diagnoses (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//secondary_care/ICD_pulm_collapse.csv'>ICD_pulm_collapse.csv</a>)</h4>
<table>
<thead>
<tr>
<th>ICD-10 code</th>
<th>ICD-10 Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left">J98.1</td>
<td align="left">Pulmonary collapse</td>
</tr>
</tbody>
</table>
<h2>Pulmonary embolism</h2>
<h4>Implementation</h4>
~~~
At the specified date, a patient is defined as having had 'Pulmonary embolism' IF they meet the criteria for any of the following on or before the specified date. The earliest date on which the individual meets any of the following criteria on or before the specified date is defined as the first event date:
Primary care
1. 'Pulmonary embolism' diagnosis or history of diagnosis during a consultation
OR
Secondary care (ICD10)
1. ALL diagnoses of 'Pulmonary embolism' or history of diagnosis during a hospitalization
~~~
<h4>Primary care (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//primary_care/CPRD_PE.csv'>CPRD_PE.csv</a>)</h4>
<table>
<thead>
<tr>
<th>Read code</th>
<th>Read Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left">14AC.00</td>
<td align="left">H/O: pulmonary embolus</td>
</tr>
<tr>
<td align="left">7A09300</td>
<td align="left">Open embolectomy of pulmonary artery</td>
</tr>
<tr>
<td align="left">7A09311</td>
<td align="left">Trendelenburg pulmonary embolectomy</td>
</tr>
<tr>
<td align="left">7A0A100</td>
<td align="left">Percutaneous transluminal embolectomy of pulmonary artery</td>
</tr>
<tr>
<td align="left">7A0B000</td>
<td align="left">Pulmonary thromboendarterectomy</td>
</tr>
<tr>
<td align="left">G401000</td>
<td align="left">Post operative pulmonary embolus</td>
</tr>
<tr>
<td align="left">G401100</td>
<td align="left">Recurrent pulmonary embolism</td>
</tr>
<tr>
<td align="left">G401.00</td>
<td align="left">Pulmonary embolism</td>
</tr>
<tr>
<td align="left">G401.12</td>
<td align="left">Pulmonary embolus</td>
</tr>
<tr>
<td align="left">ZV12900</td>
<td align="left">[V] Personal history of pulmonary embolism</td>
</tr>
</tbody>
</table>
<h4>Secondary care diagnoses (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//secondary_care/ICD_PE.csv'>ICD_PE.csv</a>)</h4>
<table>
<thead>
<tr>
<th>ICD-10 code</th>
<th>ICD-10 Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left">I26</td>
<td align="left">Pulmonary embolism</td>
</tr>
</tbody>
</table>
<h2>Raised LDL-C</h2>
<h4>Implementation</h4>
~~~
At the specified date, a patient is defined as having had Raised LDL Cholesterol IF they meet the criteria for any of the following on or before the specified date.
Primary care
1. IF the highest value EVER recorded for LDL Cholesterol for a patient on or before the specified date is greater than:
a) serum: 3 mmol/L
OR
b) serum: 116.01 mg/dL
OR
c) plasma: 2.9126 mmol/L
OR
d) plasma: 112.6311 mg/dL
~~~
<h2>Raised Total Cholesterol</h2>
<h4>Implementation</h4>
~~~
At the specified date, a patient is defined as having had 'Raised Total Cholesterol' IF they meet the criteria for any of the following on or before the specified date.
Primary care
1. IF the highest value EVER recorded for Total Cholesterol for a patient on or before the specified date is greater than:
a) serum: 5 mmol/L
OR
b) serum: 193.35 mg/dL
OR
c) plasma: 4.8544 mmol/L
OR
d) plasma: 187.7184 mg/dL
~~~
<h2>Raised Triglycerides</h2>
<h4>Implementation</h4>
~~~
At the specified date, a patient is defined as having had 'Raised Triglycerides' IF they meet the criteria for any of the following on or before the specified date.
Primary care
1. IF the highest value EVER recorded for Triglycerides for a patient on or before the specified date is greater than:
a) serum: 1.7 mmol/L
OR
b) serum: 150.569 mg/dL
OR
c) plasma: 1.6521 mmol/L
OR
d) plasma: 146.3256 mg/dL
~~~
<h2>Raynaud's syndrome</h2>
<h4>Implementation</h4>
~~~
At the specified date, a patient is defined as having had Raynaud's syndrome IF they meet the criteria for any of the following on or before the specified date. The earliest date on which the individual meets any of the following criteria on or before the specified date is defined as the first event date:
Primary care
1. Raynaud's syndrome diagnosis or history of diagnosis during a consultation
OR
Secondary care (ICD10)
1. ALL diagnoses of Raynaud's syndrome or history of diagnosis during a hospitalization
~~~
<h4>Primary care (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//primary_care/CPRD_raynauds.csv'>CPRD_raynauds.csv</a>)</h4>
<table>
<thead>
<tr>
<th>Read code</th>
<th>Read Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left">G730000</td>
<td align="left">Raynaud's disease</td>
</tr>
<tr>
<td align="left">G730100</td>
<td align="left">Raynaud's phenomenon</td>
</tr>
<tr>
<td align="left">G730111</td>
<td align="left">Vibratory white finger</td>
</tr>
<tr>
<td align="left">G730.00</td>
<td align="left">Raynaud's syndrome</td>
</tr>
<tr>
<td align="left">G730z00</td>
<td align="left">Raynaud's syndrome NOS</td>
</tr>
</tbody>
</table>
<h4>Secondary care diagnoses (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//secondary_care/ICD_raynauds.csv'>ICD_raynauds.csv</a>)</h4>
<table>
<thead>
<tr>
<th>ICD-10 code</th>
<th>ICD-10 Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left">I73.0</td>
<td align="left">Raynaud's syndrome</td>
</tr>
</tbody>
</table>
<h2>Respiratory distress of newborn</h2>
<h4>Implementation</h4>
~~~
At the specified date, a patient is defined as having had Respiratory distress of newborn IF they meet the criteria for any of the following on or before the specified date. The earliest date on which the individual meets any of the following criteria on or before the specified date is defined as the first event date:
Primary care
1. Respiratory distress of newborn diagnosis or history of diagnosis during a consultation AND IF the patient is aged < 1y at the first event date
OR
Secondary care
1. ALL diagnoses of Respiratory distress of newborn or history of diagnosis during a hospitalization AND IF the patient is aged < 1y at the first event date
~~~
<h4>Primary care (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//primary_care/CPRD_RDN.csv'>CPRD_RDN.csv</a>)</h4>
<table>
<thead>
<tr>
<th>Read code</th>
<th>Read Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left">Q30..00</td>
<td align="left">Respiratory distress syndrome</td>
</tr>
<tr>
<td align="left">Q30..11</td>
<td align="left">Hyaline membrane disease</td>
</tr>
<tr>
<td align="left">Q30..12</td>
<td align="left">Pulmonary hypoperfusion syndrome of newborn</td>
</tr>
<tr>
<td align="left">Q316.00</td>
<td align="left">Newborn transitory tachypnoea</td>
</tr>
<tr>
<td align="left">Q316.11</td>
<td align="left">Wet lung syndrome in newborn</td>
</tr>
<tr>
<td align="left">Q31y200</td>
<td align="left">Perinatal respiratory distress NOS</td>
</tr>
<tr>
<td align="left">Qyu3000</td>
<td align="left">[X]Other respiratory distress of newborn</td>
</tr>
</tbody>
</table>
<h4>Secondary care diagnoses (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//secondary_care/ICD_RDN.csv'>ICD_RDN.csv</a>)</h4>
<table>
<thead>
<tr>
<th>ICD-10 code</th>
<th>ICD-10 Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left">P22</td>
<td align="left">Respiratory distress of newborn</td>
</tr>
</tbody>
</table>
<h2>Respiratory failure</h2>
<h4>Implementation</h4>
~~~
At the specified date, a patient is defined as having had 'Respiratory failure' IF they meet the criteria for any of the following on or before the specified date. The earliest date on which the individual meets any of the following criteria on or before the specified date is defined as the first event date:
Primary care
1. Other 'Respiratory failure' diagnosis or history of diagnosis during a consultation
OR
Secondary care (ICD10)
1. ALL diagnoses of 'Respiratory failure' or history of diagnosis during a hospitalization
~~~
<h4>Primary care (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//primary_care/CPRD_resp_failure.csv'>CPRD_resp_failure.csv</a>)</h4>
<table>
<thead>
<tr>
<th>Read code</th>
<th>Read Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left">Fy04.00</td>
<td align="left">Sleep-related respiratory failure</td>
</tr>
<tr>
<td align="left">H590.00</td>
<td align="left">Acute respiratory failure</td>
</tr>
<tr>
<td align="left">H591.00</td>
<td align="left">Chronic respiratory failure</td>
</tr>
<tr>
<td align="left">H592.00</td>
<td align="left">Chronic type 1 respiratory failure</td>
</tr>
<tr>
<td align="left">H593.00</td>
<td align="left">Chronic type 2 respiratory failure</td>
</tr>
<tr>
<td align="left">H59..00</td>
<td align="left">Respiratory failure</td>
</tr>
<tr>
<td align="left">R2y1.00</td>
<td align="left">[D]Respiratory failure</td>
</tr>
<tr>
<td align="left">R2y1z00</td>
<td align="left">[D]Respiratory failure NOS</td>
</tr>
</tbody>
</table>
<h4>Secondary care diagnoses (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//secondary_care/ICD_resp_failure.csv'>ICD_resp_failure.csv</a>)</h4>
<table>
<thead>
<tr>
<th>ICD-10 code</th>
<th>ICD-10 Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left">J96</td>
<td align="left">Respiratory failure, not elsewhere classified</td>
</tr>
</tbody>
</table>
<h2>Retinal detachments and breaks</h2>
<h4>Implementation</h4>
~~~
At the specified date, a patient is defined as having had 'Retinal detachments and breaks's and breaks IF they meet the criteria for any of the following on or before the specified date. The earliest date on which the individual meets any of the following criteria on or before the specified date is defined as the first event date:
Primary care
1. 'Retinal detachments and breaks's and breaks diagnosis or history of diagnosis during a consultation
OR
Secondary care
1. ALL diagnoses of 'Retinal detachments and breaks's and breaks or history of diagnosis during a hospitalization
OR
Secondary care (OPCS4)
1. ALL procedures for 'Retinal detachments and breaks's during a hospitalization
~~~
<h4>Primary care (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//primary_care/CPRD_retinal_detach.csv'>CPRD_retinal_detach.csv</a>)</h4>
<table>
<thead>
<tr>
<th>Read code</th>
<th>Read Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="right">1481</td>
<td align="left">H/O: retinal detachment</td>
</tr>
<tr>
<td align="right">7271000</td>
<td align="left">Xenon photocoagulation of retina for detachment</td>
</tr>
<tr>
<td align="right">7271100</td>
<td align="left">Laser photocoagulation of retina for detachment</td>
</tr>
<tr>
<td align="right">7271</td>
<td align="left">Photocoagulation of retina for detachment</td>
</tr>
<tr>
<td align="left">7271y00</td>
<td align="left">Other specified photocoagulation of retina for detachment</td>
</tr>
<tr>
<td align="left">7271z00</td>
<td align="left">Photocoagulation of retina for detachment NOS</td>
</tr>
<tr>
<td align="left">F410000</td>
<td align="left">Unspecified retinal detachment with retinal defect</td>
</tr>
<tr>
<td align="left">F410100</td>
<td align="left">New partial retinal detachment with single defect</td>
</tr>
<tr>
<td align="left">F410200</td>
<td align="left">New partial retinal detachment with multiple defects</td>
</tr>
<tr>
<td align="left">F410300</td>
<td align="left">New partial retinal detachment with giant tear defect</td>
</tr>
<tr>
<td align="left">F410400</td>
<td align="left">New partial retinal detachment with retinal dialysis</td>
</tr>
<tr>
<td align="left">F410500</td>
<td align="left">Recent total retinal detachment</td>
</tr>
<tr>
<td align="left">F410600</td>
<td align="left">Recent subtotal retinal detachment</td>
</tr>
<tr>
<td align="left">F410700</td>
<td align="left">Old partial retinal detachment</td>
</tr>
<tr>
<td align="left">F410800</td>
<td align="left">Old total retinal detachment</td>
</tr>
<tr>
<td align="left">F410900</td>
<td align="left">Old subtotal retinal detachment</td>
</tr>
<tr>
<td align="left">F410.00</td>
<td align="left">Retinal detachment with retinal defect</td>
</tr>
<tr>
<td align="left">F410z00</td>
<td align="left">Retinal detachment with defect NOS</td>
</tr>
<tr>
<td align="left">F413100</td>
<td align="left">Retinal round hole without detachment</td>
</tr>
<tr>
<td align="left">F413200</td>
<td align="left">Horseshoe retinal tear without detachment</td>
</tr>
<tr>
<td align="left">F413300</td>
<td align="left">Multiple retinal defects without detachment</td>
</tr>
<tr>
<td align="left">F413400</td>
<td align="left">Retinal break</td>
</tr>
<tr>
<td align="left">F413.00</td>
<td align="left">Retinal defects without detachment</td>
</tr>
<tr>
<td align="left">F413z00</td>
<td align="left">Retinal defects without detachment NOS</td>
</tr>
<tr>
<td align="left">F41..00</td>
<td align="left">Retinal detachments and defects</td>
</tr>
<tr>
<td align="left">F41..11</td>
<td align="left">Retinal tears</td>
</tr>
<tr>
<td align="left">F41y000</td>
<td align="left">Traction retinal detachment</td>
</tr>
<tr>
<td align="left">F41y.00</td>
<td align="left">Other forms of retinal detachment</td>
</tr>
<tr>
<td align="left">F41yz00</td>
<td align="left">Other retinal detachments NOS</td>
</tr>
<tr>
<td align="left">F41z.00</td>
<td align="left">Retinal detachment NOS</td>
</tr>
<tr>
<td align="left">FyuF400</td>
<td align="left">[X]Other retinal detachments</td>
</tr>
</tbody>
</table>
<h4>Secondary care diagnoses (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//secondary_care/ICD_retinal_detach.csv'>ICD_retinal_detach.csv</a>)</h4>
<table>
<thead>
<tr>
<th>ICD-10 code</th>
<th>ICD-10 Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left">H33.0</td>
<td align="left">Retinal detachment with retinal break</td>
</tr>
<tr>
<td align="left">H33.3</td>
<td align="left">Retinal breaks without detachment</td>
</tr>
<tr>
<td align="left">H33.4</td>
<td align="left">Traction detachment of retina</td>
</tr>
<tr>
<td align="left">H33.5</td>
<td align="left">Other retinal detachments</td>
</tr>
</tbody>
</table>
<h4>Secondary care procedures (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//secondary_care/OPCS_retinal_detach.csv'>OPCS_retinal_detach.csv</a>)</h4>
<table>
<thead>
<tr>
<th>OPCS-4 code</th>
<th>OPCS-4 Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left">C81</td>
<td align="left">Photocoagulation of retina for detachment</td>
</tr>
<tr>
<td align="left">C81.1</td>
<td align="left">Xenon photocoagulation of retina for detachment</td>
</tr>
<tr>
<td align="left">C81.2</td>
<td align="left">Laser photocoagulation of retina for detachment</td>
</tr>
<tr>
<td align="left">C81.8</td>
<td align="left">Other specified photocoagulation of retina for detachment</td>
</tr>
<tr>
<td align="left">C81.9</td>
<td align="left">Unspecified photocoagulation of retina for detachment</td>
</tr>
</tbody>
</table>
<h2>Retinal vascular occlusions</h2>
<h4>Implementation</h4>
~~~
At the specified date, a patient is defined as having had 'Retinal vascular occlusions' IF they meet the criteria for any of the following on or before the specified date. The earliest date on which the individual meets any of the following criteria on or before the specified date is defined as the first event date:
Primary care
1. 'Retinal vascular occlusions' diagnosis or history of diagnosis during a consultation
OR
Secondary care
1. ALL diagnoses of 'Retinal vascular occlusions' or history of diagnosis during a hospitalization
~~~
<h4>Primary care (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//primary_care/CPRD_retinal_vasc_occl.csv'>CPRD_retinal_vasc_occl.csv</a>)</h4>
<table>
<thead>
<tr>
<th>Read code</th>
<th>Read Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left">F423000</td>
<td align="left">Unspecified retinal vascular occlusion</td>
</tr>
<tr>
<td align="left">F423100</td>
<td align="left">Central retinal artery occlusion</td>
</tr>
<tr>
<td align="left">F423200</td>
<td align="left">Retinal arterial branch occlusion</td>
</tr>
<tr>
<td align="left">F423211</td>
<td align="left">Branch retinal artery occlusion</td>
</tr>
<tr>
<td align="left">F423300</td>
<td align="left">Retinal microembolism</td>
</tr>
<tr>
<td align="left">F423400</td>
<td align="left">Hollenhorst plaque</td>
</tr>
<tr>
<td align="left">F423500</td>
<td align="left">Retinal partial arterial occlusion NOS</td>
</tr>
<tr>
<td align="left">F423700</td>
<td align="left">Retinal transient arterial occlusion NOS</td>
</tr>
<tr>
<td align="left">F423800</td>
<td align="left">Central retinal vein occlusion</td>
</tr>
<tr>
<td align="left">F423811</td>
<td align="left">Retinal vein thrombosis</td>
</tr>
<tr>
<td align="left">F423900</td>
<td align="left">Retinal venous branch occlusion</td>
</tr>
<tr>
<td align="left">F423911</td>
<td align="left">Branch retinal vein occlusion</td>
</tr>
<tr>
<td align="left">F423A00</td>
<td align="left">Retinal venous engorgement</td>
</tr>
<tr>
<td align="left">F423.00</td>
<td align="left">Retinal vascular occlusion</td>
</tr>
<tr>
<td align="left">F423z00</td>
<td align="left">Retinal vascular occlusion NOS</td>
</tr>
<tr>
<td align="left">F42y700</td>
<td align="left">Retinal cotton wool spots</td>
</tr>
<tr>
<td align="left">FyuF500</td>
<td align="left">[X]Other retinal artery occlusions</td>
</tr>
<tr>
<td align="left">FyuF600</td>
<td align="left">[X]Other retinal vascular occlusions</td>
</tr>
</tbody>
</table>
<h4>Secondary care diagnoses (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//secondary_care/ICD_retinal_vasc_occl.csv'>ICD_retinal_vasc_occl.csv</a>)</h4>
<table>
<thead>
<tr>
<th>ICD-10 code</th>
<th>ICD-10 Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left">H34</td>
<td align="left">Retinal vascular occlusions</td>
</tr>
</tbody>
</table>
<h2>Rheumatic fever</h2>
<h4>Implementation</h4>
~~~
At the specified date, a patient is defined as having had 'Rheumatic fever' IF they meet the criteria for any of the following on or before the specified date. The earliest date on which the individual meets any of the following criteria on or before the specified date is defined as the first event date:
Primary care
1. 'Rheumatic fever' diagnosis or history of diagnosis during a consultation
OR
Secondary care
1. ALL diagnoses of 'Rheumatic fever' or history of diagnosis during a hospitalization
~~~
<h4>Primary care (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//primary_care/CPRD_rh_fever.csv'>CPRD_rh_fever.csv</a>)</h4>
<table>
<thead>
<tr>
<th>Read code</th>
<th>Read Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left">14A1.00</td>
<td align="left">H/O: rheumatic fever</td>
</tr>
<tr>
<td align="left">G00..00</td>
<td align="left">Rheumatic fever without heart involvement</td>
</tr>
<tr>
<td align="left">G010.00</td>
<td align="left">Acute rheumatic pericarditis</td>
</tr>
<tr>
<td align="left">G011.00</td>
<td align="left">Acute rheumatic endocarditis</td>
</tr>
<tr>
<td align="left">G012.00</td>
<td align="left">Acute rheumatic myocarditis</td>
</tr>
<tr>
<td align="left">G01..00</td>
<td align="left">Rheumatic fever with heart involvement</td>
</tr>
<tr>
<td align="left">G01y000</td>
<td align="left">Acute rheumatic pancarditis</td>
</tr>
<tr>
<td align="left">G01y.00</td>
<td align="left">Other acute rheumatic heart disease</td>
</tr>
<tr>
<td align="left">G01yz00</td>
<td align="left">Other acute rheumatic heart disease NOS</td>
</tr>
<tr>
<td align="left">G01z.00</td>
<td align="left">Acute rheumatic heart disease NOS</td>
</tr>
<tr>
<td align="left">G020.00</td>
<td align="left">Rheumatic chorea with heart involvement</td>
</tr>
<tr>
<td align="left">G021.00</td>
<td align="left">Rheumatic chorea without mention of heart involvement</td>
</tr>
<tr>
<td align="left">G02..00</td>
<td align="left">Rheumatic chorea</td>
</tr>
<tr>
<td align="left">G02..11</td>
<td align="left">Sydenham's chorea</td>
</tr>
<tr>
<td align="left">G02z.00</td>
<td align="left">Rheumatic chorea NOS</td>
</tr>
<tr>
<td align="left">G0...00</td>
<td align="left">Acute rheumatic fever</td>
</tr>
<tr>
<td align="left">G0y..00</td>
<td align="left">Other specified acute rheumatic fever</td>
</tr>
<tr>
<td align="left">G0z..00</td>
<td align="left">Acute rheumatic fever NOS</td>
</tr>
<tr>
<td align="left">G100.00</td>
<td align="left">Adherent rheumatic pericardium</td>
</tr>
<tr>
<td align="left">G102.00</td>
<td align="left">Chronic rheumatic myopericarditis</td>
</tr>
<tr>
<td align="left">G10..00</td>
<td align="left">Chronic rheumatic pericarditis</td>
</tr>
<tr>
<td align="left">G110.11</td>
<td align="left">Rheumatic mitral stenosis</td>
</tr>
<tr>
<td align="left">G111.00</td>
<td align="left">Rheumatic mitral insufficiency</td>
</tr>
<tr>
<td align="left">G111.11</td>
<td align="left">Mitral incompetence - rheumatic</td>
</tr>
<tr>
<td align="left">G111.12</td>
<td align="left">Mitral regurgitation - rheumatic</td>
</tr>
<tr>
<td align="left">G11..11</td>
<td align="left">Rheumatic mitral valve disease</td>
</tr>
<tr>
<td align="left">G120.00</td>
<td align="left">Rheumatic aortic stenosis</td>
</tr>
<tr>
<td align="left">G121.00</td>
<td align="left">Rheumatic aortic insufficiency</td>
</tr>
<tr>
<td align="left">G121.11</td>
<td align="left">Aortic incompetence - rheumatic</td>
</tr>
<tr>
<td align="left">G121.12</td>
<td align="left">Aortic regurgitation - rheumatic</td>
</tr>
<tr>
<td align="left">G122.00</td>
<td align="left">Rheumatic aortic stenosis with insufficiency</td>
</tr>
<tr>
<td align="left">G12..00</td>
<td align="left">Rheumatic aortic valve disease</td>
</tr>
<tr>
<td align="left">G12z.00</td>
<td align="left">Rheumatic aortic valve disease NOS</td>
</tr>
<tr>
<td align="left">G140000</td>
<td align="left">Rheumatic tricuspid stenosis</td>
</tr>
<tr>
<td align="left">G140100</td>
<td align="left">Rheumatic tricuspid insufficiency</td>
</tr>
<tr>
<td align="left">G140111</td>
<td align="left">Tricuspid regurgitation - rheumatic</td>
</tr>
<tr>
<td align="left">G140112</td>
<td align="left">Tricuspid incompetence - rheumatic</td>
</tr>
<tr>
<td align="left">G140200</td>
<td align="left">Rheumatic tricuspid stenosis and insufficiency</td>
</tr>
<tr>
<td align="left">G14021X</td>
<td align="left">Rheumatic tricuspid stenosis and regurgitation</td>
</tr>
<tr>
<td align="left">G14021Y</td>
<td align="left">Rheumatic tricuspid stenosis and incompetence</td>
</tr>
<tr>
<td align="left">G140z00</td>
<td align="left">Rheumatic tricuspid valve disease NOS</td>
</tr>
<tr>
<td align="left">G141000</td>
<td align="left">Rheumatic pulmonary stenosis</td>
</tr>
<tr>
<td align="left">G141100</td>
<td align="left">Rheumatic pulmonary insufficiency</td>
</tr>
<tr>
<td align="left">G141200</td>
<td align="left">Rheumatic pulmonary stenosis and insufficiency</td>
</tr>
<tr>
<td align="left">G141.00</td>
<td align="left">Rheumatic pulmonary valve disease</td>
</tr>
<tr>
<td align="left">G141z00</td>
<td align="left">Rheumatic pulmonary valve disease NOS</td>
</tr>
<tr>
<td align="left">G14..00</td>
<td align="left">Other chronic rheumatic endocardial disease</td>
</tr>
<tr>
<td align="left">G14z.00</td>
<td align="left">Rheumatic endocarditis NOS</td>
</tr>
<tr>
<td align="left">G14z.11</td>
<td align="left">Rheumatic valvulitis, chronic NOS</td>
</tr>
<tr>
<td align="left">G1...00</td>
<td align="left">Chronic rheumatic heart disease</td>
</tr>
<tr>
<td align="left">G1y0.00</td>
<td align="left">Rheumatic myocarditis</td>
</tr>
<tr>
<td align="left">G1y..00</td>
<td align="left">Other specified chronic rheumatic heart disease</td>
</tr>
<tr>
<td align="left">G1yz000</td>
<td align="left">Rheumatic heart disease unspecified</td>
</tr>
<tr>
<td align="left">G1yz100</td>
<td align="left">Rheumatic left ventricular failure</td>
</tr>
<tr>
<td align="left">G1yz.00</td>
<td align="left">Other and unspecified rheumatic heart disease</td>
</tr>
<tr>
<td align="left">G1yzz00</td>
<td align="left">Other rheumatic heart disease NOS</td>
</tr>
<tr>
<td align="left">G1z..00</td>
<td align="left">Chronic rheumatic heart disease NOS</td>
</tr>
<tr>
<td align="left">GA0..00</td>
<td align="left">Carditis due to rheumatic fever</td>
</tr>
<tr>
<td align="left">GA...00</td>
<td align="left">Rheumatic heart disease</td>
</tr>
<tr>
<td align="left">Gyu0000</td>
<td align="left">[X]Other acute rheumatic heart disease</td>
</tr>
<tr>
<td align="left">Gyu0.00</td>
<td align="left">[X]Acute rheumatic fever</td>
</tr>
<tr>
<td align="left">Gyu1100</td>
<td align="left">[X]Other rheumatic aortic valve diseases</td>
</tr>
<tr>
<td align="left">H571.00</td>
<td align="left">Rheumatic pneumonia</td>
</tr>
<tr>
<td align="left">M15y600</td>
<td align="left">Erythema marginatum in acute rheumatic fever</td>
</tr>
</tbody>
</table>
<h4>Secondary care diagnoses (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//secondary_care/ICD_rh_fever.csv'>ICD_rh_fever.csv</a>)</h4>
<table>
<thead>
<tr>
<th>ICD-10 code</th>
<th>ICD-10 Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left">I00</td>
<td align="left">Rheumatic fever without mention of heart involvement</td>
</tr>
<tr>
<td align="left">I01</td>
<td align="left">Rheumatic fever with heart involvement</td>
</tr>
<tr>
<td align="left">I02</td>
<td align="left">Rheumatic chorea</td>
</tr>
<tr>
<td align="left">I05</td>
<td align="left">Rheumatic mitral valve diseases</td>
</tr>
<tr>
<td align="left">I06</td>
<td align="left">Rheumatic aortic valve diseases</td>
</tr>
<tr>
<td align="left">I07</td>
<td align="left">Rheumatic tricuspid valve diseases</td>
</tr>
<tr>
<td align="left">I09</td>
<td align="left">Other rheumatic heart diseases</td>
</tr>
</tbody>
</table>
<h2>Rheumatic valve dz</h2>
<h4>Implementation</h4>
~~~
At the specified date, a patient is defined as having had 'Rheumatic valve dz' IF they meet the criteria for any of the following on or before the specified date. The earliest date on which the individual meets any of the following criteria on or before the specified date is defined as the first event date:
Primary care
1. 'Rheumatic valve dz' diagnosis or history of diagnosis during a consultation
OR
Secondary care (ICD10)
1. ALL diagnoses of 'Rheumatic valve dz' or history of diagnosis during a hospitalization
~~~
<h4>Primary care (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//primary_care/CPRD_Rh_valve.csv'>CPRD_Rh_valve.csv</a>)</h4>
<table>
<thead>
<tr>
<th>Read code</th>
<th>Read Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left">G110.00</td>
<td align="left">Mitral stenosis</td>
</tr>
<tr>
<td align="left">G110.11</td>
<td align="left">Rheumatic mitral stenosis</td>
</tr>
<tr>
<td align="left">G111.00</td>
<td align="left">Rheumatic mitral insufficiency</td>
</tr>
<tr>
<td align="left">G111.11</td>
<td align="left">Mitral incompetence - rheumatic</td>
</tr>
<tr>
<td align="left">G111.12</td>
<td align="left">Mitral regurgitation - rheumatic</td>
</tr>
<tr>
<td align="left">G112.00</td>
<td align="left">Mitral stenosis with insufficiency</td>
</tr>
<tr>
<td align="left">G112.12</td>
<td align="left">Mitral stenosis with incompetence</td>
</tr>
<tr>
<td align="left">G112.13</td>
<td align="left">Mitral stenosis with regurgitation</td>
</tr>
<tr>
<td align="left">G11..11</td>
<td align="left">Rheumatic mitral valve disease</td>
</tr>
<tr>
<td align="left">G120.00</td>
<td align="left">Rheumatic aortic stenosis</td>
</tr>
<tr>
<td align="left">G121.00</td>
<td align="left">Rheumatic aortic insufficiency</td>
</tr>
<tr>
<td align="left">G121.11</td>
<td align="left">Aortic incompetence - rheumatic</td>
</tr>
<tr>
<td align="left">G121.12</td>
<td align="left">Aortic regurgitation - rheumatic</td>
</tr>
<tr>
<td align="left">G122.00</td>
<td align="left">Rheumatic aortic stenosis with insufficiency</td>
</tr>
<tr>
<td align="left">G12..00</td>
<td align="left">Rheumatic aortic valve disease</td>
</tr>
<tr>
<td align="left">G12z.00</td>
<td align="left">Rheumatic aortic valve disease NOS</td>
</tr>
<tr>
<td align="left">G140000</td>
<td align="left">Rheumatic tricuspid stenosis</td>
</tr>
<tr>
<td align="left">G140100</td>
<td align="left">Rheumatic tricuspid insufficiency</td>
</tr>
<tr>
<td align="left">G140111</td>
<td align="left">Tricuspid regurgitation - rheumatic</td>
</tr>
<tr>
<td align="left">G140112</td>
<td align="left">Tricuspid incompetence - rheumatic</td>
</tr>
<tr>
<td align="left">G140200</td>
<td align="left">Rheumatic tricuspid stenosis and insufficiency</td>
</tr>
<tr>
<td align="left">G14021X</td>
<td align="left">Rheumatic tricuspid stenosis and regurgitation</td>
</tr>
<tr>
<td align="left">G14021Y</td>
<td align="left">Rheumatic tricuspid stenosis and incompetence</td>
</tr>
<tr>
<td align="left">G140z00</td>
<td align="left">Rheumatic tricuspid valve disease NOS</td>
</tr>
<tr>
<td align="left">G141000</td>
<td align="left">Rheumatic pulmonary stenosis</td>
</tr>
<tr>
<td align="left">G141100</td>
<td align="left">Rheumatic pulmonary insufficiency</td>
</tr>
<tr>
<td align="left">G141200</td>
<td align="left">Rheumatic pulmonary stenosis and insufficiency</td>
</tr>
<tr>
<td align="left">G141.00</td>
<td align="left">Rheumatic pulmonary valve disease</td>
</tr>
<tr>
<td align="left">G141z00</td>
<td align="left">Rheumatic pulmonary valve disease NOS</td>
</tr>
<tr>
<td align="left">G14z.11</td>
<td align="left">Rheumatic valvulitis, chronic NOS</td>
</tr>
<tr>
<td align="left">Gyu1100</td>
<td align="left">[X]Other rheumatic aortic valve diseases</td>
</tr>
</tbody>
</table>
<h4>Secondary care diagnoses (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//secondary_care/ICD_Rh_valve.csv'>ICD_Rh_valve.csv</a>)</h4>
<table>
<thead>
<tr>
<th>ICD-10 code</th>
<th>ICD-10 Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left">I05</td>
<td align="left">Rheumatic mitral valve diseases</td>
</tr>
<tr>
<td align="left">I06</td>
<td align="left">Rheumatic aortic valve diseases</td>
</tr>
<tr>
<td align="left">I07</td>
<td align="left">Rheumatic tricuspid valve diseases</td>
</tr>
</tbody>
</table>
<h2>Rheumatoid Arthritis</h2>
<h4>Implementation</h4>
~~~
At the specified date, a patient is defined as having had 'Rheumatoid Arthritis' IF they meet the criteria for any of the following on or before the specified date. The earliest date on which the individual meets any of the following criteria on or before the specified date is defined as the first event date:
Primary care
1. 'Rheumatoid Arthritis' diagnosis or history of diagnosis during a consultation
OR
Secondary care (ICD10)
1. ALL diagnoses of 'Rheumatoid Arthritis' or history of diagnosis during a hospitalization
~~~
<h4>Primary care (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//primary_care/CPRD_RhA.csv'>CPRD_RhA.csv</a>)</h4>
<table>
<thead>
<tr>
<th>Read code</th>
<th>Read Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left">14G1.00</td>
<td align="left">H/O: rheumatoid arthritis</td>
</tr>
<tr>
<td align="left">2G25.00</td>
<td align="left">O/E - hands - ulnar deviation</td>
</tr>
<tr>
<td align="left">2G25.11</td>
<td align="left">O/E - ulnar deviation</td>
</tr>
<tr>
<td align="left">2G27.00</td>
<td align="left">O/E-hands-rheumatoid spindling</td>
</tr>
<tr>
<td align="left">66H..13</td>
<td align="left">Rheumatoid arthrit. monitoring</td>
</tr>
<tr>
<td align="left">7P20300</td>
<td align="left">Delivery of rehabilitation for rheumatoid arthritis</td>
</tr>
<tr>
<td align="left">9mM0.00</td>
<td align="left">Rheumatoid arthritis monitoring invitation first letter</td>
</tr>
<tr>
<td align="left">9mM1.00</td>
<td align="left">Rheumatoid arthritis monitoring invitation second letter</td>
</tr>
<tr>
<td align="left">9mM2.00</td>
<td align="left">Rheumatoid arthritis monitoring invitation third letter</td>
</tr>
<tr>
<td align="left">9mM3.00</td>
<td align="left">Rheumatoid arthritis monitoring verbal invitation</td>
</tr>
<tr>
<td align="left">9mM4.00</td>
<td align="left">Rheumatoid arthritis monitoring telephone invitation</td>
</tr>
<tr>
<td align="left">9mM..00</td>
<td align="left">Rheumatoid arthritis monitoring invitation</td>
</tr>
<tr>
<td align="left">F371200</td>
<td align="left">Polyneuropathy in rheumatoid arthritis</td>
</tr>
<tr>
<td align="left">F396400</td>
<td align="left">Myopathy due to rheumatoid arthritis</td>
</tr>
<tr>
<td align="left">G5y8.00</td>
<td align="left">Rheumatoid myocarditis</td>
</tr>
<tr>
<td align="left">G5yA.00</td>
<td align="left">Rheumatoid carditis</td>
</tr>
<tr>
<td align="left">H570.00</td>
<td align="left">Rheumatoid lung</td>
</tr>
<tr>
<td align="left">N362200</td>
<td align="left">Swan-neck finger deformity</td>
</tr>
<tr>
<td align="left">N040000</td>
<td align="left">Rheumatoid arthritis of cervical spine</td>
</tr>
<tr>
<td align="left">N040100</td>
<td align="left">Other rheumatoid arthritis of spine</td>
</tr>
<tr>
<td align="left">N040200</td>
<td align="left">Rheumatoid arthritis of shoulder</td>
</tr>
<tr>
<td align="left">N040300</td>
<td align="left">Rheumatoid arthritis of sternoclavicular joint</td>
</tr>
<tr>
<td align="left">N040400</td>
<td align="left">Rheumatoid arthritis of acromioclavicular joint</td>
</tr>
<tr>
<td align="left">N040500</td>
<td align="left">Rheumatoid arthritis of elbow</td>
</tr>
<tr>
<td align="left">N040600</td>
<td align="left">Rheumatoid arthritis of distal radio-ulnar joint</td>
</tr>
<tr>
<td align="left">N040700</td>
<td align="left">Rheumatoid arthritis of wrist</td>
</tr>
<tr>
<td align="left">N040800</td>
<td align="left">Rheumatoid arthritis of MCP joint</td>
</tr>
<tr>
<td align="left">N040900</td>
<td align="left">Rheumatoid arthritis of PIP joint of finger</td>
</tr>
<tr>
<td align="left">N040A00</td>
<td align="left">Rheumatoid arthritis of DIP joint of finger</td>
</tr>
<tr>
<td align="left">N040B00</td>
<td align="left">Rheumatoid arthritis of hip</td>
</tr>
<tr>
<td align="left">N040C00</td>
<td align="left">Rheumatoid arthritis of sacro-iliac joint</td>
</tr>
<tr>
<td align="left">N040D00</td>
<td align="left">Rheumatoid arthritis of knee</td>
</tr>
<tr>
<td align="left">N040E00</td>
<td align="left">Rheumatoid arthritis of tibio-fibular joint</td>
</tr>
<tr>
<td align="left">N040F00</td>
<td align="left">Rheumatoid arthritis of ankle</td>
</tr>
<tr>
<td align="left">N040G00</td>
<td align="left">Rheumatoid arthritis of subtalar joint</td>
</tr>
<tr>
<td align="left">N040H00</td>
<td align="left">Rheumatoid arthritis of talonavicular joint</td>
</tr>
<tr>
<td align="left">N040J00</td>
<td align="left">Rheumatoid arthritis of other tarsal joint</td>
</tr>
<tr>
<td align="left">N040K00</td>
<td align="left">Rheumatoid arthritis of 1st MTP joint</td>
</tr>
<tr>
<td align="left">N040L00</td>
<td align="left">Rheumatoid arthritis of lesser MTP joint</td>
</tr>
<tr>
<td align="left">N040M00</td>
<td align="left">Rheumatoid arthritis of IP joint of toe</td>
</tr>
<tr>
<td align="left">N040.00</td>
<td align="left">Rheumatoid arthritis</td>
</tr>
<tr>
<td align="left">N040N00</td>
<td align="left">Rheumatoid vasculitis</td>
</tr>
<tr>
<td align="left">N040P00</td>
<td align="left">Seronegative rheumatoid arthritis</td>
</tr>
<tr>
<td align="left">N040Q00</td>
<td align="left">Rheumatoid bursitis</td>
</tr>
<tr>
<td align="left">N040R00</td>
<td align="left">Rheumatoid nodule</td>
</tr>
<tr>
<td align="left">N040S00</td>
<td align="left">Rheumatoid arthritis - multiple joint</td>
</tr>
<tr>
<td align="left">N040T00</td>
<td align="left">Flare of rheumatoid arthritis</td>
</tr>
<tr>
<td align="left">N041.00</td>
<td align="left">Felty's syndrome</td>
</tr>
<tr>
<td align="left">N042100</td>
<td align="left">Rheumatoid lung disease</td>
</tr>
<tr>
<td align="left">N042200</td>
<td align="left">Rheumatoid nodule</td>
</tr>
<tr>
<td align="left">N042.00</td>
<td align="left">Other rheumatoid arthropathy + visceral/systemic involvement</td>
</tr>
<tr>
<td align="left">N042z00</td>
<td align="left">Rheumatoid arthropathy + visceral/systemic involvement NOS</td>
</tr>
<tr>
<td align="left">N047.00</td>
<td align="left">Seropositive errosive rheumatoid arthritis</td>
</tr>
<tr>
<td align="left">N04..00</td>
<td align="left">Rheumatoid arthritis and other inflammatory polyarthropathy</td>
</tr>
<tr>
<td align="left">N04X.00</td>
<td align="left">Seropositive rheumatoid arthritis</td>
</tr>
<tr>
<td align="left">N04y000</td>
<td align="left">Rheumatoid lung</td>
</tr>
<tr>
<td align="left">N04y011</td>
<td align="left">Caplan's syndrome</td>
</tr>
<tr>
<td align="left">N04y012</td>
<td align="left">Fibrosing alveolitis associated with rheumatoid arthritis</td>
</tr>
<tr>
<td align="left">N04y200</td>
<td align="left">Adult-onset Still's disease</td>
</tr>
<tr>
<td align="left">N005.00</td>
<td align="left">Adult Still's Disease</td>
</tr>
<tr>
<td align="left">Nyu1000</td>
<td align="left">[X]Rheumatoid arthritis+involvement/other organs or systems</td>
</tr>
<tr>
<td align="left">Nyu1100</td>
<td align="left">[X]Other seropositive rheumatoid arthritis</td>
</tr>
<tr>
<td align="left">Nyu1200</td>
<td align="left">[X]Other specified rheumatoid arthritis</td>
</tr>
<tr>
<td align="left">Nyu1G00</td>
<td align="left">[X]Seropositive rheumatoid arthritis unspecified</td>
</tr>
</tbody>
</table>
<h4>Secondary care diagnoses (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//secondary_care/ICD_RhA.csv'>ICD_RhA.csv</a>)</h4>
<table>
<thead>
<tr>
<th>ICD-10 code</th>
<th>ICD-10 Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left">J99.0</td>
<td align="left">Rheumatoid lung disease</td>
</tr>
<tr>
<td align="left">M05</td>
