[5847a1]: / X_train_9po2I7U / X_train / molecular_train.csv

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# ID CHR START END REF ALT GENE PROTEIN_CHANGE EFFECT VAF DEPTH
1 P100000 11 119149248.0 119149248.0 G A CBL p.C419Y non_synonymous_codon 0.083 1308.0
2 P100000 5 131822301.0 131822301.0 G T IRF1 p.Y164* stop_gained 0.022 532.0
3 P100000 3 77694060.0 77694060.0 G C ROBO2 p.? splice_site_variant 0.41 876.0
4 P100000 4 106164917.0 106164917.0 G T TET2 p.R1262L non_synonymous_codon 0.43 826.0
5 P100000 2 25468147.0 25468163.0 ACGAAGAGGGGGTGTTC A DNMT3A p.E505fs*141 frameshift_variant 0.0898 942.0
6 P100001 22 29091725.0 29091725.0 C T CHEK2 p.W454* stop_gained 0.418 514.0
7 P100001 3 178936091.0 178936091.0 G A PIK3CA p.E545K non_synonymous_codon 0.101 558.0
8 P100002 3 178936091.0 178936091.0 G A PIK3CA p.E545K non_synonymous_codon 0.197 310.0
9 P100002 17 7579533.0 7579533.0 G A TP53 p.Q52* stop_gained 0.597 487.0
10 P100004 X 123190080.0 123190081.0 C CA STAG2 p.L436fs*5 frameshift_variant 0.4691 1296.0
11 P100006 22 41562637.0 41562637.0 C T EP300 p.R1281* stop_gained 0.068 557.0
12 P100006 12 22811995.0 22811995.0 A G ETNK1 p.N244S non_synonymous_codon 0.286 512.0
13 P100006 9 5073770.0 5073770.0 G T JAK2 p.V617F non_synonymous_codon 0.065 380.0
14 P106008 17 74733113.0 74733113.0 A G SRSF2 p.Y44H non_synonymous_codon 0.458 1647.0
15 P100006 4 106156108.0 106156109.0 G GA TET2 p.N338fs*2 frameshift_variant 0.0555 884.0
16 P100007 4 106156747.0 106156747.0 C T TET2 p.R550* stop_gained 0.065 789.0
17 P100007 4 106164794.0 106164794.0 G C TET2 p.C1221S non_synonymous_codon 0.022 531.0
18 P100008 7 148516722.0 148516722.0 T C EZH2 p.N322S non_synonymous_codon 0.487 2065.0
19 P122444 2 198267710.0 198267710.0 C T SF3B1 p.R590K non_synonymous_codon 0.267 1124.0
20 P100010 17 7577120.0 7577120.0 C T TP53 p.R273H non_synonymous_codon 0.869 510.0
21 P100010 1 36932122.0 36932123.0 T TG CSF3R p.S810fs*6 frameshift_variant 0.0981 786.0
22 P100012 3 128200118.0 128200118.0 C T GATA2 p.R396Q non_synonymous_codon 0.51 1472.0
23 P116773 8 128750681.0 128750681.0 C A MYC p.T73N non_synonymous_codon 0.436 1138.0
24 P100014 X 123199732.0 123199732.0 G T STAG2 p.E678* stop_gained 0.094 398.0
25 P100015 17 7578556.0 7578556.0 T A TP53 p.? splice_site_variant 0.84 1028.0
26 P100015 7 148506161.0 148506162.0 AC A EZH2 p.? splice_site_variant 0.4341 1020.0
27 P100016 16 3779814.0 3779814.0 C T CREBBP p.W1745* stop_gained 0.475 512.0
28 P100016 1 115258747.0 115258747.0 C T NRAS p.G12D non_synonymous_codon 0.021 1182.0
29 P118787 17 74733113.0 74733113.0 A G SRSF2 p.Y44H non_synonymous_codon 0.093 2385.0
30 P100016 20 31022402.0 31022425.0 TCACCACTGCCATAGAGAGGCGGC T ASXL1 p.E635fs*15 frameshift_variant 0.4396 484.0
31 P100016 21 36206869.0 36206870.0 TG T RUNX1 p.K215fs*22 frameshift_variant 0.4378 1216.0
32 P100017 19 33792422.0 33792422.0 C A CEBPA p.R300L non_synonymous_codon 0.18 351.0
33 P100017 21 44524456.0 44524456.0 G A U2AF1 p.S34F non_synonymous_codon 0.26 931.0
