--- a +++ b/README.md @@ -0,0 +1,15 @@ +## LGG Segmentation Dataset + +Dataset used in: + +Mateusz Buda, AshirbaniSaha, Maciej A. Mazurowski "Association of genomic subtypes of lower-grade gliomas with shape features automatically extracted by a deep learning algorithm." Computers in Biology and Medicine, 2019. + +and + +Maciej A. Mazurowski, Kal Clark, Nicholas M. Czarnek, Parisa Shamsesfandabadi, Katherine B. Peters, Ashirbani Saha "Radiogenomics of lower-grade glioma: algorithmically-assessed tumor shape is associated with tumor genomic subtypes and patient outcomes in a multi-institutional study with The Cancer Genome Atlas data." Journal of Neuro-Oncology, 2017. + +This dataset contains brain MR images together with manual FLAIR abnormality segmentation masks. +The images were obtained from The Cancer Imaging Archive (TCIA). +They correspond to 110 patients included in The Cancer Genome Atlas (TCGA) lower-grade glioma collection with at least fluid-attenuated inversion recovery (FLAIR) sequence and genomic cluster data available. +Tumor genomic clusters and patient data is provided in data.csv file. +For more information on genomic data, refer to the publication "Comprehensive, Integrative Genomic Analysis of Diffuse Lower-Grade Gliomas" and supplementary material available at https://www.nejm.org/doi/full/10.1056/NEJMoa1402121 \ No newline at end of file