<td align="left">Seropositive rheumatoid arthritis</td>
</tr>
<tr>
<td align="left">M06</td>
<td align="left">Other rheumatoid arthritis</td>
</tr>
</tbody>
</table>
<h2>Right bundle branch block</h2>
<h4>Implementation</h4>
~~~
At the specified date, a patient is defined as having had 'Right bundle branch block' IF they meet the criteria for any of the following on or before the specified date. The earliest date on which the individual meets any of the following criteria on or before the specified date is defined as the first event date:
Primary care
1. 'Right bundle branch block' diagnosis or history of diagnosis during a consultation
OR
Secondary care (ICD10)
1. ALL diagnoses of 'Right bundle branch block' or history of diagnosis during a hospitalization
~~~
<h4>Primary care (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//primary_care/CPRD_RBBB.csv'>CPRD_RBBB.csv</a>)</h4>
<table>
<thead>
<tr>
<th>Read code</th>
<th>Read Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="right">3299</td>
<td align="left">ECG: right bundle branch block</td>
</tr>
<tr>
<td align="left">G564.00</td>
<td align="left">Right bundle branch block</td>
</tr>
<tr>
<td align="left">G566200</td>
<td align="left">Right fascicular block</td>
</tr>
<tr>
<td align="left">G56y400</td>
<td align="left">Right fascicular block</td>
</tr>
<tr>
<td align="left">Gyu5W00</td>
<td align="left">[X]Other and unspecified right bundle-branch block</td>
</tr>
</tbody>
</table>
<h4>Secondary care diagnoses (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//secondary_care/ICD_RBBB.csv'>ICD_RBBB.csv</a>)</h4>
<table>
<thead>
<tr>
<th>ICD-10 code</th>
<th>ICD-10 Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left">I45.1</td>
<td align="left">Other and unspecified right bundle-branch block</td>
</tr>
</tbody>
</table>
<h2>Rosacea</h2>
<h4>Implementation</h4>
~~~
At the specified date, a patient is defined as having had 'Rosacea' IF they meet the criteria for any of the following on or before the specified date. The earliest date on which the individual meets any of the following criteria on or before the specified date is defined as the first event date:
Primary care
1. 'Rosacea' diagnosis or history of diagnosis during a consultation
OR
Secondary care (ICD10)
1. ALL diagnoses of 'Rosacea' or history of diagnosis during a hospitalization
~~~
<h4>Primary care (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//primary_care/CPRD_rosacea.csv'>CPRD_rosacea.csv</a>)</h4>
<table>
<thead>
<tr>
<th>Read code</th>
<th>Read Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left">F4C3100</td>
<td align="left">Rosacea conjunctivitis</td>
</tr>
<tr>
<td align="left">M153000</td>
<td align="left">Acne rosacea</td>
</tr>
<tr>
<td align="left">M153100</td>
<td align="left">Rhinophyma</td>
</tr>
<tr>
<td align="left">M153200</td>
<td align="left">Rosacea hypertrophica</td>
</tr>
<tr>
<td align="left">M153300</td>
<td align="left">Lupoid rosacea</td>
</tr>
<tr>
<td align="left">M153400</td>
<td align="left">Ocular rosacea</td>
</tr>
<tr>
<td align="left">M153.00</td>
<td align="left">Rosacea</td>
</tr>
<tr>
<td align="left">M153z00</td>
<td align="left">Rosacea NOS</td>
</tr>
<tr>
<td align="left">Myu6900</td>
<td align="left">[X]Other rosacea</td>
</tr>
</tbody>
</table>
<h4>Secondary care diagnoses (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//secondary_care/ICD_rosacea.csv'>ICD_rosacea.csv</a>)</h4>
<table>
<thead>
<tr>
<th>ICD-10 code</th>
<th>ICD-10 Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left">L71.1</td>
<td align="left">Rhinophyma</td>
</tr>
<tr>
<td align="left">L71.8</td>
<td align="left">Other rosacea</td>
</tr>
<tr>
<td align="left">L71.9</td>
<td align="left">Rosacea, unspecified</td>
</tr>
</tbody>
</table>
<h2>Sarcoidosis</h2>
<h4>Implementation</h4>
~~~
At the specified date, a patient is defined as having had 'Sarcoidosis' IF they meet the criteria for any of the following on or before the specified date. The earliest date on which the individual meets any of the following criteria on or before the specified date is defined as the first event date:
Primary care
1. 'Sarcoidosis' diagnosis or history of diagnosis during a consultation
OR
Secondary care (ICD10)
1. ALL diagnoses of 'Sarcoidosis' or history of diagnosis during a hospitalization
~~~
<h4>Primary care (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//primary_care/CPRD_sarcoid.csv'>CPRD_sarcoid.csv</a>)</h4>
<table>
<thead>
<tr>
<th>Read code</th>
<th>Read Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left">AD50.00</td>
<td align="left">Sarcoidosis of lung</td>
</tr>
<tr>
<td align="left">AD51.00</td>
<td align="left">Sarcoidosis of lymph nodes</td>
</tr>
<tr>
<td align="left">AD52.00</td>
<td align="left">Sarcoidosis of lung with sarcoidosis of lymph nodes</td>
</tr>
<tr>
<td align="left">AD53000</td>
<td align="left">Lupus pernio</td>
</tr>
<tr>
<td align="left">AD53.00</td>
<td align="left">Sarcoidosis of skin</td>
</tr>
<tr>
<td align="left">AD54.00</td>
<td align="left">Sarcoidosis of inferior turbinates</td>
</tr>
<tr>
<td align="left">AD55.00</td>
<td align="left">Sarcoid arthropathy</td>
</tr>
<tr>
<td align="left">AD5..00</td>
<td align="left">Sarcoidosis</td>
</tr>
<tr>
<td align="left">Cyu0600</td>
<td align="left">[X]Sarcoidosis of other and combined sites</td>
</tr>
<tr>
<td align="left">F013.00</td>
<td align="left">Meningitis due to sarcoidosis</td>
</tr>
<tr>
<td align="left">F326300</td>
<td align="left">Multiple cranial nerve palsies in sarcoidosis</td>
</tr>
<tr>
<td align="left">F374900</td>
<td align="left">Polyneuropathy in sarcoidosis</td>
</tr>
<tr>
<td align="left">F396500</td>
<td align="left">Myopathy due to sarcoidosis</td>
</tr>
<tr>
<td align="left">G558300</td>
<td align="left">Sarcoid heart disease</td>
</tr>
<tr>
<td align="left">G5y7.00</td>
<td align="left">Sarcoid myocarditis</td>
</tr>
<tr>
<td align="left">H57y200</td>
<td align="left">Pulmonary sarcoidosis</td>
</tr>
<tr>
<td align="left">J63A.00</td>
<td align="left">Hepatic granulomas in sarcoidosis</td>
</tr>
<tr>
<td align="left">N233200</td>
<td align="left">Myositis in sarcoidosis</td>
</tr>
</tbody>
</table>
<h4>Secondary care diagnoses (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//secondary_care/ICD_sarcoid.csv'>ICD_sarcoid.csv</a>)</h4>
<table>
<thead>
<tr>
<th>ICD-10 code</th>
<th>ICD-10 Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left">D86</td>
<td align="left">Sarcoidosis</td>
</tr>
<tr>
<td align="left">G53.2</td>
<td align="left">Multiple cranial nerve palsies in sarcoidosis</td>
</tr>
<tr>
<td align="left">M63.3</td>
<td align="left">Myositis in sarcoidosis</td>
</tr>
</tbody>
</table>
<h2>Schizophrenia, schizotypal and delusional disorders</h2>
<h4>Implementation</h4>
~~~
At the specified date, a patient is defined as having had 'Schizophrenia, schizotypal and delusional disorders', schizotypal and delusional disorders IF they meet the criteria for any of the following on or before the specified date. The earliest date on which the individual meets any of the following criteria on or before the specified date is defined as the first event date:
Primary care
1. 'Schizophrenia, schizotypal and delusional disorders', schizotypal and delusional disorders diagnosis or history of diagnosis during a consultation
OR
Secondary care
1. ALL diagnoses of 'Schizophrenia, schizotypal and delusional disorders', schizotypal and delusional disorders or history of diagnosis during a hospitalization
~~~
<h4>Primary care (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//primary_care/CPRD_schizo.csv'>CPRD_schizo.csv</a>)</h4>
<table>
<thead>
<tr>
<th>Read code</th>
<th>Read Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="right">1464</td>
<td align="left">H/O: schizophrenia</td>
</tr>
<tr>
<td align="left">146H.00</td>
<td align="left">H/O: psychosis</td>
</tr>
<tr>
<td align="left">212W.00</td>
<td align="left">Schizophrenia resolved</td>
</tr>
<tr>
<td align="left">212X.00</td>
<td align="left">Psychosis resolved</td>
</tr>
<tr>
<td align="left">285..11</td>
<td align="left">Psychotic condition, insight present</td>
</tr>
<tr>
<td align="left">286..11</td>
<td align="left">Poor insight into psychotic condition</td>
</tr>
<tr>
<td align="left">E100000</td>
<td align="left">Unspecified schizophrenia</td>
</tr>
<tr>
<td align="left">E100100</td>
<td align="left">Subchronic schizophrenia</td>
</tr>
<tr>
<td align="left">E100200</td>
<td align="left">Chronic schizophrenic</td>
</tr>
<tr>
<td align="left">E100300</td>
<td align="left">Acute exacerbation of subchronic schizophrenia</td>
</tr>
<tr>
<td align="left">E100400</td>
<td align="left">Acute exacerbation of chronic schizophrenia</td>
</tr>
<tr>
<td align="left">E100500</td>
<td align="left">Schizophrenia in remission</td>
</tr>
<tr>
<td align="left">E100.00</td>
<td align="left">Simple schizophrenia</td>
</tr>
<tr>
<td align="left">E100.11</td>
<td align="left">Schizophrenia simplex</td>
</tr>
<tr>
<td align="left">E100z00</td>
<td align="left">Simple schizophrenia NOS</td>
</tr>
<tr>
<td align="left">E101000</td>
<td align="left">Unspecified hebephrenic schizophrenia</td>
</tr>
<tr>
<td align="left">E101400</td>
<td align="left">Acute exacerbation of chronic hebephrenic schizophrenia</td>
</tr>
<tr>
<td align="left">E101500</td>
<td align="left">Hebephrenic schizophrenia in remission</td>
</tr>
<tr>
<td align="left">E101.00</td>
<td align="left">Hebephrenic schizophrenia</td>
</tr>
<tr>
<td align="left">E101z00</td>
<td align="left">Hebephrenic schizophrenia NOS</td>
</tr>
<tr>
<td align="left">E102000</td>
<td align="left">Unspecified catatonic schizophrenia</td>
</tr>
<tr>
<td align="left">E102100</td>
<td align="left">Subchronic catatonic schizophrenia</td>
</tr>
<tr>
<td align="left">E102400</td>
<td align="left">Acute exacerbation of chronic catatonic schizophrenia</td>
</tr>
<tr>
<td align="left">E102500</td>
<td align="left">Catatonic schizophrenia in remission</td>
</tr>
<tr>
<td align="left">E102.00</td>
<td align="left">Catatonic schizophrenia</td>
</tr>
<tr>
<td align="left">E102z00</td>
<td align="left">Catatonic schizophrenia NOS</td>
</tr>
<tr>
<td align="left">E103000</td>
<td align="left">Unspecified paranoid schizophrenia</td>
</tr>
<tr>
<td align="left">E103100</td>
<td align="left">Subchronic paranoid schizophrenia</td>
</tr>
<tr>
<td align="left">E103200</td>
<td align="left">Chronic paranoid schizophrenia</td>
</tr>
<tr>
<td align="left">E103300</td>
<td align="left">Acute exacerbation of subchronic paranoid schizophrenia</td>
</tr>
<tr>
<td align="left">E103400</td>
<td align="left">Acute exacerbation of chronic paranoid schizophrenia</td>
</tr>
<tr>
<td align="left">E103500</td>
<td align="left">Paranoid schizophrenia in remission</td>
</tr>
<tr>
<td align="left">E103.00</td>
<td align="left">Paranoid schizophrenia</td>
</tr>
<tr>
<td align="left">E103z00</td>
<td align="left">Paranoid schizophrenia NOS</td>
</tr>
<tr>
<td align="left">E105000</td>
<td align="left">Unspecified latent schizophrenia</td>
</tr>
<tr>
<td align="left">E105200</td>
<td align="left">Chronic latent schizophrenia</td>
</tr>
<tr>
<td align="left">E105500</td>
<td align="left">Latent schizophrenia in remission</td>
</tr>
<tr>
<td align="left">E105.00</td>
<td align="left">Latent schizophrenia</td>
</tr>
<tr>
<td align="left">E105z00</td>
<td align="left">Latent schizophrenia NOS</td>
</tr>
<tr>
<td align="left">E106.00</td>
<td align="left">Residual schizophrenia</td>
</tr>
<tr>
<td align="left">E107000</td>
<td align="left">Unspecified schizo-affective schizophrenia</td>
</tr>
<tr>
<td align="left">E107100</td>
<td align="left">Subchronic schizo-affective schizophrenia</td>
</tr>
<tr>
<td align="left">E107200</td>
<td align="left">Chronic schizo-affective schizophrenia</td>
</tr>
<tr>
<td align="left">E107300</td>
<td align="left">Acute exacerbation subchronic schizo-affective schizophrenia</td>
</tr>
<tr>
<td align="left">E107400</td>
<td align="left">Acute exacerbation of chronic schizo-affective schizophrenia</td>
</tr>
<tr>
<td align="left">E107500</td>
<td align="left">Schizo-affective schizophrenia in remission</td>
</tr>
<tr>
<td align="left">E107.00</td>
<td align="left">Schizo-affective schizophrenia</td>
</tr>
<tr>
<td align="left">E107.11</td>
<td align="left">Cyclic schizophrenia</td>
</tr>
<tr>
<td align="left">E107z00</td>
<td align="left">Schizo-affective schizophrenia NOS</td>
</tr>
<tr>
<td align="left">E10..00</td>
<td align="left">Schizophrenic disorders</td>
</tr>
<tr>
<td align="left">E10y000</td>
<td align="left">Atypical schizophrenia</td>
</tr>
<tr>
<td align="left">E10y100</td>
<td align="left">Coenesthopathic schizophrenia</td>
</tr>
<tr>
<td align="left">E10y.00</td>
<td align="left">Other schizophrenia</td>
</tr>
<tr>
<td align="left">E10y.11</td>
<td align="left">Cenesthopathic schizophrenia</td>
</tr>
<tr>
<td align="left">E10yz00</td>
<td align="left">Other schizophrenia NOS</td>
</tr>
<tr>
<td align="left">E10z.00</td>
<td align="left">Schizophrenia NOS</td>
</tr>
<tr>
<td align="left">E120.00</td>
<td align="left">Simple paranoid state</td>
</tr>
<tr>
<td align="left">E121.00</td>
<td align="left">Chronic paranoid psychosis</td>
</tr>
<tr>
<td align="left">E121.11</td>
<td align="left">Sander's disease</td>
</tr>
<tr>
<td align="left">E122.00</td>
<td align="left">Paraphrenia</td>
</tr>
<tr>
<td align="left">E12..00</td>
<td align="left">Paranoid states</td>
</tr>
<tr>
<td align="left">E12y000</td>
<td align="left">Paranoia querulans</td>
</tr>
<tr>
<td align="left">E12y.00</td>
<td align="left">Other paranoid states</td>
</tr>
<tr>
<td align="left">E12yz00</td>
<td align="left">Other paranoid states NOS</td>
</tr>
<tr>
<td align="left">E12z.00</td>
<td align="left">Paranoid psychosis NOS</td>
</tr>
<tr>
<td align="left">E1...00</td>
<td align="left">Non-organic psychoses</td>
</tr>
<tr>
<td align="left">E1y..00</td>
<td align="left">Other specified non-organic psychoses</td>
</tr>
<tr>
<td align="left">E1z..00</td>
<td align="left">Non-organic psychosis NOS</td>
</tr>
<tr>
<td align="left">Eu20000</td>
<td align="left">[X]Paranoid schizophrenia</td>
</tr>
<tr>
<td align="left">Eu20011</td>
<td align="left">[X]Paraphrenic schizophrenia</td>
</tr>
<tr>
<td align="left">Eu20100</td>
<td align="left">[X]Hebephrenic schizophrenia</td>
</tr>
<tr>
<td align="left">Eu20111</td>
<td align="left">[X]Disorganised schizophrenia</td>
</tr>
<tr>
<td align="left">Eu20200</td>
<td align="left">[X]Catatonic schizophrenia</td>
</tr>
<tr>
<td align="left">Eu20211</td>
<td align="left">[X]Catatonic stupor</td>
</tr>
<tr>
<td align="left">Eu20212</td>
<td align="left">[X]Schizophrenic catalepsy</td>
</tr>
<tr>
<td align="left">Eu20213</td>
<td align="left">[X]Schizophrenic catatonia</td>
</tr>
<tr>
<td align="left">Eu20214</td>
<td align="left">[X]Schizophrenic flexibilatis cerea</td>
</tr>
<tr>
<td align="left">Eu20300</td>
<td align="left">[X]Undifferentiated schizophrenia</td>
</tr>
<tr>
<td align="left">Eu20311</td>
<td align="left">[X]Atypical schizophrenia</td>
</tr>
<tr>
<td align="left">Eu20400</td>
<td align="left">[X]Post-schizophrenic depression</td>
</tr>
<tr>
<td align="left">Eu20500</td>
<td align="left">[X]Residual schizophrenia</td>
</tr>
<tr>
<td align="left">Eu20511</td>
<td align="left">[X]Chronic undifferentiated schizophrenia</td>
</tr>
<tr>
<td align="left">Eu20600</td>
<td align="left">[X]Simple schizophrenia</td>
</tr>
<tr>
<td align="left">Eu20.00</td>
<td align="left">[X]Schizophrenia</td>
</tr>
<tr>
<td align="left">Eu20y00</td>
<td align="left">[X]Other schizophrenia</td>
</tr>
<tr>
<td align="left">Eu20y12</td>
<td align="left">[X]Schizophreniform disord NOS</td>
</tr>
<tr>
<td align="left">Eu20y13</td>
<td align="left">[X]Schizophrenifrm psychos NOS</td>
</tr>
<tr>
<td align="left">Eu20z00</td>
<td align="left">[X]Schizophrenia, unspecified</td>
</tr>
<tr>
<td align="left">Eu21.00</td>
<td align="left">[X]Schizotypal disorder</td>
</tr>
<tr>
<td align="left">Eu21.11</td>
<td align="left">[X]Latent schizophrenic reaction</td>
</tr>
<tr>
<td align="left">Eu21.12</td>
<td align="left">[X]Borderline schizophrenia</td>
</tr>
<tr>
<td align="left">Eu21.13</td>
<td align="left">[X]Latent schizophrenia</td>
</tr>
<tr>
<td align="left">Eu21.14</td>
<td align="left">[X]Prepsychotic schizophrenia</td>
</tr>
<tr>
<td align="left">Eu21.15</td>
<td align="left">[X]Prodromal schizophrenia</td>
</tr>
<tr>
<td align="left">Eu21.16</td>
<td align="left">[X]Pseudoneurotic schizophrenia</td>
</tr>
<tr>
<td align="left">Eu21.17</td>
<td align="left">[X]Pseudopsychopathic schizophrenia</td>
</tr>
<tr>
<td align="left">Eu22000</td>
<td align="left">[X]Delusional disorder</td>
</tr>
<tr>
<td align="left">Eu22011</td>
<td align="left">[X]Paranoid psychosis</td>
</tr>
<tr>
<td align="left">Eu22012</td>
<td align="left">[X]Paranoid state</td>
</tr>
<tr>
<td align="left">Eu22013</td>
<td align="left">[X]Paraphrenia - late</td>
</tr>
<tr>
<td align="left">Eu22014</td>
<td align="left">[X]Sensitiver Beziehungswahn</td>
</tr>
<tr>
<td align="left">Eu22015</td>
<td align="left">[X]Paranoia</td>
</tr>
<tr>
<td align="left">Eu22100</td>
<td align="left">[X]Delusional misidentification syndrome</td>
</tr>
<tr>
<td align="left">Eu22111</td>
<td align="left">[X]Capgras syndrome</td>
</tr>
<tr>
<td align="left">Eu22200</td>
<td align="left">[X]Cotard syndrome</td>
</tr>
<tr>
<td align="left">Eu22300</td>
<td align="left">[X]Paranoid state in remission</td>
</tr>
<tr>
<td align="left">Eu22.00</td>
<td align="left">[X]Persistent delusional disorders</td>
</tr>
<tr>
<td align="left">Eu22y00</td>
<td align="left">[X]Other persistent delusional disorders</td>
</tr>
<tr>
<td align="left">Eu22y11</td>
<td align="left">[X]Delusional dysmorphophobia</td>
</tr>
<tr>
<td align="left">Eu22y12</td>
<td align="left">[X]Involutional paranoid state</td>
</tr>
<tr>
<td align="left">Eu22y13</td>
<td align="left">[X]Paranoia querulans</td>
</tr>
<tr>
<td align="left">Eu22z00</td>
<td align="left">[X]Persistent delusional disorder, unspecified</td>
</tr>
<tr>
<td align="left">Eu25000</td>
<td align="left">[X]Schizoaffective disorder, manic type</td>
</tr>
<tr>
<td align="left">Eu25011</td>
<td align="left">[X]Schizoaffective psychosis, manic type</td>
</tr>
<tr>
<td align="left">Eu25012</td>
<td align="left">[X]Schizophreniform psychosis, manic type</td>
</tr>
<tr>
<td align="left">Eu25100</td>
<td align="left">[X]Schizoaffective disorder, depressive type</td>
</tr>
<tr>
<td align="left">Eu25111</td>
<td align="left">[X]Schizoaffective psychosis, depressive type</td>
</tr>
<tr>
<td align="left">Eu25112</td>
<td align="left">[X]Schizophreniform psychosis, depressive type</td>
</tr>
<tr>
<td align="left">Eu25200</td>
<td align="left">[X]Schizoaffective disorder, mixed type</td>
</tr>
<tr>
<td align="left">Eu25211</td>
<td align="left">[X]Cyclic schizophrenia</td>
</tr>
<tr>
<td align="left">Eu25212</td>
<td align="left">[X]Mixed schizophrenic and affective psychosis</td>
</tr>
<tr>
<td align="left">Eu25.00</td>
<td align="left">[X]Schizoaffective disorders</td>
</tr>
<tr>
<td align="left">Eu25y00</td>
<td align="left">[X]Other schizoaffective disorders</td>
</tr>
<tr>
<td align="left">Eu25z00</td>
<td align="left">[X]Schizoaffective disorder, unspecified</td>
</tr>
<tr>
<td align="left">Eu25z11</td>
<td align="left">[X]Schizoaffective psychosis NOS</td>
</tr>
<tr>
<td align="left">Eu26.00</td>
<td align="left">[X]Nonorganic psychosis in remission</td>
</tr>
<tr>
<td align="left">Eu2..00</td>
<td align="left">[X]Schizophrenia, schizotypal and delusional disorders</td>
</tr>
<tr>
<td align="left">Eu2y.00</td>
<td align="left">[X]Other nonorganic psychotic disorders</td>
</tr>
<tr>
<td align="left">Eu2y.11</td>
<td align="left">[X]Chronic hallucinatory psychosis</td>
</tr>
<tr>
<td align="left">Eu2z.00</td>
<td align="left">[X]Unspecified nonorganic psychosis</td>
</tr>
<tr>
<td align="left">Eu2z.11</td>
<td align="left">[X]Psychosis NOS</td>
</tr>
<tr>
<td align="left">ZV11000</td>
<td align="left">[V]Personal history of schizophrenia</td>
</tr>
</tbody>
</table>
<h4>Secondary care diagnoses (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//secondary_care/ICD_schizo.csv'>ICD_schizo.csv</a>)</h4>
<table>
<thead>
<tr>
<th>ICD-10 code</th>
<th>ICD-10 Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left">F20</td>
<td align="left">Schizophrenia</td>
</tr>
<tr>
<td align="left">F21</td>
<td align="left">Schizotypal disorder</td>
</tr>
<tr>
<td align="left">F22</td>
<td align="left">Persistent delusional disorders</td>
</tr>
<tr>
<td align="left">F25</td>
<td align="left">Schizoaffective disorders</td>
</tr>
<tr>
<td align="left">F28</td>
<td align="left">Other nonorganic psychotic disorders</td>
</tr>
<tr>
<td align="left">F29</td>
<td align="left">Unspecified nonorganic psychosis</td>
</tr>
</tbody>
</table>
<h2>Scleritis and episcleritis</h2>
<h4>Implementation</h4>
~~~
At the specified date, a patient is defined as having had 'Scleritis and episcleritis' and epi'Scleritis and episcleritis' IF they meet the criteria for any of the following on or before the specified date. The earliest date on which the individual meets any of the following criteria on or before the specified date is defined as the first event date:
Primary care
1. 'Scleritis and episcleritis' and epi'Scleritis and episcleritis' diagnosis or history of diagnosis during a consultation
OR
Secondary care
1. ALL diagnoses of 'Scleritis and episcleritis' and epi'Scleritis and episcleritis' or history of diagnosis during a hospitalization
~~~
<h4>Primary care (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//primary_care/CPRD_scleritis.csv'>CPRD_scleritis.csv</a>)</h4>
<table>
<thead>
<tr>
<th>Read code</th>
<th>Read Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left">F4K0000</td>
<td align="left">Unspecified scleritis</td>
</tr>
<tr>
<td align="left">F4K0100</td>
<td align="left">Episcleritis periodica fugax</td>
</tr>
<tr>
<td align="left">F4K0200</td>
<td align="left">Nodular episcleritis</td>
</tr>
<tr>
<td align="left">F4K0300</td>
<td align="left">Anterior scleritis</td>
</tr>
<tr>
<td align="left">F4K0400</td>
<td align="left">Scleromalacia perforans</td>
</tr>
<tr>
<td align="left">F4K0500</td>
<td align="left">Sclerokeratitis</td>
</tr>
<tr>
<td align="left">F4K0600</td>
<td align="left">Brawny scleritis</td>
</tr>
<tr>
<td align="left">F4K0700</td>
<td align="left">Posterior scleritis</td>
</tr>
<tr>
<td align="left">F4K0711</td>
<td align="left">Sclerotenonitis</td>
</tr>
<tr>
<td align="left">F4K0.00</td>
<td align="left">Scleritis and episcleritis</td>
</tr>
<tr>
<td align="left">F4K0.11</td>
<td align="left">Episcleritis</td>
</tr>
<tr>
<td align="left">F4K0.12</td>
<td align="left">Scleritis</td>
</tr>
<tr>
<td align="left">F4K0z00</td>
<td align="left">Scleritis or episcleritis NOS</td>
</tr>
<tr>
<td align="left">FyuD800</td>
<td align="left">[X]Scleritis+episcleritis in diseases CE</td>
</tr>
</tbody>
</table>
<h4>Secondary care diagnoses (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//secondary_care/ICD_scleritis.csv'>ICD_scleritis.csv</a>)</h4>
<table>
<thead>
<tr>
<th>ICD-10 code</th>
<th>ICD-10 Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left">H15.0</td>
<td align="left">Scleritis</td>
</tr>
<tr>
<td align="left">H15.1</td>
<td align="left">Episcleritis</td>
</tr>
<tr>
<td align="left">H19.0</td>
<td align="left">Scleritis and episcleritis in diseases classified elsewhere</td>
</tr>
</tbody>
</table>
<h2>Scoliosis</h2>
<h4>Implementation</h4>
~~~
At the specified date, a patient is defined as having had 'Scoliosis' IF they meet the criteria for any of the following on or before the specified date. The earliest date on which the individual meets any of the following criteria on or before the specified date is defined as the first event date:
Primary care
1. 'Scoliosis' diagnosis or history of diagnosis or procedure during a consultation
OR
Secondary care (ICD10)
1. ALL diagnoses of 'Scoliosis' or history of diagnosis during a hospitalization
~~~
<h4>Primary care (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//primary_care/CPRD_scoliosis.csv'>CPRD_scoliosis.csv</a>)</h4>
<table>
<thead>
<tr>
<th>Read code</th>
<th>Read Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="right">2376</td>
<td align="left">O/E - kyphoscoliotic chest def</td>
</tr>
<tr>
<td align="left">7J44111</td>
<td align="left">Dwyer anterior wiring of spine for scoliosis</td>
</tr>
<tr>
<td align="left">G411.00</td>
<td align="left">Kyphoscoliotic heart disease</td>
</tr>
<tr>
<td align="left">N373000</td>
<td align="left">Idiopathic scoliosis</td>
</tr>
<tr>
<td align="left">N373100</td>
<td align="left">Idiopathic kyphoscoliosis</td>
</tr>
<tr>
<td align="left">N373200</td>
<td align="left">Resolving infantile idiopathic scoliosis</td>
</tr>
<tr>
<td align="left">N373300</td>
<td align="left">Progressive infantile idiopathic scoliosis</td>
</tr>
<tr>
<td align="left">N373500</td>
<td align="left">Thoracogenic scoliosis</td>
</tr>
<tr>
<td align="left">N373600</td>
<td align="left">Postural scoliosis</td>
</tr>
<tr>
<td align="left">N373700</td>
<td align="left">Adolescent idiopathic scoliosis</td>
</tr>
<tr>
<td align="left">N373.00</td>
<td align="left">Kyphoscoliosis and scoliosis</td>
</tr>
<tr>
<td align="left">N373z00</td>
<td align="left">Kyphoscoliosis or scoliosis NOS</td>
</tr>
<tr>
<td align="left">N374300</td>
<td align="left">Scoliosis associated with other condition</td>
</tr>
<tr>
<td align="left">N374A00</td>
<td align="left">Scoliosis in skeletal dysplasia</td>
</tr>
<tr>
<td align="left">N374B00</td>
<td align="left">Neuromuscular scoliosis</td>
</tr>
<tr>
<td align="left">N374C00</td>
<td align="left">Scoliosis in neurofibromatosis</td>
</tr>
<tr>
<td align="left">N374D00</td>
<td align="left">Scoliosis in connective tissue anomalies</td>
</tr>
<tr>
<td align="left">Nyu5300</td>
<td align="left">[X]Other idiopathic scoliosis</td>
</tr>
<tr>
<td align="left">Nyu5400</td>
<td align="left">[X]Other secondary scoliosis</td>
</tr>
<tr>
<td align="left">Nyu5500</td>
<td align="left">[X]Other forms of scoliosis</td>
</tr>
<tr>
<td align="left">PE22.00</td>
<td align="left">Congenital postural scoliosis</td>
</tr>
<tr>
<td align="left">PE23.00</td>
<td align="left">Congenital scoliosis due to congenital bony malformation</td>
</tr>
<tr>
<td align="left">PG18.11</td>
<td align="left">Congenital kyphoscoliosis</td>
</tr>
</tbody>
</table>
<h4>Secondary care diagnoses (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//secondary_care/ICD_scoliosis.csv'>ICD_scoliosis.csv</a>)</h4>
<table>
<thead>
<tr>
<th>ICD-10 code</th>
<th>ICD-10 Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left">M41</td>
<td align="left">Scoliosis</td>
</tr>
</tbody>
</table>
<h2>Seborrheic dermatitis</h2>
<h4>Implementation</h4>
~~~
At the specified date, a patient is defined as having had 'Seborrheic dermatitis' IF they meet the criteria for any of the following on or before the specified date. The earliest date on which the individual meets any of the following criteria on or before the specified date is defined as the first event date:
Primary care
1. 'Seborrheic dermatitis' diagnosis or history of diagnosis during a consultation
OR
Secondary care (ICD10)
1. ALL diagnoses of 'Seborrheic dermatitis' or history of diagnosis during a hospitalization
~~~
<h4>Primary care (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//primary_care/CPRD_seb_derm.csv'>CPRD_seb_derm.csv</a>)</h4>
<table>
<thead>
<tr>
<th>Read code</th>
<th>Read Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left">M100.00</td>
<td align="left">Pityriasis capitis - dandruff</td>
</tr>
<tr>
<td align="left">M101.00</td>
<td align="left">Seborrhoeic dermatitis</td>
</tr>
<tr>
<td align="left">M101.11</td>
<td align="left">Seborrhoeic dermatitis capitis</td>
</tr>
<tr>
<td align="left">M101.12</td>
<td align="left">Seborrhoeic eczema</td>
</tr>
<tr>
<td align="left">M118000</td>
<td align="left">Infantile seborrhoeic dermatitis capitis</td>
</tr>
<tr>
<td align="left">M118011</td>
<td align="left">Cradle cap</td>
</tr>
<tr>
<td align="left">M118.00</td>
<td align="left">Infantile seborrhoeic dermatitis</td>
</tr>
<tr>
<td align="left">M118z00</td>
<td align="left">Infantile seborrhoeic dermatitis NOS</td>
</tr>
<tr>
<td align="left">M15y300</td>
<td align="left">Leiner's disease</td>
</tr>
<tr>
<td align="left">M165100</td>
<td align="left">Pityriasis folliculorum</td>
</tr>
<tr>
<td align="left">M165200</td>
<td align="left">Pityriasis streptogenes</td>
</tr>
<tr>
<td align="left">M244.11</td>
<td align="left">Seborrhoea capitis</td>
</tr>
<tr>
<td align="left">M263000</td>
<td align="left">Seborrhoea corporis</td>
</tr>
<tr>
<td align="left">M263100</td>
<td align="left">Seborrhoea faciei</td>
</tr>
<tr>
<td align="left">M263200</td>
<td align="left">Seborrhoea nasi</td>
</tr>
<tr>
<td align="left">M263300</td>
<td align="left">Seborrhoea oleosa</td>
</tr>
<tr>
<td align="left">M263.00</td>
<td align="left">Seborrhoea</td>
</tr>
<tr>
<td align="left">M263z00</td>
<td align="left">Seborrhoea NOS</td>
</tr>
<tr>
<td align="left">Myu2000</td>
<td align="left">[X]Other seborrhoeic dermatitis</td>
</tr>
</tbody>
</table>
<h4>Secondary care diagnoses (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//secondary_care/ICD_seb_derm.csv'>ICD_seb_derm.csv</a>)</h4>
<table>
<thead>
<tr>
<th>ICD-10 code</th>
<th>ICD-10 Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left">L21</td>
<td align="left">Seborrhoeic dermatitis</td>
</tr>
</tbody>
</table>
<h2>Secondary Malignancy_Adrenal gland</h2>
<h4>Implementation</h4>
~~~
At the specified date, a patient is defined as having had Secondary Malignancy Adrenal gland IF they meet the criteria for any of the following on or before the specified date. The earliest date on which the individual meets any of the following criteria on or before the specified date is defined as the first event date:
Primary care
1. Secondary Malignancy Adrenal gland diagnosis or history of diagnosis during a consultation
OR
Secondary care
1. ALL diagnoses of Secondary Malignancy Adrenal gland or history of diagnosis during a hospitalization
~~~
<h4>Primary care (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//primary_care/CPRD_sec_adrenal.csv'>CPRD_sec_adrenal.csv</a>)</h4>
<table>
<thead>
<tr>
<th>Read code</th>
<th>Read Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left">B587.00</td>
<td align="left">Secondary malignant neoplasm of adrenal gland</td>
</tr>
</tbody>
</table>
<h4>Secondary care diagnoses (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//secondary_care/ICD_sec_adrenal.csv'>ICD_sec_adrenal.csv</a>)</h4>
<table>
<thead>
<tr>
<th>ICD-10 code</th>
<th>ICD-10 Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left">C79.7</td>
<td align="left">Secondary malignant neoplasm of adrenal gland</td>
</tr>
</tbody>
</table>
<h2>Secondary Malignancy_Bone</h2>
<h4>Implementation</h4>
~~~
At the specified date, a patient is defined as having had Secondary Malignancy Bone IF they meet the criteria for any of the following on or before the specified date. The earliest date on which the individual meets any of the following criteria on or before the specified date is defined as the first event date:
Primary care
1. Secondary Malignancy Bone diagnosis or history of diagnosis during a consultation
OR
Secondary care
1. ALL diagnoses of Secondary Malignancy Bone or history of diagnosis during a hospitalization
~~~
<h4>Primary care (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//primary_care/CPRD_sec_bone.csv'>CPRD_sec_bone.csv</a>)</h4>
<table>
<thead>
<tr>
<th>Read code</th>
<th>Read Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left">B585000</td>
<td align="left">Pathological fracture due to metastatic bone disease</td>
</tr>
<tr>
<td align="left">B585.00</td>
<td align="left">Secondary malignant neoplasm of bone and bone marrow</td>
</tr>
</tbody>
</table>
<h4>Secondary care diagnoses (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//secondary_care/ICD_sec_bone.csv'>ICD_sec_bone.csv</a>)</h4>
<table>
<thead>
<tr>
<th>ICD-10 code</th>
<th>ICD-10 Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left">C79.5</td>
<td align="left">Secondary malignant neoplasm of bone and bone marrow</td>
</tr>
</tbody>
</table>
<h2>Secondary Malignancy_Bowel</h2>
<h4>Implementation</h4>
~~~
At the specified date, a patient is defined as having had Secondary Malignancy Bowel IF they meet the criteria for any of the following on or before the specified date. The earliest date on which the individual meets any of the following criteria on or before the specified date is defined as the first event date:
Primary care
1. Secondary Malignancy Bowel diagnosis or history of diagnosis during a consultation
OR
Secondary care
1. ALL diagnoses of Secondary Malignancy Bowel or history of diagnosis during a hospitalization
~~~
<h4>Primary care (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//primary_care/CPRD_sec_bowel.csv'>CPRD_sec_bowel.csv</a>)</h4>
<table>
<thead>
<tr>
<th>Read code</th>
<th>Read Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left">B574000</td>
<td align="left">Secondary malignant neoplasm of duodenum</td>
</tr>
<tr>
<td align="left">B574100</td>
<td align="left">Secondary malignant neoplasm of jejunum</td>
</tr>
<tr>
<td align="left">B574200</td>
<td align="left">Secondary malignant neoplasm of ileum</td>
</tr>
<tr>
<td align="left">B574.00</td>
<td align="left">Secondary malignant neoplasm of small intestine and duodenum</td>
</tr>
<tr>
<td align="left">B574z00</td>
<td align="left">Secondary malig neop of small intestine or duodenum NOS</td>
</tr>
<tr>
<td align="left">B575000</td>
<td align="left">Secondary malignant neoplasm of colon</td>
</tr>
<tr>
<td align="left">B575100</td>
<td align="left">Secondary malignant neoplasm of rectum</td>
</tr>
<tr>
<td align="left">B575.00</td>
<td align="left">Secondary malignant neoplasm of large intestine and rectum</td>
</tr>
<tr>
<td align="left">B575z00</td>
<td align="left">Secondary malig neop of large intestine or rectum NOS</td>
</tr>
</tbody>
</table>
<h4>Secondary care diagnoses (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//secondary_care/ICD_sec_bowel.csv'>ICD_sec_bowel.csv</a>)</h4>
<table>
<thead>
<tr>
<th>ICD-10 code</th>
<th>ICD-10 Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left">C78.4</td>
<td align="left">Secondary malignant neoplasm of small intestine</td>
</tr>
<tr>
<td align="left">C78.5</td>
<td align="left">Secondary malignant neoplasm of large intestine and rectum</td>
</tr>
</tbody>
</table>
<h2>Secondary Malignancy_Brain, Other CNS and Intracranial</h2>
<h4>Implementation</h4>
~~~
At the specified date, a patient is defined as having had Secondary Malignancy Brain, Other CNS and Intracranial IF they meet the criteria for any of the following on or before the specified date. The earliest date on which the individual meets any of the following criteria on or before the specified date is defined as the first event date:
Primary care
1. Secondary Malignancy Brain, Other CNS and Intracranial diagnosis or history of diagnosis during a consultation
OR
Secondary care
1. ALL diagnoses of Secondary Malignancy Brain, Other CNS and Intracranial or history of diagnosis during a hospitalization
~~~
<h4>Primary care (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//primary_care/CPRD_sec_brain.csv'>CPRD_sec_brain.csv</a>)</h4>
<table>
<thead>
<tr>
<th>Read code</th>
<th>Read Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left">B583000</td>
<td align="left">Secondary malignant neoplasm of brain</td>
</tr>
<tr>
<td align="left">B583100</td>
<td align="left">Secondary malignant neoplasm of spinal cord</td>
</tr>
<tr>
<td align="left">B583200</td>
<td align="left">Cerebral metastasis</td>
</tr>
<tr>
<td align="left">B583.00</td>
<td align="left">Secondary malignant neoplasm of brain and spinal cord</td>
</tr>
<tr>
<td align="left">B583z00</td>
<td align="left">Secondary malignant neoplasm of brain or spinal cord NOS</td>
</tr>
</tbody>
</table>
<h4>Secondary care diagnoses (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//secondary_care/ICD_sec_brain.csv'>ICD_sec_brain.csv</a>)</h4>
<table>
<thead>
<tr>
<th>ICD-10 code</th>
<th>ICD-10 Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left">C79.3</td>
<td align="left">Secondary malignant neoplasm of brain and cerebral meninges</td>
</tr>
<tr>
<td align="left">C79.4</td>
<td align="left">Secondary malignant neoplasm of other and unspecified parts of nervous system</td>
</tr>
</tbody>
</table>
<h2>Secondary Malignancy_Lung</h2>
<h4>Implementation</h4>
~~~
At the specified date, a patient is defined as having had Secondary Malignancy Lung IF they meet the criteria for any of the following on or before the specified date. The earliest date on which the individual meets any of the following criteria on or before the specified date is defined as the first event date:
Primary care
1. Secondary Malignancy Lung diagnosis or history of diagnosis during a consultation
OR
Secondary care
1. ALL diagnoses of Secondary Malignancy Lung or history of diagnosis during a hospitalization
~~~
<h4>Primary care (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//primary_care/CPRD_sec_lung.csv'>CPRD_sec_lung.csv</a>)</h4>
<table>
<thead>
<tr>
<th>Read code</th>
