--- a +++ b/paf-prediction-challenge-database-1.0.0/challenge/index.shtml @@ -0,0 +1,299 @@ +<!--#set var="TITLE" value="Obtaining CinC Challenge 2001 Scores"--> +<!--#include virtual="/head.shtml"--> + + +<h2>About the events</h2> + +<p> +The PAF Prediction Challenge Database consists of 50 pairs of half-hour ECG +recordings. Each pair of recordings is obtained from a single 24-hour ECG. +Subjects in group A experienced PAF; for these subjects, one recording +ends just before the onset of PAF, and the other recording is distant in +time from any PAF (there is no PAF within 45 minutes before or after the +excerpt). Subjects in group N do not have PAF; in these, the times of the +recordings have been chosen at random. + +<p> +The number of subjects in group N is <em>n</em> +(where 20 < <em>n</em> < 30). The number of subjects in group A is +thus 50-<em>n</em>, a number also between 20 and 30. + +<p> +<b>Event 1 (Screening) is intended to determine if subjects in group A can +be distinguished from those in group N</b>. (In other words, can individuals at +risk of PAF be identified within a larger population, based on their ECGs?) +Since each subject is represented by a pair of consecutively numbered records +in the database, entrants in event 1 of the challenge should provide one +classification (`A' or `N') for the 50 odd-numbered records only +(<tt>t01</tt>, <tt>t03</tt>, <tt>t05</tt>, ... <tt>t99</tt>). The number of +correct classifications (0 to 50) is the event 1 score. + +<p> +<b>Event 2 (Prediction) is intended to determine if subjects in +group A have distinctive and detectable changes in their ECGs +immediately before PAF</b>. (In other words, is the imminent onset of +PAF predictable in an individual known to be at risk of PAF?) A +successful method for doing so should be able to determine which +record of each pair of group A records immediately precedes PAF. If +the identities of the group A records were known, it would be +sufficient to classify these records only; since the goal of event 1 +is to identify group A, however, we have not provided this +information! Entrants in event 2 of the challenge must therefore +classify exactly one of each pair of records in the test set as `A' +(defined as ``<em>immediately preceding PAF, if the patient belongs to +group A</em>''), and the other as `N' (defined as ``<em>not +immediately preceding PAF</em>''). One point is awarded for each +correctly classified record pair, so that the event 2 scores range +from <em>n</em> to 50 (the lower bound is <em>n</em> because the group +N subjects are always considered correctly classified). + +<h2>Preparing your entry</h2> + +<p> +Your entry needs to be prepared in a special text format, which depends on +the event you are entering: + +<ul> +<li> For event 1 (Screening), download this <a +href="template-test-1">template</a>, +and replace the `?' characters with your classifications (`A' or `N') +for each of the 50 record pairs in the test set. + +<li> For event 2 (Prediction), download this <a +href="template-test-2">template</a>, +and replace the `?' characters with your classifications (`A' or `N') +for each of the 100 records in the test set. +</ul> + +<h2>Submitting your entry for scoring</h2> + +<p> +Please double-check your entry before submitting it to be sure it is in +<strong>plain text</strong> format, exactly like the template files. +<em>HTML-formatted entries will confuse the automated scorer and will not be +scored.</em> + +<p> +To submit your entry successfully, you will need: + +<ul> +<li> A web browser that supports HTTP uploads, such as Netscape 2.0 or + later, or MS Internet Explorer 4.0 or later. + +<li> A valid e-mail address that is known to us. Please + <a href="/register.shtml">sign in</a> before submitting your entry. + (If you signed in on a previous visit, you do not need to sign in again.) + All entries are logged by date, time, and the e-mail address of the + entrant. + + <p> + <b>Important:</b> Your score will be sent by e-mail to the address you + specify. Please be sure that your e-mail address is entered correctly, + or you won't be able to view your score. + +<li> A password. If you don't yet have a password, or if you + have forgotten your password, go to the entry form (see below), fill + in only your e-mail address, click on the "Get password" button, and a + password will be sent to your e-mail address immediately. +</ul> + +<p> +After filling in your e-mail address and password on the +<a href="http://www.physionet.org/cgi-bin/cinc-2001-score">entry form</a>. +enter the name of the file that contains your correctly-formatted entry +(you may use the <b>Browse</b> button to find it), indicate which +event you wish to enter, and click on <b>Upload entry</b>. + +<p> +If you wish to enter both events, you may do so, but you will need to +submit separate entries, one in each format, in this case. + +<h2>Notes</h2> + +<p> +Please be careful not to submit more than one copy of the same results, since +each submission will be counted against your quota of submissions. If this +happens inadvertently, please +<a href="mailto:webmaster@physionet.org subject=duplicate entry">send a +note</a> quoting the date and time of the duplicate submission; your +submission counter will be adjusted manually if the error can be confirmed. + +<p> +If you are tempted to try submitting many entries in order to learn about the +correct classifications, why not play <a +href="http://www.lizardpoint.com/fun/mastermind/mastmind.html" +target="other">Mastermind</a> instead? We will reject obvious attempts to +circumvent the spirit of the challenge in this way, including entries that do +not have the correct number of classifications (50 for event 1, 100 for event +2), entries in event 1 with fewer than 21 or more than 29 `N' classifications, +entries in event 2 that do not have exactly one `A' classification for each of +the 50 record pairs, and large numbers of entries from a single entrant. +Delivery of your score may be delayed if you submit more than one entry per +event per day. + +<p> +UNIX versions of Netscape, and possibly other browsers, will allow the +user to specify a directory name in the <b>File to upload</b> field of the +entry form, but the browser will not transmit anything in this case and will +hang until the user interrupts it by clicking on <b>Stop</b>. This behavior +is a bug in the browser and cannot be detected or avoided by the PhysioNet web +server. Other browsers will detect and disallow attempts to upload +directories. + +<a name="faq"><h2>Frequently asked questions</h2></a> + +<p> +If your question is not answered below, please consult the +<a href="/faq.shtml">PhysioNet FAQ</a>. + +<p> +<b>Group B subjects are not explicitly defined in the text. I assume these +are Group N subjects?