--- a +++ b/README.md @@ -0,0 +1,72 @@ +<h1>SPIDER - Lumbar Spine Segmentation in MR Images: A Dataset and a Public Benchmark</h1> + +<h2>Creators</h2> +<ul> + <li>Jasper Willem van der Graaf<sup>1</sup></li> + <li>Miranda L. van Hooff<sup>1</sup></li> + <li>Constantinus F. M. Buckens<sup>1</sup></li> + <li>Matthieu Rutten<sup>2</sup></li> + <li>Job L. C. van Susante<sup>3</sup></li> + <li>Robert Jan Kroeze<sup>4</sup></li> + <li>Marinus de Kleuver<sup>1</sup></li> + <li>Bram van Ginneken<sup>1</sup></li> + <li>Nikolas Lessmann<sup>1</sup></li> +</ul> + +<h2>Description</h2> +<p> +This is a large publicly available <strong>multi-center lumbar spine MRI dataset</strong> with expert reference segmentations of vertebrae, intervertebral discs (IVDs), and the spinal canal. +The dataset contains <strong>447 sagittal T1- and T2-weighted MRI series</strong> from <strong>218 studies</strong> of <strong>218 patients</strong> with a history of low back pain. +</p> + +<p> +Data was collected from four different hospitals. An additional <strong>hidden test set</strong> is used for evaluation in the accompanying SPIDER challenge at +<a href="https://spider.grand-challenge.org/" target="_blank">spider.grand-challenge.org</a>. +</p> + +<p> +We release this dataset to promote collaboration and participation in the field of spine segmentation and to improve the diagnostic value of lumbar spine MRI. +</p> + +<h3>Dataset Details</h3> +<ul> + <li>The <strong>overview file</strong> includes: + <ul> + <li>Training and validation assignments</li> + <li>Biological sex for all patients</li> + <li>Patient age (when available)</li> + <li>Scanner and acquisition parameters for each MRI study</li> + </ul> + </li> + <li> + A separate file provides <strong>radiological gradings</strong> per IVD level for the following degenerative changes: + <ol> + <li>Modic changes (Type I, II, or III)</li> + <li>Endplate changes / Schmorl nodes (binary)</li> + <li>Spondylolisthesis (binary)</li> + <li>Disc herniation (binary)</li> + <li>Disc narrowing (binary)</li> + <li>Disc bulging (binary)</li> + <li>Pfirrman grade (Grade 1 to 5)</li> + </ol> + </li> +</ul> + +<h2>Publication</h2> +<p> +This dataset and the associated public benchmark are described in the following paper:<br> +<a href="https://www.nature.com/articles/s41597-024-03090-w" target="_blank"> +https://www.nature.com/articles/s41597-024-03090-w +</a> +</p> + +<h2>Challenge</h2> +<p> +The public segmentation challenge associated with this dataset is hosted at:<br> +<a href="https://spider.grand-challenge.org/" target="_blank">https://spider.grand-challenge.org/</a> +</p> + +<h2>How to Cite</h2> +<p> +When using this dataset, please cite both the dataset (with its correct DOI) and the paper linked above. +</p>