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b/mit-bih-arrhythmia-database-1.0.0/mitdbdir/src/dbnotes.c |
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/* file: dbnotes.c G. Moody 25 August 1988 |
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Last revised: 6 December 1990 |
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Create database notes file (tbl/troff input format) |
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Copyright (C) Massachusetts Institute of Technology 1990. All rights reserved. |
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*/ |
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#include <stdio.h> |
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#include <ecg/db.h> |
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#include <ecg/ecgmap.h> |
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/* Rhythm types. These may be rearranged arbitrarily; the order determines |
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the order in which rhythms are printed in the rhythm table. Add a call to |
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`setrtab' and adjust N_RTYPES whenever another rhythm is added. */ |
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#define R_UNDEF 0 |
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#define NSR 1 |
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#define SBR 2 |
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#define BII 3 |
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#define B22 4 |
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#define B3 5 |
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#define SAB 6 |
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#define PREX 7 |
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#define AB 8 |
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#define EAR 9 |
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#define SVTA 10 |
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#define AFL 11 |
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#define AFIB 12 |
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#define PR 13 |
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#define NOD 14 |
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#define VBG 15 |
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#define VTG 16 |
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#define IVR 17 |
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#define VT 18 |
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#define VFL 19 |
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#define N_RTYPES 20 /* number of rhythm types, including R_UNDEF */ |
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/* ST and T change types. */ |
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#define STP 0 /* increase in ST level */ |
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#define STN 1 /* decrease in ST level */ |
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#define TP 2 /* increase in T amplitude */ |
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#define TXP 3 /* extreme increase in T amplitude */ |
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#define TN 4 /* decrease in T amplitude */ |
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#define TXN 5 /* extreme decrease in T amplitude */ |
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#define TBP 6 /* biphasic T-wave */ |
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#define N_STYPES 7 /* number of ST and T change types */ |
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#define PLUS 1 /* positive change */ |
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#define MINUS 2 /* negative change */ |
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#define XPLUS 3 /* extreme positive change */ |
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#define XMINUS 4 /* extreme negative change */ |
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#define BIPHASIC 5 /* change to biphasic form */ |
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#define STCH0 1 /* beginning of ST change episode */ |
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#define STCH1 2 /* extremum of ST change */ |
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#define STCH2 3 /* end of ST change episode */ |
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#define TCH0 4 /* beginning of T change episode */ |
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#define TCH1 5 /* extremum of T change */ |
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#define TCH2 6 /* end of T change episode */ |
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/* Noise type bit masks. */ |
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#define C0 0x00 /* signal 0 clean */ |
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#define C1 0x00 /* signal 1 clean */ |
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#define C2 0x00 /* signal 2 clean */ |
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#define C3 0x00 /* signal 3 clean */ |
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#define N0 0x01 /* signal 0 noisy */ |
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#define N1 0x02 /* signal 1 noisy */ |
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#define N2 0x04 /* signal 2 noisy */ |
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#define N3 0x08 /* signal 3 noisy */ |
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#define U0 0x11 /* signal 0 unreadable */ |
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#define U1 0x22 /* signal 1 unreadable */ |
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#define U2 0x44 /* signal 2 unreadable */ |
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#define U3 0x88 /* signal 3 unreadable */ |
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#define UNREADABLE 0xff /* all signals unreadable */ |
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#define N_NTYPES 256 /* number of noise types */ |