<th>Read Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left">B570.00</td>
<td align="left">Secondary malignant neoplasm of lung</td>
</tr>
</tbody>
</table>
<h4>Secondary care diagnoses (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//secondary_care/ICD_sec_lung.csv'>ICD_sec_lung.csv</a>)</h4>
<table>
<thead>
<tr>
<th>ICD-10 code</th>
<th>ICD-10 Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left">C78.0</td>
<td align="left">Secondary malignant neoplasm of lung</td>
</tr>
</tbody>
</table>
<h2>Secondary Malignancy_Lymph Nodes</h2>
<h4>Implementation</h4>
~~~
At the specified date, a patient is defined as having had Secondary Malignancy Lymph Nodes IF they meet the criteria for any of the following on or before the specified date. The earliest date on which the individual meets any of the following criteria on or before the specified date is defined as the first event date:
Primary care
1. Secondary Malignancy Lymph Nodes diagnosis or history of diagnosis during a consultation
OR
Secondary care
1. ALL diagnoses of Secondary Malignancy Lymph Nodes or history of diagnosis during a hospitalization
~~~
<h4>Primary care (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//primary_care/CPRD_sec_LN.csv'>CPRD_sec_LN.csv</a>)</h4>
<table>
<thead>
<tr>
<th>Read code</th>
<th>Read Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left">B560000</td>
<td align="left">Secondary and unspec malig neop of superficial parotid LN</td>
</tr>
<tr>
<td align="left">B560100</td>
<td align="left">Secondary and unspec malignant neoplasm mastoid lymph nodes</td>
</tr>
<tr>
<td align="left">B560200</td>
<td align="left">Secondary and unspec malig neop superficial cervical LN</td>
</tr>
<tr>
<td align="left">B560300</td>
<td align="left">Secondary and unspec malignant neoplasm occipital lymph node</td>
</tr>
<tr>
<td align="left">B560400</td>
<td align="left">Secondary and unspec malig neop deep parotid lymph nodes</td>
</tr>
<tr>
<td align="left">B560500</td>
<td align="left">Secondary and unspec malig neop submandibular lymph nodes</td>
</tr>
<tr>
<td align="left">B560600</td>
<td align="left">Secondary and unspec malig neop of facial lymph nodes</td>
</tr>
<tr>
<td align="left">B560700</td>
<td align="left">Secondary and unspec malig neop submental lymph nodes</td>
</tr>
<tr>
<td align="left">B560800</td>
<td align="left">Secondary and unspec malig neop anterior cervical LN</td>
</tr>
<tr>
<td align="left">B560900</td>
<td align="left">Secondary and unspec malig neop deep cervical LN</td>
</tr>
<tr>
<td align="left">B560.00</td>
<td align="left">Secondary and unspec malig neop lymph nodes head/face/neck</td>
</tr>
<tr>
<td align="left">B560z00</td>
<td align="left">Secondary unspec malig neop lymph nodes head/face/neck NOS</td>
</tr>
<tr>
<td align="left">B561000</td>
<td align="left">Secondary and unspec malig neop internal mammary lymph nodes</td>
</tr>
<tr>
<td align="left">B561100</td>
<td align="left">Secondary and unspec malig neop intercostal lymph nodes</td>
</tr>
<tr>
<td align="left">B561200</td>
<td align="left">Secondary and unspec malig neop diaphragmatic lymph nodes</td>
</tr>
<tr>
<td align="left">B561300</td>
<td align="left">Secondary and unspec malig neop ant mediastinal lymph nodes</td>
</tr>
<tr>
<td align="left">B561400</td>
<td align="left">Secondary and unspec malig neop post mediastinal lymph nodes</td>
</tr>
<tr>
<td align="left">B561500</td>
<td align="left">Secondary and unspec malig neop paratracheal lymph nodes</td>
</tr>
<tr>
<td align="left">B561600</td>
<td align="left">Secondary and unspec malig neop superfic tracheobronchial LN</td>
</tr>
<tr>
<td align="left">B561700</td>
<td align="left">Secondary and unspec malig neop inferior tracheobronchial LN</td>
</tr>
<tr>
<td align="left">B561800</td>
<td align="left">Secondary and unspec malig neop bronchopulmonary lymph nodes</td>
</tr>
<tr>
<td align="left">B561900</td>
<td align="left">Secondary and unspec malig neop pulmonary lymph nodes</td>
</tr>
<tr>
<td align="left">B561.00</td>
<td align="left">Secondary and unspec malig neop intrathoracic lymph nodes</td>
</tr>
<tr>
<td align="left">B561z00</td>
<td align="left">Secondary and unspec malig neop intrathoracic LN NOS</td>
</tr>
<tr>
<td align="left">B562000</td>
<td align="left">Secondary and unspec malig neop coeliac lymph nodes</td>
</tr>
<tr>
<td align="left">B562100</td>
<td align="left">Secondary and unspec malig neop superficial mesenteric LN</td>
</tr>
<tr>
<td align="left">B562200</td>
<td align="left">Secondary and unspec malig neop inferior mesenteric LN</td>
</tr>
<tr>
<td align="left">B562300</td>
<td align="left">Secondary and unspec malig neop common iliac lymph nodes</td>
</tr>
<tr>
<td align="left">B562400</td>
<td align="left">Secondary and unspec malig neop external iliac lymph nodes</td>
</tr>
<tr>
<td align="left">B562.00</td>
<td align="left">Secondary and unspec malig neop intra-abdominal lymph nodes</td>
</tr>
<tr>
<td align="left">B562z00</td>
<td align="left">Secondary and unspec malig neop intra-abdominal LN NOS</td>
</tr>
<tr>
<td align="left">B563000</td>
<td align="left">Secondary and unspec malig neop axillary lymph nodes</td>
</tr>
<tr>
<td align="left">B563100</td>
<td align="left">Secondary and unspec malig neop supratrochlear lymph nodes</td>
</tr>
<tr>
<td align="left">B563200</td>
<td align="left">Secondary and unspec malig neop infraclavicular lymph nodes</td>
</tr>
<tr>
<td align="left">B563300</td>
<td align="left">Secondary and unspec malig neop pectoral lymph nodes</td>
</tr>
<tr>
<td align="left">B563.00</td>
<td align="left">Secondary and unspec malig neop axilla and upper limb LN</td>
</tr>
<tr>
<td align="left">B563z00</td>
<td align="left">Secondary and unspec malig neop axilla and upper limb LN NOS</td>
</tr>
<tr>
<td align="left">B564000</td>
<td align="left">Secondary and unspec malig neop superficial inguinal LN</td>
</tr>
<tr>
<td align="left">B564100</td>
<td align="left">Secondary and unspec malig neop deep inguinal lymph nodes</td>
</tr>
<tr>
<td align="left">B564.00</td>
<td align="left">Secondary and unspec malig neop inguinal and lower limb LN</td>
</tr>
<tr>
<td align="left">B564z00</td>
<td align="left">Secondary and unspec malig neop of inguinal and leg LN NOS</td>
</tr>
<tr>
<td align="left">B565000</td>
<td align="left">Secondary and unspec malig neop internal iliac lymph nodes</td>
</tr>
<tr>
<td align="left">B565200</td>
<td align="left">Secondary and unspec malig neop circumflex iliac LN</td>
</tr>
<tr>
<td align="left">B565300</td>
<td align="left">Secondary and unspec malig neop sacral lymph nodes</td>
</tr>
<tr>
<td align="left">B565.00</td>
<td align="left">Secondary and unspec malig neop intrapelvic lymph nodes</td>
</tr>
<tr>
<td align="left">B565z00</td>
<td align="left">Secondary and unspec malig neop intrapelvic LN NOS</td>
</tr>
<tr>
<td align="left">B56..00</td>
<td align="left">Secondary and unspecified malignant neoplasm of lymph nodes</td>
</tr>
<tr>
<td align="left">B56..11</td>
<td align="left">Lymph node metastases</td>
</tr>
<tr>
<td align="left">B56y.00</td>
<td align="left">Secondary and unspec malig neop lymph nodes multiple sites</td>
</tr>
<tr>
<td align="left">B56z.00</td>
<td align="left">Secondary and unspec malig neop lymph nodes NOS</td>
</tr>
<tr>
<td align="left">ByuC200</td>
<td align="left">[X]2ndry+unspcf malignant neoplasm lymph nodes/multi regions</td>
</tr>
</tbody>
</table>
<h4>Secondary care diagnoses (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//secondary_care/ICD_sec_LN.csv'>ICD_sec_LN.csv</a>)</h4>
<table>
<thead>
<tr>
<th>ICD-10 code</th>
<th>ICD-10 Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left">C77</td>
<td align="left">Secondary and unspecified malignant neoplasm of lymph nodes</td>
</tr>
</tbody>
</table>
<h2>Secondary Malignancy_Other organs</h2>
<h4>Implementation</h4>
~~~
At the specified date, a patient is defined as having had Secondary Malignancy Other organs IF they meet the criteria for any of the following on or before the specified date. The earliest date on which the individual meets any of the following criteria on or before the specified date is defined as the first event date:
Primary care
1. Secondary Malignancy Other organs diagnosis or history of diagnosis during a consultation
OR
2. Secondary Malignancy Other organs possible diagnosis during a consultation IF NO record satisfying criteria for Secondary Malignancy of any other organ
OR
Secondary care
1. ALL diagnoses of Secondary Malignancy Other organs or history of diagnosis during a hospitalization
2. ALL possible diagnosis of Secondary Malignancy Other organs during a hospitalization IF NO record satisfying criteria for Secondary Malignancy of any other organ
~~~
<h4>Primary care (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//primary_care/CPRD_sec_other.csv'>CPRD_sec_other.csv</a>)</h4>
<table>
<thead>
<tr>
<th>Read code</th>
<th>Read Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left">1D18.00</td>
<td align="left">Pain from metastases</td>
</tr>
<tr>
<td align="left">5136.00</td>
<td align="left">X-ray metastasis control</td>
</tr>
<tr>
<td align="left">B571.00</td>
<td align="left">Secondary malignant neoplasm of mediastinum</td>
</tr>
<tr>
<td align="left">B573.00</td>
<td align="left">Secondary malignant neoplasm of other respiratory organs</td>
</tr>
<tr>
<td align="left">B57..00</td>
<td align="left">Secondary malig neop of respiratory and digestive systems</td>
</tr>
<tr>
<td align="left">B57..11</td>
<td align="left">Metastases of respiratory and/or digestive systems</td>
</tr>
<tr>
<td align="left">B57..12</td>
<td align="left">Secondary carcinoma of respiratory and/or digestive systems</td>
</tr>
<tr>
<td align="left">B57y.00</td>
<td align="left">Secondary malignant neoplasm of other digestive organ</td>
</tr>
<tr>
<td align="left">B57z.00</td>
<td align="left">Secondary malig neop of respiratory or digestive system NOS</td>
</tr>
<tr>
<td align="left">B580.00</td>
<td align="left">Secondary malignant neoplasm of kidney</td>
</tr>
<tr>
<td align="left">B581000</td>
<td align="left">Secondary malignant neoplasm of ureter</td>
</tr>
<tr>
<td align="left">B581100</td>
<td align="left">Secondary malignant neoplasm of bladder</td>
</tr>
<tr>
<td align="left">B581200</td>
<td align="left">Secondary malignant neoplasm of urethra</td>
</tr>
<tr>
<td align="left">B581.00</td>
<td align="left">Secondary malignant neoplasm of other urinary organs</td>
</tr>
<tr>
<td align="left">B581z00</td>
<td align="left">Secondary malignant neoplasm of other urinary organ NOS</td>
</tr>
<tr>
<td align="left">B582000</td>
<td align="left">Secondary malignant neoplasm of skin of head</td>
</tr>
<tr>
<td align="left">B582100</td>
<td align="left">Secondary malignant neoplasm of skin of face</td>
</tr>
<tr>
<td align="left">B582200</td>
<td align="left">Secondary malignant neoplasm of skin of neck</td>
</tr>
<tr>
<td align="left">B582300</td>
<td align="left">Secondary malignant neoplasm of skin of trunk</td>
</tr>
<tr>
<td align="left">B582400</td>
<td align="left">Secondary malignant neoplasm of skin of shoulder and arm</td>
</tr>
<tr>
<td align="left">B582500</td>
<td align="left">Secondary malignant neoplasm of skin of hip and leg</td>
</tr>
<tr>
<td align="left">B582600</td>
<td align="left">Secondary malignant neoplasm of skin of breast</td>
</tr>
<tr>
<td align="left">B582.00</td>
<td align="left">Secondary malignant neoplasm of skin</td>
</tr>
<tr>
<td align="left">B582z00</td>
<td align="left">Secondary malignant neoplasm of skin NOS</td>
</tr>
<tr>
<td align="left">B584.00</td>
<td align="left">Secondary malignant neoplasm of other part of nervous system</td>
</tr>
<tr>
<td align="left">B586.00</td>
<td align="left">Secondary malignant neoplasm of ovary</td>
</tr>
<tr>
<td align="left">B58..00</td>
<td align="left">Secondary malignant neoplasm of other specified sites</td>
</tr>
<tr>
<td align="left">B58..11</td>
<td align="left">Secondary carcinoma of other specified sites</td>
</tr>
<tr>
<td align="left">B58y000</td>
<td align="left">Secondary malignant neoplasm of breast</td>
</tr>
<tr>
<td align="left">B58y100</td>
<td align="left">Secondary malignant neoplasm of uterus</td>
</tr>
<tr>
<td align="left">B58y200</td>
<td align="left">Secondary malignant neoplasm of cervix uteri</td>
</tr>
<tr>
<td align="left">B58y211</td>
<td align="left">Secondary cancer of the cervix</td>
</tr>
<tr>
<td align="left">B58y300</td>
<td align="left">Secondary malignant neoplasm of vagina</td>
</tr>
<tr>
<td align="left">B58y400</td>
<td align="left">Secondary malignant neoplasm of vulva</td>
</tr>
<tr>
<td align="left">B58y411</td>
<td align="left">Secondary cancer of the vulva</td>
</tr>
<tr>
<td align="left">B58y500</td>
<td align="left">Secondary malignant neoplasm of prostate</td>
</tr>
<tr>
<td align="left">B58y600</td>
<td align="left">Secondary malignant neoplasm of testis</td>
</tr>
<tr>
<td align="left">B58y700</td>
<td align="left">Secondary malignant neoplasm of penis</td>
</tr>
<tr>
<td align="left">B58y800</td>
<td align="left">Secondary malignant neoplasm of epididymis and vas deferens</td>
</tr>
<tr>
<td align="left">B58y900</td>
<td align="left">Secondary malignant neoplasm of tongue</td>
</tr>
<tr>
<td align="left">B58y.00</td>
<td align="left">Secondary malignant neoplasm of other specified sites</td>
</tr>
<tr>
<td align="left">B58yz00</td>
<td align="left">Secondary malignant neoplasm of other specified site NOS</td>
</tr>
<tr>
<td align="left">B58z.00</td>
<td align="left">Secondary malignant neoplasm of other specified site NOS</td>
</tr>
<tr>
<td align="left">B590.00</td>
<td align="left">Disseminated malignancy NOS</td>
</tr>
<tr>
<td align="left">B590.11</td>
<td align="left">Carcinomatosis</td>
</tr>
<tr>
<td align="left">B594.00</td>
<td align="left">Secondary malignant neoplasm of unknown site</td>
</tr>
<tr>
<td align="left">BB03.00</td>
<td align="left">[M]Neoplasm, metastatic</td>
</tr>
<tr>
<td align="left">BB03.11</td>
<td align="left">[M]Secondary neoplasm</td>
</tr>
<tr>
<td align="left">BB13.00</td>
<td align="left">[M]Carcinoma, metastatic, NOS</td>
</tr>
<tr>
<td align="left">BB13.11</td>
<td align="left">[M]Secondary carcinoma</td>
</tr>
<tr>
<td align="left">BB2B.00</td>
<td align="left">[M]Squamous cell carcinoma, metastatic NOS</td>
</tr>
<tr>
<td align="left">BB53.00</td>
<td align="left">[M]Adenocarcinoma, metastatic, NOS</td>
</tr>
<tr>
<td align="left">BB85100</td>
<td align="left">[M]Metastatic signet ring cell carcinoma</td>
</tr>
<tr>
<td align="left">BBy2.00</td>
<td align="left">[M]No microscopic confirmation tumour, clinically metastatic</td>
</tr>
<tr>
<td align="left">ByuC300</td>
<td align="left">[X]Secondary malignant neoplasm/oth+unspc respiratory organs</td>
</tr>
<tr>
<td align="left">ByuC400</td>
<td align="left">[X]Secondary malignant neoplasm/oth+unspcfd digestive organs</td>
</tr>
<tr>
<td align="left">ByuC500</td>
<td align="left">[X]2ndry malignant neoplasm/bladder+oth+unsp urinary organs</td>
</tr>
<tr>
<td align="left">ByuC600</td>
<td align="left">[X]2ndry malignant neoplasm/oth+unspec parts/nervous system</td>
</tr>
<tr>
<td align="left">ByuC700</td>
<td align="left">[X]Secondary malignant neoplasm of other specified sites</td>
</tr>
</tbody>
</table>
<h4>Secondary care diagnoses (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//secondary_care/ICD_sec_other.csv'>ICD_sec_other.csv</a>)</h4>
<table>
<thead>
<tr>
<th>ICD-10 code</th>
<th>ICD-10 Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left">C78.1</td>
<td align="left">Secondary malignant neoplasm of mediastinum</td>
</tr>
<tr>
<td align="left">C78.3</td>
<td align="left">Secondary malignant neoplasm of other and unspecified respiratory organs</td>
</tr>
<tr>
<td align="left">C78.8</td>
<td align="left">Secondary malignant neoplasm of other and unspecified digestive organs</td>
</tr>
<tr>
<td align="left">C79.0</td>
<td align="left">Secondary malignant neoplasm of kidney and renal pelvis</td>
</tr>
<tr>
<td align="left">C79.1</td>
<td align="left">Secondary malignant neoplasm of bladder and other and unspecified urinary organs</td>
</tr>
<tr>
<td align="left">C79.2</td>
<td align="left">Secondary malignant neoplasm of skin</td>
</tr>
<tr>
<td align="left">C79.6</td>
<td align="left">Secondary malignant neoplasm of ovary</td>
</tr>
<tr>
<td align="left">C79.8</td>
<td align="left">Secondary malignant neoplasm of other specified sites</td>
</tr>
<tr>
<td align="left">C79.9</td>
<td align="left">Secondary malignant neoplasm, unspecified site</td>
</tr>
</tbody>
</table>
<h2>Secondary Malignancy_Pleura</h2>
<h4>Implementation</h4>
~~~
At the specified date, a patient is defined as having had Secondary Malignancy Pleura IF they meet the criteria for any of the following on or before the specified date. The earliest date on which the individual meets any of the following criteria on or before the specified date is defined as the first event date:
Primary care
1. Secondary Malignancy Pleura diagnosis or history of diagnosis during a consultation
OR
Secondary care
1. ALL diagnoses of Secondary Malignancy Pleura or history of diagnosis during a hospitalization
~~~
<h4>Primary care (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//primary_care/CPRD_sec_pleura.csv'>CPRD_sec_pleura.csv</a>)</h4>
<table>
<thead>
<tr>
<th>Read code</th>
<th>Read Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left">B572.00</td>
<td align="left">Secondary malignant neoplasm of pleura</td>
</tr>
</tbody>
</table>
<h4>Secondary care diagnoses (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//secondary_care/ICD_sec_pleura.csv'>ICD_sec_pleura.csv</a>)</h4>
<table>
<thead>
<tr>
<th>ICD-10 code</th>
<th>ICD-10 Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left">C78.2</td>
<td align="left">Secondary malignant neoplasm of pleura</td>
</tr>
</tbody>
</table>
<h2>Secondary Malignancy_retroperitoneum and peritoneum</h2>
<h4>Implementation</h4>
~~~
At the specified date, a patient is defined as having had Secondary Malignancy retroperitoneum and peritoneum IF they meet the criteria for any of the following on or before the specified date. The earliest date on which the individual meets any of the following criteria on or before the specified date is defined as the first event date:
Primary care
1. Secondary Malignancy_retroperitoneum and peritoneum diagnosis or history of diagnosis during a consultation
OR
Secondary care
1. ALL diagnoses of Secondary Malignancy_retroperitoneum and peritoneum or history of diagnosis during a hospitalization
~~~
<h4>Primary care (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//primary_care/CPRD_sec_peritoneum.csv'>CPRD_sec_peritoneum.csv</a>)</h4>
<table>
<thead>
<tr>
<th>Read code</th>
<th>Read Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left">B576000</td>
<td align="left">Secondary malignant neoplasm of retroperitoneum</td>
</tr>
<tr>
<td align="left">B576100</td>
<td align="left">Secondary malignant neoplasm of peritoneum</td>
</tr>
<tr>
<td align="left">B576200</td>
<td align="left">Malignant ascites</td>
</tr>
<tr>
<td align="left">B576.00</td>
<td align="left">Secondary malig neop of retroperitoneum and peritoneum</td>
</tr>
<tr>
<td align="left">B576z00</td>
<td align="left">Secondary malig neop of retroperitoneum or peritoneum NOS</td>
</tr>
</tbody>
</table>
<h4>Secondary care diagnoses (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//secondary_care/ICD_sec_peritoneum.csv'>ICD_sec_peritoneum.csv</a>)</h4>
<table>
<thead>
<tr>
<th>ICD-10 code</th>
<th>ICD-10 Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left">C78.6</td>
<td align="left">Secondary malignant neoplasm of retroperitoneum and peritoneum</td>
</tr>
</tbody>
</table>
<h2>Secondary malignancy_Liver and intrahepatic bile duct</h2>
<h4>Implementation</h4>
~~~
At the specified date, a patient is defined as having had Secondary malignancy Liver and intrahepatic bile duct IF they meet the criteria for any of the following on or before the specified date. The earliest date on which the individual meets any of the following criteria on or before the specified date is defined as the first event date:
Primary care
1. Secondary malignancy Liver and intrahepatic bile duct diagnosis or history of diagnosis during a consultation
OR
Secondary care
1. ALL diagnoses of Secondary malignancy Liver and intrahepatic bile duct or history of diagnosis during a hospitalization
~~~
<h4>Primary care (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//primary_care/CPRD_sec_liver.csv'>CPRD_sec_liver.csv</a>)</h4>
<table>
<thead>
<tr>
<th>Read code</th>
<th>Read Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left">B153.00</td>
<td align="left">Secondary malignant neoplasm of liver</td>
</tr>
<tr>
<td align="left">B577.00</td>
<td align="left">Secondary malignant neoplasm of liver</td>
</tr>
<tr>
<td align="left">B577.11</td>
<td align="left">Liver metastases</td>
</tr>
</tbody>
</table>
<h4>Secondary care diagnoses (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//secondary_care/ICD_sec_liver.csv'>ICD_sec_liver.csv</a>)</h4>
<table>
<thead>
<tr>
<th>ICD-10 code</th>
<th>ICD-10 Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left">C78.7</td>
<td align="left">Secondary malignant neoplasm of liver and intrahepatic bile duct</td>
</tr>
</tbody>
</table>
<h2>Secondary or other Thrombocytopaenia</h2>
<h4>Implementation</h4>
~~~
At the specified date, a patient is defined as having had Secondary or other Thrombocytopaenia IF they meet the criteria for any of the following on or before the specified date. The earliest date on which the individual meets any of the following criteria on or before the specified date is defined as the first event date:
Primary care
1. Secondary or other Thrombocytopaenia diagnosis or history of diagnosis during a consultation
OR
Secondary care (ICD10)
1. ALL diagnoses of Secondary or other Thrombocytopaenia or history of diagnosis during a hospitalization
~~~
<h4>Primary care (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//primary_care/CPRD_sec_oth_thrombocytopaenia.csv'>CPRD_sec_oth_thrombocytopaenia.csv</a>)</h4>
<table>
<thead>
<tr>
<th>Read code</th>
<th>Read Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left">42P2.00</td>
<td align="left">Thrombocytopenia</td>
</tr>
<tr>
<td align="left">42P8.00</td>
<td align="left">Heparin induced thrombocytopenia screening test</td>
</tr>
<tr>
<td align="left">C391200</td>
<td align="left">Wiskott - Aldrich syndrome</td>
</tr>
<tr>
<td align="left">C391211</td>
<td align="left">Thrombocytopenic eczema with immunodeficiency</td>
</tr>
<tr>
<td align="left">D314100</td>
<td align="left">Thrombocytopenia due to drugs</td>
</tr>
<tr>
<td align="left">D314200</td>
<td align="left">Thrombocytopenia due to extracorporeal circulation of blood</td>
</tr>
<tr>
<td align="left">D314300</td>
<td align="left">Heparin-induced thrombocytopenia</td>
</tr>
<tr>
<td align="left">D314.00</td>
<td align="left">Secondary thrombocytopenia</td>
</tr>
<tr>
<td align="left">D314y00</td>
<td align="left">Other specified secondary thrombocytopenia</td>
</tr>
<tr>
<td align="left">D314z00</td>
<td align="left">Secondary thrombocytopenia NOS</td>
</tr>
<tr>
<td align="left">D315.00</td>
<td align="left">Thrombocytopenia NOS</td>
</tr>
<tr>
<td align="left">G756100</td>
<td align="left">Thrombotic thrombocytopenic purpura</td>
</tr>
</tbody>
</table>
<h4>Secondary care diagnoses (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//secondary_care/ICD_sec_oth_thrombocytopaenia.csv'>ICD_sec_oth_thrombocytopaenia.csv</a>)</h4>
<table>
<thead>
<tr>
<th>ICD-10 code</th>
<th>ICD-10 Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left">D69.5</td>
<td align="left">Secondary thrombocytopenia</td>
</tr>
<tr>
<td align="left">D69.6</td>
<td align="left">Thrombocytopenia, unspecified</td>
</tr>
<tr>
<td align="left">D82.0</td>
<td align="left">Wiskott-Aldrich syndrome</td>
</tr>
<tr>
<td align="left">M31.1</td>
<td align="left">Thrombotic microangiopathy</td>
</tr>
</tbody>
</table>
<h2>Secondary polycythaemia</h2>
<h4>Implementation</h4>
~~~
At the specified date, a patient is defined as having had 'Secondary polycythaemia' IF they meet the criteria for any of the following on or before the specified date. The earliest date on which the individual meets any of the following criteria on or before the specified date is defined as the first event date:
Primary care
1. 'Secondary polycythaemia' diagnosis or history of diagnosis during a consultation
OR
Secondary care (ICD10)
1. ALL diagnoses of 'Secondary polycythaemia' or history of diagnosis during a hospitalization
~~~
<h4>Primary care (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//primary_care/CPRD_2ry_polycythaemia.csv'>CPRD_2ry_polycythaemia.csv</a>)</h4>
<table>
<thead>
<tr>
<th>Read code</th>
<th>Read Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left">D410000</td>
<td align="left">Stress polycythaemia</td>
</tr>
<tr>
<td align="left">D410011</td>
<td align="left">Spurious polycythaemia</td>
</tr>
<tr>
<td align="left">D410100</td>
<td align="left">High altitude polycythaemia</td>
</tr>
<tr>
<td align="left">D410200</td>
<td align="left">Polycythaemia due to cyanotic heart disease</td>
</tr>
<tr>
<td align="left">D410300</td>
<td align="left">Polycythaemia due to cyanotic respiratory disease</td>
</tr>
<tr>
<td align="left">D410400</td>
<td align="left">Renal polycythaemia</td>
</tr>
<tr>
<td align="left">D410.00</td>
<td align="left">Secondary polycythaemia</td>
</tr>
<tr>
<td align="left">D410z00</td>
<td align="left">Secondary polycythaemia NOS</td>
</tr>
</tbody>
</table>
<h4>Secondary care diagnoses (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//secondary_care/ICD_2ry_polycythaemia.csv'>ICD_2ry_polycythaemia.csv</a>)</h4>
<table>
<thead>
<tr>
<th>ICD-10 code</th>
<th>ICD-10 Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left">D75.1</td>
<td align="left">Secondary polycythaemia</td>
</tr>
</tbody>
</table>
<h2>Secondary pulmonary hypertension</h2>
<h4>Implementation</h4>
~~~
At the specified date, a patient is defined as having had 'Secondary pulmonary hypertension' IF they meet the criteria for any of the following on or before the specified date. The earliest date on which the individual meets any of the following criteria on or before the specified date is defined as the first event date:
Primary care
1. 'Secondary pulmonary hypertension' diagnosis or history of diagnosis during a consultation
OR
Secondary care (ICD10)
1. ALL diagnoses of 'Secondary pulmonary hypertension' or history of diagnosis during a hospitalization
~~~
<h4>Primary care (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//primary_care/CPRD_sec_pulm_htn.csv'>CPRD_sec_pulm_htn.csv</a>)</h4>
<table>
<thead>
<tr>
<th>Read code</th>
<th>Read Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left">G41y000</td>
<td align="left">Secondary pulmonary hypertension</td>
</tr>
<tr>
<td align="left">G41y100</td>
<td align="left">Thromboembolic pulmonary hypertension</td>
</tr>
</tbody>
</table>
<h4>Secondary care diagnoses (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//secondary_care/ICD_sec_pulm_htn.csv'>ICD_sec_pulm_htn.csv</a>)</h4>
<table>
<thead>
<tr>
<th>ICD-10 code</th>
<th>ICD-10 Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left">I27.2</td>
<td align="left">Other secondary pulmonary hypertension</td>
</tr>
</tbody>
</table>
<h2>Septicaemia</h2>
<h4>Implementation</h4>
~~~
At the specified date, a patient is defined as having had 'Septicaemia' IF they meet the criteria for any of the following on or before the specified date. The earliest date on which the individual meets any of the following criteria on or before the specified date is defined as the first event date:
Secondary care
1. ALL diagnoses of 'Septicaemia' or history of diagnosis during a hospitalization
~~~
<h4>Secondary care diagnoses (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//secondary_care/ICD_sepsis.csv'>ICD_sepsis.csv</a>)</h4>
<table>
<thead>
<tr>
<th>ICD-10 code</th>
<th>ICD-10 Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left">A02.1</td>
<td align="left">Salmonella sepsis</td>
</tr>
<tr>
<td align="left">A20.7</td>
<td align="left">Septicaemic plague</td>
</tr>
<tr>
<td align="left">A22.7</td>
<td align="left">Anthrax sepsis</td>
</tr>
<tr>
<td align="left">A26.7</td>
<td align="left">Erysipelothrix sepsis</td>
</tr>
<tr>
<td align="left">A32.7</td>
<td align="left">Listerial sepsis</td>
</tr>
<tr>
<td align="left">A39.1</td>
<td align="left">Waterhouse-Friderichsen syndrome</td>
</tr>
<tr>
<td align="left">A39.2</td>
<td align="left">Acute meningococcaemia</td>
</tr>
<tr>
<td align="left">A39.3</td>
<td align="left">Chronic meningococcaemia</td>
</tr>
<tr>
<td align="left">A39.4</td>
<td align="left">Meningococcaemia, unspecified</td>
</tr>
<tr>
<td align="left">A40</td>
<td align="left">Streptococcal sepsis</td>
</tr>
<tr>
<td align="left">A41</td>
<td align="left">Other sepsis</td>
</tr>
<tr>
<td align="left">A42.7</td>
<td align="left">Actinomycotic sepsis</td>
</tr>
<tr>
<td align="left">B37.7</td>
<td align="left">Candidal sepsis</td>
</tr>
<tr>
<td align="left">P36</td>
<td align="left">Bacterial sepsis of newborn</td>
</tr>
</tbody>
</table>
<h2>Sick sinus syndrome</h2>
<h4>Implementation</h4>
~~~
At the specified date, a patient is defined as having had 'Sick sinus syndrome' IF they meet the criteria for any of the following on or before the specified date. The earliest date on which the individual meets any of the following criteria on or before the specified date is defined as the first event date:
Primary care
1. 'Sick sinus syndrome' diagnosis or history of diagnosis during a consultation
OR
Secondary care (ICD10)
1. ALL diagnoses of 'Sick sinus syndrome' or history of diagnosis during a hospitalization
~~~
<h4>Primary care (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//primary_care/CPRD_sick_sinus.csv'>CPRD_sick_sinus.csv</a>)</h4>
<table>
<thead>
<tr>
<th>Read code</th>
<th>Read Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left">G57y300</td>
<td align="left">Sick sinus syndrome</td>
</tr>
<tr>
<td align="left">G57y400</td>
<td align="left">Sinoatrial node dysfunction NOS</td>
</tr>
</tbody>
</table>
<h4>Secondary care diagnoses (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//secondary_care/ICD_sick_sinus.csv'>ICD_sick_sinus.csv</a>)</h4>
<table>
<thead>
<tr>
<th>ICD-10 code</th>
<th>ICD-10 Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left">I49.5</td>
<td align="left">Sick sinus syndrome</td>
</tr>
</tbody>
</table>
<h2>Sickle-cell anaemia</h2>
<h4>Implementation</h4>
~~~
At the specified date, a patient is defined as having had Sickle-cell anaemia IF they meet the criteria for any of the following on or before the specified date. The earliest date on which the individual meets any of the following criteria on or before the specified date is defined as the first event date:
Primary care
1. Sickle-cell anaemia diagnosis or history of diagnosis during a consultation
OR
Secondary care (ICD10)
1. ALL diagnoses of Sickle-cell anaemia or history of diagnosis during a hospitalization
~~~
<h4>Primary care (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//primary_care/CPRD_sickle_cell.csv'>CPRD_sickle_cell.csv</a>)</h4>
<table>
<thead>
<tr>
<th>Read code</th>
<th>Read Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="right">1458</td>
<td align="left">History of sickle cell anaemia</td>
</tr>
<tr>
<td align="left">D104211</td>
<td align="left">Sickle-cell thalassaemia</td>
</tr>
<tr>
<td align="left">D106000</td>
<td align="left">Sickle-cell anaemia of unspecified type</td>
</tr>
<tr>
<td align="left">D106100</td>
<td align="left">Sickle-cell anaemia with no crisis</td>
</tr>
<tr>
<td align="left">D106200</td>
<td align="left">Sickle-cell anaemia with crisis</td>
</tr>
<tr>
<td align="left">D106300</td>
<td align="left">Sickle-cell anaemia with haemoglobin C disease</td>
</tr>
<tr>
<td align="left">D106400</td>
<td align="left">Sickle-cell anaemia with haemoglobin D disease</td>
</tr>
<tr>
<td align="left">D106500</td>
<td align="left">Sickle-cell anaemia with haemoglobin E disease</td>
</tr>
<tr>
<td align="left">D106.00</td>
<td align="left">Sickle-cell anaemia</td>
</tr>
<tr>
<td align="left">D106z00</td>
<td align="left">Sickle-cell anaemia NOS</td>
</tr>
<tr>
<td align="left">Dyu1200</td>
<td align="left">[X]Other sickle-cell disorders</td>
</tr>
<tr>
<td align="left">F422100</td>
<td align="left">Proliferative retinopathy due to sickle cell disease</td>
</tr>
<tr>
<td align="left">K0G..00</td>
<td align="left">Sickle cell nephropathy</td>
</tr>
</tbody>
</table>
<h4>Secondary care diagnoses (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//secondary_care/ICD_sickle_cell.csv'>ICD_sickle_cell.csv</a>)</h4>
<table>
<thead>
<tr>
<th>ICD-10 code</th>
<th>ICD-10 Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left">D57.0</td>
<td align="left">Sickle-cell anaemia with crisis</td>
</tr>
<tr>
<td align="left">D57.1</td>
<td align="left">Sickle-cell anaemia without crisis</td>
</tr>
<tr>
<td align="left">D57.2</td>
<td align="left">Double heterozygous sickling disorders</td>
</tr>
<tr>
<td align="left">D57.8</td>
<td align="left">Other sickle-cell disorders</td>
</tr>
</tbody>
</table>
<h2>Sickle-cell trait</h2>
<h4>Implementation</h4>
~~~
At the specified date, a patient is defined as having had Sickle-cell trait IF they meet the criteria for any of the following on or before the specified date. The earliest date on which the individual meets any of the following criteria on or before the specified date is defined as the first event date:
Primary care
1. Sickle-cell trait diagnosis or history of diagnosis during a consultation
OR
Secondary care (ICD10)
1. ALL diagnoses of Sickle-cell trait or history of diagnosis during a hospitalization
~~~
<h4>Primary care (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//primary_care/CPRD_sickle_trait.csv'>CPRD_sickle_trait.csv</a>)</h4>
<table>
<thead>
<tr>
<th>Read code</th>
<th>Read Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left">677C600</td>
<td align="left">Sickle cell gene carrier</td>
</tr>
<tr>
<td align="left">D105.00</td>
<td align="left">Sickle-cell trait</td>
</tr>
</tbody>
</table>
<h4>Secondary care diagnoses (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//secondary_care/ICD_sickle_trait.csv'>ICD_sickle_trait.csv</a>)</h4>
<table>
<thead>
<tr>
<th>ICD-10 code</th>
<th>ICD-10 Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left">D57.3</td>
<td align="left">Sickle-cell trait</td>
</tr>
</tbody>
</table>
<h2>Sjogren's disease</h2>
<h4>Implementation</h4>
~~~
At the specified date, a patient is defined as having had Sjogren's disease IF they meet the criteria for any of the following on or before the specified date. The earliest date on which the individual meets any of the following criteria on or before the specified date is defined as the first event date:
Primary care
1. Sjogren's disease diagnosis or history of diagnosis during a consultation
OR
Secondary care (ICD10)
1. ALL diagnoses of Sjogren's disease or history of diagnosis during a hospitalization
~~~
<h4>Primary care (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//primary_care/CPRD_sjogren.csv'>CPRD_sjogren.csv</a>)</h4>
<table>
<thead>
<tr>
<th>Read code</th>
<th>Read Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left">F396700</td>
<td align="left">Myopathy due to Sjogren's disease</td>
</tr>
<tr>
<td align="left">H57y300</td>
<td align="left">Lung disease with Sjogren's disease</td>
</tr>
<tr>
<td align="left">N002.00</td>
<td align="left">Sicca (Sjogren's) syndrome</td>
</tr>
</tbody>
</table>
<h4>Secondary care diagnoses (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//secondary_care/ICD_sjogren.csv'>ICD_sjogren.csv</a>)</h4>
<table>
<thead>
<tr>
<th>ICD-10 code</th>
<th>ICD-10 Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left">M35.0</td>
<td align="left">Sicca syndrome [Sjögren]</td>
</tr>
</tbody>
</table>
<h2>Sleep apnoea</h2>
<h4>Implementation</h4>
~~~
At the specified date, a patient is defined as having had 'Sleep apnoea' IF they meet the criteria for any of the following on or before the specified date. The earliest date on which the individual meets any of the following criteria on or before the specified date is defined as the first event date:
Primary care
1. 'Sleep apnoea' diagnosis or history of diagnosis during a consultation
OR
Secondary care
1. ALL diagnoses of 'Sleep apnoea' or history of diagnosis during a hospitalization
~~~
<h4>Primary care (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//primary_care/CPRD_sleep_apnoea.csv'>CPRD_sleep_apnoea.csv</a>)</h4>
<table>
<thead>
<tr>
<th>Read code</th>
<th>Read Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left">Fy03.00</td>
<td align="left">Sleep apnoea</td>
</tr>
<tr>
<td align="left">Fy03.11</td>
<td align="left">Obstructive sleep apnoea</td>
</tr>
<tr>
<td align="left">H5B0.00</td>
<td align="left">Obstructive sleep apnoea</td>
</tr>
<tr>
<td align="left">H5B..00</td>
<td align="left">Sleep apnoea</td>
</tr>
<tr>
<td align="left">R005100</td>
<td align="left">[D]Insomnia with sleep apnoea</td>
</tr>
<tr>
<td align="left">R005300</td>
<td align="left">[D]Hypersomnia with sleep apnoea</td>
</tr>
<tr>
<td align="left">R005311</td>
