! This sample v3s pipeline file examplifies how to analyze data from RBDS study for one subject

! The model mdh file and the c3d files have to be located in the same directory.

File_New

;

! Choosing the file directory

Set_Pipeline_Parameter_To_Folder_Path

/PARAMETER_NAME=FOLDER

/PARAMETER_VALUE=

! /PARAMETER_VALUE_SEARCH_FOR=

! /PARAMETER_VALUE_REPLACE_WITH=

! /PARAMETER_VALUE_APPEND=

;

Create_Hybrid_Model

/CALIBRATION_FILE=::FOLDER&RBDS001static.c3d

! /RANGE=ALL_FRAMES

;

Apply_Model_Template

/MODEL_TEMPLATE=::FOLDER&RBDSmodelV3D.mdh

/CALIBRATION_FILE=::FOLDER&RBDS001static.c3d

;

Set_Subject_Mass

/CALIBRATION_FILE=::FOLDER&RBDS001static.c3d

/WEIGHT=62

;

Set_Subject_Height

/CALIBRATION_FILE=::FOLDER&RBDS001static.c3d

/HEIGHT=181

;

! Update the model

Build_Model

/CALIBRATION_FILE=::FOLDER&RBDS001static.c3d

! /REBUILD_ALL_MODELS=FALSE 

;

File_Open

/FILE_NAME=::FOLDER&RBDS001runT*.c3d

;

Assign_Model_File

/CALIBRATION_FILE=::FOLDER&RBDS001static.c3d

/MOTION_FILE_NAMES=::FOLDER&RBDS001runT*.c3d

! /REMOVE_EXISTING_ASSIGNMENTS=FALSE

;

Assign_Tags_To_Files

/MOTION_FILE_NAMES=::FOLDER&RBDS001runT25.c3d

/TAGS=RUN25

;

Assign_Tags_To_Files

/MOTION_FILE_NAMES=::FOLDER&RBDS001runT35.c3d

/TAGS=RUN35

;

Assign_Tags_To_Files

/MOTION_FILE_NAMES=::FOLDER&RBDS001runT45.c3d

/TAGS=RUN45

;

Event_Delete

/EVENT_NAME=LHS+LON+LOFF+LTO+RON+RHS+ROFF+RTO

! /EVENT_SEQUENCE=

! /EXCLUDE_EVENTS=

! /TIME=

;

Interpolate

/SIGNAL_TYPES=TARGET

! /SIGNAL_NAMES=

! /SIGNAL_FOLDER=ORIGINAL

! /RESULT_SUFFIX=

! /RESULT_FOLDER=PROCESSED

/MAXIMUM_GAP=20

! /NUM_FIT=3

! /POLYNOMIAL_ORDER=3

;

Lowpass_Filter

/SIGNAL_TYPES=ANALOG

! /SIGNAL_NAMES=

/SIGNAL_FOLDER=ORIGINAL

! /RESULT_SUFFIX=

/RESULT_FOLDER=PROCESSED

! /FILTER_CLASS=BUTTERWORTH

/FREQUENCY_CUTOFF=10

! /NUM_REFLECTED=0

! /TOTAL_BUFFER_SIZE=0

! /NUM_BIDIRECTIONAL_PASSES=1

;

Set_Force_Platform_Threshold

/THRESHOLD=20

! /SET_AS_DEFAULT=FALSE

;

Set_Use_Processed_Analog

/USE_PROCESSED=TRUE

;

Lowpass_Filter

/SIGNAL_TYPES=TARGET

! /SIGNAL_NAMES=

/SIGNAL_FOLDER=PROCESSED

! /RESULT_SUFFIX=

/RESULT_FOLDER=PROCESSED

! /FILTER_CLASS=BUTTERWORTH

/FREQUENCY_CUTOFF=10

! /NUM_REFLECTED=6

! /TOTAL_BUFFER_SIZE=6

! /NUM_BIDIRECTIONAL_PASSES=1

;

Recalc

;