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#define N_RLEN 20 /* number of distinct run lengths */ |
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/* Values for info_type. */ |
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#define NO_INFO 0 |
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#define MITDB 1 |
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#define EDB 2 |
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#define VALEDB 3 |
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struct btabstruct { |
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long lcount; /* number of beats of this type in learning period */ |
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long tcount; /* number of beats of this type in test period */ |
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} btab[ACMAX+1]; |
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struct rltabstruct { |
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long len; /* number of beats in run */ |
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long nruns; /* number of runs of `len' beats */ |
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} artab[N_RLEN], vrtab[N_RLEN]; |
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struct rtabstruct { |
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long episodes; /* number of episodes of this rhythm */ |
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long duration; /* duration of this rhythm (in sample intervals) */ |
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char *rstring; /* rhythm string as it appears in annotation file */ |
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char *rslong; /* rhythm name as it is printed by this program */ |
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int min3r, max3r; /* minimum/maximum length of 3 R-R intervals */ |
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} rtab[N_RTYPES]; |
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struct sttabstruct { |
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long episodes; /* number of episodes of ST or T change of this type */ |
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long duration; /* duration of episodes (in sample intervals) */ |
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char *ststring; /* description of change as printed by this program */ |
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int extremum; /* extreme value of change */ |
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} sttab[N_STYPES][MAXSIG]; |
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struct ntabstruct { |
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long episodes; /* number of episodes of this noise type */ |
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long duration; /* duration of this noise type (in sample intervals) */ |
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char *nstring; /* noise type as it is printed by this program */ |
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} ntab[N_NTYPES]; |
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long lsum, tsum; /* numbers of beats of all types in the learning and |
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test periods (tallied by `bstats') */ |
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long ttest; /* time of the end of the test period */ |
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main(argc, argv) |
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int argc; |
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char *argv[]; |
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{ |
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double t3min; |
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int a=0, age, c, i, info_type, magnitude, maxrate, minrate, noise = 0, |
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nsig, rhythm = R_UNDEF, rlen = -1, rr3, sign, st_calibrated = 0, |
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st_data = 0, t_data = 0, type, v=0; |
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static long n0, r0, tq0, tq1, tq2, tq3, s0[N_STYPES][MAXSIG]; |
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struct siginfo si[MAXSIG]; |
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struct anninfo ai; |
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struct ann annot; |
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static char buf[256], *infop, *p, *record, sex[10], umask; |
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/* Check command-line arguments. */ |
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if (argc < 3) { |
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fprintf(stderr, "usage: %s annotator record\n", argv[0]); |
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exit(1); |
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} |
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/* Open the database files. */ |
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ai.name = argv[1]; ai.stat = READ; record = argv[2]; |
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if (annopen(record, &ai, 1) < 0 || |
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(nsig = isigopen(record, si, -MAXSIG)) < 0) |
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exit(2); |
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/* Initialize variables. */ |
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t3min = strtim("3:0"); |
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ttest = strtim("5:0"); |
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setrtab(R_UNDEF, NULL, "Unspecified rhythm"); |
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setrtab(NSR, "N", "Normal sinus rhythm"); |
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setrtab(SBR, "SBR", "Sinus bradycardia"); |
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setrtab(BII, "BII", "2\\(de heart block"); |