<td align="left">[D]Sleep apnoea syndrome</td>
</tr>
<tr>
<td align="left">R005312</td>
<td align="left">[D]Syndrome sleep apnoea</td>
</tr>
</tbody>
</table>
<h4>Secondary care diagnoses (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//secondary_care/ICD_sleep_apnoea.csv'>ICD_sleep_apnoea.csv</a>)</h4>
<table>
<thead>
<tr>
<th>ICD-10 code</th>
<th>ICD-10 Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left">G47.3</td>
<td align="left">Sleep apnoea</td>
</tr>
</tbody>
</table>
<h2>Slow fetal growth or low birth weight</h2>
<h4>Implementation</h4>
~~~
At the specified date, a patient is defined as having had Slow fetal growth or 'Slow fetal growth or low birth weight' IF they meet the criteria for any of the following on or before the specified date. The earliest date on which the individual meets any of the following criteria on or before the specified date is defined as the first event date:
Primary care
1. Slow fetal growth or 'Slow fetal growth or low birth weight' diagnosis or history of diagnosis during a consultation AND IF the patient is aged < 1y at the first event date
OR
Secondary care
1. ALL diagnoses of Slow fetal growth or 'Slow fetal growth or low birth weight' or history of diagnosis during a hospitalization AND IF the patient is aged < 1y at the first event date
~~~
<h4>Primary care (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//primary_care/CPRD_LBW.csv'>CPRD_LBW.csv</a>)</h4>
<table>
<thead>
<tr>
<th>Read code</th>
<th>Read Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left">L265000</td>
<td align="left">Small-for-dates unspecified</td>
</tr>
<tr>
<td align="left">L265100</td>
<td align="left">Small-for-dates - delivered</td>
</tr>
<tr>
<td align="left">L265200</td>
<td align="left">Small-for-dates with antenatal problem</td>
</tr>
<tr>
<td align="left">L265.00</td>
<td align="left">Small-for-dates fetus in pregnancy</td>
</tr>
<tr>
<td align="left">L265z00</td>
<td align="left">Small-for-dates NOS</td>
</tr>
<tr>
<td align="left">Q10..00</td>
<td align="left">Slow fetal growth and fetal malnutrition</td>
</tr>
<tr>
<td align="left">Q100.00</td>
<td align="left">Fetus small-for-dates, without mention of malnutrition</td>
</tr>
<tr>
<td align="left">Q100.11</td>
<td align="left">Fetus small-for-dates (SFD), without mention of malnutrition</td>
</tr>
<tr>
<td align="left">Q101.00</td>
<td align="left">Fetus small-for-dates with signs of malnutrition</td>
</tr>
<tr>
<td align="left">Q101.11</td>
<td align="left">Fetus small-for-dates (SFD) with signs of malnutrition</td>
</tr>
<tr>
<td align="left">Q10z.00</td>
<td align="left">Fetal growth retardation NOS</td>
</tr>
<tr>
<td align="left">Q10z.11</td>
<td align="left">Intrauterine growth retardation</td>
</tr>
<tr>
<td align="left">Q11..00</td>
<td align="left">Short gestation and unspecified low birthweight problems</td>
</tr>
<tr>
<td align="left">Q110.00</td>
<td align="left">Very premature - less than 1000g or less than 28 weeks</td>
</tr>
<tr>
<td align="left">Q111.00</td>
<td align="left">Premature - weight 1000g-2499g or gestation of 28-37weeks</td>
</tr>
<tr>
<td align="left">Q113.00</td>
<td align="left">Light for gestational age</td>
</tr>
<tr>
<td align="left">Q114.00</td>
<td align="left">Low birthweight</td>
</tr>
<tr>
<td align="left">Q114000</td>
<td align="left">Birth weight 1000-2499 g</td>
</tr>
<tr>
<td align="left">Q115.00</td>
<td align="left">Extremely low birth weight infant</td>
</tr>
<tr>
<td align="left">Q115000</td>
<td align="left">Birth weight 999 g or less</td>
</tr>
<tr>
<td align="left">Q13..00</td>
<td align="left">Light for gestational age</td>
</tr>
<tr>
<td align="left">Qyu1000</td>
<td align="left">[X]Other low birth weight</td>
</tr>
</tbody>
</table>
<h4>Secondary care diagnoses (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//secondary_care/ICD_LBW.csv'>ICD_LBW.csv</a>)</h4>
<table>
<thead>
<tr>
<th>ICD-10 code</th>
<th>ICD-10 Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left">P05.0</td>
<td align="left">Light for gestational age</td>
</tr>
<tr>
<td align="left">P05.1</td>
<td align="left">Small for gestational age</td>
</tr>
<tr>
<td align="left">P05.9</td>
<td align="left">Slow fetal growth, unspecified</td>
</tr>
<tr>
<td align="left">P07.0</td>
<td align="left">Extremely low birth weight</td>
</tr>
<tr>
<td align="left">P07.1</td>
<td align="left">Other low birth weight</td>
</tr>
</tbody>
</table>
<h2>Spina bifida</h2>
<h4>Implementation</h4>
~~~
At the specified date, a patient is defined as having had 'Spina bifida' IF they meet the criteria for any of the following on or before the specified date. The earliest date on which the individual meets any of the following criteria on or before the specified date is defined as the first event date:
Primary care
1. 'Spina bifida' diagnosis or history of diagnosis or procedure during a consultation
OR
Secondary care (ICD10)
1. ALL diagnoses of 'Spina bifida' or history of diagnosis during a hospitalization
OR
Secondary care (OPCS4)
1. ALL procedures for 'Spina bifida' during a hospitalization
~~~
<h4>Primary care (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//primary_care/CPRD_spina_bifida.csv'>CPRD_spina_bifida.csv</a>)</h4>
<table>
<thead>
<tr>
<th>Read code</th>
<th>Read Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="right">7010111</td>
<td align="left">Insertion of Halber valve for spina bifida</td>
</tr>
<tr>
<td align="right">7043100</td>
<td align="left">Closure of spinal myelomeningocele</td>
</tr>
<tr>
<td align="right">7043200</td>
<td align="left">Closure of spinal meningocele</td>
</tr>
<tr>
<td align="right">7043</td>
<td align="left">Repair of spina bifida</td>
</tr>
<tr>
<td align="left">7043y00</td>
<td align="left">Other specified repair of spina bifida</td>
</tr>
<tr>
<td align="left">7043z00</td>
<td align="left">Repair of spina bifida NOS</td>
</tr>
<tr>
<td align="left">P100000</td>
<td align="left">Spina bifida with hydrocephalus, unspecified</td>
</tr>
<tr>
<td align="left">P100100</td>
<td align="left">Cervical spina bifida with hydrocephalus</td>
</tr>
<tr>
<td align="left">P100200</td>
<td align="left">Thoracic spina bifida with hydrocephalus</td>
</tr>
<tr>
<td align="left">P100300</td>
<td align="left">Lumbar spina bifida with hydrocephalus</td>
</tr>
<tr>
<td align="left">P100.00</td>
<td align="left">Unspecified spina bifida with hydrocephalus</td>
</tr>
<tr>
<td align="left">P100z00</td>
<td align="left">Spina bifida with hydrocephalus NOS</td>
</tr>
<tr>
<td align="left">P101.11</td>
<td align="left">Closed spina bifida with Arnold-Chiari malformation</td>
</tr>
<tr>
<td align="left">P102200</td>
<td align="left">Thoracic spina bifida with hydrocephalus - open</td>
</tr>
<tr>
<td align="left">P102300</td>
<td align="left">Lumbar spina bifida with hydrocephalus - open</td>
</tr>
<tr>
<td align="left">P102400</td>
<td align="left">Sacral spina bifida with hydrocephalus - open</td>
</tr>
<tr>
<td align="left">P102.00</td>
<td align="left">Spina bifida with hydrocephalus - open</td>
</tr>
<tr>
<td align="left">P102.11</td>
<td align="left">Fissured spine with hydrocephalus</td>
</tr>
<tr>
<td align="left">P102.13</td>
<td align="left">Myelocele with hydrocephalus</td>
</tr>
<tr>
<td align="left">P102.14</td>
<td align="left">Rachischisis with hydrocephalus</td>
</tr>
<tr>
<td align="left">P102z00</td>
<td align="left">Spina bifida with hydrocephalus - open NOS</td>
</tr>
<tr>
<td align="left">P103300</td>
<td align="left">Lumbar spina bifida with hydrocephalus - closed</td>
</tr>
<tr>
<td align="left">P103400</td>
<td align="left">Sacral spina bifida with hydrocephalus - closed</td>
</tr>
<tr>
<td align="left">P103.00</td>
<td align="left">Spina bifida with hydrocephalus - closed</td>
</tr>
<tr>
<td align="left">P103z11</td>
<td align="left">Thoracolumbar spina bifida with hydrocephalus - closed</td>
</tr>
<tr>
<td align="left">P104.00</td>
<td align="left">Spina bifida with hydrocephalus of late onset</td>
</tr>
<tr>
<td align="left">P105.00</td>
<td align="left">Spina bifida with stenosis of aqueduct of Sylvius</td>
</tr>
<tr>
<td align="left">P10..00</td>
<td align="left">Spina bifida with hydrocephalus</td>
</tr>
<tr>
<td align="left">P10y000</td>
<td align="left">Dandy - Walker syndrome with spina bifida</td>
</tr>
<tr>
<td align="left">P10y.00</td>
<td align="left">Other specified spina bifida with hydrocephalus</td>
</tr>
<tr>
<td align="left">P10z.00</td>
<td align="left">Spina bifida with hydrocephalus NOS</td>
</tr>
<tr>
<td align="left">P110000</td>
<td align="left">Spina bifida without hydrocephalus, site unspecified</td>
</tr>
<tr>
<td align="left">P110100</td>
<td align="left">Cervical spina bifida without mention of hydrocephalus</td>
</tr>
<tr>
<td align="left">P110200</td>
<td align="left">Thoracic spina bifida without mention of hydrocephalus</td>
</tr>
<tr>
<td align="left">P110300</td>
<td align="left">Lumbar spina bifida without mention of hydrocephalus</td>
</tr>
<tr>
<td align="left">P110z00</td>
<td align="left">Unspecified spina bifida without hydrocephalus NOS</td>
</tr>
<tr>
<td align="left">P111.00</td>
<td align="left">Spinal hydromeningocele</td>
</tr>
<tr>
<td align="left">P112.00</td>
<td align="left">Hydromyelocele</td>
</tr>
<tr>
<td align="left">P113000</td>
<td align="left">Spinal meningocele of unspecified site</td>
</tr>
<tr>
<td align="left">P113100</td>
<td align="left">Cervical spinal meningocele</td>
</tr>
<tr>
<td align="left">P113200</td>
<td align="left">Thoracic spinal meningocele</td>
</tr>
<tr>
<td align="left">P113300</td>
<td align="left">Lumbar spinal meningocele</td>
</tr>
<tr>
<td align="left">P113.00</td>
<td align="left">Spinal meningocele</td>
</tr>
<tr>
<td align="left">P113z00</td>
<td align="left">Spinal meningocele NOS</td>
</tr>
<tr>
<td align="left">P114000</td>
<td align="left">Meningomyelocele of unspecified site</td>
</tr>
<tr>
<td align="left">P114100</td>
<td align="left">Cervical meningomyelocele</td>
</tr>
<tr>
<td align="left">P114200</td>
<td align="left">Thoracic meningomyelocele</td>
</tr>
<tr>
<td align="left">P114300</td>
<td align="left">Lumbar meningomyelocele</td>
</tr>
<tr>
<td align="left">P114.00</td>
<td align="left">Meningomyelocele</td>
</tr>
<tr>
<td align="left">P114z00</td>
<td align="left">Meningomyelocele NOS</td>
</tr>
<tr>
<td align="left">P115100</td>
<td align="left">Cervical myelocele</td>
</tr>
<tr>
<td align="left">P115300</td>
<td align="left">Lumbar myelocele</td>
</tr>
<tr>
<td align="left">P115.00</td>
<td align="left">Myelocele</td>
</tr>
<tr>
<td align="left">P115z00</td>
<td align="left">Myelocele NOS</td>
</tr>
<tr>
<td align="left">P116100</td>
<td align="left">Cervical myelocystocele</td>
</tr>
<tr>
<td align="left">P116300</td>
<td align="left">Lumbar myelocystocele</td>
</tr>
<tr>
<td align="left">P116.00</td>
<td align="left">Myelocystocele</td>
</tr>
<tr>
<td align="left">P116z00</td>
<td align="left">Myelocystocele NOS</td>
</tr>
<tr>
<td align="left">P117200</td>
<td align="left">Thoracic spina bifida without hydrocephalus - open</td>
</tr>
<tr>
<td align="left">P117300</td>
<td align="left">Lumbar spina bifida without hydrocephalus - open</td>
</tr>
<tr>
<td align="left">P117400</td>
<td align="left">Sacral spina bifida without hydrocephalus - open</td>
</tr>
<tr>
<td align="left">P117.00</td>
<td align="left">Spina bifida without hydrocephalus - open</td>
</tr>
<tr>
<td align="left">P117.11</td>
<td align="left">Fissured spine</td>
</tr>
<tr>
<td align="left">P117.12</td>
<td align="left">Rachischisis</td>
</tr>
<tr>
<td align="left">P117z00</td>
<td align="left">Spina bifida without hydrocephalus - open NOS</td>
</tr>
<tr>
<td align="left">P118000</td>
<td align="left">Unspecified spina bifida without hydrocephalus - closed</td>
</tr>
<tr>
<td align="left">P118100</td>
<td align="left">Cervical spina bifida without hydrocephalus - closed</td>
</tr>
<tr>
<td align="left">P118300</td>
<td align="left">Lumbar spina bifida without hydrocephalus - closed</td>
</tr>
<tr>
<td align="left">P118400</td>
<td align="left">Sacral spina bifida without hydrocephalus - closed</td>
</tr>
<tr>
<td align="left">P118.00</td>
<td align="left">Spina bifida without hydrocephalus - closed</td>
</tr>
<tr>
<td align="left">P118z00</td>
<td align="left">Spina bifida without hydrocephalus - closed NOS</td>
</tr>
<tr>
<td align="left">P11..00</td>
<td align="left">Spina bifida without mention of hydrocephalus</td>
</tr>
<tr>
<td align="left">P11y.00</td>
<td align="left">Other specified spina bifida without hydrocephalus</td>
</tr>
<tr>
<td align="left">P11y.11</td>
<td align="left">Syringomyelocele</td>
</tr>
<tr>
<td align="left">P11z.00</td>
<td align="left">Spina bifida without mention of hydrocephalus NOS</td>
</tr>
<tr>
<td align="left">P1...00</td>
<td align="left">Spina bifida</td>
</tr>
<tr>
<td align="left">P1z..00</td>
<td align="left">Spina bifida NOS</td>
</tr>
<tr>
<td align="left">PG17.00</td>
<td align="left">Spina bifida occulta</td>
</tr>
<tr>
<td align="left">Pyu0400</td>
<td align="left">[X]Unspecified spina bifida with hydrocephalus</td>
</tr>
</tbody>
</table>
<h4>Secondary care diagnoses (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//secondary_care/ICD_spina_bifida.csv'>ICD_spina_bifida.csv</a>)</h4>
<table>
<thead>
<tr>
<th>ICD-10 code</th>
<th>ICD-10 Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left">Q05</td>
<td align="left">Spina bifida</td>
</tr>
<tr>
<td align="left">Q76.0</td>
<td align="left">Spina bifida occulta</td>
</tr>
</tbody>
</table>
<h4>Secondary care procedures (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//secondary_care/OPCS_spina_bifida.csv'>OPCS_spina_bifida.csv</a>)</h4>
<table>
<thead>
<tr>
<th>OPCS-4 code</th>
<th>OPCS-4 Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left">A49</td>
<td align="left">Repair of spina bifida</td>
</tr>
<tr>
<td align="left">A49.1</td>
<td align="left">Freeing of spinal tether NEC</td>
</tr>
<tr>
<td align="left">A49.2</td>
<td align="left">Closure of spinal myelomeningocele</td>
</tr>
<tr>
<td align="left">A49.3</td>
<td align="left">Closure of spinal meningocele</td>
</tr>
<tr>
<td align="left">A49.4</td>
<td align="left">Complex freeing of spinal tether</td>
</tr>
<tr>
<td align="left">A49.8</td>
<td align="left">Other specified repair of spina bifida</td>
</tr>
<tr>
<td align="left">A49.9</td>
<td align="left">Unspecified repair of spina bifida</td>
</tr>
</tbody>
</table>
<h2>Spinal stenosis</h2>
<h4>Implementation</h4>
~~~
At the specified date, a patient is defined as having had 'Spinal stenosis' IF they meet the criteria for any of the following on or before the specified date. The earliest date on which the individual meets any of the following criteria on or before the specified date is defined as the first event date:
Primary care
1. 'Spinal stenosis' diagnosis or history of diagnosis during a consultation
OR
Secondary care (ICD10)
1. ALL diagnoses of 'Spinal stenosis' or history of diagnosis during a hospitalization
~~~
<h4>Primary care (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//primary_care/CPRD_spinal_stenosis.csv'>CPRD_spinal_stenosis.csv</a>)</h4>
<table>
<thead>
<tr>
<th>Read code</th>
<th>Read Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left">N130000</td>
<td align="left">Idiopathic cervical spinal stenosis</td>
</tr>
<tr>
<td align="left">N130100</td>
<td align="left">Degenerative cervical spinal stenosis</td>
</tr>
<tr>
<td align="left">N130300</td>
<td align="left">Cervical spinal stenosis secondary to other disease</td>
</tr>
<tr>
<td align="left">N130.00</td>
<td align="left">Cervical spinal stenosis</td>
</tr>
<tr>
<td align="left">N140000</td>
<td align="left">Spinal stenosis of unspecified region</td>
</tr>
<tr>
<td align="left">N140100</td>
<td align="left">Thoracic spinal stenosis</td>
</tr>
<tr>
<td align="left">N140200</td>
<td align="left">Lumbar spinal stenosis</td>
</tr>
<tr>
<td align="left">N140300</td>
<td align="left">Idiopathic thoracic spinal stenosis</td>
</tr>
<tr>
<td align="left">N140400</td>
<td align="left">Degenerative thoracic spinal stenosis</td>
</tr>
<tr>
<td align="left">N140600</td>
<td align="left">Thoracic spinal stenosis secondary to other disease</td>
</tr>
<tr>
<td align="left">N140700</td>
<td align="left">Idiopathic lumbar spinal stenosis</td>
</tr>
<tr>
<td align="left">N140800</td>
<td align="left">Degenerative lumbar spinal stenosis</td>
</tr>
<tr>
<td align="left">N140900</td>
<td align="left">Iatrogenic lumbar spinal stenosis</td>
</tr>
<tr>
<td align="left">N140A00</td>
<td align="left">Lumbar spinal stenosis secondary to other disease</td>
</tr>
<tr>
<td align="left">N140.00</td>
<td align="left">Spinal stenosis, excluding cervical region</td>
</tr>
<tr>
<td align="left">N140.11</td>
<td align="left">Spinal stenosis</td>
</tr>
<tr>
<td align="left">N140z00</td>
<td align="left">Spinal stenosis NOS</td>
</tr>
<tr>
<td align="left">Zw04300</td>
<td align="left">[Q] Central spinal stenosis</td>
</tr>
<tr>
<td align="left">Zw04400</td>
<td align="left">[Q] Lateral spinal stenosis</td>
</tr>
<tr>
<td align="left">Zw04500</td>
<td align="left">[Q] Central and lateral spinal stenosis</td>
</tr>
</tbody>
</table>
<h4>Secondary care diagnoses (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//secondary_care/ICD_spinal_stenosis.csv'>ICD_spinal_stenosis.csv</a>)</h4>
<table>
<thead>
<tr>
<th>ICD-10 code</th>
<th>ICD-10 Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left">M48.0</td>
<td align="left">Spinal stenosis</td>
</tr>
</tbody>
</table>
<h2>Splenomegaly</h2>
<h4>Implementation</h4>
~~~
At the specified date, a patient is defined as having had Splenomegaly IF they meet the criteria for any of the following on or before the specified date. The earliest date on which the individual meets any of the following criteria on or before the specified date is defined as the first event date:
Primary care
1. Splenomegaly diagnosis or history of diagnosis during a consultation
OR
Secondary care (ICD10)
1. ALL diagnoses of Splenomegaly or history of diagnosis during a hospitalization
~~~
<h4>Primary care (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//primary_care/CPRD_splenomegaly.csv'>CPRD_splenomegaly.csv</a>)</h4>
<table>
<thead>
<tr>
<th>Read code</th>
<th>Read Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left">D414.00</td>
<td align="left">Hypersplenism</td>
</tr>
<tr>
<td align="left">D415100</td>
<td align="left">Chronic congestive splenamegaly</td>
</tr>
<tr>
<td align="left">J61y200</td>
<td align="left">Hepatosplenomegaly</td>
</tr>
<tr>
<td align="left">PK03.00</td>
<td align="left">Congenital splenomegaly</td>
</tr>
<tr>
<td align="left">PK03.11</td>
<td align="left">Hyperplasia of spleen</td>
</tr>
<tr>
<td align="left">R092000</td>
<td align="left">[D]Spleen enlargement</td>
</tr>
<tr>
<td align="left">R092.00</td>
<td align="left">[D]Splenomegaly</td>
</tr>
<tr>
<td align="left">R092z00</td>
<td align="left">[D]Splenomegaly NOS</td>
</tr>
</tbody>
</table>
<h4>Secondary care diagnoses (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//secondary_care/ICD_splenomegaly.csv'>ICD_splenomegaly.csv</a>)</h4>
<table>
<thead>
<tr>
<th>ICD-10 code</th>
<th>ICD-10 Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left">D73.1</td>
<td align="left">Hypersplenism</td>
</tr>
<tr>
<td align="left">D73.2</td>
<td align="left">Chronic congestive splenomegaly</td>
</tr>
<tr>
<td align="left">R16.1</td>
<td align="left">Splenomegaly, not elsewhere classified</td>
</tr>
<tr>
<td align="left">R16.2</td>
<td align="left">Hepatomegaly with splenomegaly, not elsewhere classified</td>
</tr>
</tbody>
</table>
<h2>Spondylolisthesis</h2>
<h4>Implementation</h4>
~~~
At the specified date, a patient is defined as having had 'Spondylolisthesis' IF they meet the criteria for any of the following on or before the specified date. The earliest date on which the individual meets any of the following criteria on or before the specified date is defined as the first event date:
Primary care
1. 'Spondylolisthesis' diagnosis or history of diagnosis or procedure during a consultation
OR
Secondary care (ICD10)
1. ALL diagnoses of 'Spondylolisthesis' or history of diagnosis during a hospitalization
~~~
<h4>Primary care (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//primary_care/CPRD_spondylolisthesis.csv'>CPRD_spondylolisthesis.csv</a>)</h4>
<table>
<thead>
<tr>
<th>Read code</th>
<th>Read Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left">7J34112</td>
<td align="left">Buck fusion of lumbar spine for spondylolisthesis</td>
</tr>
<tr>
<td align="left">7J48500</td>
<td align="left">Spondylolisthesis operation</td>
</tr>
<tr>
<td align="left">7J48511</td>
<td align="left">Gill excision of spondylolisthesis</td>
</tr>
<tr>
<td align="left">7J48K00</td>
<td align="left">Reduction of spondylolisthesis and fusion</td>
</tr>
<tr>
<td align="left">7J48L00</td>
<td align="left">Fusion spondylolisthesis in situ</td>
</tr>
<tr>
<td align="left">N384000</td>
<td align="left">Dysplastic spondylolisthesis</td>
</tr>
<tr>
<td align="left">N384100</td>
<td align="left">Isthmic spondylolisthesis</td>
</tr>
<tr>
<td align="left">N384200</td>
<td align="left">Degenerative spondylolisthesis</td>
</tr>
<tr>
<td align="left">N384300</td>
<td align="left">Pedicular spondylolisthesis</td>
</tr>
<tr>
<td align="left">N384.00</td>
<td align="left">Acquired spondylolisthesis</td>
</tr>
<tr>
<td align="left">Zw04600</td>
<td align="left">[Q] Spondylolisthesis grade 1</td>
</tr>
<tr>
<td align="left">Zw04700</td>
<td align="left">[Q] Spondylolisthesis grade 2</td>
</tr>
<tr>
<td align="left">Zw04800</td>
<td align="left">[Q] Spondylolisthesis grade 3</td>
</tr>
<tr>
<td align="left">Zw04900</td>
<td align="left">[Q] Spondylolisthesis grade 4</td>
</tr>
</tbody>
</table>
<h4>Secondary care diagnoses (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//secondary_care/ICD_spondylolisthesis.csv'>ICD_spondylolisthesis.csv</a>)</h4>
<table>
<thead>
<tr>
<th>ICD-10 code</th>
<th>ICD-10 Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left">M43.1</td>
<td align="left">Spondylolisthesis</td>
</tr>
</tbody>
</table>
<h2>Spondylosis</h2>
<h4>Implementation</h4>
~~~
At the specified date, a patient is defined as having had 'Spondylosis' IF they meet the criteria for any of the following on or before the specified date. The earliest date on which the individual meets any of the following criteria on or before the specified date is defined as the first event date:
Primary care
1. 'Spondylosis' diagnosis or history of diagnosis during a consultation
OR
Secondary care (ICD10)
1. ALL diagnoses of 'Spondylosis' or history of diagnosis during a hospitalization
~~~
<h4>Primary care (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//primary_care/CPRD_spondylosis.csv'>CPRD_spondylosis.csv</a>)</h4>
<table>
<thead>
<tr>
<th>Read code</th>
<th>Read Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left">F163200</td>
<td align="left">Myelopathy due to spondylosis</td>
</tr>
<tr>
<td align="left">F337200</td>
<td align="left">Nerve root and plexus compressions in spondylosis</td>
</tr>
<tr>
<td align="left">N110000</td>
<td align="left">Single-level cervical spondylosis without myelopathy</td>
</tr>
<tr>
<td align="left">N110100</td>
<td align="left">Two-level cervical spondylosis without myelopathy</td>
</tr>
<tr>
<td align="left">N110200</td>
<td align="left">Multiple-level cervical spondylosis without myelopathy</td>
</tr>
<tr>
<td align="left">N110.00</td>
<td align="left">Cervical spondylosis without myelopathy</td>
</tr>
<tr>
<td align="left">N110.11</td>
<td align="left">Cervical spondylosis</td>
</tr>
<tr>
<td align="left">N110.12</td>
<td align="left">Osteoarthritis cervical spine</td>
</tr>
<tr>
<td align="left">N111000</td>
<td align="left">Single-level cervical spondylosis with myelopathy</td>
</tr>
<tr>
<td align="left">N111100</td>
<td align="left">Two-level cervical spondylosis with myelopathy</td>
</tr>
<tr>
<td align="left">N111200</td>
<td align="left">Multiple-level cervical spondylosis with myelopathy</td>
</tr>
<tr>
<td align="left">N111.00</td>
<td align="left">Cervical spondylosis with myelopathy</td>
</tr>
<tr>
<td align="left">N112000</td>
<td align="left">Single-level thoracic spondylosis without myelopathy</td>
</tr>
<tr>
<td align="left">N112100</td>
<td align="left">Two-level thoracic spondylosis without myelopathy</td>
</tr>
<tr>
<td align="left">N112200</td>
<td align="left">Multiple-level thoracic spondylosis without myelopathy</td>
</tr>
<tr>
<td align="left">N112300</td>
<td align="left">Dorsal spondylosis without myelopathy</td>
</tr>
<tr>
<td align="left">N112.00</td>
<td align="left">Thoracic spondylosis without myelopathy</td>
</tr>
<tr>
<td align="left">N112.11</td>
<td align="left">Thoracic spondylosis</td>
</tr>
<tr>
<td align="left">N113000</td>
<td align="left">Single-level thoracic spondylosis with myelopathy</td>
</tr>
<tr>
<td align="left">N113200</td>
<td align="left">Multiple-level thoracic spondylosis with myelopathy</td>
</tr>
<tr>
<td align="left">N113.00</td>
<td align="left">Thoracic spondylosis with myelopathy</td>
</tr>
<tr>
<td align="left">N114000</td>
<td align="left">Single-level lumbosacral spondylosis without myelopathy</td>
</tr>
<tr>
<td align="left">N114100</td>
<td align="left">Two-level lumbosacral spondylosis without myelopathy</td>
</tr>
<tr>
<td align="left">N114200</td>
<td align="left">Multiple-level lumbosacral spondylosis without myelopathy</td>
</tr>
<tr>
<td align="left">N114.00</td>
<td align="left">Lumbosacral spondylosis without myelopathy</td>
</tr>
<tr>
<td align="left">N114.11</td>
<td align="left">Degeneration of lumbar spine</td>
</tr>
<tr>
<td align="left">N114.12</td>
<td align="left">Lumbar spondylosis</td>
</tr>
<tr>
<td align="left">N115000</td>
<td align="left">Single-level lumbosacral spondylosis with myelopathy</td>
</tr>
<tr>
<td align="left">N115100</td>
<td align="left">Two-level lumbosacral spondylosis with myelopathy</td>
</tr>
<tr>
<td align="left">N115200</td>
<td align="left">Multiple-level lumbosacral spondylosis with myelopathy</td>
</tr>
<tr>
<td align="left">N115.00</td>
<td align="left">Lumbosacral spondylosis with myelopathy</td>
</tr>
<tr>
<td align="left">N119000</td>
<td align="left">Single-level cervical spondylosis with radiculopathy</td>
</tr>
<tr>
<td align="left">N119100</td>
<td align="left">Two-level cervical spondylosis with radiculopathy</td>
</tr>
<tr>
<td align="left">N119200</td>
<td align="left">Multiple-level cervical spondylosis with radiculopathy</td>
</tr>
<tr>
<td align="left">N119.00</td>
<td align="left">Cervical spondylosis with radiculopathy</td>
</tr>
<tr>
<td align="left">N11A.00</td>
<td align="left">Cervical spondylosis with vascular compression</td>
</tr>
<tr>
<td align="left">N11B000</td>
<td align="left">Single-level thoracic spondylosis with radiculopathy</td>
</tr>
<tr>
<td align="left">N11B100</td>
<td align="left">Two-level thoracic spondylosis with radiculopathy</td>
</tr>
<tr>
<td align="left">N11B200</td>
<td align="left">Multiple-level thoracic spondylosis with radiculopathy</td>
</tr>
<tr>
<td align="left">N11B.00</td>
<td align="left">Thoracic spondylosis with radiculopathy</td>
</tr>
<tr>
<td align="left">N11C000</td>
<td align="left">Single-level lumbosacral spondylosis with radiculopathy</td>
</tr>
<tr>
<td align="left">N11C100</td>
<td align="left">Two-level lumbosacral spondylosis with radiculopathy</td>
</tr>
<tr>
<td align="left">N11C200</td>
<td align="left">Multiple-level lumbosacral spondylosis with radiculopathy</td>
</tr>
<tr>
<td align="left">N11C.00</td>
<td align="left">Lumbosacral spondylosis with radiculopathy</td>
</tr>
<tr>
<td align="left">N11D000</td>
<td align="left">Osteoarthritis of cervical spine</td>
</tr>
<tr>
<td align="left">N11D100</td>
<td align="left">Osteoarthritis of thoracic spine</td>
</tr>
<tr>
<td align="left">N11D200</td>
<td align="left">Osteoarthritis of lumbar spine</td>
</tr>
<tr>
<td align="left">N11D300</td>
<td align="left">Osteoarthritis of spine NOS</td>
</tr>
<tr>
<td align="left">N11D.00</td>
<td align="left">Osteoarthritis of spine</td>
</tr>
<tr>
<td align="left">N11E.00</td>
<td align="left">Cervical spondylosis</td>
</tr>
<tr>
<td align="left">N11..00</td>
<td align="left">Spondylosis and allied disorders</td>
</tr>
<tr>
<td align="left">N11..11</td>
<td align="left">Arthritis of spine</td>
</tr>
<tr>
<td align="left">N11..12</td>
<td align="left">Osteoarthritis of spine</td>
</tr>
<tr>
<td align="left">N11z000</td>
<td align="left">Spondylosis without myelopathy, NOS</td>
</tr>
<tr>
<td align="left">N11z100</td>
<td align="left">Spondylosis with myelopathy, NOS</td>
</tr>
<tr>
<td align="left">N11z.00</td>
<td align="left">Spondylosis NOS</td>
</tr>
<tr>
<td align="left">N11z.11</td>
<td align="left">Osteoarthritis spine</td>
</tr>
<tr>
<td align="left">N11zz00</td>
<td align="left">Spondylosis NOS</td>
</tr>
<tr>
<td align="left">Nyu6300</td>
<td align="left">[X]Other spondylosis with radiculopathy</td>
</tr>
<tr>
<td align="left">Nyu6400</td>
<td align="left">[X]Other spondylosis</td>
</tr>
</tbody>
</table>
<h4>Secondary care diagnoses (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//secondary_care/ICD_spondylosis.csv'>ICD_spondylosis.csv</a>)</h4>
<table>
<thead>
<tr>
<th>ICD-10 code</th>
<th>ICD-10 Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left">M47.1</td>
<td align="left">Other spondylosis with myelopathy</td>
</tr>
<tr>
<td align="left">M47.2</td>
<td align="left">Other spondylosis with radiculopathy</td>
</tr>
<tr>
<td align="left">M47.8</td>
<td align="left">Other spondylosis</td>
</tr>
<tr>
<td align="left">M47.9</td>
<td align="left">Spondylosis, unspecified</td>
</tr>
</tbody>
</table>
<h2>Stable angina</h2>
<h4>Implementation</h4>
~~~
Use MODIFIED CALIBER 'Stable angina' phenotyping algorithm:
At the specified date, a patient is considered to have had 'Stable angina' IF they meet the criteria for any of the following on or before the specified date:
1. Recorded diagnosis of 'Stable angina' in primary or secondary care
2. Coronary revascularisation without un'Stable angina' or myocardial infarction in the previous 30 days
3. Primary care record of abnormal coronary angiogram or test showing evidence of myocardial ischaemia
The earliest date on which the individual meets any of the following criteria on or before the specified date is defined as the first event date. Include terms for h/o 'Stable angina':
1. Recorded diagnosis:
a) Primary care diagnosis of ischaemic chest pain: chest_pain_gprd, category 4
b) Primary care diagnosis of 'Stable angina': sa_diagnosis_gprd, category 1, category 4
c) Secondary care diagnosis of 'Stable angina': angina_hes, category 4
2. Coronary revascularisation without un'Stable angina' (phenotype_ua) or myocardial infarction (phenotype_mi) in the previous 30 days:
a) Primary care record of percutaneous coronary intervention (PCI): pci_gprd, category 2
b) Secondary care record of PCI: pci_opcs, category 2
c) Primary care record of coronary artery bypass graft (CABG): cabg_gprd, category 2
d) Secondary care record of CABG: cabg_opcs, category 2
3. Test results:
a) Primary care record of abnormal stress echocardiogram: stress_echo_gprd, category 3
b) Primary care record of abnormal invasive coronary angiogram: angio_gprd, category 3
c) Primary care record of abnormal computed tomography coronary angiogram: ct_angio_gprd, category 3
d) Primary care record of abnormal magnetic resonance coronary angiogram: mr_angio_gprd, category 3
e) Primary care record of abnormal exercise ECG: eecg_gprd, category 3
f) Primary care record of myocardial ischaemia on resting ECG: recg_gprd, category 2
g) Primary care record of abnormal myocardial perfusion scan: radio_scan_gprd, category 3
~~~
<h4>Primary care (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//primary_care/CPRD_stable_angina.csv'>CPRD_stable_angina.csv</a>)</h4>
<table>
<thead>
<tr>
<th>Read code</th>
<th>Read Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left">G33z400</td>
<td align="left">Ischaemic chest pain</td>
</tr>
<tr>
<td align="left">14A5.00</td>
<td align="left">H/O: angina pectoris</td>
</tr>
<tr>
<td align="left">14AJ.00</td>
<td align="left">H/O: Angina in last year</td>
</tr>
<tr>
<td align="left">662K.00</td>
<td align="left">Angina control</td>
</tr>
<tr>
<td align="left">662K000</td>
<td align="left">Angina control - good</td>
</tr>
<tr>
<td align="left">662K100</td>
<td align="left">Angina control - poor</td>
</tr>
<tr>
<td align="left">662K200</td>
<td align="left">Angina control - improving</td>
</tr>
<tr>
<td align="left">662Kz00</td>
<td align="left">Angina control NOS</td>
</tr>
<tr>
<td align="left">8B27.00</td>
<td align="left">Antianginal therapy</td>
</tr>
<tr>
<td align="left">G33..00</td>
<td align="left">Angina pectoris</td>
</tr>
<tr>
<td align="left">G330.00</td>
<td align="left">Angina decubitus</td>
</tr>
<tr>
<td align="left">G330000</td>
<td align="left">Nocturnal angina</td>
</tr>
<tr>
<td align="left">G330z00</td>
<td align="left">Angina decubitus NOS</td>
</tr>
<tr>
<td align="left">G33z.00</td>
<td align="left">Angina pectoris NOS</td>
</tr>
<tr>
<td align="left">G33z100</td>
<td align="left">Stenocardia</td>
</tr>
<tr>
<td align="left">G33z200</td>
<td align="left">Syncope anginosa</td>
</tr>
<tr>
<td align="left">G33z300</td>
<td align="left">Angina on effort</td>
</tr>
<tr>
<td align="left">G33z500</td>
<td align="left">Post infarct angina</td>
</tr>
<tr>
<td align="left">G33z600</td>
<td align="left">New onset angina</td>
</tr>
<tr>
<td align="left">G33z700</td>
<td align="left">Stable angina</td>
</tr>
<tr>
<td align="left">G33zz00</td>
<td align="left">Angina pectoris NOS</td>
</tr>
<tr>
<td align="left">G34y000</td>
<td align="left">Chronic coronary insufficiency</td>
</tr>
<tr>
<td align="left">Gyu3000</td>
<td align="left">[X]Other forms of angina pectoris</td>
</tr>
<tr>
<td align="left">7928.11</td>
<td align="left">Percutaneous balloon coronary angioplasty</td>
</tr>
<tr>
<td align="left">7928000</td>
<td align="left">Percut transluminal balloon angioplasty one coronary artery</td>
</tr>
<tr>
<td align="left">7928100</td>
<td align="left">Percut translum balloon angioplasty mult coronary arteries</td>
</tr>
<tr>
<td align="left">7928200</td>
<td align="left">Percut translum balloon angioplasty bypass graft coronary a</td>
</tr>
<tr>
<td align="left">7928300</td>
<td align="left">Percut translum cutting balloon angioplasty coronary artery</td>
</tr>
<tr>
<td align="left">7928y00</td>
<td align="left">Transluminal balloon angioplasty of coronary artery OS</td>
</tr>
<tr>
<td align="left">7928z00</td>
<td align="left">Transluminal balloon angioplasty of coronary artery NOS</td>
</tr>
<tr>
<td align="left">7929000</td>
<td align="left">Percutaneous transluminal laser coronary angioplasty</td>
</tr>
<tr>
<td align="left">7929300</td>
<td align="left">Rotary blade coronary angioplasty</td>
</tr>
<tr>
<td align="left">7929400</td>
<td align="left">Insertion of coronary artery stent</td>
</tr>
<tr>
<td align="left">7929500</td>
<td align="left">Insertion of drug-eluting coronary artery stent</td>
</tr>
<tr>
<td align="left">7929600</td>
<td align="left">Percutaneous transluminal atherectomy of coronary artery</td>
</tr>
<tr>
<td align="left">792B000</td>
<td align="left">Endarterectomy of coronary artery NEC</td>
</tr>
<tr>
<td align="left">793G.00</td>
<td align="left">Perc translumin balloon angioplasty stenting coronary artery</td>
</tr>
<tr>
<td align="left">793G000</td>
<td align="left">Perc translum ball angio insert 1-2 drug elut stents cor art</td>
</tr>
<tr>
<td align="left">793G100</td>
<td align="left">Perc tran ball angio ins 3 or more drug elut stents cor art</td>
</tr>
<tr>
<td align="left">793G200</td>
<td align="left">Perc translum balloon angioplasty insert 1-2 stents cor art</td>
</tr>
<tr>
<td align="left">793G300</td>
<td align="left">Percutaneous cor balloon angiop 3 more stents cor art NEC</td>
</tr>
<tr>
<td align="left">793Gy00</td>
<td align="left">OS perc translumina balloon angioplast stenting coronary art</td>
</tr>
<tr>
<td align="left">793Gz00</td>
<td align="left">Perc translum balloon angioplasty stenting coronary art NOS</td>
</tr>
<tr>
<td align="left">7A54000</td>
<td align="left">Percutaneous transluminal angioplasty of artery NEC</td>
</tr>
<tr>
<td align="left">7A54500</td>
<td align="left">Rotary blade angioplasty</td>
</tr>
<tr>
<td align="left">7A54800</td>
<td align="left">Percutaneous transluminal atherectomy</td>
</tr>
<tr>
<td align="left">7A56400</td>
<td align="left">Percutaneous transluminal balloon angioplasty of artery</td>
</tr>
<tr>
<td align="left">7A6G100</td>
<td align="left">Peroperative angioplasty</td>
</tr>
<tr>
<td align="left">7A6H300</td>
<td align="left">Prosthetic graft patch angioplasty</td>
</tr>
<tr>
<td align="left">7A6H400</td>
<td align="left">Percutaneous transluminal angioplasty of vascular graft</td>
</tr>
<tr>
<td align="left">792..11</td>
<td align="left">Coronary artery bypass graft operations</td>
</tr>
<tr>
<td align="left">7920</td>
<td align="left">Saphenous vein graft replacement of coronary artery</td>
</tr>
<tr>
<td align="left">7920.11</td>
<td align="left">Saphenous vein graft bypass of coronary artery</td>
</tr>
<tr>
<td align="left">7920000</td>
<td align="left">Saphenous vein graft replacement of one coronary artery</td>