34 P100017 20 31022240.0 31022241.0 AC A ASXL1 p.L576fs*127 frameshift_variant 0.1802 542.0
35 P100018 17 7578235.0 7578235.0 T G TP53 p.Y205S non_synonymous_codon 0.303 1206.0
36 P100018 17 7578454.0 7578454.0 G A TP53 p.A159V non_synonymous_codon 0.554 953.0
37 P100013 15 90631934.0 90631934.0 C T IDH2 p.R140Q non_synonymous_codon 0.24 792.0
38 P102811 17 74733113.0 74733113.0 A G SRSF2 p.Y44H non_synonymous_codon 0.036 847.0
39 P100019 X 123215311.0 123215311.0 C T STAG2 p.R953* stop_gained 0.897 514.0
40 P100019 20 31022441.0 31022442.0 A AG ASXL1 p.G646fs*12 frameshift_variant 0.3994 280.0
41 P100019 X 39916529.0 39916531.0 G GAT BCOR p.H1492fs*77 frameshift_variant 0.1784 516.0
42 P100020 21 36252940.0 36252940.0 G C RUNX1 p.S141W non_synonymous_codon 0.041 778.0
43 P100020 X 123179197.0 123179197.0 C T STAG2 p.R216* stop_gained 0.894 136.0
44 P100020 4 106194057.0 106194057.0 C T TET2 p.Q1507* stop_gained 0.402 671.0
45 P100020 4 106197167.0 106197167.0 C T TET2 p.Q1834* stop_gained 0.452 518.0
46 P100020 20 31022441.0 31022442.0 A AG ASXL1 p.G646fs*12 frameshift_variant 0.3766 220.0
47 P100020 19 33792246.0 33792250.0 ACGCG A CEBPA p.A358fs*63 frameshift_variant 0.2424 122.0
48 P100020 19 33793203.0 33793204.0 CG C CEBPA p.A40fs*120 frameshift_variant 0.044 75.0
49 P105621 2 25470599.0 25470599.0 A G DNMT3A p.I292T non_synonymous_codon 0.028 3166.0
50 P100022 4 106162580.0 106162580.0 A T TET2 p.E1165V non_synonymous_codon 0.301 658.0
51 P100022 5 170837543.0 170837547.0 C CTCTG NPM1 p.W288fs*12 frameshift_variant 0.2601 392.0
52 P100022 4 106155748.0 106155749.0 TC T TET2 p.V218fs*32 frameshift_variant 0.0542 860.0
53 P100023 X 39916519.0 39916519.0 T C BCOR p.N1495S non_synonymous_codon 0.851 382.0
54 P100023 21 36231783.0 36231783.0 G A RUNX1 p.R201* stop_gained 0.41 874.0
55 P120366 17 74732992.0 74733010.0 TCGCGGCCGTCCAGCACGG T SRSF2 p.A78_R83delAVLDGR inframe_codon_loss 0.4085 1584.0
56 P100023 20 31022441.0 31022442.0 A AG ASXL1 p.G646fs*12 frameshift_variant 0.3876 279.0
57 P100023 X 123195623.0 123195624.0 CT C STAG2 p.L513fs*9 frameshift_variant 0.8607 168.0
58 P100023 4 106155920.0 106155921.0 TC T TET2 p.N275fs*18 frameshift_variant 0.4104 742.0
59 P100024 3 178936091.0 178936091.0 G A PIK3CA p.E545K non_synonymous_codon 0.057 502.0
60 P100025 3 178936091.0 178936091.0 G A PIK3CA p.E545K non_synonymous_codon 0.054 481.0
61 P100026 1 115258747.0 115258747.0 C T NRAS p.G12D non_synonymous_codon 0.317 914.0
62 P100086 1 115258747.0 115258747.0 C T NRAS p.G12D non_synonymous_codon 0.334 1306.0
63 P100026 21 36164872.0 36164872.0 G A RUNX1 p.Q335* stop_gained 0.327 278.0
64 P100026 X 123176469.0 123176469.0 C T STAG2 p.R146* stop_gained 0.327 346.0
65 P100026 20 31022402.0 31022425.0 TCACCACTGCCATAGAGAGGCGGC T ASXL1 p.E635fs*15 frameshift_variant 0.4485 418.0
66 P100026 X 39932277.0 39932281.0 C CTTGG BCOR p.K774fs*44 frameshift_variant 0.2686 632.0