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setrtab(B22, "B22", "2\\(de heart block (Mobitz type II)"); |
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setrtab(B3, "B3", "3\\(de heart block"); |
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setrtab(SAB, "SAB", "Sino-atrial block"); |
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setrtab(PREX, "PREX", "Pre-excitation (WPW)"); |
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setrtab(AB, "AB", "Atrial bigeminy"); |
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setrtab(EAR, "EAR", "Ectopic atrial rhythm"); |
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setrtab(SVTA, "SVTA", "SVTA"); |
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setrtab(AFL, "AFL", "Atrial flutter"); |
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setrtab(AFIB, "AFIB", "Atrial fibrillation"); |
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setrtab(PR, "P", "Paced rhythm"); |
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setrtab(NOD, "NOD", "Nodal (junctional) rhythm"); |
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setrtab(VBG, "B", "Ventricular bigeminy"); |
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setrtab(VTG, "T", "Ventricular trigeminy"); |
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setrtab(IVR, "IVR", "Idioventricular rhythm"); |
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setrtab(VT, "VT", "Ventricular tachycardia"); |
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setrtab(VFL, "VFL", "Ventricular flutter"); |
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for (c = 0; c < nsig; c++) { |
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setstab(STP, c, "Positive ST dev."); |
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setstab(STN, c, "Negative ST dev."); |
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setstab(TP, c, "Positive T dev."); |
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setstab(TXP, c, "T dev. \\(>= 400 \\(*mV"); |
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setstab(TN, c, "Negative T dev."); |
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setstab(TXN, c, "T dev. \\(<= \\(mi400 \\(*mV"); |
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setstab(TBP, c, "Biphasic T"); |
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} |
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switch (nsig) { |
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case 1: |
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setntab(C0, "Clean"); |
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setntab(N0, "Noisy"); |
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setntab(U0, "Unreadable"); |
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setntab(UNREADABLE, "Unreadable"); |
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umask = U0; |
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break; /* so far, so good ... */ |
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case 2: |
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setntab(C0|C1, "Both clean"); |
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setntab(C0|N1, "Lower noisy"); |
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setntab(C0|U1, "Lower unreadable"); |
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setntab(N0|C1, "Upper noisy"); |
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setntab(N0|N1, "Both noisy"); |
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setntab(N0|U1, "Upper noisy, lower unreadable"); |
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setntab(U0|C1, "Upper unreadable"); |
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setntab(U0|N1, "Upper unreadable, lower noisy"); |
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setntab(U0|U1, "Both unreadable"); |
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setntab(UNREADABLE, "Unreadable"); |
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umask = U0|U1; |
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break; /* yikes! */ |
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case 3: |
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setntab(C0|C1|C2, "All clean"); |
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setntab(C0|C1|N2, "Lower noisy"); |
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setntab(C0|C1|U2, "Lower unreadable"); |
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setntab(C0|N1|C2, "Middle noisy"); |
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setntab(C0|N1|N2, "Middle and lower noisy"); |
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setntab(C0|N1|U2, "Middle noisy, lower unreadable"); |
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setntab(C0|U1|C2, "Middle unreadable"); |
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setntab(C0|U1|N2, "Middle unreadable, lower noisy"); |
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setntab(C0|U1|U2, "Middle and lower unreadable"); |
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setntab(N0|C1|C2, "Upper noisy"); |
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setntab(N0|C1|N2, "Upper and lower noisy"); |
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setntab(N0|C1|U2, "Upper noisy, lower unreadable"); |
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setntab(N0|N1|C2, "Upper and middle noisy"); |
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setntab(N0|N1|N2, "All noisy"); |
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setntab(N0|N1|U2, "Lower unreadable, others noisy"); |
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setntab(N0|U1|C2, "Upper noisy, middle unreadable"); |
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setntab(N0|U1|N2, "Middle unreadable, others noisy"); |
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setntab(N0|U1|U2, "Upper noisy, others unreadable"); |
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setntab(U0|C1|C2, "Upper unreadable"); |