Automatic_Gait_Events

! /SELECT_X=FALSE

! /SELECT_Y=FALSE

/SELECT_Z=TRUE

! /FRAME_WINDOW=8

/USE_TPR=TRUE

;

! Calculate Angular Kinematics

Compute_Model_Based_Data

/RESULT_NAME=R Hip Angle

/FUNCTION=JOINT_ANGLE

/SEGMENT=RTH

/REFERENCE_SEGMENT=RPV

/RESOLUTION_COORDINATE_SYSTEM=

! /USE_CARDAN_SEQUENCE=FALSE

! /NORMALIZATION=FALSE

! /NORMALIZATION_METHOD=FALSE

! /NORMALIZATION_METRIC=

! /NEGATEX=FALSE

! /NEGATEY=FALSE

! /NEGATEZ=FALSE

/AXIS1=Z

/AXIS2=X

/AXIS3=Y

! /TREADMILL_DATA=FALSE 

! /TREADMILL_DIRECTION=UNIT_VECTOR(0,1,0)

! /TREADMILL_SPEEED=

;

Compute_Model_Based_Data

/RESULT_NAME=L Hip Angle

/FUNCTION=JOINT_ANGLE

/SEGMENT=LTH

/REFERENCE_SEGMENT=RPV

/RESOLUTION_COORDINATE_SYSTEM=

! /USE_CARDAN_SEQUENCE=FALSE

! /NORMALIZATION=FALSE

! /NORMALIZATION_METHOD=FALSE

! /NORMALIZATION_METRIC=

/NEGATEX=TRUE

/NEGATEY=TRUE

! /NEGATEZ=FALSE

/AXIS1=Z

/AXIS2=X

/AXIS3=Y

! /TREADMILL_DATA=FALSE 

! /TREADMILL_DIRECTION=UNIT_VECTOR(0,1,0)

! /TREADMILL_SPEEED=

;

Compute_Model_Based_Data

/RESULT_NAME=R Knee Angle

/FUNCTION=JOINT_ANGLE

/SEGMENT=RSK

/REFERENCE_SEGMENT=RTH

/RESOLUTION_COORDINATE_SYSTEM=

! /USE_CARDAN_SEQUENCE=FALSE

! /NORMALIZATION=FALSE

! /NORMALIZATION_METHOD=FALSE

! /NORMALIZATION_METRIC=

! /NEGATEX=FALSE

! /NEGATEY=FALSE

/NEGATEZ=TRUE

/AXIS1=Z

/AXIS2=X

/AXIS3=Y

! /TREADMILL_DATA=FALSE 

! /TREADMILL_DIRECTION=UNIT_VECTOR(0,1,0)

! /TREADMILL_SPEEED=

;

Compute_Model_Based_Data

/RESULT_NAME=L Knee Angle

/FUNCTION=JOINT_ANGLE

/SEGMENT=LSK

/REFERENCE_SEGMENT=LTH

/RESOLUTION_COORDINATE_SYSTEM=

! /USE_CARDAN_SEQUENCE=FALSE

! /NORMALIZATION=FALSE

! /NORMALIZATION_METHOD=FALSE

! /NORMALIZATION_METRIC=

/NEGATEX=TRUE

/NEGATEY=TRUE

/NEGATEZ=TRUE

/AXIS1=Z

/AXIS2=X

/AXIS3=Y

! /TREADMILL_DATA=FALSE 

! /TREADMILL_DIRECTION=UNIT_VECTOR(0,1,0)

! /TREADMILL_SPEEED=

;

Compute_Model_Based_Data

/RESULT_NAME=Right Ankle Angle

/FUNCTION=JOINT_ANGLE

/SEGMENT=Right Virtual Foot

/REFERENCE_SEGMENT=RSK

/RESOLUTION_COORDINATE_SYSTEM=

! /USE_CARDAN_SEQUENCE=FALSE

! /NORMALIZATION=FALSE

! /NORMALIZATION_METHOD=FALSE

! /NORMALIZATION_METRIC=

! /NEGATEX=FALSE

! /NEGATEY=FALSE

! /NEGATEZ=FALSE

/AXIS1=Z

/AXIS2=X

/AXIS3=Y

! /TREADMILL_DATA=FALSE 

! /TREADMILL_DIRECTION=UNIT_VECTOR(0,1,0)

