Datasets:
Nathaniel Huber
NHuber/
ClotsRevealFiberNetworks
0
Downloads: 1
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GENERAL INFORMATION

  1. Title of Dataset: Clots reveal anomalous elastic behavior of fiber networks: Data.

  2. Author Information
    A. Principal Investigator Contact Information
    Name: Kinjal Dasbiswas
    Institution: Department of Physics, University of California, Merced
    Address: Merced, CA 95343, USA
    Email: kdasbiswas@ucmerced.edu

    B. Associate or Co-investigator Contact Information
    Name: Andrei Zakharov
    Institution: Department of Materials Science and Engineering, University of Pennsylvania
    Address: Philadelphia, PA 19104, USA
    Email: andreiz@seas.upenn.edu

  3. Date of data collection: August 17, 2023

  4. Geographic location of data collection: Philadelphia, PA 19104, USA

  5. Information about funding sources that supported the collection of the data: N/A

SHARING/ACCESS INFORMATION

  1. Licenses/restrictions placed on the data: N/A

  2. Links to publications that cite or use the data: TBD

  3. Links to other publicly accessible locations of the data: N/A

  4. Links/relationships to ancillary data sets: N/A

  5. Was data derived from another source? no

  6. Recommended citation for this dataset: TBD

DATA & FILE OVERVIEW

  1. File List:
    PPP_G-stress.dat - G'/stress data for crosslinked and uncrosslinked PPP clots shown in Fig.2C

    PPP_G-strain.dat - G'/strain data for crosslinked PPP clots at different connectivity shown in Fig.2D

    PPP_k04_strain001.dat - xy coordinates and other supplementary data for crosslinkedPPP clots at strain 0.01 shown in Fig.3A

    PPP_k04_strain006.dat - xy coordinates and other supplementary data for crosslinkedPPP clots at strain 0.06 shown in Fig.3A

    PPP_k04_strain010.dat - xy coordinates and other supplementary data for crosslinkedPPP clots at strain 0.1 shown in Fig.3A

    PPP_k04_strain030.dat - xy coordinates and other supplementary data for crosslinkedPPP clots at strain 0.3 shown in Fig.3A

    PPP_k01_strain001.dat - xy coordinates and other supplementary data for uncrosslinkedPPP clots at strain 0.01 shown in Fig.3A

    PPP_k01_strain006.dat - xy coordinates and other supplementary data for uncrosslinkedPPP clots at strain 0.06 shown in Fig.3A

    PPP_k01_strain010.dat - xy coordinates and other supplementary data for uncrosslinkedPPP clots at strain 0.1 shown in Fig.3A

    PPP_k01_strain030.dat - xy coordinates and other supplementary data for uncrosslinkedPPP clots at strain 0.3 shown in Fig.3A

    PPP_k04_energy.dat - stretching, bending, buckling, compressive energy densities vs strain in PPP crosslinked clots shown in Fig.3B

    PPP_k01_energy.dat - stretching, bending, buckling, compressive energy densities vs strain in PPP uncrosslinked clots shown in Fig.3B

    PRP_k05_strain000.dat - xy coordinates and other supplementary data for crosslinked PRP clots shown in Fig.4C

    PRP_k02_strain000.dat - xy coordinates and other supplementary data for uncrosslinked PRP clots shown in Fig.4C

    PRP_p06_k05_strain000.dat - xy coordinates and other supplementary data for undercoordinated (z=3.54) crosslinked PRP clots shown in Fig.4D

    PRP_p07_k05_strain000.dat - xy coordinates and other supplementary data for overcoordinated (z=4.13) crosslinked PRP clots shown in Fig.4D

    NormalForce.dat - normal force/time data for PRP clots shown in Fig.4F

    PRP_G-stress.dat - G'/stress data for crosslinked and uncrosslinked PPP clots shown in Fig.5A

    PRP_k05_strain001.dat - xy coordinates and other supplementary data for crosslinked PRP clots at strain 0.01 shown in Fig.5B

    PRP_k05_strain03.dat - xy coordinates and other supplementary data for crosslinked PRP clots at strain 0.3 shown in Fig.5B

    PRP_k02_strain001.dat - xy coordinates and other supplementary data for uncrosslinked PRP clots at strain 0.01 shown in Fig.5B

    PRP_k02_strain03.dat - xy coordinates and other supplementary data for uncrosslinked PRP clots at strain 0.3 shown in Fig.5B

    PRP_k05_energy.dat - stretching, bending, buckling, compressive energy densities vs strain in PPP crosslinked clots shown in Fig.3B

    PRP_k02_energy.dat - stretching, bending, buckling, compressive energy densities vs strain in PPP uncrosslinked clots shown in Fig.3B

  2. Relationship between files, if important: no

  3. Additional related data collected that was not included in the current data package: no

  4. Are there multiple versions of the dataset? no

METHODOLOGICAL INFORMATION

  1. Description of methods used for collection/generation of data: The dataset was obtained via numerical simulations of a model elastic network of crosslinked and uncrosslinked clots. To find the mechanical equilibrium condition under applied load, we implement overdamped dynamics to find the minimum of the total elastic energy and XY positions of network's branchpoints.

  2. Methods for processing the data: custom C++ code was used to run the simulations and generate the datasets

  3. Instrument- or software-specific information needed to interpret the data: any software that allows to visualize 3D data can be used to interpret/plot the data, e.g. Gnuplot (www.gnuplot.info)

  4. Standards and calibration information, if appropriate: N/A

  5. Environmental/experimental conditions: N/A

  6. Describe any quality-assurance procedures performed on the data: N/A

  7. People involved with sample collection, processing, analysis and/or submission: N/A

DATA-SPECIFIC INFORMATION FOR: *.dat

  1. Number of variables: 12

  2. Number of cases/rows: varies

  3. Variable List:

    • X1 - x coordinate of bond end 1 (m)
    • Y1 - y coordinate of bond end 1 (m)
    • X2 - x coordinate of bond end 2 (m)
    • Y2 - y coordinate of bond end 2 (m)
    • strain - strain of bond
    • length - length of bond (m)
    • target_length - reference length of bond (m)
    • eps_cr - critical buckling strain of bond

    • state - state of bond

    • Shear strain - shear strain of clot

    • Shear stress - shear stress of clot (Pa)

    • Storage Modulus - storage modulus of clot (Pa)

    • Strain - applied srain

    • Estr - stretching energy
    • Ebend - bending energy
    • Ebuckle - buckling energy

    • Ecompr - compression energy

    • Time - gelation time (min)

    • PRP1 - PRP clot, donor 1, normal force (mN)
    • PRP2 - PRP clot, donor 2, normal force (mN)
    • PRP3 - PRP clot, donor 3, normal force (mN)
    • PRP1+T101 - PRP+T101 clot, donor 1, normal force (mN)
    • PRP2+T101 - PRP+T101 clot, donor 1, normal force (mN)
    • PRP3+T101 - PRP+T101 clot, donor 1, normal force (mN)
    • PPP1 - PPP clot, donor 1, normal force (mN)

  4. Missing data codes: no

  5. Specialized formats or other abbreviations used: no