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setntab(U0|C1|N2, "Upper unreadable, lower noisy"); |
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setntab(U0|C1|U2, "Upper and lower unreadable"); |
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setntab(U0|N1|C2, "Upper unreadable, middle noisy"); |
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setntab(U0|N1|N2, "Upper unreadable, others noisy"); |
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setntab(U0|N1|U2, "Middle noisy, others unreadable"); |
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setntab(U0|U1|C2, "Upper and middle unreadable"); |
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setntab(U0|U1|N2, "Lower noisy, others unreadable"); |
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setntab(U0|U1|U2, "All unreadable"); |
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setntab(UNREADABLE, "Unreadable"); |
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umask = U0|U1|U2; |
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break; /* arggggh! */ |
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/* case 4: nonononononononononono!!!!!!! */ |
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default: |
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umask = UNREADABLE; |
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break; |
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} |
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/* Read the annotation file. */ |
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while (getann(0, &annot) >= 0) { |
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/* Count the annotation in the test or learning period as appropriate. */ |
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if (annot.time >= ttest) btab[annot.anntyp].tcount++; |
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else btab[annot.anntyp].lcount++; |
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249 |
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if (isqrs(annot.anntyp)) { |
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/* Update the ectopic activity tables if appropriate. */ |
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switch (map2(annot.anntyp)) { |
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case NORMAL: if (a > 0) { aupdate(a); a = 0; } |
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if (v > 0) { vupdate(v); v = 0; } |
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break; |
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case SVPB: if (v > 0) { vupdate(v); v = 0; } |
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a++; |
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break; |
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case PVC: |
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case FUSION: if (a > 0) { aupdate(a); a = 0; } |
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v++; |
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break; |
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} |
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265 |
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/* Keep track of the times of the last 4 beats. */ |
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tq0 = tq1; tq1 = tq2; tq2 = tq3; tq3 = annot.time; |
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268 |
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/* Update the count of consecutive beats in the current rhythm. */ |
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rlen++; |
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271 |
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/* Check various conditions which might make a heart rate |
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measurement invalid. */ |
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switch (rhythm) { |
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case NSR: |
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case SBR: |
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case BII: |
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case B22: |
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case B3: |
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case SAB: |
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case PREX: |
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if (map2(annot.anntyp) != NORMAL) rlen = -1; break; |
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283 |
case AB: |
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case NOD: |
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if (map1(annot.anntyp) != NORMAL) rlen = -1; break; |
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286 |
case EAR: |
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287 |
case SVTA: |
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if (map2(annot.anntyp) != SVPB) rlen = -1; break; |
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289 |
case PR: |
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if (annot.anntyp != PACE) rlen = -1; break; |
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291 |
case IVR: |
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case VT: |
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if (map1(annot.anntyp) == NORMAL) rlen = -1; break; |
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294 |
case VFL: |
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295 |
if (annot.anntyp != FLWAV) rlen = -1; break; |
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default: |
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297 |
break; |
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298 |
} |
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299 |
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300 |
/* If a valid heart rate can be measured, update the records of |
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301 |
maximum and minimum rate for the current rhythm. Note that |
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302 |
