csa_t1:
- sub-balgrist01  # Motion artifact
- sub-beijingGE04  # Motion artifact
- sub-mniS06  # Motion artifact
- sub-mountSinai03  # T2w was re-acquired (subject repositioning)
- sub-oxfordFmrib04  # T1w scan is not aligned with other contrasts (subject repositioning)
- sub-pavia04  # Motion artifact
- sub-perform06  # Motion artifact
csa_t2:
- beijingVerio  # Site did not respect parameters (TR=2, FA=180)
- sub-oxfordFmrib04  # T1w scan is not aligned with other contrasts (subject repositioning)
- sub-pavia04  # Motion artifact
- sub-mountSinai03  # T2w was re-acquired (subject repositioning)
csa_gm:
- sub-amu03  # Motion artifact
- sub-fslAchieva04  # Motion artifact
- sub-vuiisIngenia04  # Motion artifact
- sub-vuiisIngenia05  # Motion artifact
mtr:
- stanford  # Used different TR
- fslAchieva  # Used different TR and inconsistent within site
- sub-beijingPrisma04  # different coil, shim value and FOV placement between MTon and MToff
- sub-geneva02  # FOV positioning changed between MTon and MToff
- sub-oxfordFmrib04  # T1w scan is not aligned with other contrasts (subject repositioning)
mtsat:
- fslAchieva  # Used different TR and inconsistent within site
- sub-fslAchieva03  # Poor data quality
- sub-fslAchieva04  # Poor data quality
- sub-fslAchieva05  # Poor data quality
- sub-fslAchieva06  # Poor data quality
- sub-beijingPrisma04  # different coil, shim value and FOV placement between MTon and MToff
- sub-geneva02  # FOV positioning changed between MTon and MToff
- sub-oxfordFmrib04  # T1w scan is not aligned with other contrasts (subject repositioning)
t1:
- fslAchieva  # Used different TR and inconsistent within site
- sub-fslAchieva03  # Poor data quality
- sub-fslAchieva04  # Poor data quality
- sub-fslAchieva05  # Poor data quality
- sub-fslAchieva06  # Poor data quality
- sub-beijingPrisma04  # different coil, shim value and FOV placement between MTon and MToff
- sub-geneva02  # FOV positioning changed between MTon and MToff
- sub-oxfordFmrib04  # T1w scan is not aligned with other contrasts (subject repositioning)
dti_fa:
- sub-beijingPrisma03  # wrong FOV placement
- sub-mountSinai03  # T2w was re-acquired (hence wrong T2w -> DWI registration)
- sub-oxfordFmrib04  # T1w scan is not aligned with other contrasts (subject repositioning)
- sub-oxfordFmrib01  # registration issue (segmentation OK)
dti_md:
- sub-beijingPrisma03  # wrong FOV placement
- sub-mountSinai03  # T2w was re-acquired (hence wrong T2w -> DWI registration)
- sub-oxfordFmrib04  # T1w scan is not aligned with other contrasts (subject repositioning)
- sub-oxfordFmrib01  # registration issue (segmentation OK)
dti_rd:
- sub-beijingPrisma03  # wrong FOV placement
- sub-mountSinai03  # T2w was re-acquired (hence wrong T2w -> DWI registration)
- sub-oxfordFmrib04  # T1w scan is not aligned with other contrasts (subject repositioning)
- sub-oxfordFmrib01  # registration issue (segmentation OK)
brain_t1:
- sub-balgrist04  # motion artifacts
- sub-barcelona01  # wrong FOV placement
- sub-barcelona02  # wrong FOV placement
- sub-barcelona03  # wrong FOV placement
- sub-barcelona04  # wrong FOV placement
- sub-barcelona05  # wrong FOV placement
- sub-barcelona06  # wrong FOV placement
- sub-beijingGE01  # signal loss in superior brain
- sub-beijingGE02  # signal loss in superior brain
- sub-beijingGE03  # signal loss in superior brain
- sub-beijingGE04  # signal loss in superior brain
- sub-beijingPrisma01  # wrong FOV placement
- sub-beijingPrisma02  # wrong FOV placement
- sub-beijingPrisma03  # wrong FOV placement
- sub-beijingPrisma04  # wrong FOV placement
- sub-beijingPrisma05  # wrong FOV placement
- sub-beijingVerio01  # severe brain cut off after defacing
- sub-fslAchieva06  # wrong FOV placement
- sub-milan01  # wrong FOV placement
- sub-milan02  # wrong FOV placement
- sub-milan03  # wrong FOV placement
- sub-milan04  # wrong FOV placement
- sub-milan07  # severe brain cut off after defacing
- sub-nwu01  # wrong FOV placement
- sub-ucdavis01  # severe brain cut off after defacing
- sub-ucdavis02  # severe brain cut off after defacing
- sub-ucdavis06  # severe brain cut off after defacing
- sub-ucdavis07  # wrong FOV placement