! /TREADMILL_SPEEED=

;

! To measure INV/EV of the ankle

Compute_Model_Based_Data

/RESULT_NAME=Right Ankle Angle 2

/FUNCTION=JOINT_ANGLE

/SEGMENT=Right Foot InvEv

/REFERENCE_SEGMENT=RSK

/RESOLUTION_COORDINATE_SYSTEM=

! /USE_CARDAN_SEQUENCE=FALSE

! /NORMALIZATION=FALSE

! /NORMALIZATION_METHOD=FALSE

! /NORMALIZATION_METRIC=

! /NEGATEX=FALSE

! /NEGATEY=FALSE

! /NEGATEZ=FALSE

/AXIS1=Z

/AXIS2=X

/AXIS3=Y

! /TREADMILL_DATA=FALSE 

! /TREADMILL_DIRECTION=UNIT_VECTOR(0,1,0)

! /TREADMILL_SPEEED=

;

Compute_Model_Based_Data

/RESULT_NAME=Left Ankle Angle

/FUNCTION=JOINT_ANGLE

/SEGMENT=Left Virtual Foot

/REFERENCE_SEGMENT=LSK

/RESOLUTION_COORDINATE_SYSTEM=

! /USE_CARDAN_SEQUENCE=FALSE

! /NORMALIZATION=FALSE

! /NORMALIZATION_METHOD=FALSE

! /NORMALIZATION_METRIC=

/NEGATEX=TRUE

/NEGATEY=TRUE

! /NEGATEZ=FALSE

/AXIS1=Z

/AXIS2=X

/AXIS3=Y

! /TREADMILL_DATA=FALSE 

! /TREADMILL_DIRECTION=UNIT_VECTOR(0,1,0)

! /TREADMILL_SPEEED=

;

! To measure INV/EV of the ankle

Compute_Model_Based_Data

/RESULT_NAME=Left Ankle Angle 2

/FUNCTION=JOINT_ANGLE

/SEGMENT=left Foot InvEv

/REFERENCE_SEGMENT=LSK

/RESOLUTION_COORDINATE_SYSTEM=

! /USE_CARDAN_SEQUENCE=FALSE

! /NORMALIZATION=FALSE

! /NORMALIZATION_METHOD=FALSE

! /NORMALIZATION_METRIC=

/NEGATEX=TRUE

/NEGATEY=TRUE

! /NEGATEZ=FALSE

/AXIS1=Z

/AXIS2=X

/AXIS3=Y

! /TREADMILL_DATA=FALSE 

! /TREADMILL_DIRECTION=UNIT_VECTOR(0,1,0)

! /TREADMILL_SPEEED=

;

Compute_Model_Based_Data

/RESULT_NAME=RGRF

/FUNCTION=GRF_DATA

/SEGMENT=RFT

/REFERENCE_SEGMENT=

! /RESOLUTION_COORDINATE_SYSTEM=LAB

! /USE_CARDAN_SEQUENCE=FALSE

/NORMALIZATION=TRUE

/NORMALIZATION_METHOD=NORMALIZE_TO_LOCAL_METRIC

/NORMALIZATION_METRIC=MASS

! /NEGATEX=FALSE

! /NEGATEY=FALSE

/NEGATEZ=TRUE

/AXIS1=Z

/AXIS2=X

/AXIS3=Y

;

Compute_Model_Based_Data

/RESULT_NAME=LGRF

/FUNCTION=GRF_DATA

/SEGMENT=LFT

/REFERENCE_SEGMENT=

! /RESOLUTION_COORDINATE_SYSTEM=LAB

! /USE_CARDAN_SEQUENCE=FALSE

/NORMALIZATION=TRUE

/NORMALIZATION_METHOD=NORMALIZE_TO_LOCAL_METRIC

/NORMALIZATION_METRIC=MASS

! /NEGATEX=FALSE

! /NEGATEY=FALSE

! /NEGATEZ=FALSE

/AXIS1=Z

/AXIS2=X

/AXIS3=Y

;