</tr>
<tr>
<td align="left">7920100</td>
<td align="left">Saphenous vein graft replacement of two coronary arteries</td>
</tr>
<tr>
<td align="left">7920200</td>
<td align="left">Saphenous vein graft replacement of three coronary arteries</td>
</tr>
<tr>
<td align="left">7920300</td>
<td align="left">Saphenous vein graft replacement of four+ coronary arteries</td>
</tr>
<tr>
<td align="left">7920y00</td>
<td align="left">Saphenous vein graft replacement of coronary artery OS</td>
</tr>
<tr>
<td align="left">7920z00</td>
<td align="left">Saphenous vein graft replacement coronary artery NOS</td>
</tr>
<tr>
<td align="left">7921</td>
<td align="left">Other autograft replacement of coronary artery</td>
</tr>
<tr>
<td align="left">7921.11</td>
<td align="left">Other autograft bypass of coronary artery</td>
</tr>
<tr>
<td align="left">7921000</td>
<td align="left">Autograft replacement of one coronary artery NEC</td>
</tr>
<tr>
<td align="left">7921100</td>
<td align="left">Autograft replacement of two coronary arteries NEC</td>
</tr>
<tr>
<td align="left">7921200</td>
<td align="left">Autograft replacement of three coronary arteries NEC</td>
</tr>
<tr>
<td align="left">7921300</td>
<td align="left">Autograft replacement of four of more coronary arteries NEC</td>
</tr>
<tr>
<td align="left">7921y00</td>
<td align="left">Other autograft replacement of coronary artery OS</td>
</tr>
<tr>
<td align="left">7921z00</td>
<td align="left">Other autograft replacement of coronary artery NOS</td>
</tr>
<tr>
<td align="left">7922</td>
<td align="left">Allograft replacement of coronary artery</td>
</tr>
<tr>
<td align="left">7922.11</td>
<td align="left">Allograft bypass of coronary artery</td>
</tr>
<tr>
<td align="left">7922000</td>
<td align="left">Allograft replacement of one coronary artery</td>
</tr>
<tr>
<td align="left">7922100</td>
<td align="left">Allograft replacement of two coronary arteries</td>
</tr>
<tr>
<td align="left">7922200</td>
<td align="left">Allograft replacement of three coronary arteries</td>
</tr>
<tr>
<td align="left">7922300</td>
<td align="left">Allograft replacement of four or more coronary arteries</td>
</tr>
<tr>
<td align="left">7922y00</td>
<td align="left">Other specified allograft replacement of coronary artery</td>
</tr>
<tr>
<td align="left">7922z00</td>
<td align="left">Allograft replacement of coronary artery NOS</td>
</tr>
<tr>
<td align="left">7923</td>
<td align="left">Prosthetic replacement of coronary artery</td>
</tr>
<tr>
<td align="left">7923.11</td>
<td align="left">Prosthetic bypass of coronary artery</td>
</tr>
<tr>
<td align="left">7923000</td>
<td align="left">Prosthetic replacement of one coronary artery</td>
</tr>
<tr>
<td align="left">7923100</td>
<td align="left">Prosthetic replacement of two coronary arteries</td>
</tr>
<tr>
<td align="left">7923200</td>
<td align="left">Prosthetic replacement of three coronary arteries</td>
</tr>
<tr>
<td align="left">7923300</td>
<td align="left">Prosthetic replacement of four or more coronary arteries</td>
</tr>
<tr>
<td align="left">7923z00</td>
<td align="left">Prosthetic replacement of coronary artery NOS</td>
</tr>
<tr>
<td align="left">7925</td>
<td align="left">Connection of mammary artery to coronary artery</td>
</tr>
<tr>
<td align="left">7925.11</td>
<td align="left">Creation of bypass from mammary artery to coronary artery</td>
</tr>
<tr>
<td align="left">7925000</td>
<td align="left">Double anastomosis of mammary arteries to coronary arteries</td>
</tr>
<tr>
<td align="left">7925100</td>
<td align="left">Double implant of mammary arteries into coronary arteries</td>
</tr>
<tr>
<td align="left">7925300</td>
<td align="left">Single anastomosis of mammary artery to coronary artery NEC</td>
</tr>
<tr>
<td align="left">7925311</td>
<td align="left">LIMA single anastomosis</td>
</tr>
<tr>
<td align="left">7925312</td>
<td align="left">RIMA single anastomosis</td>
</tr>
<tr>
<td align="left">7925400</td>
<td align="left">Single implantation of mammary artery into coronary artery</td>
</tr>
<tr>
<td align="left">7925y00</td>
<td align="left">Connection of mammary artery to coronary artery OS</td>
</tr>
<tr>
<td align="left">7925z00</td>
<td align="left">Connection of mammary artery to coronary artery NOS</td>
</tr>
<tr>
<td align="left">7926</td>
<td align="left">Connection of other thoracic artery to coronary artery</td>
</tr>
<tr>
<td align="left">7926000</td>
<td align="left">Double anastom thoracic arteries to coronary arteries NEC</td>
</tr>
<tr>
<td align="left">7926200</td>
<td align="left">Single anastomosis of thoracic artery to coronary artery NEC</td>
</tr>
<tr>
<td align="left">7926300</td>
<td align="left">Single implantation thoracic artery into coronary artery NEC</td>
</tr>
<tr>
<td align="left">7926z00</td>
<td align="left">Connection of other thoracic artery to coronary artery NOS</td>
</tr>
<tr>
<td align="left">7927500</td>
<td align="left">Open angioplasty of coronary artery</td>
</tr>
<tr>
<td align="left">792C.00</td>
<td align="left">Other replacement of coronary artery</td>
</tr>
<tr>
<td align="left">792C000</td>
<td align="left">Replacement of coronary arteries using multiple methods</td>
</tr>
<tr>
<td align="left">792Cy00</td>
<td align="left">Other specified replacement of coronary artery</td>
</tr>
<tr>
<td align="left">792Cz00</td>
<td align="left">Replacement of coronary artery NOS</td>
</tr>
<tr>
<td align="left">792D.00</td>
<td align="left">Other bypass of coronary artery</td>
</tr>
<tr>
<td align="left">792Dy00</td>
<td align="left">Other specified other bypass of coronary artery</td>
</tr>
<tr>
<td align="left">792Dz00</td>
<td align="left">Other bypass of coronary artery NOS</td>
</tr>
<tr>
<td align="left">SP00300</td>
<td align="left">Mechanical complication of coronary bypass</td>
</tr>
<tr>
<td align="left">SP07600</td>
<td align="left">Coronary artery bypass graft occlusion</td>
</tr>
<tr>
<td align="left">5543</td>
<td align="left">Coronary arteriograph.abnormal</td>
</tr>
<tr>
<td align="left">3213100</td>
<td align="left">Exercise ECG abnormal</td>
</tr>
<tr>
<td align="left">3213111</td>
<td align="left">Positive exercise ECG test</td>
</tr>
<tr>
<td align="left">33B9500</td>
<td align="left">Exercise tolerance test abnormal</td>
</tr>
<tr>
<td align="left">322..00</td>
<td align="left">ECG: myocardial ischaemia</td>
</tr>
<tr>
<td align="left">3222</td>
<td align="left">ECG:shows myocardial ischaemia</td>
</tr>
<tr>
<td align="left">322Z.00</td>
<td align="left">ECG: myocardial ischaemia NOS</td>
</tr>
<tr>
<td align="left">32E4.00</td>
<td align="left">ECG: S-T depression</td>
</tr>
<tr>
<td align="left">32F2.00</td>
<td align="left">ECG: T wave abnormal</td>
</tr>
<tr>
<td align="left">32F3.00</td>
<td align="left">ECG: T wave flattened</td>
</tr>
<tr>
<td align="left">32F4.00</td>
<td align="left">ECG: T wave inverted</td>
</tr>
<tr>
<td align="left">5C11.00</td>
<td align="left">Radionuclide heart study abnormal</td>
</tr>
</tbody>
</table>
<h4>Secondary care diagnoses (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//secondary_care/ICD_stable_angina.csv'>ICD_stable_angina.csv</a>)</h4>
<table>
<thead>
<tr>
<th>ICD-10 code</th>
<th>ICD-10 Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left">I201</td>
<td align="left">Angina pectoris with documented spasm</td>
</tr>
<tr>
<td align="left">I208</td>
<td align="left">Other forms of angina pectoris</td>
</tr>
<tr>
<td align="left">I209</td>
<td align="left">Angina pectoris, unspecified</td>
</tr>
</tbody>
</table>
<h2>Stroke NOS</h2>
<h4>Implementation</h4>
~~~
At the specified date, a patient is defined as having had a stroke NOS IF they meet the criteria for any of the following on or before the specified date. The earliest date on which the individual meets any of the following criteria on or before the specified date is defined as the first event date:
No record for subarachnoid haemorrhage, ischaemic stroke or intracerebral haemorrhage at any time on or before the specified date
AND
Primary care
1. Stroke NOS diagnosis or history of diagnosis during a consultation
OR
Secondary care
1. ALL diagnoses of stroke NOS or stroke NOS during a hospitalization
~~~
<h4>Primary care (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//primary_care/CPRD_Stroke_NOS.csv'>CPRD_Stroke_NOS.csv</a>)</h4>
<table>
<thead>
<tr>
<th>Read code</th>
<th>Read Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left">14A7.00</td>
<td align="left">H/O: CVA/stroke</td>
</tr>
<tr>
<td align="left">14A7.11</td>
<td align="left">H/O: CVA</td>
</tr>
<tr>
<td align="left">14A7.12</td>
<td align="left">H/O: stroke</td>
</tr>
<tr>
<td align="left">14AK.00</td>
<td align="left">H/O: Stroke in last year</td>
</tr>
<tr>
<td align="left">1M4..00</td>
<td align="left">Central post-stroke pain</td>
</tr>
<tr>
<td align="left">661M700</td>
<td align="left">Stroke self-management plan agreed</td>
</tr>
<tr>
<td align="left">661N700</td>
<td align="left">Stroke self-management plan review</td>
</tr>
<tr>
<td align="left">662e.00</td>
<td align="left">Stroke/CVA annual review</td>
</tr>
<tr>
<td align="left">662e.11</td>
<td align="left">Stroke annual review</td>
</tr>
<tr>
<td align="left">662M100</td>
<td align="left">Stroke 6 month review</td>
</tr>
<tr>
<td align="left">662M200</td>
<td align="left">Stroke initial post discharge review</td>
</tr>
<tr>
<td align="left">662M.00</td>
<td align="left">Stroke monitoring</td>
</tr>
<tr>
<td align="left">7P24200</td>
<td align="left">Delivery of rehabilitation for stroke</td>
</tr>
<tr>
<td align="left">8HHM.00</td>
<td align="left">Ref to multidisciplinary stroke function improvement service</td>
</tr>
<tr>
<td align="left">8IEC.00</td>
<td align="left">Ref multidisciplinary stroke function improvement declined</td>
</tr>
<tr>
<td align="left">9h21.00</td>
<td align="left">Excepted from stroke quality indicators: Patient unsuitable</td>
</tr>
<tr>
<td align="left">9h22.00</td>
<td align="left">Excepted from stroke quality indicators: Informed dissent</td>
</tr>
<tr>
<td align="left">9h2..00</td>
<td align="left">Exception reporting: stroke quality indicators</td>
</tr>
<tr>
<td align="left">Fyu5600</td>
<td align="left">[X]Other lacunar syndromes</td>
</tr>
<tr>
<td align="left">G663.00</td>
<td align="left">Brain stem stroke syndrome</td>
</tr>
<tr>
<td align="left">G664.00</td>
<td align="left">Cerebellar stroke syndrome</td>
</tr>
<tr>
<td align="left">G665.00</td>
<td align="left">Pure motor lacunar syndrome</td>
</tr>
<tr>
<td align="left">G666.00</td>
<td align="left">Pure sensory lacunar syndrome</td>
</tr>
<tr>
<td align="left">G667.00</td>
<td align="left">Left sided CVA</td>
</tr>
<tr>
<td align="left">G668.00</td>
<td align="left">Right sided CVA</td>
</tr>
<tr>
<td align="left">G66..00</td>
<td align="left">Stroke and cerebrovascular accident unspecified</td>
</tr>
<tr>
<td align="left">G66..11</td>
<td align="left">CVA unspecified</td>
</tr>
<tr>
<td align="left">G66..12</td>
<td align="left">Stroke unspecified</td>
</tr>
<tr>
<td align="left">G66..13</td>
<td align="left">CVA - Cerebrovascular accident unspecified</td>
</tr>
<tr>
<td align="left">G68X.00</td>
<td align="left">Sequelae of stroke,not specfd as h'morrhage or infarction</td>
</tr>
<tr>
<td align="left">Gyu6C00</td>
<td align="left">[X]Sequelae of stroke,not specfd as h'morrhage or infarction</td>
</tr>
<tr>
<td align="left">L440.11</td>
<td align="left">CVA - cerebrovascular accident in the puerperium</td>
</tr>
<tr>
<td align="left">L440.12</td>
<td align="left">Stroke in the puerperium</td>
</tr>
<tr>
<td align="left">ZV12511</td>
<td align="left">[V]Personal history of stroke</td>
</tr>
<tr>
<td align="left">ZV12512</td>
<td align="left">[V]Personal history of cerebrovascular accident (CVA)</td>
</tr>
</tbody>
</table>
<h4>Secondary care diagnoses (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//secondary_care/ICD_Stroke_NOS.csv'>ICD_Stroke_NOS.csv</a>)</h4>
<table>
<thead>
<tr>
<th>ICD-10 code</th>
<th>ICD-10 Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left">G46.3</td>
<td align="left">Brain stem stroke syndrome</td>
</tr>
<tr>
<td align="left">G46.4</td>
<td align="left">Cerebellar stroke syndrome</td>
</tr>
<tr>
<td align="left">G46.5</td>
<td align="left">Pure motor lacunar syndrome</td>
</tr>
<tr>
<td align="left">G46.6</td>
<td align="left">Pure sensory lacunar syndrome</td>
</tr>
<tr>
<td align="left">G46.7</td>
<td align="left">Other lacunar syndromes</td>
</tr>
<tr>
<td align="left">G46.8</td>
<td align="left">Other vascular syndromes of brain in cerebrovascular diseases</td>
</tr>
<tr>
<td align="left">I64</td>
<td align="left">Stroke, not specified as haemorrhage or infarction</td>
</tr>
<tr>
<td align="left">I69.4</td>
<td align="left">Sequelae of stroke, not specified as haemorrhage or infarction</td>
</tr>
</tbody>
</table>
<h2>Subarachnoid haemorrhage</h2>
<h4>Implementation</h4>
~~~
At the specified date, a patient is defined as having had a 'Subarachnoid haemorrhage' IF they meet the criteria for any of the following on or before the specified date. The earliest date on which the individual meets any of the following criteria on or before the specified date is defined as the first event date:
Primary care
1. 'Subarachnoid haemorrhage' diagnosis or history of diagnosis during a consultation
OR
Secondary care
1. ALL diagnoses of 'Subarachnoid haemorrhage' or sequelae of 'Subarachnoid haemorrhage' during a hospitalization
~~~
<h4>Primary care (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//primary_care/CPRD_Subarach.csv'>CPRD_Subarach.csv</a>)</h4>
<table>
<thead>
<tr>
<th>Read code</th>
<th>Read Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left">G600.00</td>
<td align="left">Ruptured berry aneurysm</td>
</tr>
<tr>
<td align="left">G601.00</td>
<td align="left">Subarachnoid haemorrhage from carotid siphon and bifurcation</td>
</tr>
<tr>
<td align="left">G602.00</td>
<td align="left">Subarachnoid haemorrhage from middle cerebral artery</td>
</tr>
<tr>
<td align="left">G603.00</td>
<td align="left">Subarachnoid haemorrhage from anterior communicating artery</td>
</tr>
<tr>
<td align="left">G604.00</td>
<td align="left">Subarachnoid haemorrhage from posterior communicating artery</td>
</tr>
<tr>
<td align="left">G605.00</td>
<td align="left">Subarachnoid haemorrhage from basilar artery</td>
</tr>
<tr>
<td align="left">G606.00</td>
<td align="left">Subarachnoid haemorrhage from vertebral artery</td>
</tr>
<tr>
<td align="left">G60..00</td>
<td align="left">Subarachnoid haemorrhage</td>
</tr>
<tr>
<td align="left">G60X.00</td>
<td align="left">Subarachnoid haemorrh from intracranial artery, unspecif</td>
</tr>
<tr>
<td align="left">G60z.00</td>
<td align="left">Subarachnoid haemorrhage NOS</td>
</tr>
<tr>
<td align="left">G680.00</td>
<td align="left">Sequelae of subarachnoid haemorrhage</td>
</tr>
<tr>
<td align="left">Gyu6000</td>
<td align="left">[X]Subarachnoid haemorrhage from other intracranial arteries</td>
</tr>
<tr>
<td align="left">Gyu6100</td>
<td align="left">[X]Other subarachnoid haemorrhage</td>
</tr>
<tr>
<td align="left">Gyu6E00</td>
<td align="left">[X]Subarachnoid haemorrh from intracranial artery, unspecif</td>
</tr>
</tbody>
</table>
<h4>Secondary care diagnoses (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//secondary_care/ICD_Subarach.csv'>ICD_Subarach.csv</a>)</h4>
<table>
<thead>
<tr>
<th>ICD-10 code</th>
<th>ICD-10 Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left">I60</td>
<td align="left">Subarachnoid haemorrhage</td>
</tr>
<tr>
<td align="left">I69.0</td>
<td align="left">Sequelae of subarachnoid haemorrhage</td>
</tr>
</tbody>
</table>
<h2>Subdural haematoma - nontraumatic</h2>
<h4>Implementation</h4>
~~~
At the specified date, a patient is defined as having had Subdural haemorrhage (acute)(nontraumatic) IF they meet the criteria for any of the following on or before the specified date. The earliest date on which the individual meets any of the following criteria on or before the specified date is defined as the first event date:
Primary care
1. Subdural haemorrhage (acute)(nontraumatic) diagnosis or history of diagnosis during a consultation
OR
Secondary care (ICD10)
1. ALL diagnoses of Subdural haemorrhage (acute)(nontraumatic) or history of diagnosis during a hospitalization
~~~
<h4>Primary care (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//primary_care/CPRD_subdural_haem.csv'>CPRD_subdural_haem.csv</a>)</h4>
<table>
<thead>
<tr>
<th>Read code</th>
<th>Read Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left">G621.00</td>
<td align="left">Subdural haemorrhage - nontraumatic</td>
</tr>
<tr>
<td align="left">G622.00</td>
<td align="left">Subdural haematoma - nontraumatic</td>
</tr>
</tbody>
</table>
<h4>Secondary care diagnoses (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//secondary_care/ICD_subdural_haem.csv'>ICD_subdural_haem.csv</a>)</h4>
<table>
<thead>
<tr>
<th>ICD-10 code</th>
<th>ICD-10 Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left">I62.0</td>
<td align="left">Subdural haemorrhage (acute)(nontraumatic)</td>
</tr>
</tbody>
</table>
<h2>Supraventricular tachycardia</h2>
<h4>Implementation</h4>
~~~
At the specified date, a patient is defined as having had 'Supraventricular tachycardia' IF they meet the criteria for any of the following on or before the specified date. The earliest date on which the individual meets any of the following criteria on or before the specified date is defined as the first event date:
Primary care
1. 'Supraventricular tachycardia' diagnosis or history of diagnosis during a consultation
OR
Secondary care (ICD10)
1. ALL diagnoses of 'Supraventricular tachycardia' or history of diagnosis during a hospitalization
~~~
<h4>Primary care (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//primary_care/CPRD_SVT.csv'>CPRD_SVT.csv</a>)</h4>
<table>
<thead>
<tr>
<th>Read code</th>
<th>Read Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left">14AQ.00</td>
<td align="left">History of supraventricular tachycardia</td>
</tr>
<tr>
<td align="left">3274.00</td>
<td align="left">ECG: paroxysmal atrial tachy.</td>
</tr>
<tr>
<td align="left">G570000</td>
<td align="left">Paroxysmal atrial tachycardia</td>
</tr>
<tr>
<td align="left">G570100</td>
<td align="left">Paroxysmal atrioventricular tachycardia</td>
</tr>
<tr>
<td align="left">G570200</td>
<td align="left">Paroxysmal junctional tachycardia</td>
</tr>
<tr>
<td align="left">G570300</td>
<td align="left">Paroxysmal nodal tachycardia</td>
</tr>
<tr>
<td align="left">G570.00</td>
<td align="left">Paroxysmal supraventricular tachycardia</td>
</tr>
<tr>
<td align="left">G570z00</td>
<td align="left">Paroxysmal supraventricular tachycardia NOS</td>
</tr>
<tr>
<td align="left">G57y900</td>
<td align="left">Supraventricular tachycardia NOS</td>
</tr>
</tbody>
</table>
<h4>Secondary care diagnoses (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//secondary_care/ICD_SVT.csv'>ICD_SVT.csv</a>)</h4>
<table>
<thead>
<tr>
<th>ICD-10 code</th>
<th>ICD-10 Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left">I47.1</td>
<td align="left">Supraventricular tachycardia</td>
</tr>
</tbody>
</table>
<h2>Syndrome of inappropriate secretion of antidiuretic hormone</h2>
<h4>Implementation</h4>
~~~
At the specified date, a patient is defined as having had SIADH IF they meet the criteria for any of the following on or before the specified date. The earliest date on which the individual meets any of the following criteria on or before the specified date is defined as the first event date:
Secondary care (ICD10)
1. ALL diagnoses of SIADH or history of diagnosis during a hospitalization
~~~
<h4>Secondary care diagnoses (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//secondary_care/ICD_SIADH.csv'>ICD_SIADH.csv</a>)</h4>
<table>
<thead>
<tr>
<th>ICD-10 code</th>
<th>ICD-10 Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left">E22.2</td>
<td align="left">Syndrome of inappropriate secretion of antidiuretic hormone</td>
</tr>
</tbody>
</table>
<h2>Systemic sclerosis</h2>
<h4>Implementation</h4>
~~~
At the specified date, a patient is defined as having had Systemic sclerosis IF they meet the criteria for any of the following on or before the specified date. The earliest date on which the individual meets any of the following criteria on or before the specified date is defined as the first event date:
Primary care
1. Systemic sclerosis diagnosis or history of diagnosis during a consultation
OR
Secondary care (ICD10)
1. ALL diagnoses of Systemic sclerosis or history of diagnosis during a hospitalization
~~~
<h4>Primary care (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//primary_care/CPRD_sys_sclerosis.csv'>CPRD_sys_sclerosis.csv</a>)</h4>
<table>
<thead>
<tr>
<th>Read code</th>
<th>Read Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left">F396600</td>
<td align="left">Myopathy due to scleroderma</td>
</tr>
<tr>
<td align="left">H572.00</td>
<td align="left">Lung disease with systemic sclerosis</td>
</tr>
<tr>
<td align="left">K0H..00</td>
<td align="left">Acute scleroderma renal crisis</td>
</tr>
<tr>
<td align="left">K0J0.00</td>
<td align="left">Renal involvement in scleroderma</td>
</tr>
<tr>
<td align="left">N001000</td>
<td align="left">Progressive systemic sclerosis</td>
</tr>
<tr>
<td align="left">N001100</td>
<td align="left">CREST syndrome</td>
</tr>
<tr>
<td align="left">N001200</td>
<td align="left">Systemic sclerosis induced by drugs and chemicals</td>
</tr>
<tr>
<td align="left">N001.00</td>
<td align="left">Scleroderma</td>
</tr>
<tr>
<td align="left">N001.11</td>
<td align="left">Acrosclerosis</td>
</tr>
<tr>
<td align="left">N001.12</td>
<td align="left">Systemic sclerosis</td>
</tr>
<tr>
<td align="left">Nyu4500</td>
<td align="left">[X]Other forms of systemic sclerosis</td>
</tr>
</tbody>
</table>
<h4>Secondary care diagnoses (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//secondary_care/ICD_sys_sclerosis.csv'>ICD_sys_sclerosis.csv</a>)</h4>
<table>
<thead>
<tr>
<th>ICD-10 code</th>
<th>ICD-10 Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left">M34</td>
<td align="left">Systemic sclerosis</td>
</tr>
</tbody>
</table>
<h2>Thalassaemia</h2>
<h4>Implementation</h4>
~~~
At the specified date, a patient is defined as having had 'Thalassaemia' IF they meet the criteria for any of the following on or before the specified date. The earliest date on which the individual meets any of the following criteria on or before the specified date is defined as the first event date:
Primary care
1. 'Thalassaemia' diagnosis or history of diagnosis during a consultation
OR
Secondary care (ICD10)
1. ALL diagnoses of 'Thalassaemia' or history of diagnosis during a hospitalization
~~~
<h4>Primary care (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//primary_care/CPRD_thala.csv'>CPRD_thala.csv</a>)</h4>
<table>
<thead>
<tr>
<th>Read code</th>
<th>Read Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left">D104000</td>
<td align="left">Thalassaemia major NEC</td>
</tr>
<tr>
<td align="left">D104011</td>
<td align="left">Thalassaemia major - Cooley's anaemia</td>
</tr>
<tr>
<td align="left">D104200</td>
<td align="left">Thalassaemia with haemoglobin S disease</td>
</tr>
<tr>
<td align="left">D104211</td>
<td align="left">Sickle-cell thalassaemia</td>
</tr>
<tr>
<td align="left">D104300</td>
<td align="left">Alpha thalassaemia</td>
</tr>
<tr>
<td align="left">D104311</td>
<td align="left">Homozygous alpha thalassaemia</td>
</tr>
<tr>
<td align="left">D104600</td>
<td align="left">Beta intermedia thalassaemia</td>
</tr>
<tr>
<td align="left">D104700</td>
<td align="left">Beta major thalassaemia</td>
</tr>
<tr>
<td align="left">D104811</td>
<td align="left">Beta thalassaemia</td>
</tr>
<tr>
<td align="left">D104900</td>
<td align="left">Delta-beta thalassaemia</td>
</tr>
<tr>
<td align="left">D104A00</td>
<td align="left">Hereditary leptocytosis</td>
</tr>
<tr>
<td align="left">D104.00</td>
<td align="left">Thalassaemia</td>
</tr>
<tr>
<td align="left">D104.12</td>
<td align="left">Mediterranean anaemia</td>
</tr>
<tr>
<td align="left">D104z00</td>
<td align="left">Thalassaemia NOS</td>
</tr>
<tr>
<td align="left">D104z11</td>
<td align="left">Mediterranean anaemia</td>
</tr>
<tr>
<td align="left">Dyu1100</td>
<td align="left">[X]Other thalassaemias</td>
</tr>
</tbody>
</table>
<h4>Secondary care diagnoses (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//secondary_care/ICD_thala.csv'>ICD_thala.csv</a>)</h4>
<table>
<thead>
<tr>
<th>ICD-10 code</th>
<th>ICD-10 Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left">D56.0</td>
<td align="left">Alpha thalassaemia</td>
</tr>
<tr>
<td align="left">D56.1</td>
<td align="left">Beta thalassaemia</td>
</tr>
<tr>
<td align="left">D56.2</td>
<td align="left">Delta-beta thalassaemia</td>
</tr>
<tr>
<td align="left">D56.8</td>
<td align="left">Other thalassaemias</td>
</tr>
<tr>
<td align="left">D56.9</td>
<td align="left">Thalassaemia, unspecified</td>
</tr>
</tbody>
</table>
<h2>Thalassaemia trait</h2>
<h4>Implementation</h4>
~~~
At the specified date, a patient is defined as having had 'Thalassaemia trait' IF they meet the criteria for any of the following on or before the specified date. The earliest date on which the individual meets any of the following criteria on or before the specified date is defined as the first event date:
Primary care
1. 'Thalassaemia trait' diagnosis or history of diagnosis during a consultation
OR
Secondary care (ICD10)
1. ALL diagnoses of 'Thalassaemia trait' or history of diagnosis during a hospitalization
~~~
<h4>Primary care (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//primary_care/CPRD_thal_trait.csv'>CPRD_thal_trait.csv</a>)</h4>
<table>
<thead>
<tr>
<th>Read code</th>
<th>Read Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left">D104100</td>
<td align="left">Thalassaemia minor NEC</td>
</tr>
<tr>
<td align="left">D104400</td>
<td align="left">Alpha trait thalassaemia</td>
</tr>
<tr>
<td align="left">D104500</td>
<td align="left">Beta trait thalassaemia</td>
</tr>
<tr>
<td align="left">D104800</td>
<td align="left">Beta minor thalassaemia</td>
</tr>
</tbody>
</table>
<h4>Secondary care diagnoses (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//secondary_care/ICD_thal_trait.csv'>ICD_thal_trait.csv</a>)</h4>
<table>
<thead>
<tr>
<th>ICD-10 code</th>
<th>ICD-10 Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left">D56.3</td>
<td align="left">Thalassaemia trait</td>
</tr>
</tbody>
</table>
<h2>Thrombophilia</h2>
<h4>Implementation</h4>
~~~
At the specified date, a patient is defined as having had 'Thrombophilia' IF they meet the criteria for any of the following on or before the specified date. The earliest date on which the individual meets any of the following criteria on or before the specified date is defined as the first event date:
Primary care
1. 'Thrombophilia' diagnosis or history of diagnosis during a consultation
OR
Secondary care (ICD10)
1. ALL diagnoses of 'Thrombophilia' or history of diagnosis during a hospitalization
~~~
<h4>Primary care (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//primary_care/CPRD_thrombophilia.csv'>CPRD_thrombophilia.csv</a>)</h4>
<table>
<thead>
<tr>
<th>Read code</th>
<th>Read Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left">42jH.00</td>
<td align="left">Activated protein C with factor V deficient plasma</td>
</tr>
<tr>
<td align="left">42Qc.00</td>
<td align="left">Plasma activated protein C resistance</td>
</tr>
<tr>
<td align="left">42Qe.00</td>
<td align="left">Factor V Leiden genotype</td>
</tr>
<tr>
<td align="left">43GE100</td>
<td align="left">Lupus anticoagulant positive</td>
</tr>
<tr>
<td align="left">D303700</td>
<td align="left">Factor V Leiden mutation</td>
</tr>
<tr>
<td align="left">D303800</td>
<td align="left">Homozygous factor V Leiden mutation</td>
</tr>
<tr>
<td align="left">D303900</td>
<td align="left">Heterozygous factor V Leiden mutation</td>
</tr>
<tr>
<td align="left">D309.00</td>
<td align="left">Protein S deficiency</td>
</tr>
<tr>
<td align="left">D30A000</td>
<td align="left">Primary thrombophilia</td>
</tr>
<tr>
<td align="left">D30A.00</td>
<td align="left">Thrombophilia</td>
</tr>
<tr>
<td align="left">D30B.00</td>
<td align="left">Protein C deficiency</td>
</tr>
<tr>
<td align="left">N006.00</td>
<td align="left">Antiphospholipid syndrome</td>
</tr>
</tbody>
</table>
<h4>Secondary care diagnoses (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//secondary_care/ICD_thrombophilia.csv'>ICD_thrombophilia.csv</a>)</h4>
<table>
<thead>
<tr>
<th>ICD-10 code</th>
<th>ICD-10 Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left">D68.5</td>
<td align="left">Primary Thrombophilia</td>
</tr>
<tr>
<td align="left">D68.6</td>
<td align="left">Other Thrombophilia</td>
</tr>
</tbody>
</table>
<h2>Tinnitus</h2>
<h4>Implementation</h4>
~~~
At the specified date, a patient is defined as having had 'Tinnitus' IF they meet the criteria for any of the following on or before the specified date. The earliest date on which the individual meets any of the following criteria on or before the specified date is defined as the first event date:
Primary care
1. 'Tinnitus' diagnosis or history of diagnosis during a consultation
OR
Secondary care (ICD10)
1. ALL diagnoses of 'Tinnitus' or history of diagnosis during a hospitalization
~~~
<h4>Primary care (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//primary_care/CPRD_tinnitus.csv'>CPRD_tinnitus.csv</a>)</h4>
<table>
<thead>
<tr>
<th>Read code</th>
<th>Read Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left">1C2..00</td>
<td align="left">Tinnitus symptoms</td>
</tr>
<tr>
<td align="left">1C23.00</td>
<td align="left">Ringing in ear</td>
</tr>
<tr>
<td align="left">1C24.00</td>
<td align="left">Hissing in ear</td>
</tr>
<tr>
<td align="left">1C2Z.00</td>
<td align="left">Tinnitus symptom NOS</td>
</tr>
<tr>
<td align="left">F583000</td>
<td align="left">Unspecified tinnitus</td>
</tr>
<tr>
<td align="left">F583100</td>
<td align="left">Subjective tinnitus</td>
</tr>
<tr>
<td align="left">F583200</td>
<td align="left">Objective tinnitus</td>
</tr>
<tr>
<td align="left">F583.00</td>
<td align="left">Tinnitus</td>
</tr>
<tr>
<td align="left">F583z00</td>
<td align="left">Tinnitus NOS</td>
</tr>
<tr>
<td align="left">Z911200</td>
<td align="left">Fit tinnitus masker</td>
</tr>
<tr>
<td align="left">ZEB..00</td>
<td align="left">Observation of tinnitus</td>
</tr>
</tbody>
</table>
<h4>Secondary care diagnoses (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//secondary_care/ICD_tinnitus.csv'>ICD_tinnitus.csv</a>)</h4>
<table>
<thead>
<tr>
<th>ICD-10 code</th>
<th>ICD-10 Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left">H93.1</td>
<td align="left">Tinnitus</td>
</tr>
</tbody>
</table>
<h2>Transient ischaemic attack</h2>
<h4>Implementation</h4>
~~~
At the specified date, a patient is defined as having had a 'Transient ischaemic attack' IF they meet the criteria for any of the following on or before the specified date. The earliest date on which the individual meets any of the following criteria on or before the specified date is defined as the first event date:
Primary care
1. 'Transient ischaemic attack' diagnosis or history of diagnosis during a consultation
OR
Secondary care
1. ALL diagnoses of 'Transient ischaemic attack' or history of diagnosis during a hospitalization
~~~
<h4>Primary care (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//primary_care/CPRD_TIA.csv'>CPRD_TIA.csv</a>)</h4>
<table>
<thead>
<tr>
<th>Read code</th>
<th>Read Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left">14AB000</td>
<td align="left">H/O amaurosis fugax</td>
</tr>
<tr>
<td align="left">14AB.00</td>
<td align="left">H/O: TIA</td>
</tr>
<tr>
<td align="left">1B1S.00</td>
<td align="left">Transient global amnesia</td>
</tr>
<tr>
<td align="left">8CRB.00</td>
<td align="left">Transient ischaemic attack clinical management plan</td>
</tr>
<tr>
<td align="left">F423600</td>
<td align="left">Amaurosis fugax</td>
</tr>
<tr>
<td align="left">Fyu5500</td>
<td align="left">[X]Other transnt cerebral ischaemic attacks+related syndroms</td>
</tr>
<tr>
<td align="left">G650.11</td>
<td align="left">Insufficiency - basilar artery</td>
</tr>
<tr>
<td align="left">G655.00</td>
<td align="left">Transient global amnesia</td>
</tr>
<tr>
<td align="left">G656.00</td>
<td align="left">Vertebrobasilar insufficiency</td>
</tr>
<tr>
<td align="left">G657.00</td>
<td align="left">Carotid territory transient ischaemic attack</td>
</tr>
<tr>
<td align="left">G65..00</td>
<td align="left">Transient cerebral ischaemia</td>
</tr>
<tr>
<td align="left">G65..12</td>
<td align="left">Transient ischaemic attack</td>
</tr>
<tr>
<td align="left">G65..13</td>
<td align="left">Vertebro-basilar insufficiency</td>
</tr>
<tr>
<td align="left">G65y.00</td>
<td align="left">Other transient cerebral ischaemia</td>
</tr>
<tr>
<td align="left">G65z100</td>
<td align="left">Intermittent cerebral ischaemia</td>
</tr>
<tr>
<td align="left">G65z.00</td>
<td align="left">Transient cerebral ischaemia NOS</td>
</tr>
<tr>
<td align="left">G65zz00</td>
<td align="left">Transient cerebral ischaemia NOS</td>
</tr>
<tr>
<td align="left">Z7CE700</td>
<td align="left">Transient global amnesia</td>
</tr>
<tr>
<td align="left">Z7CE711</td>
<td align="left">TGA - Transient global amnesia</td>
</tr>
<tr>
<td align="left">ZV12D00</td>
<td align="left">[V]Personal history of transient ischaemic attack</td>
</tr>
</tbody>
</table>
<h4>Secondary care diagnoses (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//secondary_care/ICD_TIA.csv'>ICD_TIA.csv</a>)</h4>
<table>
<thead>
<tr>
<th>ICD-10 code</th>
<th>ICD-10 Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left">G45.0</td>
<td align="left">Vertebro-basilar artery syndrome</td>
</tr>
<tr>
<td align="left">G45.1</td>
<td align="left">Carotid artery syndrome (hemispheric)</td>
</tr>
<tr>
<td align="left">G45.2</td>
<td align="left">Multiple and bilateral precerebral artery syndromes</td>
</tr>
<tr>
<td align="left">G45.3</td>
<td align="left">Amaurosis fugax</td>
</tr>
<tr>
<td align="left">G45.4</td>
<td align="left">Transient global amnesia</td>
</tr>
<tr>
<td align="left">G45.8</td>
<td align="left">Other transient cerebral ischaemic attacks and related syndromes</td>
</tr>
<tr>
<td align="left">G45.9</td>
<td align="left">Transient cerebral ischaemic attack, unspecified</td>
</tr>
<tr>
<td align="left">G46.0</td>
<td align="left">Middle cerebral artery syndrome</td>
</tr>
<tr>
<td align="left">G46.1</td>
<td align="left">Anterior cerebral artery syndrome</td>
</tr>
<tr>
<td align="left">G46.2</td>
<td align="left">Posterior cerebral artery syndrome</td>
</tr>
<tr>
<td align="left">I65</td>
<td align="left">Occlusion and stenosis of precerebral arteries, not resulting in cerebral infarction</td>
</tr>
<tr>
<td align="left">I66</td>
<td align="left">Occlusion and stenosis of cerebral arteries, not resulting in cerebral infarction</td>
</tr>
</tbody>
</table>
<h2>Trifascicular block</h2>
<h4>Implementation</h4>
~~~
At the specified date, a patient is defined as having had 'Trifascicular block' IF they meet the criteria for any of the following on or before the specified date. The earliest date on which the individual meets any of the following criteria on or before the specified date is defined as the first event date:
Primary care
1. 'Trifascicular block' diagnosis or history of diagnosis during a consultation
OR
Secondary care (ICD10)
1. ALL diagnoses of 'Trifascicular block' or history of diagnosis during a hospitalization
~~~
<h4>Primary care (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//primary_care/CPRD_trifasc_block.csv'>CPRD_trifasc_block.csv</a>)</h4>
<table>
<thead>
<tr>
<th>Read code</th>
<th>Read Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left">329B.00</td>
<td align="left">ECG: trifascicular block</td>
</tr>
<tr>
<td align="left">G565400</td>
<td align="left">Trifascicular block</td>
</tr>
</tbody>
</table>
<h4>Secondary care diagnoses (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//secondary_care/ICD_trifasc_block.csv'>ICD_trifasc_block.csv</a>)</h4>
<table>
<thead>
<tr>
<th>ICD-10 code</th>
<th>ICD-10 Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left">I45.3</td>
<td align="left">Trifascicular block</td>
</tr>
</tbody>
</table>
<h2>Trigeminal neuralgia</h2>
<h4>Implementation</h4>
~~~
At the specified date, a patient is defined as having had 'Trigeminal neuralgia' IF they meet the criteria for any of the following on or before the specified date. The earliest date on which the individual meets any of the following criteria on or before the specified date is defined as the first event date:
Primary care
1. 'Trigeminal neuralgia' diagnosis or history of diagnosis during a consultation
OR
Secondary care
1. ALL diagnoses of 'Trigeminal neuralgia' or history of diagnosis during a hospitalization
~~~
<h4>Primary care (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//primary_care/CPRD_trigem_neur.csv'>CPRD_trigem_neur.csv</a>)</h4>
<table>
<thead>
<tr>
<th>Read code</th>
<th>Read Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="right">1475</td>
<td align="left">H/O: trigeminal neuralgia</td>
</tr>
<tr>
<td align="left">A531200</td>
<td align="left">Postherpetic trigeminal neuralgia</td>
</tr>
<tr>
<td align="left">F300.00</td>