67 P100026 21 36252853.0 36252855.0 C CCT RUNX1 p.G170fs*7 frameshift_variant 0.1586 847.0
68 P100026 X 123195162.0 123195163.0 T TA STAG2 p.L503fs*6 frameshift_variant 0.6128 212.0
69 P100026 19 56173949.0 56173964.0 CAGATTAACCAGGACA C U2AF2 p.I191_K195delINQDK inframe_codon_loss 0.378 906.0
70 P102701 2 25470588.0 25470588.0 C A DNMT3A p.V296L non_synonymous_codon 0.347 1904.0
71 P100014 15 90631934.0 90631934.0 C T IDH2 p.R140Q non_synonymous_codon 0.489 1981.0
72 P100027 X 39922925.0 39922929.0 C CCTTT BCOR p.A1262fs*16 frameshift_variant 0.2768 934.0
73 P100027 X 123224472.0 123224477.0 A ACACTG STAG2 p.T1112fs*6 frameshift_variant 0.2414 587.0
74 P120912 13 48916837.0 48916837.0 A G RB1 p.N123D non_synonymous_codon 0.465 993.0
75 P110750 17 74732942.0 74732966.0 TGTGGTGTGAGTCCGGGGGGCGGCC T SRSF2 p.G93_H100delGRPPDSHH inframe_codon_loss 0.3775 869.0
76 P100029 4 106157246.0 106157246.0 C A TET2 p.S716* stop_gained 0.315 672.0
77 P100029 4 106157845.0 106157845.0 C T TET2 p.Q916* stop_gained 0.273 480.0
78 P100030 3 178936091.0 178936091.0 G A PIK3CA p.E545K non_synonymous_codon 0.098 504.0
79 P100030 3 77684138.0 77684138.0 G A ROBO2 p.G1309E non_synonymous_codon 0.226 560.0
80 P100030 20 31022441.0 31022442.0 A AG ASXL1 p.G646fs*12 frameshift_variant 0.3661 244.0
81 P100031 X 76937694.0 76937694.0 C G ATRX p.K1018N non_synonymous_codon 0.23 221.0
82 P100031 3 178936091.0 178936091.0 G A PIK3CA p.E545K non_synonymous_codon 0.07 372.0
83 P100031 1 43818424.0 43818425.0 GC G MPL p.Y631fs*>5 frameshift_variant 0.1505 740.0
84 P100032 5 176939370.0 176939370.0 C T DDX41 p.R525H non_synonymous_codon 0.035 476.0
85 P100032 5 176942005.0 176942005.0 A C DDX41 p.L237W non_synonymous_codon 0.486 682.0
86 P100032 3 178936091.0 178936091.0 G A PIK3CA p.E545K non_synonymous_codon 0.035 694.0
87 P100033 3 178936091.0 178936091.0 G A PIK3CA p.E545K non_synonymous_codon 0.054 484.0
88 P100033 17 7577550.0 7577550.0 C T TP53 p.G244D non_synonymous_codon 0.478 480.0
89 P100033 3 136088003.0 136088004.0 C CT STAG1 p.S831fs*10 frameshift_variant 0.0282 652.0
90 P100034 16 67650711.0 67650711.0 G A CTCF p.R339Q non_synonymous_codon 0.359 933.0
91 P100034 X 133549136.0 133549136.0 C T PHF6 p.R274* stop_gained 0.052 454.0
92 P110732 X 15808649.0 15808649.0 G T ZRSR2 p.E11* stop_gained 0.084 764.0
93 P100034 19 13054627.0 13054632.0 A ATTGTC CALR p.K385fs*47 frameshift_variant 0.3425 1220.0
94 P100035 5 176943743.0 176943743.0 G A DDX41 p.Q41* stop_gained 0.465 184.0
95 P102663 2 198267705.0 198267705.0 C T SF3B1 p.E592K non_synonymous_codon 0.38 1172.0
96 P100037 11 119156184.0 119156184.0 C T CBL p.R617W non_synonymous_codon 0.521 836.0
97 P100037 17 7577114.0 7577114.0 C T TP53 p.C275Y non_synonymous_codon 0.82 673.0
98 P100037 6 43325085.0 43325085.0 G A ZNF318 p.R323* stop_gained 0.415 734.0
99 P100038 2 25457203.0 25457204.0 A AC DNMT3A p.V895fs*26 frameshift_variant 0.0773 914.0
100 P100039 4 106197420.0 106197420.0 A G TET2 p.E1918G non_synonymous_codon 0.212 794.0