Compute_Model_Based_Data

/RESULT_NAME=Right Hip Moment

/FUNCTION=JOINT_MOMENT

/SEGMENT=RTH

/REFERENCE_SEGMENT=RPV

/RESOLUTION_COORDINATE_SYSTEM=RPV

/USE_CARDAN_SEQUENCE=TRUE

/NORMALIZATION=TRUE

/NORMALIZATION_METHOD=DEFAULT_NORMALIZATION

! /NORMALIZATION_METRIC=

/NEGATEX=TRUE

/NEGATEY=TRUE

! /NEGATEZ=FALSE

/AXIS1=Z

/AXIS2=X

/AXIS3=Y

! /TREADMILL_DATA=FALSE 

! /TREADMILL_DIRECTION=UNIT_VECTOR(0,1,0)

! /TREADMILL_SPEEED=

;

Compute_Model_Based_Data

/RESULT_NAME=Left Hip Moment

/FUNCTION=JOINT_MOMENT

/SEGMENT=LTH

/REFERENCE_SEGMENT=RPV

/RESOLUTION_COORDINATE_SYSTEM=RPV

/USE_CARDAN_SEQUENCE=TRUE

/NORMALIZATION=TRUE

/NORMALIZATION_METHOD=DEFAULT_NORMALIZATION

! /NORMALIZATION_METRIC=

! /NEGATEX=FALSE

! /NEGATEY=FALSE

! /NEGATEZ=FALSE

/AXIS1=Z

/AXIS2=X

/AXIS3=Y

! /TREADMILL_DATA=FALSE 

! /TREADMILL_DIRECTION=UNIT_VECTOR(0,1,0)

! /TREADMILL_SPEEED=

;

Compute_Model_Based_Data

/RESULT_NAME=Right Knee Moment

/FUNCTION=JOINT_MOMENT

/SEGMENT=RSK

/REFERENCE_SEGMENT=RTH

/RESOLUTION_COORDINATE_SYSTEM=RTH

/USE_CARDAN_SEQUENCE=TRUE

/NORMALIZATION=TRUE

/NORMALIZATION_METHOD=DEFAULT_NORMALIZATION

! /NORMALIZATION_METRIC=

/NEGATEX=TRUE

/NEGATEY=TRUE

! /NEGATEZ=FALSE

/AXIS1=Z

/AXIS2=X

/AXIS3=Y

! /TREADMILL_DATA=FALSE 

! /TREADMILL_DIRECTION=UNIT_VECTOR(0,1,0)

! /TREADMILL_SPEEED=

;

Compute_Model_Based_Data

/RESULT_NAME=Left Knee Moment

/FUNCTION=JOINT_MOMENT

/SEGMENT=LSK

/REFERENCE_SEGMENT=LTH

/RESOLUTION_COORDINATE_SYSTEM=LTH

/USE_CARDAN_SEQUENCE=TRUE

/NORMALIZATION=TRUE

/NORMALIZATION_METHOD=DEFAULT_NORMALIZATION

! /NORMALIZATION_METRIC=

! /NEGATEX=FALSE

! /NEGATEY=FALSE

! /NEGATEZ=FALSE

/AXIS1=Z

/AXIS2=X

/AXIS3=Y

! /TREADMILL_DATA=FALSE 

! /TREADMILL_DIRECTION=UNIT_VECTOR(0,1,0)

! /TREADMILL_SPEEED=

;