<td align="left">Post-herpetic trigeminal neuralgia</td>
</tr>
<tr>
<td align="left">F301000</td>
<td align="left">Tic douloureux</td>
</tr>
<tr>
<td align="left">F301.00</td>
<td align="left">Other specified trigeminal neuralgia</td>
</tr>
<tr>
<td align="left">F301z00</td>
<td align="left">Trigeminal neuralgia NOS</td>
</tr>
</tbody>
</table>
<h4>Secondary care diagnoses (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//secondary_care/ICD_trigem_neur.csv'>ICD_trigem_neur.csv</a>)</h4>
<table>
<thead>
<tr>
<th>ICD-10 code</th>
<th>ICD-10 Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left">G50.0</td>
<td align="left">Trigeminal neuralgia</td>
</tr>
</tbody>
</table>
<h2>Tuberculosis</h2>
<h4>Implementation</h4>
~~~
At the specified date, a patient is defined as having had 'Tuberculosis' IF they meet the criteria for any of the following on or before the specified date. The earliest date on which the individual meets any of the following criteria on or before the specified date is defined as the first event date:
Primary care
1. 'Tuberculosis' diagnosis or history of diagnosis during a consultation
OR
Secondary care
1. ALL diagnoses of 'Tuberculosis' or history of diagnosis during a hospitalization
~~~
<h4>Primary care (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//primary_care/CPRD_TB.csv'>CPRD_TB.csv</a>)</h4>
<table>
<thead>
<tr>
<th>Read code</th>
<th>Read Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="right">1411</td>
<td align="left">H/O: tuberculosis</td>
</tr>
<tr>
<td align="left">14P9.00</td>
<td align="left">History of tuberculosis drug therapy</td>
</tr>
<tr>
<td align="left">65V9.00</td>
<td align="left">Notification of tuberculosis</td>
</tr>
<tr>
<td align="left">65V9.11</td>
<td align="left">TB - tuberculosis notification</td>
</tr>
<tr>
<td align="left">65Y1.00</td>
<td align="left">On tuberculosis chemoprophylaxis</td>
</tr>
<tr>
<td align="left">65Y2.00</td>
<td align="left">Streptomycin resistant tuberculosis</td>
</tr>
<tr>
<td align="left">65Y5.00</td>
<td align="left">Isoniazid resistant tuberculosis</td>
</tr>
<tr>
<td align="left">65Y8.00</td>
<td align="left">Ciprofloxacin resistant tuberculosis</td>
</tr>
<tr>
<td align="left">65Y9.00</td>
<td align="left">Inactive tuberculosis</td>
</tr>
<tr>
<td align="left">65Y9.11</td>
<td align="left">Latent tuberculosis</td>
</tr>
<tr>
<td align="left">8BAD100</td>
<td align="left">TB chemotherapy</td>
</tr>
<tr>
<td align="left">A100.00</td>
<td align="left">Primary tuberculous complex</td>
</tr>
<tr>
<td align="left">A101.00</td>
<td align="left">Tuberculous pleurisy in primary progressive tuberculosis</td>
</tr>
<tr>
<td align="left">A10..00</td>
<td align="left">Primary tuberculous infection</td>
</tr>
<tr>
<td align="left">A10y.00</td>
<td align="left">Other primary progressive tuberculosis</td>
</tr>
<tr>
<td align="left">A10z.00</td>
<td align="left">Primary tuberculous infection NOS</td>
</tr>
<tr>
<td align="left">A110.00</td>
<td align="left">Infiltrative lung tuberculosis</td>
</tr>
<tr>
<td align="left">A111.00</td>
<td align="left">Nodular lung tuberculosis</td>
</tr>
<tr>
<td align="left">A112.00</td>
<td align="left">Tuberculosis of lung with cavitation</td>
</tr>
<tr>
<td align="left">A113.00</td>
<td align="left">Tuberculosis of bronchus</td>
</tr>
<tr>
<td align="left">A114.00</td>
<td align="left">Tuberculous fibrosis of lung</td>
</tr>
<tr>
<td align="left">A115.00</td>
<td align="left">Tuberculous bronchiectasis</td>
</tr>
<tr>
<td align="left">A116.00</td>
<td align="left">Tuberculous pneumonia</td>
</tr>
<tr>
<td align="left">A117.00</td>
<td align="left">Tuberculous pneumothorax</td>
</tr>
<tr>
<td align="left">A11..00</td>
<td align="left">Pulmonary tuberculosis</td>
</tr>
<tr>
<td align="left">A11..11</td>
<td align="left">Lung tuberculosis</td>
</tr>
<tr>
<td align="left">A11y.00</td>
<td align="left">Other specified pulmonary tuberculosis</td>
</tr>
<tr>
<td align="left">A11z.00</td>
<td align="left">Pulmonary tuberculosis NOS</td>
</tr>
<tr>
<td align="left">A120000</td>
<td align="left">Tuberculosis of pleura</td>
</tr>
<tr>
<td align="left">A120100</td>
<td align="left">Tuberculous empyema</td>
</tr>
<tr>
<td align="left">A120200</td>
<td align="left">Tuberculous hydrothorax</td>
</tr>
<tr>
<td align="left">A120.00</td>
<td align="left">Tuberculous pleurisy</td>
</tr>
<tr>
<td align="left">A120z00</td>
<td align="left">Tuberculous pleurisy NOS</td>
</tr>
<tr>
<td align="left">A121000</td>
<td align="left">Tuberculosis of hilar lymph nodes</td>
</tr>
<tr>
<td align="left">A121100</td>
<td align="left">Tuberculosis of mediastinal lymph nodes</td>
</tr>
<tr>
<td align="left">A121200</td>
<td align="left">Tuberculosis of tracheobronchial lymph nodes</td>
</tr>
<tr>
<td align="left">A121.00</td>
<td align="left">Tuberculosis of intrathoracic lymph nodes</td>
</tr>
<tr>
<td align="left">A121z00</td>
<td align="left">Tuberculosis of intrathoracic lymph nodes NOS</td>
</tr>
<tr>
<td align="left">A122000</td>
<td align="left">Isolated tracheal tuberculosis</td>
</tr>
<tr>
<td align="left">A122100</td>
<td align="left">Isolated bronchial tuberculosis</td>
</tr>
<tr>
<td align="left">A122.00</td>
<td align="left">Isolated tracheal or bronchial tuberculosis</td>
</tr>
<tr>
<td align="left">A122z00</td>
<td align="left">Isolated tracheal or bronchial tuberculosis NOS</td>
</tr>
<tr>
<td align="left">A123.00</td>
<td align="left">Tuberculous laryngitis</td>
</tr>
<tr>
<td align="left">A124000</td>
<td align="left">TB lung confirm sputum microscopy with or without culture</td>
</tr>
<tr>
<td align="left">A124100</td>
<td align="left">Tuberculosis of lung, confirmed by culture only</td>
</tr>
<tr>
<td align="left">A124200</td>
<td align="left">Tuberculosis of lung, confirmed histologically</td>
</tr>
<tr>
<td align="left">A124300</td>
<td align="left">Tuberculosis of lung, confirmed by unspecified means</td>
</tr>
<tr>
<td align="left">A124400</td>
<td align="left">TB intrathoracic lymph nodes confirm bact histologically</td>
</tr>
<tr>
<td align="left">A124500</td>
<td align="left">Tuberculosis of larynx, trachea & bronchus conf bact/hist'y</td>
</tr>
<tr>
<td align="left">A124600</td>
<td align="left">Tuberculous pleurisy, conf bacteriologically/histologically</td>
</tr>
<tr>
<td align="left">A124700</td>
<td align="left">Primary respiratory TB confirm bact and histologically</td>
</tr>
<tr>
<td align="left">A124.00</td>
<td align="left">Resp TB bacteriologically and histologically confirmed</td>
</tr>
<tr>
<td align="left">A125000</td>
<td align="left">Tuberculosis of lung, bacteriologically & histolog'y neg</td>
</tr>
<tr>
<td align="left">A125100</td>
<td align="left">Tuberculosis lung bact and histological examin not done</td>
</tr>
<tr>
<td align="left">A125200</td>
<td align="left">Prim respiratory TB without mention of bact or hist confirm</td>
</tr>
<tr>
<td align="left">A125.00</td>
<td align="left">Respiratory TB not confirmed bact or histologically</td>
</tr>
<tr>
<td align="left">A125X00</td>
<td align="left">Resp TB unspcf,w'out mention/bacterial or histol confrmtn</td>
</tr>
<tr>
<td align="left">A12..00</td>
<td align="left">Other respiratory tuberculosis</td>
</tr>
<tr>
<td align="left">A12y000</td>
<td align="left">Tuberculosis of mediastinum</td>
</tr>
<tr>
<td align="left">A12y100</td>
<td align="left">Tuberculosis of nasopharynx</td>
</tr>
<tr>
<td align="left">A12y200</td>
<td align="left">Tuberculosis of nasal septum</td>
</tr>
<tr>
<td align="left">A12y300</td>
<td align="left">Tuberculosis of nasal sinus</td>
</tr>
<tr>
<td align="left">A12y.00</td>
<td align="left">Other specified respiratory tuberculosis</td>
</tr>
<tr>
<td align="left">A12yz00</td>
<td align="left">Other specified respiratory tuberculosis NOS</td>
</tr>
<tr>
<td align="left">A130000</td>
<td align="left">Tuberculosis of cerebral meninges</td>
</tr>
<tr>
<td align="left">A130100</td>
<td align="left">Tuberculosis of spinal meninges</td>
</tr>
<tr>
<td align="left">A130300</td>
<td align="left">Tuberculous meningoencephalitis</td>
</tr>
<tr>
<td align="left">A130.00</td>
<td align="left">Tuberculous meningitis</td>
</tr>
<tr>
<td align="left">A130z00</td>
<td align="left">Tuberculous meningitis NOS</td>
</tr>
<tr>
<td align="left">A131.00</td>
<td align="left">Tuberculoma of meninges</td>
</tr>
<tr>
<td align="left">A132.00</td>
<td align="left">Tuberculoma of brain</td>
</tr>
<tr>
<td align="left">A133.00</td>
<td align="left">Tuberculous abscess of brain</td>
</tr>
<tr>
<td align="left">A134.00</td>
<td align="left">Tuberculoma of spinal cord</td>
</tr>
<tr>
<td align="left">A135.00</td>
<td align="left">Tuberculous abscess of spinal cord</td>
</tr>
<tr>
<td align="left">A136000</td>
<td align="left">Tuberculous encephalitis</td>
</tr>
<tr>
<td align="left">A136100</td>
<td align="left">Tuberculous myelitis</td>
</tr>
<tr>
<td align="left">A136.00</td>
<td align="left">Tuberculous encephalitis or myelitis</td>
</tr>
<tr>
<td align="left">A136z00</td>
<td align="left">Tuberculous encephalitis or myelitis NOS</td>
</tr>
<tr>
<td align="left">A13..00</td>
<td align="left">Tuberculosis of meninges and central nervous system</td>
</tr>
<tr>
<td align="left">A13y.00</td>
<td align="left">Other specified tuberculosis of central nervous system</td>
</tr>
<tr>
<td align="left">A13z.00</td>
<td align="left">Tuberculosis of central nervous system NOS</td>
</tr>
<tr>
<td align="left">A140.00</td>
<td align="left">Tuberculous peritonitis</td>
</tr>
<tr>
<td align="left">A14..00</td>
<td align="left">Tuberculosis of intestines, peritoneum and mesenteric glands</td>
</tr>
<tr>
<td align="left">A14y100</td>
<td align="left">Tuberculosis of large intestine</td>
</tr>
<tr>
<td align="left">A14y200</td>
<td align="left">Tuberculosis of small intestine</td>
</tr>
<tr>
<td align="left">A14y300</td>
<td align="left">Tuberculosis of mesenteric lymph glands</td>
</tr>
<tr>
<td align="left">A14y400</td>
<td align="left">Tuberculosis of rectum</td>
</tr>
<tr>
<td align="left">A14y500</td>
<td align="left">Tuberculosis of retroperitoneal lymph nodes</td>
</tr>
<tr>
<td align="left">A14y.00</td>
<td align="left">Other gastrointestinal tract tuberculosis</td>
</tr>
<tr>
<td align="left">A14yz00</td>
<td align="left">Other gastrointestinal tract tuberculosis NOS</td>
</tr>
<tr>
<td align="left">A14z.00</td>
<td align="left">Tuberculosis of gastrointestinal tract NOS</td>
</tr>
<tr>
<td align="left">A150.00</td>
<td align="left">Tuberculosis of vertebral column - Pott's</td>
</tr>
<tr>
<td align="left">A151.00</td>
<td align="left">Tuberculosis of hip</td>
</tr>
<tr>
<td align="left">A152.00</td>
<td align="left">Tuberculosis of knee</td>
</tr>
<tr>
<td align="left">A153.00</td>
<td align="left">Tuberculosis limb bones - Tuberculous dactylitis</td>
</tr>
<tr>
<td align="left">A154.00</td>
<td align="left">Tuberculous mastoiditis</td>
</tr>
<tr>
<td align="left">A15..00</td>
<td align="left">Tuberculosis of bones and joints</td>
</tr>
<tr>
<td align="left">A15..11</td>
<td align="left">Tuberculous osteomylelytis</td>
</tr>
<tr>
<td align="left">A15..12</td>
<td align="left">Tuberculous arthritis</td>
</tr>
<tr>
<td align="left">A15..13</td>
<td align="left">Tuberculous synovitis</td>
</tr>
<tr>
<td align="left">A15x.00</td>
<td align="left">Tuberculosis of other specified bones</td>
</tr>
<tr>
<td align="left">A15y.00</td>
<td align="left">Tuberculosis of other specified joint</td>
</tr>
<tr>
<td align="left">A15z.00</td>
<td align="left">Tuberculosis of bones or joints NOS</td>
</tr>
<tr>
<td align="left">A160000</td>
<td align="left">Tuberculous nephropathy</td>
</tr>
<tr>
<td align="left">A160100</td>
<td align="left">Tuberculous pyelitis</td>
</tr>
<tr>
<td align="left">A160200</td>
<td align="left">Tuberculous pyelonephritis</td>
</tr>
<tr>
<td align="left">A160.00</td>
<td align="left">Tuberculosis of kidney</td>
</tr>
<tr>
<td align="left">A160.11</td>
<td align="left">Renal tuberculosis</td>
</tr>
<tr>
<td align="left">A160z00</td>
<td align="left">Tuberculosis of kidney NOS</td>
</tr>
<tr>
<td align="left">A161.00</td>
<td align="left">Tuberculosis of bladder</td>
</tr>
<tr>
<td align="left">A162.00</td>
<td align="left">Tuberculosis of ureter</td>
</tr>
<tr>
<td align="left">A163.00</td>
<td align="left">Tuberculosis of other urinary organs</td>
</tr>
<tr>
<td align="left">A164.00</td>
<td align="left">Tuberculosis of epididymis</td>
</tr>
<tr>
<td align="left">A165000</td>
<td align="left">Tuberculosis of prostate</td>
</tr>
<tr>
<td align="left">A165100</td>
<td align="left">Tuberculosis seminal vesicle</td>
</tr>
<tr>
<td align="left">A165200</td>
<td align="left">Tuberculosis of testis</td>
</tr>
<tr>
<td align="left">A165.00</td>
<td align="left">Tuberculosis of other male genital organs</td>
</tr>
<tr>
<td align="left">A165z00</td>
<td align="left">Tuberculosis of other male genital organs NOS</td>
</tr>
<tr>
<td align="left">A166000</td>
<td align="left">Tuberculous oophoritis</td>
</tr>
<tr>
<td align="left">A166100</td>
<td align="left">Tuberculous salpingitis</td>
</tr>
<tr>
<td align="left">A166111</td>
<td align="left">Fallopian tube tuberculosis</td>
</tr>
<tr>
<td align="left">A166.00</td>
<td align="left">Tuberculous oophoritis or salpingitis</td>
</tr>
<tr>
<td align="left">A166z00</td>
<td align="left">Tuberculous oophoritis or salpingitis NOS</td>
</tr>
<tr>
<td align="left">A167000</td>
<td align="left">Tuberculous cervicitis</td>
</tr>
<tr>
<td align="left">A167100</td>
<td align="left">Tuberculous endometritis</td>
</tr>
<tr>
<td align="left">A167.00</td>
<td align="left">Tuberculosis of other female genital organs</td>
</tr>
<tr>
<td align="left">A167z00</td>
<td align="left">Tuberculosis of other female genital organs NOS</td>
</tr>
<tr>
<td align="left">A168.00</td>
<td align="left">Tuberculosis of urinary tract</td>
</tr>
<tr>
<td align="left">A16..00</td>
<td align="left">Tuberculosis of genitourinary system</td>
</tr>
<tr>
<td align="left">A16z.00</td>
<td align="left">Genitourinary tuberculosis NOS</td>
</tr>
<tr>
<td align="left">A170000</td>
<td align="left">Tuberculosis - lupus exedens</td>
</tr>
<tr>
<td align="left">A170100</td>
<td align="left">Tuberculosis - lupus vulgaris</td>
</tr>
<tr>
<td align="left">A170200</td>
<td align="left">Tuberculosis - scrofuloderma</td>
</tr>
<tr>
<td align="left">A170300</td>
<td align="left">Tuberculosis - lupus NOS</td>
</tr>
<tr>
<td align="left">A170500</td>
<td align="left">Tuberculosis cutis</td>
</tr>
<tr>
<td align="left">A170600</td>
<td align="left">Tuberculosis lichenoides</td>
</tr>
<tr>
<td align="left">A170700</td>
<td align="left">Tuberculosis papulonecrotica</td>
</tr>
<tr>
<td align="left">A170800</td>
<td align="left">Tuberculosis verrucosa cutis</td>
</tr>
<tr>
<td align="left">A170.00</td>
<td align="left">Tuberculosis of skin and subcutaneous tissue</td>
</tr>
<tr>
<td align="left">A170.11</td>
<td align="left">Lupus - tuberculous</td>
</tr>
<tr>
<td align="left">A170z00</td>
<td align="left">Tuberculosis of skin and subcutaneous tissue NOS</td>
</tr>
<tr>
<td align="left">A171000</td>
<td align="left">Bazin's disease - erythema induratum - TB hypersensitivity</td>
</tr>
<tr>
<td align="left">A171100</td>
<td align="left">Tuberculous erythema nodosum</td>
</tr>
<tr>
<td align="left">A171.00</td>
<td align="left">Tuberculosis with erythema nodosum hypersensitivity reaction</td>
</tr>
<tr>
<td align="left">A171z00</td>
<td align="left">Erythema nodosum with tuberculosis NOS</td>
</tr>
<tr>
<td align="left">A172000</td>
<td align="left">Tuberculous - cervical lymphadenitis</td>
</tr>
<tr>
<td align="left">A172011</td>
<td align="left">Scrofula - tuberculous cervical lymph nodes</td>
</tr>
<tr>
<td align="left">A172100</td>
<td align="left">Scrofulous tuberculous abscess</td>
</tr>
<tr>
<td align="left">A172200</td>
<td align="left">Tuberculous adenitis</td>
</tr>
<tr>
<td align="left">A172.00</td>
<td align="left">Tuberculosis of peripheral lymph nodes</td>
</tr>
<tr>
<td align="left">A172z00</td>
<td align="left">Tuberculosis of peripheral lymph nodes NOS</td>
</tr>
<tr>
<td align="left">A173000</td>
<td align="left">Tuberculous chorioretinitis</td>
</tr>
<tr>
<td align="left">A173100</td>
<td align="left">Tuberculous episcleritis</td>
</tr>
<tr>
<td align="left">A173200</td>
<td align="left">Tuberculous interstitial keratitis</td>
</tr>
<tr>
<td align="left">A173300</td>
<td align="left">Tuberculous chronic iridocyclitis</td>
</tr>
<tr>
<td align="left">A173400</td>
<td align="left">Tuberculous keratoconjunctivitis</td>
</tr>
<tr>
<td align="left">A173.00</td>
<td align="left">Tuberculosis of eye</td>
</tr>
<tr>
<td align="left">A173z00</td>
<td align="left">Tuberculosis of eye NOS</td>
</tr>
<tr>
<td align="left">A174.00</td>
<td align="left">Tuberculosis of ear</td>
</tr>
<tr>
<td align="left">A175.00</td>
<td align="left">Tuberculosis of thyroid gland</td>
</tr>
<tr>
<td align="left">A176.00</td>
<td align="left">Tuberculosis of adrenal glands - Addison's disease</td>
</tr>
<tr>
<td align="left">A177.00</td>
<td align="left">Tuberculosis spleen</td>
</tr>
<tr>
<td align="left">A178.00</td>
<td align="left">Tuberculosis oesophagus</td>
</tr>
<tr>
<td align="left">A17..00</td>
<td align="left">Tuberculosis of other organs</td>
</tr>
<tr>
<td align="left">A17y000</td>
<td align="left">Tuberculosis endocardium</td>
</tr>
<tr>
<td align="left">A17y100</td>
<td align="left">Tuberculosis myocardium</td>
</tr>
<tr>
<td align="left">A17y200</td>
<td align="left">Tuberculosis pericardium</td>
</tr>
<tr>
<td align="left">A17y300</td>
<td align="left">Tuberculosis of stomach</td>
</tr>
<tr>
<td align="left">A17y400</td>
<td align="left">Tuberculosis of liver</td>
</tr>
<tr>
<td align="left">A17y.00</td>
<td align="left">Tuberculosis of other specified organs</td>
</tr>
<tr>
<td align="left">A17yz00</td>
<td align="left">Tuberculosis of other specified organs NOS</td>
</tr>
<tr>
<td align="left">A17z.00</td>
<td align="left">Tuberculosis of other organs NOS</td>
</tr>
<tr>
<td align="left">A180000</td>
<td align="left">Acute miliary tuberculosis of a single specified site</td>
</tr>
<tr>
<td align="left">A180100</td>
<td align="left">Acute miliary tuberculosis of multiple sites</td>
</tr>
<tr>
<td align="left">A180.00</td>
<td align="left">Acute miliary tuberculosis</td>
</tr>
<tr>
<td align="left">A18..00</td>
<td align="left">Miliary tuberculosis</td>
</tr>
<tr>
<td align="left">A18y.00</td>
<td align="left">Other specified miliary tuberculosis</td>
</tr>
<tr>
<td align="left">A18z.00</td>
<td align="left">Miliary tuberculosis NOS</td>
</tr>
<tr>
<td align="left">A1...00</td>
<td align="left">Tuberculosis</td>
</tr>
<tr>
<td align="left">A1y..00</td>
<td align="left">Other specified tuberculosis</td>
</tr>
<tr>
<td align="left">A1z..00</td>
<td align="left">Tuberculosis NOS</td>
</tr>
<tr>
<td align="left">AE00.00</td>
<td align="left">Late effects of respiratory tuberculosis</td>
</tr>
<tr>
<td align="left">AE01.00</td>
<td align="left">Late effects of central nervous system tuberculosis</td>
</tr>
<tr>
<td align="left">AE02.00</td>
<td align="left">Late effects of genitourinary system tuberculosis</td>
</tr>
<tr>
<td align="left">AE03.00</td>
<td align="left">Late effects of tuberculosis of bones and joints</td>
</tr>
<tr>
<td align="left">AE04.00</td>
<td align="left">Late effects of tuberculosis of other specified organs</td>
</tr>
<tr>
<td align="left">AE0..00</td>
<td align="left">Late effects of tuberculosis</td>
</tr>
<tr>
<td align="left">AE0z.00</td>
<td align="left">Late effects of tuberculosis NOS</td>
</tr>
<tr>
<td align="left">Ayu1000</td>
<td align="left">[X]Other resp tubercul,confirmd bacteriologicly+histologicly</td>
</tr>
<tr>
<td align="left">Ayu1100</td>
<td align="left">[X]Resp tuberculos unspcfd,confirmd bacteriolog+histologicly</td>
</tr>
<tr>
<td align="left">Ayu1300</td>
<td align="left">[X]Resp TB unspcf,w'out mention/bacterial or histol confrmtn</td>
</tr>
<tr>
<td align="left">Ayu1400</td>
<td align="left">[X]Other tuberculosis of nervous system</td>
</tr>
<tr>
<td align="left">Ayu1600</td>
<td align="left">[X]Tuberculosis of other specified organs</td>
</tr>
<tr>
<td align="left">Ayu1800</td>
<td align="left">[X]Other miliary tuberculosis</td>
</tr>
<tr>
<td align="left">Ayu1900</td>
<td align="left">[X]Miliary tuberculosis, unspecified</td>
</tr>
<tr>
<td align="left">Ayu1.00</td>
<td align="left">[X]Tuberculosis</td>
</tr>
<tr>
<td align="left">AyuJ200</td>
<td align="left">[X]Sequelae of tuberculosis of bones and joints</td>
</tr>
<tr>
<td align="left">AyuJ400</td>
<td align="left">[X]Sequelae of respiratory and unspecified tuberculosis</td>
</tr>
<tr>
<td align="left">F004.00</td>
<td align="left">Meningitis - tuberculous</td>
</tr>
<tr>
<td align="left">F033300</td>
<td align="left">Encephalitis due to tuberculosis</td>
</tr>
<tr>
<td align="left">F033311</td>
<td align="left">Tuberculous encephalitis</td>
</tr>
<tr>
<td align="left">F040600</td>
<td align="left">Tuberculous intracranial abscess</td>
</tr>
<tr>
<td align="left">F041300</td>
<td align="left">Tuberculous intraspinal abscess</td>
</tr>
<tr>
<td align="left">F4A5500</td>
<td align="left">Keratitis due to tuberculosis</td>
</tr>
<tr>
<td align="left">G500300</td>
<td align="left">Acute pericarditis - tuberculous</td>
</tr>
<tr>
<td align="left">G500311</td>
<td align="left">TB - acute pericarditis</td>
</tr>
<tr>
<td align="left">G520600</td>
<td align="left">Acute myocarditis - tuberculous</td>
</tr>
<tr>
<td align="left">H450.00</td>
<td align="left">Pneumoconiosis associated with tuberculosis</td>
</tr>
<tr>
<td align="left">J550200</td>
<td align="left">Peritonitis - tuberculous</td>
</tr>
<tr>
<td align="left">K154800</td>
<td align="left">Cystitis in tuberculosis</td>
</tr>
<tr>
<td align="left">K214300</td>
<td align="left">Prostatitis in tuberculosis</td>
</tr>
<tr>
<td align="left">K43..00</td>
<td align="left">Female tuberculous pelvic inflammatory disease</td>
</tr>
<tr>
<td align="left">N018.00</td>
<td align="left">Tuberculous arthritis</td>
</tr>
<tr>
<td align="left">N304000</td>
<td align="left">Tuberculosis of cervical spine</td>
</tr>
<tr>
<td align="left">N304100</td>
<td align="left">Tuberculosis of thoracic spine</td>
</tr>
<tr>
<td align="left">N304200</td>
<td align="left">Tuberculosis of lumbar spine</td>
</tr>
<tr>
<td align="left">N304300</td>
<td align="left">Tuberculosis of sacrum/coccyx</td>
</tr>
<tr>
<td align="left">N304.00</td>
<td align="left">Tuberculosis of spine (Pott's)</td>
</tr>
<tr>
<td align="left">N304.11</td>
<td align="left">Tuberculosis of spine</td>
</tr>
<tr>
<td align="left">N305000</td>
<td align="left">Tuberculosis of unspecified limb bone</td>
</tr>
<tr>
<td align="left">N305100</td>
<td align="left">Tuberculosis of the upper arm bone</td>
</tr>
<tr>
<td align="left">N305200</td>
<td align="left">Tuberculosis of the forearm bone</td>
</tr>
<tr>
<td align="left">N305300</td>
<td align="left">Tuberculosis of the pelvic and thigh bones</td>
</tr>
<tr>
<td align="left">N305400</td>
<td align="left">Tuberculosis of the lower leg bone</td>
</tr>
<tr>
<td align="left">N305500</td>
<td align="left">Tuberculosis of other limb bones</td>
</tr>
<tr>
<td align="left">N305.00</td>
<td align="left">Tuberculosis of limb bones</td>
</tr>
<tr>
<td align="left">N306000</td>
<td align="left">Tuberculosis of bone, site unspecified</td>
</tr>
<tr>
<td align="left">N306100</td>
<td align="left">Tuberculosis of the bones of the shoulder region</td>
</tr>
<tr>
<td align="left">N306200</td>
<td align="left">Tuberculosis of the bones of the hand</td>
</tr>
<tr>
<td align="left">N306300</td>
<td align="left">Tuberculosis of the bones of the ankle and foot</td>
</tr>
<tr>
<td align="left">N306400</td>
<td align="left">Tuberculosis of the bones of other sites</td>
</tr>
<tr>
<td align="left">N306500</td>
<td align="left">Tuberculosis of the bones of multiple sites</td>
</tr>
<tr>
<td align="left">N306.00</td>
<td align="left">Tuberculosis of other bones</td>
</tr>
<tr>
<td align="left">N306z00</td>
<td align="left">Tuberculosis of bone NOS</td>
</tr>
<tr>
<td align="left">Q402400</td>
<td align="left">Congenital tuberculosis</td>
</tr>
<tr>
<td align="left">ZV12A00</td>
<td align="left">[V] Personal history of pulmonary tuberculosis</td>
</tr>
<tr>
<td align="left">ZV12B00</td>
<td align="left">[V] Personal history of tuberculosis</td>
</tr>
</tbody>
</table>
<h4>Secondary care diagnoses (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//secondary_care/ICD_TB.csv'>ICD_TB.csv</a>)</h4>
<table>
<thead>
<tr>
<th>ICD-10 code</th>
<th>ICD-10 Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left">A15</td>
<td align="left">Respiratory tuberculosis, bacteriologically and histologically confirmed</td>
</tr>
<tr>
<td align="left">A16</td>
<td align="left">Respiratory tuberculosis, not confirmed bacteriologically or histologically</td>
</tr>
<tr>
<td align="left">A17</td>
<td align="left">Tuberculosis of nervous system</td>
</tr>
<tr>
<td align="left">A18</td>
<td align="left">Tuberculosis of other organs</td>
</tr>
<tr>
<td align="left">A19</td>
<td align="left">Miliary tuberculosis</td>
</tr>
<tr>
<td align="left">B20.0</td>
<td align="left">HIV disease resulting in mycobacterial infection</td>
</tr>
<tr>
<td align="left">B90</td>
<td align="left">Sequelae of tuberculosis</td>
</tr>
<tr>
<td align="left">J65</td>
<td align="left">Pneumoconiosis associated with tuberculosis</td>
</tr>
<tr>
<td align="left">K23.0</td>
<td align="left">Tuberculous oesophagitis</td>
</tr>
<tr>
<td align="left">K67.3</td>
<td align="left">Tuberculous peritonitis</td>
</tr>
<tr>
<td align="left">K93.0</td>
<td align="left">Tuberculous disorders of intestines, peritoneum and mesenteric glands</td>
</tr>
<tr>
<td align="left">M01.1</td>
<td align="left">Tuberculous arthritis</td>
</tr>
<tr>
<td align="left">M49.0</td>
<td align="left">Tuberculosis of spine</td>
</tr>
<tr>
<td align="left">M90.0</td>
<td align="left">Tuberculosis of bone</td>
</tr>
<tr>
<td align="left">N33.0</td>
<td align="left">Tuberculous cystitis</td>
</tr>
<tr>
<td align="left">N74.0</td>
<td align="left">Tuberculous infection of cervix uteri</td>
</tr>
<tr>
<td align="left">N74.1</td>
<td align="left">Female tuberculous pelvic inflammatory disease</td>
</tr>
<tr>
<td align="left">P37.0</td>
<td align="left">Congenital tuberculosis</td>
</tr>
</tbody>
</table>
<h2>Tubulo-interstitial nephritis</h2>
<h4>Implementation</h4>
~~~
At the specified date, a patient is defined as having had 'Tubulo-interstitial nephritis' IF they meet the criteria for any of the following on or before the specified date. The earliest date on which the individual meets any of the following criteria on or before the specified date is defined as the first event date:
Primary care
1. 'Tubulo-interstitial nephritis' diagnosis or history of diagnosis during a consultation
OR
Secondary care
1. ALL diagnoses of 'Tubulo-interstitial nephritis' or history of diagnosis during a hospitalization
~~~
<h4>Primary care (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//primary_care/CPRD_TIN.csv'>CPRD_TIN.csv</a>)</h4>
<table>
<thead>
<tr>
<th>Read code</th>
<th>Read Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left">K03T.00</td>
<td align="left">Tubulo-interstit nephritis, not specif as acute or chron</td>
</tr>
<tr>
<td align="left">K03y200</td>
<td align="left">Other interstitial nephritis</td>
</tr>
<tr>
<td align="left">K0B1.00</td>
<td align="left">Renal tubulo-interstitial disorder/ neoplastic diseases</td>
</tr>
<tr>
<td align="left">K0B2.00</td>
<td align="left">Ren tub-interst disordr/blood dis+disordr inv immune mech</td>
</tr>
<tr>
<td align="left">K0B4000</td>
<td align="left">Renal tubulo-interstitial disorder in SLE</td>
</tr>
<tr>
<td align="left">K0B4.00</td>
<td align="left">Ren tub-interstitl disordr/systemc connectv tiss disorder</td>
</tr>
<tr>
<td align="left">K0B5.00</td>
<td align="left">Renal tubulo-interstitial disordrs in transplant rejectn</td>
</tr>
<tr>
<td align="left">K0B..00</td>
<td align="left">Renal tubulo-interstitial disorders in diseases EC</td>
</tr>
<tr>
<td align="left">K0C0.00</td>
<td align="left">Analgesic nephropathy</td>
</tr>
<tr>
<td align="left">K0C1.00</td>
<td align="left">Nephropathy induced by other drugs meds and biologl substncs</td>
</tr>
<tr>
<td align="left">K0C2.00</td>
<td align="left">Nephropathy induced by unspec drug medicament or biol subs</td>
</tr>
<tr>
<td align="left">K0C4.00</td>
<td align="left">Toxic nephropathy, not elsewhere classified</td>
</tr>
<tr>
<td align="left">K0C5.00</td>
<td align="left">Acute drug-induced interstitial nephritis</td>
</tr>
<tr>
<td align="left">K0C6.00</td>
<td align="left">Chronic lithium nephrotoxicity</td>
</tr>
<tr>
<td align="left">K0C..00</td>
<td align="left">Drug/heavy-metal-induced tubulo-interstitial and tub conditn</td>
</tr>
<tr>
<td align="left">Kyu1000</td>
<td align="left">[X]Other chronic tubulo-interstitial nephritis</td>
</tr>
<tr>
<td align="left">Kyu1400</td>
<td align="left">[X]Nephropathy induced by other drugs+biological substances</td>
</tr>
<tr>
<td align="left">Kyu1E00</td>
<td align="left">[X]Tubulo-interstit nephritis, not specif as acute or chron</td>
</tr>
<tr>
<td align="left">Kyu1.00</td>
<td align="left">[X]Renal tubulo-interstitial diseases</td>
</tr>
</tbody>
</table>
<h4>Secondary care diagnoses (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//secondary_care/ICD_TIN.csv'>ICD_TIN.csv</a>)</h4>
<table>
<thead>
<tr>
<th>ICD-10 code</th>
<th>ICD-10 Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left">N12</td>
<td align="left">Tubulo-interstitial nephritis, not specified as acute or chronic</td>
</tr>
<tr>
<td align="left">N14.0</td>
<td align="left">Analgesic nephropathy</td>
</tr>
<tr>
<td align="left">N14.1</td>
<td align="left">Nephropathy induced by other drugs, medicaments and biological substances</td>
</tr>
<tr>
<td align="left">N14.2</td>
<td align="left">Nephropathy induced by unspecified drug, medicament or biological substance</td>
</tr>
<tr>
<td align="left">N14.3</td>
<td align="left">Nephropathy induced by heavy metals</td>
</tr>
<tr>
<td align="left">N14.4</td>
<td align="left">Toxic nephropathy, not elsewhere classified</td>
</tr>
<tr>
<td align="left">N15.8</td>
<td align="left">Other specified renal tubulo-interstitial diseases</td>
</tr>
<tr>
<td align="left">N15.9</td>
<td align="left">Renal tubulo-interstitial disease, unspecified</td>
</tr>
<tr>
<td align="left">N16.1</td>
<td align="left">Renal tubulo-interstitial disorders in neoplastic diseases</td>
</tr>
<tr>
<td align="left">N16.2</td>
<td align="left">Renal tubulo-interstitial disorders in blood diseases and disorders involving the immune mechanism</td>
</tr>
<tr>
<td align="left">N16.3</td>
<td align="left">Renal tubulo-interstitial disorders in metabolic diseases</td>
</tr>
<tr>
<td align="left">N16.4</td>
<td align="left">Renal tubulo-interstitial disorders in systemic connective tissue disorders</td>
</tr>
<tr>
<td align="left">N16.5</td>
<td align="left">Renal tubulo-interstitial disorders in transplant rejection</td>
</tr>
<tr>
<td align="left">N16.8</td>
<td align="left">Renal tubulo-interstitial disorders in other diseases classified elsewhere</td>
</tr>
</tbody>
</table>
<h2>Ulcerative colitis</h2>
<h4>Implementation</h4>
~~~
At the specified date, a patient is defined as having had 'Ulcerative colitis' IF they meet the criteria for any of the following on or before the specified date. The earliest date on which the individual meets any of the following criteria on or before the specified date is defined as the first event date:
Primary care
1. 'Ulcerative colitis' diagnosis or history of diagnosis or procedure during a consultation
OR
Secondary care
1. ALL diagnoses of 'Ulcerative colitis' or history of diagnosis during a hospitalization
~~~
<h4>Primary care (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//primary_care/CPRD_ulc_colitis.csv'>CPRD_ulc_colitis.csv</a>)</h4>
<table>
<thead>
<tr>
<th>Read code</th>
<th>Read Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left">14C4.11</td>
<td align="left">H/O: ulcerative colitis</td>
</tr>
<tr>
<td align="left">J410000</td>
<td align="left">Ulcerative ileocolitis</td>
</tr>
<tr>
<td align="left">J410100</td>
<td align="left">Ulcerative colitis</td>
</tr>
<tr>
<td align="left">J410200</td>
<td align="left">Ulcerative rectosigmoiditis</td>
</tr>
<tr>
<td align="left">J410300</td>
<td align="left">Ulcerative proctitis</td>
</tr>
<tr>
<td align="left">J410400</td>
<td align="left">Exacerbation of ulcerative colitis</td>
</tr>
<tr>
<td align="left">J410.00</td>
<td align="left">Ulcerative proctocolitis</td>
</tr>
<tr>
<td align="left">J410z00</td>
<td align="left">Ulcerative proctocolitis NOS</td>
</tr>
<tr>
<td align="left">J411.00</td>
<td align="left">Ulcerative (chronic) enterocolitis</td>
</tr>
<tr>
<td align="left">J412.00</td>
<td align="left">Ulcerative (chronic) ileocolitis</td>
</tr>
<tr>
<td align="left">J413.00</td>
<td align="left">Ulcerative pancolitis</td>
</tr>
<tr>
<td align="left">J41..00</td>
<td align="left">Idiopathic proctocolitis</td>
</tr>
<tr>
<td align="left">J41..11</td>
<td align="left">Mucous colitis and/or proctitis</td>
</tr>
<tr>
<td align="left">J41..12</td>
<td align="left">Ulcerative colitis and/or proctitis</td>
</tr>
<tr>
<td align="left">J41y.00</td>
<td align="left">Other idiopathic proctocolitis</td>
</tr>
<tr>
<td align="left">J41yz00</td>
<td align="left">Other idiopathic proctocolitis NOS</td>
</tr>
<tr>
<td align="left">J41z.00</td>
<td align="left">Idiopathic proctocolitis NOS</td>
</tr>
<tr>
<td align="left">Jyu4100</td>
<td align="left">[X]Other ulcerative colitis</td>
</tr>
<tr>
<td align="left">N031000</td>
<td align="left">Arthropathy in ulcerative colitis</td>
</tr>
<tr>
<td align="left">N045400</td>
<td align="left">Juvenile arthritis in ulcerative colitis</td>
</tr>
</tbody>
</table>
<h4>Secondary care diagnoses (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//secondary_care/ICD_ulc_colitis.csv'>ICD_ulc_colitis.csv</a>)</h4>
<table>
<thead>
<tr>
<th>ICD-10 code</th>
<th>ICD-10 Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left">K51</td>
<td align="left">Ulcerative colitis</td>
</tr>
</tbody>
</table>
<h2>Undescended testicle</h2>
<h4>Implementation</h4>
~~~
At the specified date, a patient is defined as having had Undescended testicle IF they meet the criteria for any of the following on or before the specified date. The earliest date on which the individual meets any of the following criteria on or before the specified date is defined as the first event date:
Primary care
1. Undescended testicle diagnosis or history of diagnosis during a consultation
OR
Secondary care (ICD10)
1. ALL diagnoses of Undescended testicle or history of diagnosis during a hospitalization
~~~
<h4>Primary care (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//primary_care/CPRD_undescended_testis.csv'>CPRD_undescended_testis.csv</a>)</h4>
<table>
<thead>
<tr>
<th>Read code</th>
<th>Read Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left">B470200</td>
<td align="left">Seminoma of undescended testis</td>
</tr>
<tr>
<td align="left">B470300</td>
<td align="left">Teratoma of undescended testis</td>
</tr>
<tr>
<td align="left">B470.00</td>
<td align="left">Malignant neoplasm of undescended testis</td>
</tr>
<tr>
<td align="left">B470z00</td>
<td align="left">Malignant neoplasm of undescended testis NOS</td>
</tr>
<tr>
<td align="left">PC50000</td>
<td align="left">Cryptorchidism, unilateral</td>
</tr>
<tr>
<td align="left">PC50100</td>
<td align="left">Cryptorchidism, bilateral</td>
</tr>
<tr>
<td align="left">PC50.00</td>
<td align="left">Cryptorchidism</td>
</tr>
<tr>
<td align="left">PC50z00</td>
<td align="left">Cryptorchidism NOS</td>
</tr>
<tr>
<td align="left">PC51.00</td>
<td align="left">Ectopic testis</td>
</tr>
<tr>
<td align="left">PC5..00</td>
<td align="left">Undescended testicle</td>
</tr>
<tr>
<td align="left">PC5z000</td>
<td align="left">Undescended testis, unilateral</td>
</tr>
<tr>
<td align="left">PC5z011</td>
<td align="left">Maldescent of testis, unilateral</td>
</tr>
<tr>
<td align="left">PC5z100</td>
<td align="left">Undescended testis, bilateral</td>
</tr>
<tr>
<td align="left">PC5z111</td>
<td align="left">Maldescent of testis, bilateral</td>
</tr>
<tr>
<td align="left">PC5z.00</td>
<td align="left">Undescended testicle NOS</td>
</tr>
<tr>
<td align="left">PC5z.12</td>
<td align="left">Maldescent of testicle</td>
</tr>
</tbody>
</table>
<h4>Secondary care diagnoses (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//secondary_care/ICD_undescended_testis.csv'>ICD_undescended_testis.csv</a>)</h4>
<table>
<thead>
<tr>
<th>ICD-10 code</th>
<th>ICD-10 Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left">Q53</td>
<td align="left">Undescended testicle</td>
</tr>
</tbody>
</table>
<h2>Unstable Angina</h2>
<h4>Implementation</h4>
~~~
Use MODIFIED CALIBER 'Unstable Angina' phenotyping algorithm:
At the specified date, a patient is considered to have had 'Unstable Angina' IF they meet the criteria for any of the following on or before the specified date:
A hospitalization with the non-specific diagnosis of 'angina' as the primary diagnosis, where there is no procedure giving a reason for admission (PCI or CABG), is considered to be 'Unstable Angina'.