these can be determined from the minimum and maximum R-R |
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intervals; what is actually used here is the sum of three |
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consecutive intervals. */ |
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if (rlen >= 3) { |
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rr3 = tq3 - tq0; |
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307 |
if (rr3 > rtab[rhythm].max3r) rtab[rhythm].max3r = rr3; |
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308 |
if (rr3 < rtab[rhythm].min3r) rtab[rhythm].min3r = rr3; |
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309 |
} |
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310 |
} |
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311 |
else if (annot.anntyp == RHYTHM) { |
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312 |
/* Don't count the interval from the beginning of the record to |
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313 |
the first rhythm label as `unspecified rhythm' unless the first |
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314 |
beat label occurs before the first rhythm label. */ |
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315 |
if (tq3 > 0L) { |
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316 |
rtab[rhythm].episodes++; |
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317 |
rtab[rhythm].duration += annot.time - r0; |
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318 |
r0 = annot.time; |
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319 |
} |
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320 |
/* Identify the new rhythm. */ |
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321 |
for (i = 1, rhythm = R_UNDEF; i < N_RTYPES; i++) |
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322 |
if (strcmp(annot.aux+2, rtab[i].rstring) == 0) { |
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rhythm = i; |
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324 |
break; |
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325 |
} |
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326 |
if (rhythm == SVTA || rhythm == VT) rlen = 0; |
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else rlen = -1; |
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328 |
} |
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329 |
else if (annot.anntyp == STCH || annot.anntyp == TCH) { |
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330 |
/* Identify the nature of the ST or T change from the aux field. |
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331 |
The syntax of the aux field is one of: |
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332 |
"(" <type> [<signal designation>] <sign> |
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333 |
"A" <type> [<signal designation>] <sign> [<magnitude>] |
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334 |
<type> [<signal designation>] <sign> ")" |
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335 |
where <type> is "ST" or "T", <signal designation> is 1 or 2 |
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336 |
decimal digits, <sign> is "+", "++", "-", "--", or "BP", and |
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337 |
<magnitude> is 2-4 decimal digits. ("++" and "--" appear only |
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338 |
in T-wave change annotations; they designate extreme (>= 0.4 mV |
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339 |
changes in T-wave amplitude.) The signal designation is |
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340 |
the signal number (e.g., signal 0 is designated by "0", |
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341 |
etc.); in records which contain only one signal (such as those |
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342 |
in the VALE DB), the signal designation is omitted. The |
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|
343 |
magnitude is given in microvolts, and may also be omitted (as |
|
|
344 |
in the VALE DB). |
|
|
345 |
*/ |
|
|
346 |
if (annot.aux == NULL) |
|
|
347 |
fprintf(stderr, |
|
|
348 |
"warning: %s annotation without text field at %s\n", |
|
|
349 |
ecgstr(annot.anntyp), timstr(annot.time)); |
|
|
350 |
else { |
|
|
351 |
p = annot.aux+1; |
|
|
352 |
switch (*p) { |
|
|
353 |
case '(': |
|
|
354 |
if (annot.anntyp == STCH) { |
|
|
355 |
type = STCH0; |
|
|
356 |
p += 3; /* skip `(ST' */ |
|
|
357 |
} |
|
|
358 |
else { |
|
|
359 |
type = TCH0; |
|
|
360 |
p += 2; /* skip `(T' */ |
|
|
361 |
} |
|
|
362 |
break; |
|
|
363 |
case 'A': |
|
|
364 |
if (annot.anntyp == STCH) { |
|
|
365 |
type = STCH1; |
|
|
366 |
p += 3; /* skip `(ST' */ |
|
|
367 |
} |
|
|
368 |
else { |
|
|
369 |
type = TCH1; |
|
|
370 |
p += 2; /* skip `(T' */ |
|
|
371 |
} |
|
|
372 |
break; |
|
|
373 |
case 'S': |
|
|
374 |
type = STCH2; |
|
|
375 |
p += 2; /* skip `ST' */ |
|
|
376 |
break; |
|
|
377 |
case 'T': |
|
|
378 |
type = TCH2; |
|
|
379 |
p++; /* skip `T' */ |
|
|
380 |
break; |
|
|
381 |
default: |
|
|
382 |
fprintf(stderr, |
|
|
383 |
"warning: %s annotation with text field %s at %s\n", |
|
|
384 |
ecgstr(annot.anntyp), annot.aux, timstr(annot.time)); |
|
|
385 |
type = 0; |
|
|
386 |
break; |
|
|
387 |
} |
|
|
388 |
if (nsig > 1) { |
|
|
389 |
if ((c = atoi(p)) > 9) { |
|
|
390 |
p++; |
|
|
391 |
} |
|
|
392 |
p++; |
|
|
393 |
} |
|
|
394 |
else c = 0; |
|
|
395 |
switch (*p++) { |
|
|
396 |
case '+': |
|
|
397 |
if (*p == '+') { |
|
|
398 |
sign = XPLUS; |
|
|
399 |
p++; |
|
|
400 |
} |
|
|
401 |
else |
|
|
402 |
sign = PLUS; |
|
|
403 |
break; |
|
|
404 |
case '-': |
|
|
405 |
if (*p == '-') { |
|
|
406 |
sign = XMINUS; |
|
|
407 |
p++; |
|
|
408 |
} |
|
|
409 |
else |
|
|
410 |
sign = MINUS; |
|
|
411 |
break; |
|
|
412 |
case 'B': |
|
|
413 |
if (*p == 'P') { |
|
|
414 |
sign = BIPHASIC; |
|
|
415 |
p++; |
|
|
416 |
} |
|
|
417 |
break; |
|
|
418 |
default: |
|
|
419 |
fprintf(stderr, |