Compute_Model_Based_Data

/RESULT_NAME=Right Ankle Moment

/FUNCTION=JOINT_MOMENT

/SEGMENT=RFT

/REFERENCE_SEGMENT=RSK

/RESOLUTION_COORDINATE_SYSTEM=RSK

/USE_CARDAN_SEQUENCE=TRUE

/NORMALIZATION=TRUE

/NORMALIZATION_METHOD=DEFAULT_NORMALIZATION

! /NORMALIZATION_METRIC=

/NEGATEX=TRUE

/NEGATEY=TRUE

/NEGATEZ=TRUE

/AXIS1=Z

/AXIS2=X

/AXIS3=Y

! /TREADMILL_DATA=FALSE 

! /TREADMILL_DIRECTION=UNIT_VECTOR(0,1,0)

! /TREADMILL_SPEEED=

;

Compute_Model_Based_Data

/RESULT_NAME=Left Ankle Moment

/FUNCTION=JOINT_MOMENT

/SEGMENT=LFT

/REFERENCE_SEGMENT=LSK

/RESOLUTION_COORDINATE_SYSTEM=LSK

/USE_CARDAN_SEQUENCE=TRUE

/NORMALIZATION=TRUE

/NORMALIZATION_METHOD=DEFAULT_NORMALIZATION

! /NORMALIZATION_METRIC=

! /NEGATEX=FALSE

! /NEGATEY=FALSE

/NEGATEZ=TRUE

/AXIS1=Z

/AXIS2=X

/AXIS3=Y

;

Compute_Model_Based_Data

/RESULT_NAME=Right Ankle Power

/FUNCTION=JOINT_POWER_SCALAR

/SEGMENT=RFT

/REFERENCE_SEGMENT=

/RESOLUTION_COORDINATE_SYSTEM=

! /USE_CARDAN_SEQUENCE=FALSE

/NORMALIZATION=TRUE

/NORMALIZATION_METHOD=DEFAULT_NORMALIZATION

! /NORMALIZATION_METRIC=

! /NEGATEX=FALSE

! /NEGATEY=FALSE

! /NEGATEZ=FALSE

! /AXIS1=X

! /AXIS2=Y

! /AXIS3=Z

;

Compute_Model_Based_Data

/RESULT_NAME=Right Knee Power

/FUNCTION=JOINT_POWER_SCALAR

/SEGMENT=RSK

/REFERENCE_SEGMENT=

/RESOLUTION_COORDINATE_SYSTEM=

! /USE_CARDAN_SEQUENCE=FALSE

/NORMALIZATION=TRUE

/NORMALIZATION_METHOD=DEFAULT_NORMALIZATION

! /NORMALIZATION_METRIC=

! /NEGATEX=FALSE

! /NEGATEY=FALSE

! /NEGATEZ=FALSE

! /AXIS1=X

! /AXIS2=Y

! /AXIS3=Z

;

Compute_Model_Based_Data

/RESULT_NAME=Right Hip Power

/FUNCTION=JOINT_POWER_SCALAR

/SEGMENT=RTH

/REFERENCE_SEGMENT=

/RESOLUTION_COORDINATE_SYSTEM=

! /USE_CARDAN_SEQUENCE=FALSE

/NORMALIZATION=TRUE

/NORMALIZATION_METHOD=DEFAULT_NORMALIZATION

! /NORMALIZATION_METRIC=

! /NEGATEX=FALSE

! /NEGATEY=FALSE

! /NEGATEZ=FALSE

! /AXIS1=X

! /AXIS2=Y

! /AXIS3=Z

;

Compute_Model_Based_Data

/RESULT_NAME=Left Ankle Power

/FUNCTION=JOINT_POWER_SCALAR

/SEGMENT=LFT

/REFERENCE_SEGMENT=

/RESOLUTION_COORDINATE_SYSTEM=

! /USE_CARDAN_SEQUENCE=FALSE

/NORMALIZATION=TRUE

/NORMALIZATION_METHOD=DEFAULT_NORMALIZATION

! /NORMALIZATION_METRIC=

! /NEGATEX=FALSE

! /NEGATEY=FALSE

! /NEGATEZ=FALSE

! /AXIS1=X

! /AXIS2=Y

! /AXIS3=Z

;