The earliest date on which the individual meets any of the following criteria on or before the specified date is defined as the first event date:
1. Primary care
a) Diagnosis of 'Unstable Angina'; unangina_gprd, category 2, 3
b) Diagnosis of acute coronary syndrome not otherwise specified; acs_gprd, category 3
2. Secondary care
a) Primary or secondary diagnosis of unspecified angina (ICD-10 I20.9) during a hospitalization that did not have a PCI or CABG procedure performed
b) Primary or secondary diagnosis of acute ischaemic heart disease during a hospitalization; acute_ihd_hes, category 3
c) Primary or secondary diagnosis of 'Unstable Angina' during a hospitalization; uangina_hes, category 1
~~~
<h4>Primary care (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//primary_care/CPRD_unstable_angina.csv'>CPRD_unstable_angina.csv</a>)</h4>
<table>
<thead>
<tr>
<th>Read code</th>
<th>Read Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left">662K300</td>
<td align="left">Angina control - worsening</td>
</tr>
<tr>
<td align="left">G311300</td>
<td align="left">Refractory angina</td>
</tr>
<tr>
<td align="left">G311400</td>
<td align="left">Worsening angina</td>
</tr>
<tr>
<td align="left">G311.00</td>
<td align="left">Preinfarction syndrome</td>
</tr>
<tr>
<td align="left">G311.11</td>
<td align="left">Crescendo angina</td>
</tr>
<tr>
<td align="left">G311.12</td>
<td align="left">Impending infarction</td>
</tr>
<tr>
<td align="left">G311.13</td>
<td align="left">Unstable angina</td>
</tr>
<tr>
<td align="left">G311.14</td>
<td align="left">Angina at rest</td>
</tr>
<tr>
<td align="left">G311100</td>
<td align="left">Unstable angina</td>
</tr>
<tr>
<td align="left">G311200</td>
<td align="left">Angina at rest</td>
</tr>
<tr>
<td align="left">G311z00</td>
<td align="left">Preinfarction syndrome NOS</td>
</tr>
<tr>
<td align="left">G312.00</td>
<td align="left">Coronary thrombosis not resulting in myocardial infarction</td>
</tr>
<tr>
<td align="left">G31y000</td>
<td align="left">Acute coronary insufficiency</td>
</tr>
<tr>
<td align="left">G33z000</td>
<td align="left">Status anginosus</td>
</tr>
<tr>
<td align="left">G311500</td>
<td align="left">Acute coronary syndrome</td>
</tr>
</tbody>
</table>
<h4>Secondary care diagnoses (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//secondary_care/ICD_unstable_angina.csv'>ICD_unstable_angina.csv</a>)</h4>
<table>
<thead>
<tr>
<th>ICD-10 code</th>
<th>ICD-10 Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left">I200</td>
<td align="left">Unstable angina</td>
</tr>
</tbody>
</table>
<h2>Urinary Incontinence</h2>
<h4>Implementation</h4>
~~~
At the specified date, a patient is defined as having had 'Urinary Incontinence' IF they meet the criteria for any of the following on or before the specified date. The earliest date on which the individual meets any of the following criteria on or before the specified date is defined as the first event date:
Primary care
1. 'Urinary Incontinence' diagnosis or history of diagnosis or procedure during a consultation
OR
Secondary care
1. ALL diagnoses of 'Urinary Incontinence' or history of diagnosis during a hospitalization
~~~
<h4>Primary care (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//primary_care/CPRD_urine_incont.csv'>CPRD_urine_incont.csv</a>)</h4>
<table>
<thead>
<tr>
<th>Read code</th>
<th>Read Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="right">1593</td>
<td align="left">H/O: stress incontinence</td>
</tr>
<tr>
<td align="left">16F..00</td>
<td align="left">Double incontinence</td>
</tr>
<tr>
<td align="left">1A23.00</td>
<td align="left">Incontinence of urine</td>
</tr>
<tr>
<td align="left">1A24.00</td>
<td align="left">Stress incontinence</td>
</tr>
<tr>
<td align="left">1A24.11</td>
<td align="left">Stress incontinence - symptom</td>
</tr>
<tr>
<td align="left">1A26.00</td>
<td align="left">Urge incontinence of urine</td>
</tr>
<tr>
<td align="left">3940.00</td>
<td align="left">Bladder: incontinent</td>
</tr>
<tr>
<td align="left">7B33800</td>
<td align="left">Insertion retropubic device stress urinary incontinence NEC</td>
</tr>
<tr>
<td align="left">7B33C00</td>
<td align="left">Insertion retropubic dev fem stress urinary incontinence NEC</td>
</tr>
<tr>
<td align="left">7B42111</td>
<td align="left">Insertion of Kaufman prosthesis for male incontinence</td>
</tr>
<tr>
<td align="left">7B42113</td>
<td align="left">Insertion of Rosen prosthesis for male incontinence</td>
</tr>
<tr>
<td align="left">8C14.00</td>
<td align="left">Incontinence care</td>
</tr>
<tr>
<td align="left">8D71.00</td>
<td align="left">Incontinence control</td>
</tr>
<tr>
<td align="left">8D7..12</td>
<td align="left">Incontinence control</td>
</tr>
<tr>
<td align="left">8HTX.00</td>
<td align="left">Referral to incontinence clinic</td>
</tr>
<tr>
<td align="left">K198.00</td>
<td align="left">Stress incontinence</td>
</tr>
<tr>
<td align="left">K586.00</td>
<td align="left">Stress incontinence - female</td>
</tr>
<tr>
<td align="left">Kyu5A00</td>
<td align="left">[X]Other specified urinary incontinence</td>
</tr>
<tr>
<td align="left">R083100</td>
<td align="left">[D]Urethral sphincter incontinence</td>
</tr>
<tr>
<td align="left">R083200</td>
<td align="left">[D] Urge incontinence</td>
</tr>
<tr>
<td align="left">R083.00</td>
<td align="left">[D]Incontinence of urine</td>
</tr>
<tr>
<td align="left">R083z00</td>
<td align="left">[D]Incontinence of urine NOS</td>
</tr>
<tr>
<td align="left">Z9EA.00</td>
<td align="left">Provision of incontinence appliance</td>
</tr>
</tbody>
</table>
<h4>Secondary care diagnoses (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//secondary_care/ICD_urine_incont.csv'>ICD_urine_incont.csv</a>)</h4>
<table>
<thead>
<tr>
<th>ICD-10 code</th>
<th>ICD-10 Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left">N39.3</td>
<td align="left">Stress incontinence</td>
</tr>
<tr>
<td align="left">N39.4</td>
<td align="left">Other specified urinary incontinence</td>
</tr>
</tbody>
</table>
<h2>Urinary Tract Infections</h2>
<h4>Implementation</h4>
~~~
At the specified date, a patient is defined as having had 'Urinary Tract Infections's IF they meet the criteria for any of the following on or before the specified date. The earliest date on which the individual meets any of the following criteria on or before the specified date is defined as the first event date:
Secondary care
1. ALL diagnoses of 'Urinary Tract Infections's or history of diagnosis during a hospitalization
~~~
<h4>Secondary care diagnoses (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//secondary_care/ICD_uti.csv'>ICD_uti.csv</a>)</h4>
<table>
<thead>
<tr>
<th>ICD-10 code</th>
<th>ICD-10 Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left">N08.0</td>
<td align="left">Glomerular disorders in infectious and parasitic diseases classified elsewhere</td>
</tr>
<tr>
<td align="left">N10</td>
<td align="left">Acute tubulo-interstitial nephritis</td>
</tr>
<tr>
<td align="left">N13.6</td>
<td align="left">Pyonephrosis</td>
</tr>
<tr>
<td align="left">N15.1</td>
<td align="left">Renal and perinephric abscess</td>
</tr>
<tr>
<td align="left">N16.0</td>
<td align="left">Renal tubulo-interstitial disorders in infectious and parasitic diseases classified elsewhere</td>
</tr>
<tr>
<td align="left">N29.0</td>
<td align="left">Late syphilis of kidney</td>
</tr>
<tr>
<td align="left">N29.1</td>
<td align="left">Other disorders of kidney and ureter in infectious and parasitic diseases classified elsewhere</td>
</tr>
<tr>
<td align="left">N30.0</td>
<td align="left">Acute cystitis</td>
</tr>
<tr>
<td align="left">N30.9</td>
<td align="left">Cystitis, unspecified</td>
</tr>
<tr>
<td align="left">N33.0</td>
<td align="left">Tuberculous cystitis</td>
</tr>
<tr>
<td align="left">N34</td>
<td align="left">Urethritis and urethral syndrome</td>
</tr>
<tr>
<td align="left">N37.0</td>
<td align="left">Urethritis in diseases classified elsewhere</td>
</tr>
<tr>
<td align="left">N39.0</td>
<td align="left">Urinary tract infection, site not specified</td>
</tr>
</tbody>
</table>
<h2>Urolithiasis</h2>
<h4>Implementation</h4>
~~~
At the specified date, a patient is defined as having had 'Urolithiasis' IF they meet the criteria for any of the following on or before the specified date. The earliest date on which the individual meets any of the following criteria on or before the specified date is defined as the first event date:
Primary care
1. 'Urolithiasis' diagnosis or history of diagnosis or procedure during a consultation
OR
Secondary care
1. ALL diagnoses of 'Urolithiasis' or history of diagnosis during a hospitalization
OR
Secondary care (OPCS4)
1. ALL procedures for 'Urolithiasis' during a hospitalization
~~~
<h4>Primary care (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//primary_care/CPRD_urolithiasis.csv'>CPRD_urolithiasis.csv</a>)</h4>
<table>
<thead>
<tr>
<th>Read code</th>
<th>Read Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left">14D3.00</td>
<td align="left">H/O: urinary stone</td>
</tr>
<tr>
<td align="left">1A52.00</td>
<td align="left">Renal colic</td>
</tr>
<tr>
<td align="left">1A52.11</td>
<td align="left">Renal colic, symptom</td>
</tr>
<tr>
<td align="left">4G41.00</td>
<td align="left">O/E: oxalate renal calculus</td>
</tr>
<tr>
<td align="left">4G42.00</td>
<td align="left">O/E: phosphate -staghorn-stone</td>
</tr>
<tr>
<td align="left">4G42.11</td>
<td align="left">Phosphate kidney stone</td>
</tr>
<tr>
<td align="left">4G43.00</td>
<td align="left">O/E: uric acid renal calculus</td>
</tr>
<tr>
<td align="left">4G44.00</td>
<td align="left">O/E: cystine renal calculus</td>
</tr>
<tr>
<td align="left">4G4..00</td>
<td align="left">O/E: renal calculus</td>
</tr>
<tr>
<td align="left">4G4..11</td>
<td align="left">O/E: kidney stone</td>
</tr>
<tr>
<td align="left">4G4Z.00</td>
<td align="left">O/E: renal stone NOS</td>
</tr>
<tr>
<td align="left">4G6..00</td>
<td align="left">O/E - ureteric calculus</td>
</tr>
<tr>
<td align="left">4G7..00</td>
<td align="left">O/E - urethral calculus</td>
</tr>
<tr>
<td align="left">4G81.00</td>
<td align="left">O/E - vesical oxalate calculus</td>
</tr>
<tr>
<td align="left">4G81.11</td>
<td align="left">Oxalate bladder stone</td>
</tr>
<tr>
<td align="left">4G82.00</td>
<td align="left">O/E-vesical uric acid calculus</td>
</tr>
<tr>
<td align="left">4G82.11</td>
<td align="left">Uric acid bladder stone</td>
</tr>
<tr>
<td align="left">4G83.00</td>
<td align="left">O/E-vesical phosphate calculus</td>
</tr>
<tr>
<td align="left">4G83.11</td>
<td align="left">Phosphate bladder stone</td>
</tr>
<tr>
<td align="left">4G8..00</td>
<td align="left">O/E - bladder calculus</td>
</tr>
<tr>
<td align="left">4G8Z.00</td>
<td align="left">O/E - bladder calculus NOS</td>
</tr>
<tr>
<td align="left">7B05000</td>
<td align="left">Unspecified open removal of calculus from kidney</td>
</tr>
<tr>
<td align="left">7B07000</td>
<td align="left">Nephroscopy and ultrasound lithotripsy of renal calculus</td>
</tr>
<tr>
<td align="left">7B07011</td>
<td align="left">Endoscopic ultrasound fragmentation of renal calculus</td>
</tr>
<tr>
<td align="left">7B07100</td>
<td align="left">Nephroscopy & electrohydraulic lithotripsy of renal calculus</td>
</tr>
<tr>
<td align="left">7B07200</td>
<td align="left">Nephroscopy and laser lithotripsy of renal calculus</td>
</tr>
<tr>
<td align="left">7B07211</td>
<td align="left">Endoscopic laser fragmentation of renal calculus</td>
</tr>
<tr>
<td align="left">7B07400</td>
<td align="left">Endoscopic extraction of calculus of kidney nec</td>
</tr>
<tr>
<td align="left">7B07.00</td>
<td align="left">Percutaneous renal stone surgery</td>
</tr>
<tr>
<td align="left">7B07.11</td>
<td align="left">Nephroscopic percutaneous lithotripsy of renal calculus</td>
</tr>
<tr>
<td align="left">7B07.12</td>
<td align="left">Percutaneous lithotripsy of renal calculus</td>
</tr>
<tr>
<td align="left">7B07y00</td>
<td align="left">Other specified percutaneous renal stone surgery</td>
</tr>
<tr>
<td align="left">7B07z00</td>
<td align="left">Percutaneous renal stone surgery NOS</td>
</tr>
<tr>
<td align="left">7B0B000</td>
<td align="left">ESWL for renal calculus of unspecified size</td>
</tr>
<tr>
<td align="left">7B0B100</td>
<td align="left">ESWL for renal calculus less than 2 cm in diameter</td>
</tr>
<tr>
<td align="left">7B0B200</td>
<td align="left">ESWL for renal calculus 2 cm or more in diameter</td>
</tr>
<tr>
<td align="left">7B0B.00</td>
<td align="left">Extracorporeal shockwave lithotripsy for renal calculus</td>
</tr>
<tr>
<td align="left">7B0B.11</td>
<td align="left">Extracorporeal fragmentation of renal calculus</td>
</tr>
<tr>
<td align="left">7B0By00</td>
<td align="left">Extracorporeal shockwave lithotripsy for renal calculus OS</td>
</tr>
<tr>
<td align="left">7B0Bz00</td>
<td align="left">Extracorporeal shockwave lithotripsy for renal calculus NOS</td>
</tr>
<tr>
<td align="left">7B17000</td>
<td align="left">Nephroscopic laser lithotripsy of ureteric calculus</td>
</tr>
<tr>
<td align="left">7B17011</td>
<td align="left">Nephroscopic laser fragmentation of ureteric calculus</td>
</tr>
<tr>
<td align="left">7B17100</td>
<td align="left">Other nephroscopic fragmentation of ureteric calculus</td>
</tr>
<tr>
<td align="left">7B17111</td>
<td align="left">Other nephroscopic lithotripsy of ureteric calculus</td>
</tr>
<tr>
<td align="left">7B17200</td>
<td align="left">Nephroscopic extraction of ureteric calculus</td>
</tr>
<tr>
<td align="left">7B18000</td>
<td align="left">Ureteroscopic laser lithotripsy of ureteric calculus</td>
</tr>
<tr>
<td align="left">7B18011</td>
<td align="left">Ureteroscopic laser fragmentation of ureteric calculus</td>
</tr>
<tr>
<td align="left">7B18100</td>
<td align="left">Other ureteroscopic fragmentation of ureteric calculus</td>
</tr>
<tr>
<td align="left">7B18200</td>
<td align="left">Ureteroscopic extraction of ureteric calculus</td>
</tr>
<tr>
<td align="left">7B18.00</td>
<td align="left">Ureteroscopic operations for ureteric calculus</td>
</tr>
<tr>
<td align="left">7B19000</td>
<td align="left">Cystoscopic laser lithotripsy of ureteric calculus</td>
</tr>
<tr>
<td align="left">7B19100</td>
<td align="left">Other cystoscopic fragmentation of ureteric calculus</td>
</tr>
<tr>
<td align="left">7B19200</td>
<td align="left">Cystoscopic extraction of ureteric calculus</td>
</tr>
<tr>
<td align="left">7B19211</td>
<td align="left">Basket extraction of ureteric calculus</td>
</tr>
<tr>
<td align="left">7B19212</td>
<td align="left">Dormia basket extraction of ureteric calculus</td>
</tr>
<tr>
<td align="left">7B19300</td>
<td align="left">Cystoscopic catheter drainage for ureteric calculus</td>
</tr>
<tr>
<td align="left">7B19400</td>
<td align="left">Cystoscopic dilation of ureter for drainage of calculus</td>
</tr>
<tr>
<td align="left">7B19.00</td>
<td align="left">Cystoscopic removal of ureteric calculus</td>
</tr>
<tr>
<td align="left">7B19y00</td>
<td align="left">Other specified cystoscopic removal of ureteric calculus</td>
</tr>
<tr>
<td align="left">7B19z00</td>
<td align="left">Cystoscopic removal of ureteric calculus NOS</td>
</tr>
<tr>
<td align="left">7B1C000</td>
<td align="left">Extracorp shockwave lithotripsy of unspec ureteric calculus</td>
</tr>
<tr>
<td align="left">7B1C100</td>
<td align="left">Extracorporeal shockwave therapy for stone in upper ureter</td>
</tr>
<tr>
<td align="left">7B1C200</td>
<td align="left">Extracorporeal shockwave lithotripsy for stone in mid-ureter</td>
</tr>
<tr>
<td align="left">7B1C300</td>
<td align="left">Extracorporeal shockwave lithotripsy stone in lower ureter</td>
</tr>
<tr>
<td align="left">7B1C.00</td>
<td align="left">Extracorporeal shockwave lithotripsy of ureteric calculus</td>
</tr>
<tr>
<td align="left">7B1Cy00</td>
<td align="left">Extracorporeal shockwave lithotripsy of ureteric calculus OS</td>
</tr>
<tr>
<td align="left">7B1Cz00</td>
<td align="left">Extracorporeal shockwave lithotripsy ureteric calculus NOS</td>
</tr>
<tr>
<td align="left">7B1F000</td>
<td align="left">Endoscopic extraction of calculus of urinary diversion</td>
</tr>
<tr>
<td align="left">7B25000</td>
<td align="left">Open removal of bladder calculus</td>
</tr>
<tr>
<td align="left">7B29100</td>
<td align="left">Other endoscopic extraction of bladder calculus</td>
</tr>
<tr>
<td align="left">7B29400</td>
<td align="left">Electrokinetic lithotripsy of bladder calculus</td>
</tr>
<tr>
<td align="left">7B2B400</td>
<td align="left">Removal of bladder calculus by urethral catheter suction</td>
</tr>
<tr>
<td align="left">7B42300</td>
<td align="left">Open urethrotomy and removal of calculus</td>
</tr>
<tr>
<td align="left">7B42400</td>
<td align="left">Open extraction of calculus from urethra</td>
</tr>
<tr>
<td align="left">7B43900</td>
<td align="left">Endoscopic removal of urethral calculus</td>
</tr>
<tr>
<td align="left">C341100</td>
<td align="left">Uric acid nephrolithiasis</td>
</tr>
<tr>
<td align="left">C341111</td>
<td align="left">Renal stone - uric acid</td>
</tr>
<tr>
<td align="left">K100600</td>
<td align="left">Calculous pyelonephritis</td>
</tr>
<tr>
<td align="left">K112.00</td>
<td align="left">Hydronephrosis with renal and ureteral calculous obstruction</td>
</tr>
<tr>
<td align="left">K120000</td>
<td align="left">Staghorn calculus</td>
</tr>
<tr>
<td align="left">K120.00</td>
<td align="left">Calculus of kidney</td>
</tr>
<tr>
<td align="left">K120.11</td>
<td align="left">Nephrolithiasis NOS</td>
</tr>
<tr>
<td align="left">K120.12</td>
<td align="left">Renal calculus</td>
</tr>
<tr>
<td align="left">K120.13</td>
<td align="left">Renal stone</td>
</tr>
<tr>
<td align="left">K120z00</td>
<td align="left">Renal calculus NOS</td>
</tr>
<tr>
<td align="left">K121.00</td>
<td align="left">Calculus of ureter</td>
</tr>
<tr>
<td align="left">K121.11</td>
<td align="left">Ureteric calculus</td>
</tr>
<tr>
<td align="left">K121.12</td>
<td align="left">Ureteric stone</td>
</tr>
<tr>
<td align="left">K121.13</td>
<td align="left">Ureterolithiasis</td>
</tr>
<tr>
<td align="left">K122.00</td>
<td align="left">Calculus of kidney with calculus of ureter</td>
</tr>
<tr>
<td align="left">K12..00</td>
<td align="left">Calculus of kidney and ureter</td>
</tr>
<tr>
<td align="left">K12..11</td>
<td align="left">Kidney calculus</td>
</tr>
<tr>
<td align="left">K12..12</td>
<td align="left">Urinary calculus</td>
</tr>
<tr>
<td align="left">K12z.00</td>
<td align="left">Urinary calculus NOS</td>
</tr>
<tr>
<td align="left">K140000</td>
<td align="left">Calculus in diverticulum of bladder</td>
</tr>
<tr>
<td align="left">K140100</td>
<td align="left">Other calculus in bladder</td>
</tr>
<tr>
<td align="left">K140.00</td>
<td align="left">Bladder calculus</td>
</tr>
<tr>
<td align="left">K140.11</td>
<td align="left">Bladder stone</td>
</tr>
<tr>
<td align="left">K140z00</td>
<td align="left">Bladder calculus NOS</td>
</tr>
<tr>
<td align="left">K141.00</td>
<td align="left">Calculus in urethra</td>
</tr>
<tr>
<td align="left">K14..00</td>
<td align="left">Lower urinary tract calculus</td>
</tr>
<tr>
<td align="left">K14y.00</td>
<td align="left">Other lower urinary tract calculus</td>
</tr>
<tr>
<td align="left">K14z.00</td>
<td align="left">Lower urinary tract calculus NOS</td>
</tr>
<tr>
<td align="left">K1A..00</td>
<td align="left">Urinary calculus in schistosomiasis</td>
</tr>
<tr>
<td align="left">Kyu3000</td>
<td align="left">[X]Other lower urinary tract calculus</td>
</tr>
<tr>
<td align="left">Kyu3100</td>
<td align="left">[X]Calculus of urinary tract in other diseases CE</td>
</tr>
<tr>
<td align="left">Kyu3.00</td>
<td align="left">[X]Urolithiasis</td>
</tr>
<tr>
<td align="left">R080000</td>
<td align="left">[D]Renal colic, unspecified</td>
</tr>
<tr>
<td align="left">R080100</td>
<td align="left">[D]Ureteric colic</td>
</tr>
<tr>
<td align="left">R080.00</td>
<td align="left">[D]Renal colic</td>
</tr>
<tr>
<td align="left">R080z00</td>
<td align="left">[D]Renal colic NOS</td>
</tr>
</tbody>
</table>
<h4>Secondary care diagnoses (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//secondary_care/ICD_urolithiasis.csv'>ICD_urolithiasis.csv</a>)</h4>
<table>
<thead>
<tr>
<th>ICD-10 code</th>
<th>ICD-10 Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left">N13.2</td>
<td align="left">Hydronephrosis with renal and ureteral calculous obstruction</td>
</tr>
<tr>
<td align="left">N20.0</td>
<td align="left">Calculus of kidney</td>
</tr>
<tr>
<td align="left">N20.1</td>
<td align="left">Calculus of ureter</td>
</tr>
<tr>
<td align="left">N20.2</td>
<td align="left">Calculus of kidney with calculus of ureter</td>
</tr>
<tr>
<td align="left">N20.9</td>
<td align="left">Urinary calculus, unspecified</td>
</tr>
<tr>
<td align="left">N21.0</td>
<td align="left">Calculus in bladder</td>
</tr>
<tr>
<td align="left">N21.1</td>
<td align="left">Calculus in urethra</td>
</tr>
<tr>
<td align="left">N21.8</td>
<td align="left">Other lower urinary tract calculus</td>
</tr>
<tr>
<td align="left">N21.9</td>
<td align="left">Calculus of lower urinary tract, unspecified</td>
</tr>
<tr>
<td align="left">N22.8</td>
<td align="left">Calculus of urinary tract in other diseases classified elsewhere</td>
</tr>
<tr>
<td align="left">N23.X</td>
<td align="left">Unspecified renal colic</td>
</tr>
</tbody>
</table>
<h4>Secondary care procedures (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//secondary_care/OPCS_urolithiasis.csv'>OPCS_urolithiasis.csv</a>)</h4>
<table>
<thead>
<tr>
<th>OPCS-4 code</th>
<th>OPCS-4 Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left">M06.1</td>
<td align="left">Open removal of calculus from kidney</td>
</tr>
<tr>
<td align="left">M09</td>
<td align="left">Therapeutic endoscopic operations on calculus of kidney</td>
</tr>
<tr>
<td align="left">M09.1</td>
<td align="left">Endoscopic ultrasound fragmentation of calculus of kidney</td>
</tr>
<tr>
<td align="left">M09.2</td>
<td align="left">Endoscopic electrohydraulic shockwave fragmentation of calculus of kidney</td>
</tr>
<tr>
<td align="left">M09.3</td>
<td align="left">Endoscopic laser fragmentation of calculus of kidney</td>
</tr>
<tr>
<td align="left">M09.4</td>
<td align="left">Endoscopic extraction of calculus of kidney NEC</td>
</tr>
<tr>
<td align="left">M09.8</td>
<td align="left">Other specified therapeutic endoscopic operations on calculus of kidney</td>
</tr>
<tr>
<td align="left">M09.9</td>
<td align="left">Unspecified therapeutic endoscopic operations on calculus of kidney</td>
</tr>
<tr>
<td align="left">M14</td>
<td align="left">Extracorporeal fragmentation of calculus of kidney</td>
</tr>
<tr>
<td align="left">M14.1</td>
<td align="left">Extracorporeal shock wave lithotripsy of calculus of kidney</td>
</tr>
<tr>
<td align="left">M14.8</td>
<td align="left">Other specified extracorporeal fragmentation of calculus of kidney</td>
</tr>
<tr>
<td align="left">M14.9</td>
<td align="left">Unspecified extracorporeal fragmentation of calculus of kidney</td>
</tr>
<tr>
<td align="left">M16.4</td>
<td align="left">Percutaneous nephrolithotomy NEC</td>
</tr>
<tr>
<td align="left">M23.1</td>
<td align="left">Open ureterolithotomy</td>
</tr>
<tr>
<td align="left">M26.1</td>
<td align="left">Nephroscopic laser fragmentation of calculus of ureter</td>
</tr>
<tr>
<td align="left">M26.2</td>
<td align="left">Nephroscopic fragmentation of calculus of ureter NEC</td>
</tr>
<tr>
<td align="left">M26.3</td>
<td align="left">Nephroscopic extraction of calculus of ureter</td>
</tr>
<tr>
<td align="left">M27.1</td>
<td align="left">Ureteroscopic laser fragmentation of calculus of ureter</td>
</tr>
<tr>
<td align="left">M27.2</td>
<td align="left">Ureteroscopic fragmentation of calculus of ureter NEC</td>
</tr>
<tr>
<td align="left">M27.3</td>
<td align="left">Ureteroscopic extraction of calculus of ureter</td>
</tr>
<tr>
<td align="left">M28</td>
<td align="left">Other endoscopic removal of calculus from ureter</td>
</tr>
<tr>
<td align="left">M28.1</td>
<td align="left">Endoscopic laser fragmentation of calculus of ureter NEC</td>
</tr>
<tr>
<td align="left">M28.2</td>
<td align="left">Endoscopic fragmentation of calculus of ureter NEC</td>
</tr>
<tr>
<td align="left">M28.3</td>
<td align="left">Endoscopic extraction of calculus of ureter NEC</td>
</tr>
<tr>
<td align="left">M28.4</td>
<td align="left">Endoscopic catheter drainage of calculus of ureter</td>
</tr>
<tr>
<td align="left">M28.5</td>
<td align="left">Endoscopic drainage of calculus of ureter by dilation of ureter</td>
</tr>
<tr>
<td align="left">M28.8</td>
<td align="left">Other specified other endoscopic removal of calculus from ureter</td>
</tr>
<tr>
<td align="left">M28.9</td>
<td align="left">Unspecified other endoscopic removal of calculus from ureter</td>
</tr>
<tr>
<td align="left">M31</td>
<td align="left">Extracorporeal fragmentation of calculus of ureter</td>
</tr>
<tr>
<td align="left">M31.1</td>
<td align="left">Extracorporeal shockwave lithotripsy of calculus of ureter</td>
</tr>
<tr>
<td align="left">M31.8</td>
<td align="left">Other specified extracorporeal fragmentation of calculus of ureter</td>
</tr>
<tr>
<td align="left">M31.9</td>
<td align="left">Unspecified extracorporeal fragmentation of calculus of ureter</td>
</tr>
<tr>
<td align="left">M39.1</td>
<td align="left">Open removal of calculus from bladder</td>
</tr>
<tr>
<td align="left">M44.2</td>
<td align="left">Endoscopic extraction of calculus of bladder NEC</td>
</tr>
<tr>
<td align="left">M75.4</td>
<td align="left">Open extraction of calculus from urethra</td>
</tr>
<tr>
<td align="left">M86.1</td>
<td align="left">Endoscopic extraction of calculus of urinary diversion</td>
</tr>
</tbody>
</table>
<h2>Urticaria</h2>
<h4>Implementation</h4>
~~~
At the specified date, a patient is defined as having had 'Urticaria' IF they meet the criteria for any of the following on or before the specified date. The earliest date on which the individual meets any of the following criteria on or before the specified date is defined as the first event date:
Primary care
1. 'Urticaria' diagnosis or history of diagnosis during a consultation
OR
Secondary care (ICD10)
1. ALL diagnoses of 'Urticaria' or history of diagnosis during a hospitalization
~~~
<h4>Primary care (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//primary_care/CPRD_urticaria.csv'>CPRD_urticaria.csv</a>)</h4>
<table>
<thead>
<tr>
<th>Read code</th>
<th>Read Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left">2F82.00</td>
<td align="left">O/E - weals present</td>
</tr>
<tr>
<td align="left">2F8..00</td>
<td align="left">O/E - weals present</td>
</tr>
<tr>
<td align="left">2F8Z.00</td>
<td align="left">O/E - weals NOS</td>
</tr>
<tr>
<td align="left">M12A200</td>
<td align="left">Solar urticaria</td>
</tr>
<tr>
<td align="left">M280.00</td>
<td align="left">Allergic urticaria</td>
</tr>
<tr>
<td align="left">M280.11</td>
<td align="left">Drug induced urticaria</td>
</tr>
<tr>
<td align="left">M281.00</td>
<td align="left">Idiopathic urticaria</td>
</tr>
<tr>
<td align="left">M282000</td>
<td align="left">Cold urticaria</td>
</tr>
<tr>
<td align="left">M282100</td>
<td align="left">Thermal urticaria</td>
</tr>
<tr>
<td align="left">M282111</td>
<td align="left">Heat urticaria</td>
</tr>
<tr>
<td align="left">M282.00</td>
<td align="left">Urticaria due to cold and heat</td>
</tr>
<tr>
<td align="left">M282z00</td>
<td align="left">Urticaria due to cold and heat NOS</td>
</tr>
<tr>
<td align="left">M283.00</td>
<td align="left">Dermatographic urticaria</td>
</tr>
<tr>
<td align="left">M283.11</td>
<td align="left">Factitial urticaria</td>
</tr>
<tr>
<td align="left">M284.00</td>
<td align="left">Vibratory urticaria</td>
</tr>
<tr>
<td align="left">M285.00</td>
<td align="left">Cholinergic urticaria</td>
</tr>
<tr>
<td align="left">M286.00</td>
<td align="left">Contact urticaria</td>
</tr>
<tr>
<td align="left">M287.00</td>
<td align="left">Physical urticaria</td>
</tr>
<tr>
<td align="left">M28..00</td>
<td align="left">Urticaria</td>
</tr>
<tr>
<td align="left">M28y000</td>
<td align="left">Urticaria geographica</td>
</tr>
<tr>
<td align="left">M28y100</td>
<td align="left">Menstrual urticaria</td>
</tr>
<tr>
<td align="left">M28y200</td>
<td align="left">Urticaria persistans</td>
</tr>
<tr>
<td align="left">M28y.00</td>
<td align="left">Other specified urticaria</td>
</tr>
<tr>
<td align="left">M28y.11</td>
<td align="left">Nettle rash</td>
</tr>
<tr>
<td align="left">M28yz00</td>
<td align="left">Other specified urticaria NOS</td>
</tr>
<tr>
<td align="left">M28z.00</td>
<td align="left">Urticaria NOS</td>
</tr>
<tr>
<td align="left">M28z.11</td>
<td align="left">Hives</td>
</tr>
<tr>
<td align="left">Myu4000</td>
<td align="left">[X]Other urticaria</td>
</tr>
<tr>
<td align="left">Myu4.00</td>
<td align="left">[X]Urticaria and erythema</td>
</tr>
<tr>
<td align="left">PH32100</td>
<td align="left">Urticaria pigmentosa</td>
</tr>
</tbody>
</table>
<h4>Secondary care diagnoses (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//secondary_care/ICD_urticaria.csv'>ICD_urticaria.csv</a>)</h4>
<table>
<thead>
<tr>
<th>ICD-10 code</th>
<th>ICD-10 Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left">L50</td>
<td align="left">Urticaria</td>
</tr>
</tbody>
</table>
<h2>Venous thromboembolic disease (Excl PE)</h2>
<h4>Implementation</h4>
~~~
At the specified date, a patient is defined as having had Venous thromboembolic disease (Excl PE) IF they meet the criteria for any of the following on or before the specified date. The earliest date on which the individual meets any of the following criteria on or before the specified date is defined as the first event date:
Primary care
1. Venous thromboembolic disease (Excl PE) diagnosis or history of diagnosis during a consultation
OR
Secondary care (ICD10)
1. ALL diagnoses of Venous thromboembolic disease (Excl PE) or history of diagnosis during a hospitalization
~~~
<h4>Primary care (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//primary_care/CPRD_vte_ex_pe.csv'>CPRD_vte_ex_pe.csv</a>)</h4>
<table>
<thead>
<tr>
<th>Read code</th>
<th>Read Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left">14A8100</td>
<td align="left">H/O: Deep Vein Thrombosis</td>
</tr>
<tr>
<td align="left">8CMWA00</td>
<td align="left">On deep vein thrombosis care pathway</td>
</tr>
<tr>
<td align="left">9kg0.00</td>
<td align="left">DVT stage 1 service level - enhanced services administration</td>
</tr>
<tr>
<td align="left">9kg..00</td>
<td align="left">Deep vein thrombosis - enhanced services administration</td>
</tr>
<tr>
<td align="left">9kg0.11</td>
<td align="left">DVT enhanced services administration stage 1 service level</td>
</tr>
<tr>
<td align="left">9kg1.00</td>
<td align="left">DVT stage 2 service level - enhanced services administration</td>
</tr>
<tr>
<td align="left">9kg2.00</td>
<td align="left">DVT stage 3 service level - enhanced services administration</td>
</tr>
<tr>
<td align="left">F050000</td>
<td align="left">Embolism cavernous sinus</td>
</tr>
<tr>
<td align="left">F050.00</td>
<td align="left">Embolism of central nervous system venous sinus</td>
</tr>
<tr>
<td align="left">F05..00</td>
<td align="left">Phlebitis and thrombophlebitis of intracranial sinuses</td>
</tr>
<tr>
<td align="left">F050100</td>
<td align="left">Embolism superior longitudinal sinus</td>
</tr>
<tr>
<td align="left">F050300</td>
<td align="left">Embolism transverse sinus</td>
</tr>
<tr>
<td align="left">F051000</td>
<td align="left">Thrombosis cavernous sinus</td>
</tr>
<tr>
<td align="left">F051.00</td>
<td align="left">Thrombosis of central nervous system venous sinuses</td>
</tr>
<tr>
<td align="left">F051100</td>
<td align="left">Thrombosis of superior longitudinal sinus</td>
</tr>
<tr>
<td align="left">F051200</td>
<td align="left">Thrombosis lateral sinus</td>
</tr>
<tr>
<td align="left">F051300</td>
<td align="left">Thrombosis transverse sinus</td>
</tr>
<tr>
<td align="left">F051z00</td>
<td align="left">Thrombosis of central nervous system venous sinus NOS</td>
</tr>
<tr>
<td align="left">F053000</td>
<td align="left">Thrombophlebitis of cavernous sinus</td>
</tr>
<tr>
<td align="left">F053.00</td>
<td align="left">Thrombophlebitis of central nervous system venous sinuses</td>
</tr>
<tr>
<td align="left">F053100</td>
<td align="left">Thrombophlebitis of superior longitudinal venous sinus</td>
</tr>
<tr>
<td align="left">F05z.00</td>
<td align="left">Phlebitis or thrombophlebitis of CNS venous sinus NOS</td>
</tr>
<tr>
<td align="left">G676000</td>
<td align="left">Cereb infarct due cerebral venous thrombosis, nonpyogenic</td>
</tr>
<tr>
<td align="left">G676.00</td>
<td align="left">Nonpyogenic venous sinus thrombosis</td>
</tr>
<tr>
<td align="left">G67A.00</td>
<td align="left">Cerebral vein thrombosis</td>
</tr>
<tr>
<td align="left">G801.00</td>
<td align="left">Deep vein phlebitis and thrombophlebitis of the leg</td>
</tr>
<tr>
<td align="left">G801.11</td>
<td align="left">Deep vein thrombosis</td>
</tr>
<tr>
<td align="left">G801.12</td>
<td align="left">Deep vein thrombosis, leg</td>
</tr>
<tr>
<td align="left">G801.13</td>
<td align="left">DVT - Deep vein thrombosis</td>
</tr>
<tr>
<td align="left">G801600</td>
<td align="left">Thrombophlebitis of the femoral vein</td>
</tr>
<tr>
<td align="left">G801700</td>
<td align="left">Thrombophlebitis of the popliteal vein</td>
