Leipzig Heart Center ECG-Database: Arrhythmias in Children and Patients with Congenital Heart Disease
This dataset contains annotated ECG recordings from 29 unique children and 10 unique adults. Each patient’s data is organized into three separate files.
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Header File (.hea): This file provides metadata about the ECG recordings, including the number of channels, sampling frequency, and signal gain, essential for understanding and processing the ECG data correctly.
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Data File (.dat): This file contains the actual ECG signal data, allowing detailed analysis and application of processing algorithms.
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Annotation File (.atr): This file includes annotations of the ECG signals, detailing various cardiac events and rhythms identified by expert analysis, which are crucial for training and validating diagnostic algorithms.
The files are systematically named to reflect the patient group: filenames x001 through x029 represent children's ECGs, while x100 through x109 denote adult patients' ECGs.
Channels
Every recording of the children (x001 - x0029) includes the standard 12-lead electrocardiogram (ECG) channels (I, II, III, aVR, aVL, aVF, V1, V2, V3, V4, V5, V6) as well as intracardiac electrograms (IEGMs) from the following: a hexapolar coronary sinus catheter (5 leads), a catheter positioned in the right ventricular apex (1 lead), and an ablation catheter (1 lead).
The recordings of the adults (x100 - x109) include the 12-lead ECG and IEGMs from the catheter in the right ventricular apex (1 lead), the ablation catheter (1 lead), and, in some studies, the coronary sinus catheter (5 leads).
Overview of the Intracardiac electrograms leads:
| IEGM | Description |
|---|---|
| ABL12 | Ablation and mapping catheter (distal electrodes) |
| CS12 | Coronary sinus electrodes 1/2 (distal) |
| CS34 | Coronary sinus electrodes 3/4 |
| CS56 | Coronary sinus electrodes 5/6 |
| CS78 | Coronary sinus electrodes 7/8 |
| CS90 | Coronary sinus electrodes 9/10 (proximal) |
| RVA12 | Catheter in the right ventricular apex (distal electrodes) |
Annotations
The database consists in total of 113924 annotated beats. The types of beats and portion are presented in this table.
| Explanation of Beats | Symbol | Aux String |
|---|---|---|
| Sinus rhythm | ||
| Normal beats | N | |
| Preexcitation* | N | N-Prex |
| Complete right bundle branch block | R | |
| Complete left bundle branch block | L | |
| AV-Block 1°# | b | BI |
| Junctional escape beats | j | |
| Tachycardias | ||
| Ventricular Tachycardia# | X | VT |
| Accelerated Idioventricular Rhythm# | X | IVR |
| Supraventricular Tachycardia | ||
| Atrioventricular reentrant tachycardia# | X | AVRT |
| Atrioventricular nodal reentrant tachycardia# | X | AVNRT |
| Aberrated AVRT# | X | avrt |
| Aberrated AVNRT# | X | avnrt |
| AVNRT with AV-Block 2°# | X | AVNRT+BII |
| Atrial Tachycardia | ||
| Atrial Fibrillation# | X | AFIB |
| Ectopic atrial tachycardia# | X | EAT |
| Atrial Flutter# | X | AFL |
| Premature Beats | ||
| Premature atrial beats | A | |
| Aberrated premature atrial beats | a | |
| Preexcitated premature atrial beats* | A | A-Prex |
| Premature ventricular beats | V | |
| Fusion beats | F | |
| Premature junctional beats | J | |
| Paced beats | ||
| Atrial Paced beats* | / | /A |
| Ventricular Paced beats* | / | /V |
| Fusion of Ventricular paced beat and Normal Beat | f |
*custom Aux Strings for standard WFDB annotations to further specify these annotations.
# custom annotations used in addition to the standard WFDB annotations
The dataset also includes rhytm annotations:
| Explanation of Rhythm | Symbol | Aux String |
|---|---|---|
| Sinus rhythm | + | (N |
| Tachycardias | ||
| Ventricular Tachycardia | + | (VT |
| Accelerated Idioventricular Rhythm | + | (IVR |
| Supraventricular Tachycardia | ||
| Atrioventricular reentrant tachycardia | + | (AVRT |
| Atrioventricular nodal reentrant tachcardia | + | (AVNRT |
| Atrial Tachycardia | ||
| Atrial Fibrillation | + | (AFIB |
| Ectopic atrial tachycardia | + | (EAT |
| Atrial Flutter | + | (AFL |
| Ectopic rhythm | ||
| Ectopic atrial rhythm | + | (A |
| Ventricular bigeminy rhythm | + | (B |
| Junctional rhythm | + | (J |
| Paced beats | ||
| Atrial Paced rhythm | + | (/A |
| Ventricular Paced rhythm | + | (/V |
Geting started
The database can be accessed using Python and the WFDB software package.
Prerequisite
- Configured python environment
- Install the wfdb python package
sh
pip install wfdb
View the data
To view the data using python you can use this script:
Note: To work in this configuration the database files and the python file has to be in the root folder of the project.
import wfdb
filename = "x008"
title="Record " + filename
# 0 -> I, 1 -> II etc.
# channels = [0,1,2,3,4,5,6,7,8,9,10,11]
channels = [0]
frequenz = 977
hour = 3600
min = 60
# ECG from 1:30 to 1:50
samplesTo = (1*min + 50) *frequenz
samplesFrom = (1*min +30) *frequenz
record = wfdb.rdrecord(filename, channels=channels, sampfrom=samplesFrom, sampto=samplesTo)
annotation = wfdb.rdann(filename, 'atr', sampfrom=samplesFrom, sampto=samplesTo, shift_samps=True)
wfdb.plot_wfdb(record=record, annotation=annotation, figsize=(24,18) , title=title, time_units='seconds')