|
|
420 |
"warning: %s annotation with text field %s at %s\n", |
|
|
421 |
ecgstr(annot.anntyp), annot.aux, timstr(annot.time)); |
|
|
422 |
sign = 0; |
|
|
423 |
break; |
|
|
424 |
} |
|
|
425 |
if (*p && *p != ')') { |
|
|
426 |
if ((magnitude = atoi(p)) > 0) |
|
|
427 |
st_calibrated = 1; |
|
|
428 |
} |
|
|
429 |
else magnitude = 0; |
|
|
430 |
if (0 <= c && c < MAXSIG) switch (type) { |
|
|
431 |
case STCH0: /* beginning of ST change episode */ |
|
|
432 |
if (sign == PLUS) { |
|
|
433 |
st_data = 1; |
|
|
434 |
s0[STP][c] = annot.time; |
|
|
435 |
} |
|
|
436 |
else if (sign == MINUS) { |
|
|
437 |
st_data = 1; |
|
|
438 |
s0[STN][c] = annot.time; |
|
|
439 |
} |
|
|
440 |
break; |
|
|
441 |
case STCH1: /* extremum of ST change */ |
|
|
442 |
if (sign == PLUS && magnitude > sttab[STP][c].extremum) |
|
|
443 |
sttab[STP][c].extremum = magnitude; |
|
|
444 |
else if (sign == MINUS && |
|
|
445 |
magnitude > sttab[STN][c].extremum) |
|
|
446 |
sttab[STN][c].extremum = magnitude; |
|
|
447 |
break; |
|
|
448 |
case STCH2: /* end of ST change episode */ |
|
|
449 |
if (sign == PLUS) { |
|
|
450 |
sttab[STP][c].episodes++; |
|
|
451 |
sttab[STP][c].duration += annot.time - s0[STP][c]; |
|
|
452 |
s0[STP][c] = 0L; |
|
|
453 |
} |
|
|
454 |
else if (sign == MINUS) { |
|
|
455 |
sttab[STN][c].episodes++; |
|
|
456 |
sttab[STN][c].duration += annot.time - s0[STN][c]; |
|
|
457 |
s0[STN][c] = 0L; |
|
|
458 |
} |
|
|
459 |
break; |
|
|
460 |
case TCH0: /* beginning of T change episode */ |
|
|
461 |
if (sign == PLUS) { |
|
|
462 |
t_data = 1; |
|
|
463 |
s0[TP][c] = annot.time; |
|
|
464 |
} |
|
|
465 |
else if (sign == MINUS) { |
|
|
466 |
t_data = 1; |
|
|
467 |
s0[TN][c] = annot.time; |
|
|
468 |
} |
|
|
469 |
else if (sign == XPLUS) { |
|
|
470 |
t_data = 1; |
|
|
471 |
s0[TXP][c] = annot.time; |
|
|
472 |
} |
|
|
473 |
else if (sign == XMINUS) { |
|
|
474 |
t_data = 1; |
|
|
475 |
s0[TXN][c] = annot.time; |
|
|
476 |
} |
|
|
477 |
else if (sign == BIPHASIC) { |
|
|
478 |
t_data = 1; |
|
|
479 |
s0[TBP][c] = annot.time; |
|
|
480 |
} |
|
|
481 |
break; |
|
|
482 |
case TCH1: /* extremum of T change */ |
|
|
483 |
if ((sign == PLUS || sign == XPLUS) && |
|
|
484 |
magnitude > sttab[TP][c].extremum) |
|
|
485 |
sttab[TP][c].extremum = magnitude; |
|
|
486 |
else if ((sign == MINUS || sign == XMINUS) && |
|
|
487 |
magnitude > sttab[TN][c].extremum) |
|
|
488 |
sttab[TN][c].extremum = magnitude; |
|
|
489 |
break; |
|
|
490 |
case TCH2: /* end of T change episode */ |
|
|
491 |
if (sign == PLUS) { |
|
|
492 |
sttab[TP][c].episodes++; |
|
|
493 |
sttab[TP][c].duration += annot.time - s0[TP][c]; |
|
|
494 |
s0[TP][c] = 0L; |
|
|
495 |
} |
|
|
496 |
else if (sign == MINUS) { |
|
|
497 |
sttab[TN][c].episodes++; |
|
|
498 |
sttab[TN][c].duration += annot.time - s0[TN][c]; |
|
|
499 |
s0[TN][c] = 0L; |
|
|
500 |
} |
|
|
501 |
else if (sign == XPLUS) { |
|
|
502 |
sttab[TXP][c].episodes++; |
|
|
503 |
sttab[TXP][c].duration += annot.time - s0[TXP][c]; |
|
|
504 |
s0[TXP][c] = 0L; |
|
|
505 |
} |
|
|
506 |
else if (sign == XMINUS) { |
|
|
507 |
sttab[TXN][c].episodes++; |
|
|
508 |
sttab[TXN][c].duration += annot.time - s0[TXN][c]; |
|
|
509 |
s0[TXN][c] = 0L; |
|
|
510 |
} |
|
|
511 |
else if (sign == BIPHASIC) { |
|
|
512 |
sttab[TBP][c].episodes++; |
|
|
513 |
sttab[TBP][c].duration += annot.time - s0[TBP][c]; |
|
|
514 |
s0[TBP][c] = 0L; |
|
|
515 |
} |
|
|
516 |
break; |
|
|
517 |
default: |
|
|
518 |
break; |
|
|
519 |
} |
|
|
520 |
} |
|
|
521 |
} |
|
|
522 |
else if (annot.anntyp == NOISE) { |
|
|
523 |
/* Don't count the interval from the beginning of the record to |
|
|
524 |
the first signal quality label as `clean' unless the first beat |
|
|
525 |
label occurs before the first signal quality label. */ |
|
|
526 |
if (tq3 > 0L) { |
|
|
527 |
ntab[noise].episodes++; |
|
|
528 |
ntab[noise].duration += annot.time - n0; |
|
|
529 |
n0 = annot.time; |
|
|
530 |
} |
|
|
531 |
noise = annot.subtyp & 0xff; |
|
|
532 |
|
|
|
533 |
/* Unreadable segments invalidate rate measurements. */ |
|
|
534 |
if ((noise & umask) == umask) rlen = -1; |
|
|
535 |
} |
|
|
536 |
} |
|
|
537 |
|
|
|
538 |
/* At the end of the annotation file, count any run in progress and adjust |
|
|
539 |
the counters for the current rhythm and noise type, and ST and T states. |
|
|
540 |
*/ |
|
|
541 |
if (a) aupdate(a); |
|
|
542 |
if (v) aupdate(v); |
|
|
543 |
if (strtim("e") > annot.time) annot.time = strtim("e"); |
|
|
544 |
rtab[rhythm].episodes++; |
|
|
545 |
rtab[rhythm].duration += annot.time - r0; |
|
|
546 |
for (c = 0; c < nsig; c++) { |
|
|
547 |
for (i = 0; i < N_STYPES; i++) |
|
|
548 |
if (s0[i][c] > 0L) { |
|
|
549 |
sttab[i][c].episodes++; |
|
|
550 |
sttab[i][c].duration += annot.time - s0[i][c]; |
|
|
551 |
} |
|
|
552 |
if (sttab[TXP][c].episodes > 0) |
|
|
553 |
sttab[TXP][c].extremum = sttab[TP][c].extremum; |
|
|
554 |
if (sttab[TXN][c].episodes > 0) |
|
|
555 |
sttab[TXN][c].extremum = sttab[TN][c].extremum; |
|
|
556 |
} |
|
|
557 |
ntab[noise].episodes++; |
|
|
558 |
ntab[noise].duration += annot.time - n0; |
|
|
559 |
|
|
|
560 |
/* Read the first line of info, if any. */ |
|
|
561 |
infop = getinfo(record); |
|
|
562 |
if (infop == NULL) |
|
|
563 |
info_type = NO_INFO; |
|
|
564 |
else { |
|
|
565 |
while (*infop == ' ' || *infop == '\t') |
|
|
566 |
infop++; |
|
|
567 |
if (*infop == 'A') { /* `Age: ...' as in European ST-T DB */ |
|
|
568 |
sscanf(infop, "Age: %d Sex: %s", &age, sex); |
|
|
569 |
info_type = EDB; |
|
|
570 |
} |
|
|
571 |
else if (*infop == 'R') { /* `Reference: ...' as in VALE DB */ |
|
|
572 |
age = -1; sex[0] = '?'; |
|
|
573 |
info_type = VALEDB; |
|
|
574 |
} |
|
|
575 |
else { /* fixed format as in MIT DB */ |
|
|
576 |
sscanf(infop, "%d%s", &age, sex); |
|
|
577 |
info_type = MITDB; |
|
|
578 |
} |
|
|
579 |
} |
|
|
580 |
|
|
|
581 |
/* Start a "keep" (to force troff to print the following section in a |
|
|
582 |
single column), and print the section header line. */ |
|
|
583 |
printf(".KS\n.SH\n"); |
|
|
584 |
|
|
|
585 |
printf("Record %s (", record); |