</tr>
<tr>
<td align="left">G801800</td>
<td align="left">Thrombophlebitis of the anterior tibial vein</td>
</tr>
<tr>
<td align="left">G801900</td>
<td align="left">Thrombophlebitis of the dorsalis pedis vein</td>
</tr>
<tr>
<td align="left">G801A00</td>
<td align="left">Thrombophlebitis of the posterior tibial vein</td>
</tr>
<tr>
<td align="left">G801B00</td>
<td align="left">Deep vein thrombophlebitis of the leg unspecified</td>
</tr>
<tr>
<td align="left">G801C00</td>
<td align="left">Deep vein thrombosis of leg related to air travel</td>
</tr>
<tr>
<td align="left">G801D00</td>
<td align="left">Deep vein thrombosis of lower limb</td>
</tr>
<tr>
<td align="left">G801E00</td>
<td align="left">Deep vein thrombosis of leg related to intravenous drug use</td>
</tr>
<tr>
<td align="left">G801F00</td>
<td align="left">Deep vein thrombosis of peroneal vein</td>
</tr>
<tr>
<td align="left">G801G00</td>
<td align="left">Recurrent deep vein thrombosis</td>
</tr>
<tr>
<td align="left">G801z00</td>
<td align="left">Deep vein phlebitis and thrombophlebitis of the leg NOS</td>
</tr>
<tr>
<td align="left">G80y.11</td>
<td align="left">Phlebitis and/or thrombophlebitis of iliac vein</td>
</tr>
<tr>
<td align="left">G80y400</td>
<td align="left">Thrombophlebitis of the common iliac vein</td>
</tr>
<tr>
<td align="left">G80y500</td>
<td align="left">Thrombophlebitis of the internal iliac vein</td>
</tr>
<tr>
<td align="left">G80y600</td>
<td align="left">Thrombophlebitis of the external iliac vein</td>
</tr>
<tr>
<td align="left">G80y700</td>
<td align="left">Thrombophlebitis of the iliac vein unspecified</td>
</tr>
<tr>
<td align="left">G80y800</td>
<td align="left">Phlebitis and thrombophlebitis of the iliac vein NOS</td>
</tr>
<tr>
<td align="left">G81..00</td>
<td align="left">Portal vein thrombosis</td>
</tr>
<tr>
<td align="left">G820.00</td>
<td align="left">Budd - Chiari syndrome (hepatic vein thrombosis)</td>
</tr>
<tr>
<td align="left">G820.11</td>
<td align="left">Hepatic vein thrombosis</td>
</tr>
<tr>
<td align="left">G822000</td>
<td align="left">Thrombosis of inferior vena cava</td>
</tr>
<tr>
<td align="left">G822.00</td>
<td align="left">Embolism and thrombosis of the vena cava</td>
</tr>
<tr>
<td align="left">G823.00</td>
<td align="left">Embolism and thrombosis of the renal vein</td>
</tr>
<tr>
<td align="left">G824.00</td>
<td align="left">Axillary vein thrombosis</td>
</tr>
<tr>
<td align="left">G825.00</td>
<td align="left">Thrombosis of subclavian vein</td>
</tr>
<tr>
<td align="left">G826.00</td>
<td align="left">Thrombosis of internal jugular vein</td>
</tr>
<tr>
<td align="left">G827.00</td>
<td align="left">Thrombosis of external jugular vein</td>
</tr>
<tr>
<td align="left">Gyu8000</td>
<td align="left">[X]Phlebitis+thrombophlebitis/oth deep vessls/low extremites</td>
</tr>
<tr>
<td align="left">J420200</td>
<td align="left">Thrombus of the superior mesenteric veins</td>
</tr>
<tr>
<td align="left">SP12200</td>
<td align="left">Post operative deep vein thrombosis</td>
</tr>
<tr>
<td align="left">ZV12800</td>
<td align="left">[V] Personal history deep vein thrombosis</td>
</tr>
<tr>
<td align="left">ZV12811</td>
<td align="left">[V] Personal history DVT- deep vein thrombosis</td>
</tr>
</tbody>
</table>
<h4>Secondary care diagnoses (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//secondary_care/ICD_vte_ex_pe.csv'>ICD_vte_ex_pe.csv</a>)</h4>
<table>
<thead>
<tr>
<th>ICD-10 code</th>
<th>ICD-10 Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left">I80.1</td>
<td align="left">Phlebitis and thrombophlebitis of femoral vein</td>
</tr>
<tr>
<td align="left">I80.2</td>
<td align="left">Phlebitis and thrombophlebitis of other deep vessels of lower extremities</td>
</tr>
<tr>
<td align="left">I63.6</td>
<td align="left">Cerebral infarction due to cerebral venous thrombosis, nonpyogenic</td>
</tr>
<tr>
<td align="left">I67.6</td>
<td align="left">Nonpyogenic thrombosis of intracranial venous system</td>
</tr>
<tr>
<td align="left">I81</td>
<td align="left">Portal vein thrombosis</td>
</tr>
<tr>
<td align="left">I82.0</td>
<td align="left">Budd-Chiari syndrome</td>
</tr>
<tr>
<td align="left">I82.2</td>
<td align="left">Embolism and thrombosis of vena cava</td>
</tr>
<tr>
<td align="left">I82.3</td>
<td align="left">Embolism and thrombosis of renal vein</td>
</tr>
</tbody>
</table>
<h2>Ventricular tachycardia</h2>
<h4>Implementation</h4>
~~~
At the specified date, a patient is defined as having had 'Ventricular tachycardia' IF they meet the criteria for any of the following on or before the specified date. The earliest date on which the individual meets any of the following criteria on or before the specified date is defined as the first event date:
Primary care
1. 'Ventricular tachycardia' diagnosis or history of diagnosis during a consultation
OR
Secondary care (ICD10)
1. ALL diagnoses of 'Ventricular tachycardia' or history of diagnosis during a hospitalization
~~~
<h4>Primary care (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//primary_care/CPRD_VT.csv'>CPRD_VT.csv</a>)</h4>
<table>
<thead>
<tr>
<th>Read code</th>
<th>Read Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left">14AP.00</td>
<td align="left">History of ventricular tachycardia</td>
</tr>
<tr>
<td align="left">3282.00</td>
<td align="left">ECG: ventricular tachycardia</td>
</tr>
<tr>
<td align="left">G571.00</td>
<td align="left">Paroxysmal ventricular tachycardia</td>
</tr>
<tr>
<td align="left">G571.11</td>
<td align="left">Ventricular tachycardia</td>
</tr>
</tbody>
</table>
<h4>Secondary care diagnoses (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//secondary_care/ICD_VT.csv'>ICD_VT.csv</a>)</h4>
<table>
<thead>
<tr>
<th>ICD-10 code</th>
<th>ICD-10 Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left">I47.2</td>
<td align="left">Ventricular tachycardia</td>
</tr>
</tbody>
</table>
<h2>Viral diseases (excl chronic hepatitis/HIV)</h2>
<h4>Implementation</h4>
~~~
At the specified date, a patient is defined as having had Viral diseases (excl chronic hepatitis/HIV) IF they meet the criteria for any of the following on or before the specified date. The earliest date on which the individual meets any of the following criteria on or before the specified date is defined as the first event date:
Secondary care
1. ALL diagnoses of Viral diseases (excl chronic hepatitis/HIV) or history of diagnosis during a hospitalization
~~~
<h4>Secondary care diagnoses (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//secondary_care/ICD_viral.csv'>ICD_viral.csv</a>)</h4>
<table>
<thead>
<tr>
<th>ICD-10 code</th>
<th>ICD-10 Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left">A08.0</td>
<td align="left">Rotaviral enteritis</td>
</tr>
<tr>
<td align="left">A08.1</td>
<td align="left">Acute gastroenteropathy due to Norwalk agent</td>
</tr>
<tr>
<td align="left">A08.2</td>
<td align="left">Adenoviral enteritis</td>
</tr>
<tr>
<td align="left">A08.3</td>
<td align="left">Other viral enteritis</td>
</tr>
<tr>
<td align="left">A08.4</td>
<td align="left">Viral intestinal infection, unspecified</td>
</tr>
<tr>
<td align="left">A60</td>
<td align="left">Anogenital herpesviral [herpes simplex] infection</td>
</tr>
<tr>
<td align="left">A63.0</td>
<td align="left">Anogenital (venereal) warts</td>
</tr>
<tr>
<td align="left">A80</td>
<td align="left">Acute poliomyelitis</td>
</tr>
<tr>
<td align="left">A81.1</td>
<td align="left">Subacute sclerosing panencephalitis</td>
</tr>
<tr>
<td align="left">A81.2</td>
<td align="left">Progressive multifocal leukoencephalopathy</td>
</tr>
<tr>
<td align="left">A82</td>
<td align="left">Rabies</td>
</tr>
<tr>
<td align="left">A83</td>
<td align="left">Mosquito-borne viral encephalitis</td>
</tr>
<tr>
<td align="left">A84</td>
<td align="left">Tick-borne viral encephalitis</td>
</tr>
<tr>
<td align="left">A85</td>
<td align="left">Other viral encephalitis, not elsewhere classified</td>
</tr>
<tr>
<td align="left">A86</td>
<td align="left">Unspecified viral encephalitis</td>
</tr>
<tr>
<td align="left">A87</td>
<td align="left">Viral meningitis</td>
</tr>
<tr>
<td align="left">A88</td>
<td align="left">Other viral infections of central nervous system, not elsewhere classified</td>
</tr>
<tr>
<td align="left">A89</td>
<td align="left">Unspecified viral infection of central nervous system</td>
</tr>
<tr>
<td align="left">A90</td>
<td align="left">Dengue fever [classical dengue]</td>
</tr>
<tr>
<td align="left">A91</td>
<td align="left">Dengue haemorrhagic fever</td>
</tr>
<tr>
<td align="left">A92</td>
<td align="left">Other mosquito-borne viral fevers</td>
</tr>
<tr>
<td align="left">A93</td>
<td align="left">Other arthropod-borne viral fevers, not elsewhere classified</td>
</tr>
<tr>
<td align="left">A94</td>
<td align="left">Unspecified arthropod-borne viral fever</td>
</tr>
<tr>
<td align="left">A95</td>
<td align="left">Yellow fever</td>
</tr>
<tr>
<td align="left">A96</td>
<td align="left">Arenaviral haemorrhagic fever</td>
</tr>
<tr>
<td align="left">A98</td>
<td align="left">Other viral haemorrhagic fevers, not elsewhere classified</td>
</tr>
<tr>
<td align="left">A99</td>
<td align="left">Unspecified viral haemorrhagic fever</td>
</tr>
<tr>
<td align="left">B00</td>
<td align="left">Herpesviral [herpes simplex] infections</td>
</tr>
<tr>
<td align="left">B01</td>
<td align="left">Varicella [chickenpox]</td>
</tr>
<tr>
<td align="left">B02</td>
<td align="left">Zoster [herpes zoster]</td>
</tr>
<tr>
<td align="left">B05</td>
<td align="left">Measles</td>
</tr>
<tr>
<td align="left">B06</td>
<td align="left">Rubella [German measles]</td>
</tr>
<tr>
<td align="left">B07</td>
<td align="left">Viral warts</td>
</tr>
<tr>
<td align="left">B08</td>
<td align="left">Other viral infections characterized by skin and mucous membrane lesions, not elsewhere classified</td>
</tr>
<tr>
<td align="left">B09</td>
<td align="left">Unspecified viral infection characterized by skin and mucous membrane lesions</td>
</tr>
<tr>
<td align="left">B15</td>
<td align="left">Acute hepatitis A</td>
</tr>
<tr>
<td align="left">B16</td>
<td align="left">Acute hepatitis B</td>
</tr>
<tr>
<td align="left">B17</td>
<td align="left">Other acute viral hepatitis</td>
</tr>
<tr>
<td align="left">B19</td>
<td align="left">Unspecified viral hepatitis</td>
</tr>
<tr>
<td align="left">B20.2</td>
<td align="left">HIV disease resulting in cytomegaloviral disease</td>
</tr>
<tr>
<td align="left">B20.3</td>
<td align="left">HIV disease resulting in other viral infections</td>
</tr>
<tr>
<td align="left">B25</td>
<td align="left">Cytomegaloviral disease</td>
</tr>
<tr>
<td align="left">B26</td>
<td align="left">Mumps</td>
</tr>
<tr>
<td align="left">B27</td>
<td align="left">Infectious mononucleosis</td>
</tr>
<tr>
<td align="left">B30</td>
<td align="left">Viral conjunctivitis</td>
</tr>
<tr>
<td align="left">B33</td>
<td align="left">Other viral diseases, not elsewhere classified</td>
</tr>
<tr>
<td align="left">B34</td>
<td align="left">Viral infection of unspecified site</td>
</tr>
<tr>
<td align="left">B91</td>
<td align="left">Sequelae of poliomyelitis</td>
</tr>
<tr>
<td align="left">B94.1</td>
<td align="left">Sequelae of viral encephalitis</td>
</tr>
<tr>
<td align="left">B94.2</td>
<td align="left">Sequelae of viral hepatitis</td>
</tr>
<tr>
<td align="left">B97</td>
<td align="left">Viral agents as the cause of diseases classified to other chapters</td>
</tr>
<tr>
<td align="left">G02.0</td>
<td align="left">Meningitis in viral diseases classified elsewhere</td>
</tr>
<tr>
<td align="left">G04.1</td>
<td align="left">Tropical spastic paraplegia</td>
</tr>
<tr>
<td align="left">G05.1</td>
<td align="left">Encephalitis, myelitis and encephalomyelitis in viral diseases classified elsewhere</td>
</tr>
<tr>
<td align="left">G53.0</td>
<td align="left">Postzoster neuralgia</td>
</tr>
<tr>
<td align="left">H19.1</td>
<td align="left">Herpesviral keratitis and keratoconjunctivitis</td>
</tr>
<tr>
<td align="left">H62.1</td>
<td align="left">Otitis externa in viral diseases classified elsewhere</td>
</tr>
<tr>
<td align="left">H67.1</td>
<td align="left">Otitis media in viral diseases classified elsewhere</td>
</tr>
<tr>
<td align="left">I41.1</td>
<td align="left">Myocarditis in viral diseases classified elsewhere</td>
</tr>
<tr>
<td align="left">J09</td>
<td align="left">Influenza due to identified avian influenza virus</td>
</tr>
<tr>
<td align="left">J10</td>
<td align="left">Influenza due to other identified influenza virus</td>
</tr>
<tr>
<td align="left">J11</td>
<td align="left">Influenza, virus not identified</td>
</tr>
<tr>
<td align="left">J12</td>
<td align="left">Viral pneumonia, not elsewhere classified</td>
</tr>
<tr>
<td align="left">J17.1</td>
<td align="left">Pneumonia in viral diseases classified elsewhere</td>
</tr>
<tr>
<td align="left">J20.3</td>
<td align="left">Acute bronchitis due to coxsackievirus</td>
</tr>
<tr>
<td align="left">J20.4</td>
<td align="left">Acute bronchitis due to parainfluenza virus</td>
</tr>
<tr>
<td align="left">J20.5</td>
<td align="left">Acute bronchitis due to respiratory syncytial virus</td>
</tr>
<tr>
<td align="left">J20.6</td>
<td align="left">Acute bronchitis due to rhinovirus</td>
</tr>
<tr>
<td align="left">J20.7</td>
<td align="left">Acute bronchitis due to echovirus</td>
</tr>
<tr>
<td align="left">J21.0</td>
<td align="left">Acute bronchiolitis due to respiratory syncytial virus</td>
</tr>
<tr>
<td align="left">J21.1</td>
<td align="left">Acute bronchiolitis due to human metapneumovirus</td>
</tr>
<tr>
<td align="left">J21.8</td>
<td align="left">Acute bronchiolitis due to other specified organisms</td>
</tr>
<tr>
<td align="left">J21.9</td>
<td align="left">Acute bronchiolitis, unspecified</td>
</tr>
<tr>
<td align="left">M01.4</td>
<td align="left">Rubella arthritis</td>
</tr>
<tr>
<td align="left">M01.5</td>
<td align="left">Arthritis in other viral diseases classified elsewhere</td>
</tr>
<tr>
<td align="left">M89.6</td>
<td align="left">Osteopathy after poliomyelitis</td>
</tr>
<tr>
<td align="left">P23.0</td>
<td align="left">Congenital pneumonia due to viral agent</td>
</tr>
<tr>
<td align="left">P35</td>
<td align="left">Congenital viral diseases</td>
</tr>
</tbody>
</table>
<h2>Visual impairment and blindness</h2>
<h4>Implementation</h4>
~~~
At the specified date, a patient is defined as having had Visual impairment and 'Visual impairment and blindness' IF they meet the criteria for any of the following on or before the specified date. The earliest date on which the individual meets any of the following criteria on or before the specified date is defined as the first event date:
Primary care
1. Visual impairment and 'Visual impairment and blindness' diagnosis or history of diagnosis during a consultation
OR
Secondary care
1. ALL diagnoses of Visual impairment and 'Visual impairment and blindness' or history of diagnosis during a hospitalization
~~~
<h4>Primary care (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//primary_care/CPRD_blind.csv'>CPRD_blind.csv</a>)</h4>
<table>
<thead>
<tr>
<th>Read code</th>
<th>Read Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left">1B75.00</td>
<td align="left">Loss of vision</td>
</tr>
<tr>
<td align="left">2B6A.11</td>
<td align="left">O/E - blind R-eye</td>
</tr>
<tr>
<td align="left">2B6B.00</td>
<td align="left">O/E - R-eye completely blind</td>
</tr>
<tr>
<td align="left">2B6S.00</td>
<td align="left">O/E - pinhole R-eye completely blind</td>
</tr>
<tr>
<td align="left">2B7A.11</td>
<td align="left">O/E - blind L-eye</td>
</tr>
<tr>
<td align="left">2B7B.00</td>
<td align="left">O/E - L-eye completely blind</td>
</tr>
<tr>
<td align="left">2B7S.00</td>
<td align="left">O/E - pinhole L-eye completely blind</td>
</tr>
<tr>
<td align="left">2BBo.00</td>
<td align="left">O/E - sight threatening diabetic retinopathy</td>
</tr>
<tr>
<td align="left">2BBr.00</td>
<td align="left">Impaired vision due to diabetic retinopathy</td>
</tr>
<tr>
<td align="left">6688</td>
<td align="left">Registered partially sighted</td>
</tr>
<tr>
<td align="left">6688.11</td>
<td align="left">Registered partially blind</td>
</tr>
<tr>
<td align="left">6689</td>
<td align="left">Registered blind</td>
</tr>
<tr>
<td align="left">6689.11</td>
<td align="left">Registered severely sight impaired</td>
</tr>
<tr>
<td align="left">668D.00</td>
<td align="left">Registered sight impaired</td>
</tr>
<tr>
<td align="left">8F61.00</td>
<td align="left">Blind rehabilitation</td>
</tr>
<tr>
<td align="left">8F62.00</td>
<td align="left">Blind lead dog rehabilitation</td>
</tr>
<tr>
<td align="left">8F6..11</td>
<td align="left">Blind rehabilitation</td>
</tr>
<tr>
<td align="left">8HlE.00</td>
<td align="left">Referral to visual impairment multidisciplinary team</td>
</tr>
<tr>
<td align="left">9m08.00</td>
<td align="left">Excluded from diabetic retinopathy screening as blind</td>
</tr>
<tr>
<td align="left">9NfB.00</td>
<td align="left">Requires deafblind communicator guide</td>
</tr>
<tr>
<td align="left">9NlD.00</td>
<td align="left">Seen by visual impairment teacher</td>
</tr>
<tr>
<td align="left">F404100</td>
<td align="left">Blind hypotensive eye</td>
</tr>
<tr>
<td align="left">F404200</td>
<td align="left">Blind hypertensive eye</td>
</tr>
<tr>
<td align="left">F490000</td>
<td align="left">Unspecified blindness both eyes</td>
</tr>
<tr>
<td align="left">F490100</td>
<td align="left">Both eyes total visual impairment</td>
</tr>
<tr>
<td align="left">F490200</td>
<td align="left">Better eye: near total VI, Lesser eye: unspecified</td>
</tr>
<tr>
<td align="left">F490400</td>
<td align="left">Better eye: near total VI, Lesser eye: near total VI</td>
</tr>
<tr>
<td align="left">F490600</td>
<td align="left">Better eye: profound VI, Lesser eye: total VI</td>
</tr>
<tr>
<td align="left">F490900</td>
<td align="left">Acquired blindness, both eyes</td>
</tr>
<tr>
<td align="left">F490.00</td>
<td align="left">Blindness, both eyes</td>
</tr>
<tr>
<td align="left">F490z00</td>
<td align="left">Blindness both eyes NOS</td>
</tr>
<tr>
<td align="left">F491000</td>
<td align="left">One eye blind, one eye low vision</td>
</tr>
<tr>
<td align="left">F491100</td>
<td align="left">Better eye: severe VI, Lesser eye: blind, unspecified</td>
</tr>
<tr>
<td align="left">F491300</td>
<td align="left">Better eye: severe VI, Lesser eye: near total VI</td>
</tr>
<tr>
<td align="left">F491400</td>
<td align="left">Better eye: severe VI, Lesser eye: profound VI</td>
</tr>
<tr>
<td align="left">F491500</td>
<td align="left">Better eye: moderate VI, Lesser eye: blind, unspecified</td>
</tr>
<tr>
<td align="left">F491700</td>
<td align="left">Better eye: moderate VI, Lesser eye: near total VI</td>
</tr>
<tr>
<td align="left">F491.00</td>
<td align="left">Better eye: low vision, Lesser eye: profound VI</td>
</tr>
<tr>
<td align="left">F491z00</td>
<td align="left">One eye blind, one eye low vision NOS</td>
</tr>
<tr>
<td align="left">F492000</td>
<td align="left">Low vision, both eyes unspecified</td>
</tr>
<tr>
<td align="left">F492200</td>
<td align="left">Better eye: severe VI, Lesser eye: severe VI</td>
</tr>
<tr>
<td align="left">F492300</td>
<td align="left">Better eye: moderate VI, Lesser eye: low vision unspecified</td>
</tr>
<tr>
<td align="left">F492400</td>
<td align="left">Better eye: moderate VI, Lesser eye: severe VI</td>
</tr>
<tr>
<td align="left">F492500</td>
<td align="left">Better eye: moderate VI, Lesser eye: moderate VI</td>
</tr>
<tr>
<td align="left">F492.00</td>
<td align="left">Low vision, both eyes</td>
</tr>
<tr>
<td align="left">F492z00</td>
<td align="left">Low vision, both eyes NOS</td>
</tr>
<tr>
<td align="left">F493.00</td>
<td align="left">Visual loss, both eyes unqualified</td>
</tr>
<tr>
<td align="left">F494.00</td>
<td align="left">Legal blindness USA</td>
</tr>
<tr>
<td align="left">F495000</td>
<td align="left">Blindness, one eye, unspecified</td>
</tr>
<tr>
<td align="left">F495100</td>
<td align="left">Lesser eye: total visual impairment, Better eye: unspecified</td>
</tr>
<tr>
<td align="left">F495200</td>
<td align="left">Lesser eye: total VI, Better eye: near normal vision</td>
</tr>
<tr>
<td align="left">F495300</td>
<td align="left">Lesser eye: total VI, Better eye: normal vision</td>
</tr>
<tr>
<td align="left">F495400</td>
<td align="left">Lesser eye: near total VI, Better eye: unspecified</td>
</tr>
<tr>
<td align="left">F495500</td>
<td align="left">Lesser eye: near total VI, Better eye: near normal vision</td>
</tr>
<tr>
<td align="left">F495600</td>
<td align="left">Lesser eye: near total VI, Better eye: normal vision</td>
</tr>
<tr>
<td align="left">F495800</td>
<td align="left">Lesser eye: profound VI, Better eye: near normal vision</td>
</tr>
<tr>
<td align="left">F495A00</td>
<td align="left">Acquired blindness, one eye</td>
</tr>
<tr>
<td align="left">F495.00</td>
<td align="left">Profound impairment, one eye</td>
</tr>
<tr>
<td align="left">F495z00</td>
<td align="left">Profound impairment one eye NOS</td>
</tr>
<tr>
<td align="left">F496000</td>
<td align="left">Low vision, one eye, unspecified</td>
</tr>
<tr>
<td align="left">F496100</td>
<td align="left">Lesser eye: severe VI, Better eye: unspecified</td>
</tr>
<tr>
<td align="left">F496200</td>
<td align="left">Lesser eye: severe VI, Better eye: near normal vision</td>
</tr>
<tr>
<td align="left">F496300</td>
<td align="left">Lesser eye: severe VI, Better eye: normal vision</td>
</tr>
<tr>
<td align="left">F496400</td>
<td align="left">Lesser eye: moderate VI, Better eye: unspecified</td>
</tr>
<tr>
<td align="left">F496500</td>
<td align="left">Lesser eye: moderate VI, Better eye: near normal vision</td>
</tr>
<tr>
<td align="left">F496600</td>
<td align="left">Lesser eye: moderate VI, Better eye: normal vision</td>
</tr>
<tr>
<td align="left">F496.00</td>
<td align="left">Low vision, one eye</td>
</tr>
<tr>
<td align="left">F496z00</td>
<td align="left">Low vision, one eye NOS</td>
</tr>
<tr>
<td align="left">F497.00</td>
<td align="left">Severe visual impairment, binocular</td>
</tr>
<tr>
<td align="left">F498.00</td>
<td align="left">Moderate visual impairment, binocular</td>
</tr>
<tr>
<td align="left">F499.00</td>
<td align="left">Mild or no visual impairment, binocular</td>
</tr>
<tr>
<td align="left">F49A.00</td>
<td align="left">Blindness, monocular</td>
</tr>
<tr>
<td align="left">F49B.00</td>
<td align="left">Severe visual impairment, monocular</td>
</tr>
<tr>
<td align="left">F49C.00</td>
<td align="left">Moderate visual impairment, monocular</td>
</tr>
<tr>
<td align="left">F49..00</td>
<td align="left">Blindness and low vision</td>
</tr>
<tr>
<td align="left">F49..11</td>
<td align="left">Impaired vision</td>
</tr>
<tr>
<td align="left">F49..13</td>
<td align="left">Partial sight</td>
</tr>
<tr>
<td align="left">F49..14</td>
<td align="left">Sight impaired</td>
</tr>
<tr>
<td align="left">F49y.00</td>
<td align="left">Visual loss, one eye, unqualified</td>
</tr>
<tr>
<td align="left">F49z000</td>
<td align="left">Charles Bonnet syndrome</td>
</tr>
<tr>
<td align="left">F49z.00</td>
<td align="left">Visual loss NOS</td>
</tr>
<tr>
<td align="left">F49z.11</td>
<td align="left">Acquired blindness</td>
</tr>
<tr>
<td align="left">F4H7300</td>
<td align="left">Cortical blindness</td>
</tr>
<tr>
<td align="left">Fy1..00</td>
<td align="left">Combined visual and hearing impairment</td>
</tr>
<tr>
<td align="left">FyuL.00</td>
<td align="left">[X]Visual disturbances and blindness</td>
</tr>
<tr>
<td align="left">SJ0z.11</td>
<td align="left">Blindness - traumatic - NOS</td>
</tr>
<tr>
<td align="left">Z961.00</td>
<td align="left">Provision of guide help for visual and hearing impairment</td>
</tr>
<tr>
<td align="left">Z962.00</td>
<td align="left">Provision of communicator for visual and hearing impairment</td>
</tr>
<tr>
<td align="left">Z96..00</td>
<td align="left">Provision for visual and hearing impairment</td>
</tr>
<tr>
<td align="left">ZK74.00</td>
<td align="left">Issue of local authority blind registration</td>
</tr>
<tr>
<td align="left">ZN56800</td>
<td align="left">Blind telephone user</td>
</tr>
<tr>
<td align="left">ZN56A00</td>
<td align="left">Deaf-blind telephone user</td>
</tr>
<tr>
<td align="left">ZRhO.00</td>
<td align="left">Reynell Zinkin language scale for the visually impaired</td>
</tr>
<tr>
<td align="left">ZRr6.00</td>
<td align="left">Vineland maturity scales adapted for the blind</td>
</tr>
<tr>
<td align="left">ZV41000</td>
<td align="left">[V]Problems with sight</td>
</tr>
</tbody>
</table>
<h4>Secondary care diagnoses (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//secondary_care/ICD_blind.csv'>ICD_blind.csv</a>)</h4>
<table>
<thead>
<tr>
<th>ICD-10 code</th>
<th>ICD-10 Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left">H54</td>
<td align="left">Visual impairment including blindness (binocular or monocular)</td>
</tr>
</tbody>
</table>
<h2>Vitamin B12 deficiency anaemia</h2>
<h4>Implementation</h4>
~~~
At the specified date, a patient is defined as having had 'Vitamin B12 deficiency anaemia' IF they meet the criteria for any of the following on or before the specified date. The earliest date on which the individual meets any of the following criteria on or before the specified date is defined as the first event date:
Primary care
1. 'Vitamin B12 deficiency anaemia' diagnosis or history of diagnosis during a consultation
OR
Secondary care (ICD10)
1. ALL diagnoses of 'Vitamin B12 deficiency anaemia' or history of diagnosis during a hospitalization
~~~
<h4>Primary care (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//primary_care/CPRD_b12_def.csv'>CPRD_b12_def.csv</a>)</h4>
<table>
<thead>
<tr>
<th>Read code</th>
<th>Read Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="right">1452</td>
<td align="left">H/O: Anaemia vit.B12 deficient</td>
</tr>
<tr>
<td align="left">66E1.00</td>
<td align="left">B12 defic. initial assessment</td>
</tr>
<tr>
<td align="left">66E2.00</td>
<td align="left">B12 defic.follow-up assessment</td>
</tr>
<tr>
<td align="left">66E3.00</td>
<td align="left">B12 injections started</td>
</tr>
<tr>
<td align="left">66E4.00</td>
<td align="left">B12 injections - at home</td>
</tr>
<tr>
<td align="left">66E5.00</td>
<td align="left">B12 injections - at surgery</td>
</tr>
<tr>
<td align="left">66E6.00</td>
<td align="left">Reticulcytosis after B12</td>
</tr>
<tr>
<td align="left">66E..00</td>
<td align="left">B12 deficiency monitoring</td>
</tr>
<tr>
<td align="left">66E7.00</td>
<td align="left">B12 def.-dubious diag.criteria</td>
</tr>
<tr>
<td align="left">66E8.00</td>
<td align="left">B12 injections stopped</td>
</tr>
<tr>
<td align="left">66EZ.00</td>
<td align="left">B12 defic. monitoring NOS</td>
</tr>
<tr>
<td align="left">C262100</td>
<td align="left">Vitamin B12 deficiency</td>
</tr>
<tr>
<td align="left">D010.00</td>
<td align="left">Pernicious anaemia</td>
</tr>
<tr>
<td align="left">D010.11</td>
<td align="left">Addison's anaemia</td>
</tr>
<tr>
<td align="left">D010.12</td>
<td align="left">Biermer's congenital pernicious anaemia</td>
</tr>
<tr>
<td align="left">D010.13</td>
<td align="left">Congenital deficiency of intrinsic factor</td>
</tr>
<tr>
<td align="left">D011000</td>
<td align="left">Vitamin B12 deficiency anaemia due to dietary causes</td>
</tr>
<tr>
<td align="left">D011011</td>
<td align="left">Imerslund - Grasbeck syndrome</td>
</tr>
<tr>
<td align="left">D011013</td>
<td align="left">Vegan's anaemia</td>
</tr>
<tr>
<td align="left">D011100</td>
<td align="left">Vit B12 defic anaemia due to malabsorption with proteinuria</td>
</tr>
<tr>
<td align="left">D011200</td>
<td align="left">Transcobalamin II deficiency</td>
</tr>
<tr>
<td align="left">D011.00</td>
<td align="left">Other vitamin B12 deficiency anaemias</td>
</tr>
<tr>
<td align="left">D011.11</td>
<td align="left">Vitamin B12 deficiency anaemia</td>
</tr>
<tr>
<td align="left">D011X00</td>
<td align="left">Vitamin B12 deficiency anaemia, unspecified</td>
</tr>
<tr>
<td align="left">D011z00</td>
<td align="left">Other vitamin B12 deficiency anaemia NOS</td>
</tr>
<tr>
<td align="left">D013000</td>
<td align="left">Combined B12 and folate deficiency anaemia</td>
</tr>
<tr>
<td align="left">Dyu0100</td>
<td align="left">[X]Other dietary vitamin B12 deficiency anaemia</td>
</tr>
<tr>
<td align="left">Dyu0200</td>
<td align="left">[X]Other vitamin B12 deficiency anaemias</td>
</tr>
<tr>
<td align="left">Dyu0600</td>
<td align="left">[X]Vitamin B12 deficiency anaemia, unspecified</td>
</tr>
<tr>
<td align="left">F11x600</td>
<td align="left">Cerebral degeneration due to vitamin B12 deficiency</td>
</tr>
<tr>
<td align="left">F162.00</td>
<td align="left">Subacute combined degeneration of spinal cord</td>
</tr>
<tr>
<td align="left">F381500</td>
<td align="left">Myasthenic syndrome due to pernicious anaemia</td>
</tr>
</tbody>
</table>
<h4>Secondary care diagnoses (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//secondary_care/ICD_b12_def.csv'>ICD_b12_def.csv</a>)</h4>
<table>
<thead>
<tr>
<th>ICD-10 code</th>
<th>ICD-10 Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left">D51</td>
<td align="left">Vitamin B12 deficiency anaemia</td>
</tr>
</tbody>
</table>
<h2>Vitiligo</h2>
<h4>Implementation</h4>
~~~
At the specified date, a patient is defined as having had 'Vitiligo' IF they meet the criteria for any of the following on or before the specified date. The earliest date on which the individual meets any of the following criteria on or before the specified date is defined as the first event date:
Primary care
1. 'Vitiligo' diagnosis or history of diagnosis during a consultation
OR
Secondary care (ICD10)
1. ALL diagnoses of 'Vitiligo' or history of diagnosis during a hospitalization
~~~
<h4>Primary care (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//primary_care/CPRD_vitiligo.csv'>CPRD_vitiligo.csv</a>)</h4>
<table>
<thead>
<tr>
<th>Read code</th>
<th>Read Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left">F4E5311</td>
<td align="left">Vitiligo of eyelid</td>
</tr>
<tr>
<td align="left">M295100</td>
<td align="left">Vitiligo</td>
</tr>
</tbody>
</table>
<h4>Secondary care diagnoses (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//secondary_care/ICD_vitiligo.csv'>ICD_vitiligo.csv</a>)</h4>
<table>
<thead>
<tr>
<th>ICD-10 code</th>
<th>ICD-10 Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left">L80</td>
<td align="left">Vitiligo</td>
</tr>
</tbody>
</table>
<h2>Volvulus</h2>
<h4>Implementation</h4>
~~~
At the specified date, a patient is defined as having had 'Volvulus' IF they meet the criteria for any of the following on or before the specified date. The earliest date on which the individual meets any of the following criteria on or before the specified date is defined as the first event date:
Primary care
1. 'Volvulus' diagnosis or history of diagnosis or procedure during a consultation
OR
Secondary care
1. ALL diagnoses of 'Volvulus' or history of diagnosis during a hospitalization
OR
Secondary care (OPCS4)
1. ALL procedures for 'Volvulus' during a hospitalization
~~~
<h4>Primary care (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//primary_care/CPRD_volvulus.csv'>CPRD_volvulus.csv</a>)</h4>
<table>
<thead>
<tr>
<th>Read code</th>
<th>Read Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left">771D100</td>
<td align="left">Open reduction of volvulus of caecum</td>
</tr>
<tr>
<td align="left">771D200</td>
<td align="left">Open reduction of volvulus of sigmoid colon</td>
</tr>
<tr>
<td align="left">771D300</td>
<td align="left">Open reduction of volvulus of colon NEC</td>
</tr>
<tr>
<td align="left">771R200</td>
<td align="left">Passage of flatus tube to reduce volvulus of sigmoid colon</td>
</tr>
<tr>
<td align="left">J173200</td>
<td align="left">Volvulus of duodenum</td>
</tr>
<tr>
<td align="left">J502100</td>
<td align="left">Volvulus of the small bowel</td>
</tr>
<tr>
<td align="left">J502200</td>
<td align="left">Volvulus of the ileocaecum</td>
</tr>
<tr>
<td align="left">J502300</td>
<td align="left">Volvulus of the sigmoid colon</td>
</tr>
<tr>
<td align="left">J502.00</td>
<td align="left">Volvulus</td>
</tr>
<tr>
<td align="left">J502.11</td>
<td align="left">Torsion of bowel</td>
</tr>
<tr>
<td align="left">J502z00</td>
<td align="left">Volvulus NOS</td>
</tr>
</tbody>
</table>
<h4>Secondary care diagnoses (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//secondary_care/ICD_volvulus.csv'>ICD_volvulus.csv</a>)</h4>
<table>
<thead>
<tr>
<th>ICD-10 code</th>
<th>ICD-10 Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left">K56.2</td>
<td align="left">Volvulus</td>
</tr>
</tbody>
</table>
<h4>Secondary care procedures (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//secondary_care/OPCS_volvulus.csv'>OPCS_volvulus.csv</a>)</h4>
<table>
<thead>
<tr>
<th>OPCS-4 code</th>
<th>OPCS-4 Term</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left">H17.2</td>
<td align="left">Open reduction of volvulus of caecum</td>
</tr>
<tr>
<td align="left">H17.3</td>
<td align="left">Open reduction of volvulus of sigmoid colon</td>
</tr>
<tr>
<td align="left">H17.4</td>
<td align="left">Open reduction of volvulus of colon NEC</td>
</tr>
<tr>
<td align="left">H30.3</td>
<td align="left">Passage of flatus tube to reduce volvulus of sigmoid colon</td>
</tr>
</tbody>
</table>
File generated: 2019-11-25 16:04:13.501923