Compute_Model_Based_Data

/RESULT_NAME=Left Knee Power

/FUNCTION=JOINT_POWER_SCALAR

/SEGMENT=LSK

/REFERENCE_SEGMENT=

/RESOLUTION_COORDINATE_SYSTEM=

! /USE_CARDAN_SEQUENCE=FALSE

/NORMALIZATION=TRUE

/NORMALIZATION_METHOD=DEFAULT_NORMALIZATION

! /NORMALIZATION_METRIC=

! /NEGATEX=FALSE

! /NEGATEY=FALSE

! /NEGATEZ=FALSE

! /AXIS1=X

! /AXIS2=Y

! /AXIS3=Z

;

Compute_Model_Based_Data

/RESULT_NAME=Left Hip Power

/FUNCTION=JOINT_POWER_SCALAR

/SEGMENT=LTH

/REFERENCE_SEGMENT=

/RESOLUTION_COORDINATE_SYSTEM=

! /USE_CARDAN_SEQUENCE=FALSE

/NORMALIZATION=TRUE

/NORMALIZATION_METHOD=DEFAULT_NORMALIZATION

! /NORMALIZATION_METRIC=

! /NEGATEX=FALSE

! /NEGATEY=FALSE

! /NEGATEZ=FALSE

! /AXIS1=X

! /AXIS2=Y

! /AXIS3=Z

;

For_Each

/Iteration_Parameter_Name=TAG_NAMES

/Items=RUN25+RUN35+RUN45

;

Select_Active_File

/FILE_NAME=::TAG_NAMES

;

Metric_Compute_Temporal_Distance

/GLOBAL_RESULT_METRIC_FOLDER=GLOBAL_RESULT_METRIC_FOLDER_&::TAG_NAMES

! /CALCULATE_PER_FILE=FALSE

! /CALCULATE_PER_ALL_CMO_GLOBALS=FALSE

! /CREATE_ALL_INSTANCES=FALSE

! /RIGHT_FOOT_LOCATION=KINETIC_KINEMATIC::RFT::ProxEndPos

! /LEFT_FOOT_LOCATION=KINETIC_KINEMATIC::LFT::ProxEndPos

! /HEIGHT=METRIC::PROCESSED::HEIGHT

/RHS_EVENT=RON

/LHS_EVENT=LON

/RTO_EVENT=ROFF

/LTO_EVENT=LOFF

/STRICT_EVENT_SEQUENCE_VALIDATION=TRUE

! /INCLUDE_EVENTS=

! /EXCLUDE_EVENTS=

! /EVENT_INSTANCE=0

! /COMPUTE_SPEED=TRUE

! /COMPUTE_STATURES_PER_SECOND=TRUE

! /COMPUTE_STRIDE_WIDTH=TRUE

! /COMPUTE_STRIDE_LENGTH=TRUE

! /COMPUTE_CYCLE_TIME=TRUE

! /COMPUTE_STEP_LENGTH=TRUE

! /COMPUTE_STEP_TIME=TRUE

! /COMPUTE_STANCE_TIME=TRUE

! /COMPUTE_SWING_TIME=TRUE

! /COMPUTE_STEPS_PER_MINUTE=TRUE

! /COMPUTE_STRIDES_PER_MINUTE=TRUE

! /COMPUTE_DOUBLE_LIMB_SUPPORT_TIME=FALSE

! /COMPUTE_RIGHT_INITIAL_DOUBLE_LIMB_SUPPORT_TIME=FALSE

! /COMPUTE_RIGHT_TERMINAL_DOUBLE_LIMB_SUPPORT_TIME=TRUE

/TREADMILL_SPEED=2.5

! /LEFT_TREADMILL_SPEED=

/TREADMILL_DIRECTION=UNIT_VECTOR(1,0,0)

;

End_For_Each

/Iteration_Parameter_Name=TAG_NAMES

;

File_Save_As

/FILE_NAME=::FOLDER&RBDS001.cmo

;

Exit_Workspace

;