|
|
586 |
for (i = 0; i < nsig; i++) { |
|
|
587 |
if (i > 0) fputs(", ", stdout); |
|
|
588 |
fputs(si[i].desc, stdout); |
|
|
589 |
} |
|
|
590 |
fputs("; ", stdout); |
|
|
591 |
switch (sex[0]) { |
|
|
592 |
case 'f': |
|
|
593 |
case 'F': fputs("female, age ", stdout); break; |
|
|
594 |
case 'm': |
|
|
595 |
case 'M': fputs("male, age ", stdout); break; |
|
|
596 |
default: fputs("age ", stdout); break; |
|
|
597 |
} |
|
|
598 |
if (age > 0) printf("%d)\n", age); |
|
|
599 |
else fputs("not recorded)\n", stdout); |
|
|
600 |
|
|
|
601 |
switch (info_type) { |
|
|
602 |
case MITDB: |
|
|
603 |
/* Print the medications section (the second line of info). */ |
|
|
604 |
if (infop = getinfo(NULL)) { |
|
|
605 |
while (*infop == ' ' || *infop == '\t') |
|
|
606 |
infop++; |
|
|
607 |
printf(".LP\n\\fIMedications:\\fR %s\n", infop); |
|
|
608 |
} |
|
|
609 |
break; |
|
|
610 |
default: |
|
|
611 |
break; |
|
|
612 |
} |
|
|
613 |
|
|
|
614 |
/* Print the beat table. */ |
|
|
615 |
printf(".TS\nexpand;\nlw(1i) c c c\nl r r r.\n"); |
|
|
616 |
printf("\\fIBeats\tBefore 5:00\tAfter 5:00\tTotal\\fR\n"); |
|
|
617 |
bstats(NORMAL, "Normal"); |
|
|
618 |
bstats(LBBB, "Left BBB"); |
|
|
619 |
bstats(RBBB, "Right BBB"); |
|
|
620 |
bstats(APC, "APC"); |
|
|
621 |
bstats(ABERR, "Aberrated APC"); |
|
|
622 |
bstats(NPC, "Junctional premature"); |
|
|
623 |
bstats(SVPB, "SVPC"); |
|
|
624 |
bstats(PVC, "PVC"); |
|
|
625 |
bstats(RONT, "R-on-T PVC"); |
|
|
626 |
bstats(FUSION, "Fusion PVC"); |
|
|
627 |
bstats(FLWAV, "Ventricular flutter wave"); |
|
|
628 |
bstats(AESC, "Atrial escape"); |
|
|
629 |
bstats(NESC, "Junctional escape"); |
|
|
630 |
bstats(SVESC, "Supraventricular escape"); |
|
|
631 |
bstats(VESC, "Ventricular escape"); |
|
|
632 |
bstats(PACE, "Paced"); |
|
|
633 |
bstats(PFUS, "Pacemaker fusion"); |
|
|
634 |
bstats(NAPC, "Blocked APC"); |
|
|
635 |
bstats(UNKNOWN, "Unclassifiable"); |
|
|
636 |
printf("\\fITotal\t%ld\t%ld\t%ld\\fR\n", lsum, tsum, lsum+tsum); |
|
|
637 |
printf(".TE\n.KE\n"); |
|
|
638 |
|
|
|
639 |
/* Print the supraventricular ectopy table, if necessary. */ |
|
|
640 |
if (artab[0].len > 1 || artab[0].nruns > 1 || artab[1].len > 0) { |
|
|
641 |
int i, j, k, l; |
|
|
642 |
|
|
|
643 |
printf(".KS\n.TS\nlw(1.125i) l.\n"); |
|
|
644 |
printf("\\fISupraventricular ectopy:\\fR"); |
|
|
645 |
for (i = 0; i < N_RLEN; i++) { |
|
|
646 |
for (j = 0, l = 9999; j < N_RLEN; j++) |
|
|
647 |
if (0 < artab[j].len && artab[j].len < l) l = artab[k = j].len; |
|
|
648 |
if (l == 9999) break; |
|
|
649 |
switch (l) { |
|
|
650 |
case 1: |
|
|
651 |
printf("\t%d isolated beat%s\n", |
|
|
652 |
artab[k].nruns, (artab[k].nruns > 1) ? "s" : ""); |
|
|
653 |
break; |
|
|
654 |
case 2: |
|
|
655 |
printf("\t%d couplet%s\n", |
|
|
656 |
artab[k].nruns, (artab[k].nruns > 1) ? "s" : ""); |
|
|
657 |
break; |
|
|
658 |
default: |
|
|
659 |
printf("\t%d run%s of %d beats\n", |
|
|
660 |
artab[k].nruns, (artab[k].nruns > 1) ? "s" : "", |
|
|
661 |
artab[k].len); |
|
|
662 |
break; |
|
|
663 |
} |
|
|
664 |
artab[k].len = 0; |
|
|
665 |
} |
|
|
666 |
printf(".TE\n.KE\n"); |
|
|
667 |
} |
|
|
668 |
|
|
|
669 |
/* Print the ventricular ectopy table, if necessary. */ |
|
|
670 |
if (vrtab[0].len > 1 || vrtab[0].nruns > 1 || vrtab[1].len > 0) { |
|
|
671 |
int i, j, k, l; |
|
|
672 |
|
|
|
673 |
printf(".KS\n.TS\nlw(1.125i) l.\n"); |
|
|
674 |
printf("\\fIVentricular ectopy:\\fR"); |
|
|
675 |
for (i = 0; i < N_RLEN; i++) { |
|
|
676 |
for (j = 0, l = 9999; j < N_RLEN; j++) |
|
|
677 |
if (0 < vrtab[j].len && vrtab[j].len < l) l = vrtab[k = j].len; |
|
|
678 |
if (l == 9999) break; |
|
|
679 |
switch (l) { |
|
|
680 |
case 1: |
|
|
681 |
printf("\t%d isolated beat%s\n", |
|
|
682 |
vrtab[k].nruns, (vrtab[k].nruns > 1) ? "s" : ""); |
|
|
683 |
break; |
|
|
684 |
case 2: |
|
|
685 |
printf("\t%d couplet%s\n", |
|
|
686 |
vrtab[k].nruns, (vrtab[k].nruns > 1) ? "s" : ""); |
|
|
687 |
break; |
|
|
688 |
default: |
|
|
689 |
printf("\t%d run%s of %d beats\n", |
|
|
690 |
vrtab[k].nruns, (vrtab[k].nruns > 1) ? "s" : "", |
|
|
691 |
vrtab[k].len); |
|
|
692 |
break; |
|
|
693 |
} |
|
|
694 |
vrtab[k].len = 0; |
|
|
695 |
} |
|
|
696 |
printf(".TE\n.KE\n"); |
|
|
697 |
} |
|
|
698 |
|
|
|
699 |
/* Print the rhythm table. */ |
|
|
700 |
printf(".KS\n.TS\nexpand;\nlw c rw(0.4i) rw(0.4i)\nl c n r.\n"); |
|
|
701 |
printf("\\fIRhythm\tRate\tEpisodes\tDuration\\fR\n"); |
|
|
702 |
for (i = 0; i < N_RTYPES; i++) |
|
|
703 |
if (rtab[i].episodes != 0L) { |
|
|
704 |
printf("%s\t", rtab[i].rslong); |
|
|
705 |
if (rtab[i].max3r > 0) |
|
|
706 |
printf("%d", minrate = (int)(t3min/rtab[i].max3r + 0.5)); |
|
|
707 |
else |
|
|
708 |
minrate = 0; |
|
|
709 |
if (rtab[i].min3r != 0xffff) { |
|
|
710 |
maxrate = (int)(t3min/rtab[i].min3r + 0.5); |
|
|
711 |
if (maxrate > minrate) printf("\\-%d", maxrate); |
|
|
712 |
} |
|
|
713 |
else if (minrate == 0) |
|
|
714 |
printf("\\-"); |
|
|
715 |
printf("\t%ld\t%s\n", rtab[i].episodes, timstr(rtab[i].duration)); |
|
|
716 |
} |
|
|
717 |
printf(".TE\n.KE\n"); |
|
|
718 |
|
|
|
719 |
/* Print the ST and T-change table, if available. */ |
|
|
720 |
if (st_data || t_data) { |
|
|
721 |
printf(".KS\n.TS\nexpand;\nl"); |
|
|
722 |
if (st_calibrated) printf(" r"); |
|
|
723 |
printf(" rw(0.4i) rw(0.4i)\nl"); |
|
|
724 |
if (st_calibrated) printf(" n"); |
|
|
725 |
printf(" n r.\n\\fIST\\-T state"); |
|
|
726 |
if (st_calibrated) printf("\tExtremum"); |
|
|
727 |
printf("\tEpisodes\tDuration\\fR\n"); |
|
|
728 |
for (c = 0; c < nsig; c++) { |
|
|
729 |
int header_printed = 0; |
|
|
730 |
|
|
|
731 |
for (i = 0; i < N_STYPES; i++) { |
|
|
732 |
if (sttab[i][c].episodes != 0L) { |
|
|
733 |
if (header_printed == 0) { |
|
|
734 |
switch (nsig) { |
|
|
735 |
case 1: |
|
|
736 |
break; |
|
|
737 |
case 2: |
|
|
738 |
if (c == 0) printf("\\fI(upper signal)\\fR\n"); |
|
|
739 |
else printf("\\fI(lower signal)\\fR\n"); |
|
|
740 |
break; |
|
|
741 |
case 3: |
|
|
742 |
if (c == 0) printf("\\fI(upper signal)\\fR\n"); |
|
|
743 |
else if (c == 1) |
|
|
744 |