</b> + +<p> +This is correct. Group B was renamed Group N. There should no longer be any +references to Group B. Sorry for the confusion! + +<p> +<b>We have to put exactly one A under one of the subjects of each even-odd +pair in event 2. Does this mean that exactly 50 As and 50 Ns are expected in +a submission for event 2 scoring?</b> + +<p> +This is also correct. + +<p> +<b>I presume this scoring scheme is produced in order to allow submission for +only one of the events, and/or to eliminate the possibility of contradictory +submissions for event 1 and event 2, from the same author?</b> + +<p> +You are welcome to submit results for both events, but they must be separate +submissions. Because of the nature of the events, it would be a poor strategy +to submit the same classifications in both cases, even if the autoscorer +permitted this. In event 1, the goal is to minimize the number of +misclassified subjects in both groups, so it would be a mistake to mark one +record in each pair as `A' (unless you really believe that all 50 subjects +belong to group A; as stated above, however, there are between 20 and 30 +subjects in group A). + +<p> +In event 2, the goal is to minimize the number of misclassified records in +group A only. In this event, it would be a mistake to omit classifying one +record in any pair as `A', because if that pair turned out to belong to group +A, you would forfeit the opportunity to score a point for that pair. + +<p> +The submission formats for the two events were deliberately designed to be +different. This makes it easy for the autoscorer to recognize a result +submitted to the wrong event in error, so that such a case doesn't get counted +against your quota of submissions. + +<p> +<b>Still, one can have a high score on one event and a poor score on the +other. How do you treat this?</b> + +<p> +The two events are really addressing rather different questions, using the same +data set. (This, in a nutshell, is one of the principal <em>raisons +d'Ítre</em> for PhysioNet: to make it possible for data to be used to address +more than one question!) We will award US$500 to the winner of event 1, and +US$500 to the winner of event 2. If you win both events, you will receive +US$1000. + +<p> +<b>Who is eligible to win an award?</b> + +<p> +To be eligible for an award, you must enter the competition +officially (by submitting at least one set of results for scoring, and an +abstract describing your work to Computers in Cardiology 2001, no later than +the abstract deadline of 1 May 2001). You may submit revised results at +any time until noon GMT on 21 September 2001. At that time, the winners +will be determined based on the highest scores received by official entrants. +The date and time of the submission will be used as a tiebreaker if necessary. + +<p> +Submissions from members and affiliates of our research groups at MIT, Boston +University, Harvard Medical School, Beth Israel Deaconess Medical Center, and +McGill University are not eligible for awards, although all are welcome to +participate. + +<p> +If you have missed the deadline for submitting an abstract to Computers in +Cardiology 2001, we still encourage you to participate unofficially. If you +receive a high score, your achievement will be recognized on this web site. +If you are able to attend Computers in Cardiology, you will have an opportunity +to discuss your work informally with other participants during a workshop +session. + +<p> +<b>Would it be possible to submit my classification result and ask for +scoring during the weekend? How long will it take for scoring?</b> + +<p> +The scoring is performed automatically -- just follow the instructions +above for submitting your results. Your score is sent to you by return email +immediately. + +<p> +If your results are not properly formatted, you will receive an email reply +that will indicate this; if this happens, please review the instructions +carefully and try again. Your friendly challenge organizer reads his +<a href="mailto:webmaster@physionet.org?subject=CinC Challenge 2001 Help!"> +email</a> frequently (on the weekends, too), especially as the critical +deadlines approach, and promises to answer your questions quickly if you get +stuck! + +<p> +<b>If I would like to submit more than one result for an event, should I +use the same file name for each submission of the text file (the default +names are template-test-1.txt for event 1 and template-test-2.txt for event +2)?</b> + +<p> +This doesn't matter (your submission is archived using a file name +constructed from the date, time, and your email address). + +<p> +<b>About the result template for event 1 (PAF risk assessment), there are +only odd-numbered records in the template. What should I do if the +classification results for the two records in a pair are different? +Should I just write down the results for the odd-numbered records, or can I +choose the more reliable one from each pair of records?</b> + +<p> +Definitely, you should choose whatever classification you consider to be more +reliable, provided that you are using objective criteria for making the choice. +Each pair of records comes from one subject, so for purposes of event 1 the +correct classification is by definition the same for both records in the pair: +either the subject has PAF (`A') or not (`N'). Please keep in mind that the +classifications must be determined by an algorithm, not manually, so if your +algorithm produces a confidence level, for example, and you choose the +classification with the higher confidence level each time, this is acceptable +(your decision is algorithmically determined); but it would not be acceptable +for you to decide on subjective grounds which classification to use in each +case. + +<p> +<b>According to the instructions for abstract submission, I should give the +result of my algorithm. Does that mean the scoring result? So I have to +get the scores first before I can submit the abstract, right?</b> + +<p> +This is correct: your abstract should include your score. You should consider +this score to represent preliminary results; your abstract will be judged on +the basis of the ideas you discuss and not on the score itself (although a good +score might help a marginal abstract, a poor score will not rule out a good +abstract). You may submit revised results for scoring before or after the +abstract deadline, at any time until noon GMT on 21 September 2001. Your best +results determine your standing in the competition. In your finished +manuscript (which is not due until 25 September 2001) you should include your +best results and describe what changes, if any, you made in order to improve +your initial results. + +<hr> + +<!--#include virtual="/footer.shtml" --> +</body> +</html>