printf("\\fI(middle signal)\\fR\n"); |
|
|
745 |
else printf("\\fI(lower signal)\\fR\n"); |
|
|
746 |
break; |
|
|
747 |
default: |
|
|
748 |
printf("(signal %d)\n", c); |
|
|
749 |
break; |
|
|
750 |
} |
|
|
751 |
header_printed = 1; |
|
|
752 |
} |
|
|
753 |
printf("%s\t", sttab[i][c].ststring); |
|
|
754 |
if (st_calibrated) { |
|
|
755 |
if (sttab[i][c].extremum > 0) { |
|
|
756 |
switch (i) { |
|
|
757 |
case STP: |
|
|
758 |
case TP: |
|
|
759 |
case TXP: printf("\\(pl"); break; |
|
|
760 |
case STN: |
|
|
761 |
case TN: |
|
|
762 |
case TXN: printf("\\(mi"); break; |
|
|
763 |
} |
|
|
764 |
printf("%d\t", sttab[i][c].extremum); |
|
|
765 |
} |
|
|
766 |
else |
|
|
767 |
printf("\\-\t"); |
|
|
768 |
} |
|
|
769 |
printf("%ld\t%s\n", sttab[i][c].episodes, |
|
|
770 |
timstr(sttab[i][c].duration)); |
|
|
771 |
} |
|
|
772 |
} |
|
|
773 |
} |
|
|
774 |
printf(".TE\n.KE\n"); |
|
|
775 |
} |
|
|
776 |
|
|
|
777 |
/* Print the signal quality table. */ |
|
|
778 |
printf(".KS\n.TS\nexpand;\nl rw(0.4i) rw(0.4i)\nl n r.\n"); |
|
|
779 |
printf("\\fISignal quality\tEpisodes\tDuration\\fR\n"); |
|
|
780 |
for (i = 0; i < N_NTYPES; i++) |
|
|
781 |
if (ntab[i].episodes != 0L) { |
|
|
782 |
if (ntab[i].nstring == NULL) { |
|
|
783 |
static char ns[40]; |
|
|
784 |
|
|
|
785 |
sprintf(ns, "Signal quality code %d", i); |
|
|
786 |
ntab[i].nstring = ns; |
|
|
787 |
} |
|
|
788 |
printf("%s\t%ld\t%s\n", ntab[i].nstring, ntab[i].episodes, |
|
|
789 |
timstr(ntab[i].duration)); |
|
|
790 |
} |
|
|
791 |
printf(".TE\n"); /* (the "keep" ends after the "notes" section) */ |
|
|
792 |
|
|
|
793 |
/* Print a "notes" section if there is any additional info available. */ |
|
|
794 |
switch (info_type) { |
|
|
795 |
case EDB: |
|
|
796 |
if (infop = getinfo(NULL)) { |
|
|
797 |
while (*infop == ' ' || *infop == '\t') |
|
|
798 |
infop++; |
|
|
799 |
if ('a' <= *infop && *infop <= 'z') *infop += 'A' - 'a'; |
|
|
800 |
printf(".IP \\fINotes:\\fR .375i\n%s\n", infop); |
|
|
801 |
while (infop = getinfo(NULL)) { |
|
|
802 |
while (*infop == ' ' || *infop == '\t') |
|
|
803 |
infop++; |
|
|
804 |
printf(".br\n%s\n", infop); |
|
|
805 |
} |
|
|
806 |
} |
|
|
807 |
else |
|
|
808 |
printf(".LP\n"); |
|
|
809 |
break; |
|
|
810 |
case MITDB: |
|
|
811 |
if (infop = getinfo(NULL)) { |
|
|
812 |
while (*infop == ' ' || *infop == '\t') |
|
|
813 |
infop++; |
|
|
814 |
printf(".IP \\fINotes:\\fR .375i\n%s\n", infop); |
|
|
815 |
while (infop = getinfo(NULL)) { |
|
|
816 |
while (*infop == ' ' || *infop == '\t') |
|
|
817 |
infop++; |
|
|
818 |
printf("%s\n", infop); |
|
|
819 |
} |
|
|
820 |
} |
|
|
821 |
else |
|
|
822 |
printf(".LP\n"); |
|
|
823 |
break; |
|
|
824 |
case VALEDB: |
|
|
825 |
if (infop = getinfo(NULL)) { |
|
|
826 |
while (*infop == ' ' || *infop == '\t') |
|
|
827 |
infop++; |
|
|
828 |
if (strncmp(infop, "Reference:", 10) == 0) |
|
|
829 |
infop = getinfo(NULL); |
|
|
830 |
} |
|
|
831 |
if (infop) { |
|
|
832 |
while (*infop == ' ' || *infop == '\t') |
|
|
833 |
infop++; |
|
|
834 |
printf(".IP \\fINotes:\\fR .375i\n%s\n", infop); |
|
|
835 |
while (infop = getinfo(NULL)) { |
|
|
836 |
while (*infop == ' ' || *infop == '\t') |
|
|
837 |
infop++; |
|
|
838 |
printf(".br\n%s\n", infop); |
|
|
839 |
} |
|
|
840 |
} |
|
|
841 |
else |
|
|
842 |
printf(".LP\n"); |
|
|
843 |
break; |
|
|
844 |
default: |
|
|
845 |
printf(".LP\n"); |
|
|
846 |
break; |
|
|
847 |
} |
|
|
848 |
printf(".KE\n"); |
|
|
849 |
|
|
|
850 |
/* Close the database files and quit. */ |
|
|
851 |
dbquit(); |
|
|
852 |
exit(0); |
|
|
853 |
} |
|
|
854 |
|
|
|
855 |
setrtab(i, rst, rsl) |
|
|
856 |
int i; |
|
|
857 |
char *rst, *rsl; |
|
|
858 |
{ |
|
|
859 |
if (0 <= i && i < N_RTYPES) { |
|
|
860 |
rtab[i].episodes = 0L; |
|
|
861 |
rtab[i].duration = strtim("0.5"); |
|
|
862 |
rtab[i].rstring = rst; |
|
|
863 |
rtab[i].rslong = rsl; |
|
|
864 |
rtab[i].min3r = 0xffff; |
|
|
865 |
rtab[i].max3r = 0; |
|
|
866 |
} |
|
|
867 |
} |
|
|
868 |
|
|
|
869 |
setstab(i, signal, sst) |
|
|
870 |
int i, signal; |
|
|
871 |
char *sst; |
|
|
872 |
{ |
|
|
873 |
if (0 <= i && i < N_STYPES && 0 <= signal && signal < MAXSIG) { |
|
|
874 |
sttab[i][signal].episodes = 0L; |
|
|
875 |
sttab[i][signal].duration = strtim("0.5"); |
|
|
876 |
sttab[i][signal].ststring = sst; |
|
|
877 |
sttab[i][signal].extremum = 0; |
|
|
878 |
} |
|
|
879 |
} |
|
|
880 |
|
|
|
881 |
setntab(i, nst) |
|
|
882 |
int i; |
|
|
883 |
char *nst; |
|
|
884 |
{ |
|
|
885 |
if (0 <= i && i < N_NTYPES) { |
|
|
886 |
ntab[i].episodes = 0L; |
|
|
887 |
ntab[i].duration = strtim("0.5"); |
|
|
888 |
ntab[i].nstring = nst; |
|
|
889 |
} |
|
|
890 |
} |
|
|
891 |
|
|
|
892 |
bstats(i, s) /* print a line of the beat table if beats of type i were seen */ |
|
|
893 |
int i; |
|
|
894 |
char *s; /* English description of beat type i */ |
|
|
895 |
{ |
|
|
896 |
if (btab[i].tcount > 0L || btab[i].lcount > 0L) { |
|
|
897 |
printf("%s\t", s); |
|
|
898 |
if (btab[i].lcount > 0L) { |
|
|
899 |
printf("%ld\t", btab[i].lcount); |
|
|
900 |
lsum += btab[i].lcount; |
|
|
901 |
} |
|
|
902 |
else |
|
|
903 |
printf("\\-\t"); |
|
|
904 |
if (btab[i].tcount > 0L) { |
|
|
905 |
printf("%ld\t", btab[i].tcount); |
|
|
906 |
tsum += btab[i].tcount; |
|
|
907 |
} |
|
|
908 |
else |
|
|
909 |
printf("\\-\t"); |
|
|
910 |
printf("%ld\n", btab[i].lcount + btab[i].tcount); |
|
|
911 |
} |
|
|
912 |
} |
|
|
913 |
|
|
|
914 |
aupdate(i) /* Record that an i-beat SV run was observed */ |
|
|
915 |
int i; |
|
|
916 |
{ |
|
|
917 |
int j; |
|
|
918 |
|
|
|
919 |
for (j = 0; j < N_RLEN-1; j++) { |
|
|
920 |
if (artab[j].len == i) break; |
|
|
921 |
else if (artab[j].len == 0) { artab[j].len = i; break; } |
|
|
922 |
} |
|
|
923 |
artab[j].nruns++; |
|
|
924 |
} |
|
|
925 |
|
|
|
926 |
vupdate(i) /* Record that an i-beat V run was observed */ |
|
|
927 |
int i; |
|
|
928 |
{ |
|
|
929 |
int j; |
|
|
930 |
|
|
|
931 |
for (j = 0; j < N_RLEN-1; j++) { |
|
|
932 |
if (vrtab[j].len == i) break; |
|
|
933 |
else if (vrtab[j].len == 0) { vrtab[j].len = i; break; } |
|
|
934 |
} |
|
|
935 |
vrtab[j].nruns++; |
|
|
936 |
} |