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Greta Miller
Greta-Miller/
B-cellNon-HodgkinLymphoma
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# Global table of copy number and copy number neutral of heterozygosity (CNN-LOH) alterations identified in 24 samples from 18 R/R B-NHL patients. Unnamed: 1 Unnamed: 2 Unnamed: 3 Unnamed: 4 Unnamed: 5 Unnamed: 6 Unnamed: 7
1 ID DNA Chromosome Event Length Cytoband Probe Median Time-point of sample obtention
2 R7D D5033 chr2:21,494-89,163,773 CN Gain 89142280 p25.3 - p11.2 0.34501873 Diagnosis
3 R7D D5033 chr2:216,783,409-243,052,331 CN Gain 26268923 q35 - q37.3 0.42433241 Diagnosis
4 R7D D5033 chr6:204,909-33,708,169 LOH 33503261 p25.3 - p21.31 0.016505187 Diagnosis
5 R7D D5033 chr7:41,421-56,366,411 CN Loss 56324991 p22.3 - p11.2 -0.389688402 Diagnosis
6 R7D D5033 chr7:82,620,076-112,236,153 High Copy Gain 29616078 q21.11 - q31.1 0.974462628 Diagnosis
7 R7D D5033 chr7:112,261,226-122,492,340 CN Loss 10231115 q31.1 - q31.32 -0.430492222 Diagnosis
8 R7D D5033 chr7:122,502,122-128,025,549 High Copy Gain 5523428 q31.32 - q32.1 0.815663934 Diagnosis
9 R7D D5033 chr7:155,574,561-159,118,443 CN Loss 3543883 q36.3 -0.433030277 Diagnosis
10 R7D D5033 chr9:204,738-21,499,299 CN Gain 21294562 p24.3 - p21.3 0.29982385 Diagnosis
11 R7D D5033 chr9:204,738-34,071,144 LOH 33866407 p24.3 - p13.3 0.25140731 Diagnosis
12 R7D D5033 chr9:21,520,274-22,488,678 Homozygous Copy Loss 968405 p21.3 -1.491081238 Diagnosis
13 R7D D5033 chr9:22,499,958-141,054,761 CN Gain 118554804 p21.3 - q34.3 0.322941363 Diagnosis
14 R7D D5033 chr10:64,251,977-135,434,303 LOH 71182327 q21.2 - q26.3 -0.076740257 Diagnosis
15 R7D D5033 chr11:128,041,582-128,663,126 CN Gain 621545 q24.3 0.609927773 Diagnosis
16 R7D D5033 chr12:189,400-133,818,115 CN Gain 133628716 p13.33 - q24.33 0.321567863 Diagnosis
17 R7D D5033 chr15:37,317,437-102,397,317 LOH 65079881 q14 - q26.3 -0.059750201 Diagnosis
18 R7D D5033 chr22:16,054,713-25,083,454 CN Gain 9028742 q11.1 - q11.23 0.406559557 Diagnosis
19 R7D D5033 chr22:25,896,979-51,213,826 CN Gain 25316848 q11.23 - q13.33 0.318812966 Diagnosis
20 R7D D5033 chrY:2,660,163-28,799,935 Homozygous Copy Loss 26139773 p11.31 - q11.23 -2.17672205 Diagnosis
21 R10D D5053 chr6:1-37,562,640 LOH 37562640 p25.3 - p21.2 0.107124761 Diagnosis
22 R10D D5053 chr7:79,441,376-159,118,443 CN Gain 79677068 q21.11 - q36.3 0.269684747 Diagnosis
23 R10D D5053 chr13:91,491,721-99,170,520 CN Gain 7678800 q31.3 - q32.2 0.332274169 Diagnosis
24 R10D D5053 chr13:99,181,647-115,103,150 CN Loss 15921504 q32.2 - q34 -0.571985334 Diagnosis
25 R10D D5053 chr17:400,959-20,749,243 LOH 20348285 p13.3 - p11.2 -0.087888613 Diagnosis
26 R10D D5053 chrY:2,660,163-5,864,279 Homozygous Copy Loss 3204117 p11.31 - p11.2 -1.163925886 Diagnosis
27 R21D D4895 chr1:150,091,611-182,942,202 CN Gain 32850592 q21.2 - q25.3 0.329842865 Diagnosis
28 R21D D4895 chr1:182,825,748-249,212,878 LOH 66387131 q25.3 - q44 -0.110791318 Diagnosis
29 R21D D4895 chr3:102,323,797-131,263,491 CN Loss 30216090 q12.3 - q22.1 -0.506377667 Diagnosis
30 R21D D4895 chr8:172,417-16,124,762 CN Gain 15952346 p23.3 - p22 0.181538329 Diagnosis
31 R22D D4898 chr1:754,192-46,075,107 LOH 45320916 p36.33 - p34.1 0.000319 Diagnosis
32 R22D D4898 chr1:144,759,610-181,572,457 CN Gain 36812848 q21.1 - q25.3 0.535386682 Diagnosis
33 R22D D4898 chr2:3,854,573-13,591,475 CN Loss 9736903 p25.3 - p24.3 -0.176376142 Diagnosis
34 R22D D4898 chr2:13,607,602-16,528,803 Homozygous Copy Loss 2921202 p24.3 -0.4161143 Diagnosis
35 R22D D4898 chr2:16,556,128-50,519,278 CN Loss 33963151 p24.3 - p16.3 -0.144592196 Diagnosis
36 R22D D4898 chr2:99,645,055-100,877,370 CN Gain 1232316 q11.2 0.377984583 Diagnosis
37 R22D D4898 chr8:172,417-2,375,661 CN Gain 2203245 p23.3 - p23.2 0.164376937 Diagnosis
38 R22D D4898 chr8:2,381,726-3,460,445 High Copy Gain 1078720 p23.2 0.634660929 Diagnosis
39 R22D D4898 chr8:3,463,535-131,745,284 CN Gain 128281750 p23.2 - q24.22 0.174310714 Diagnosis
40 R22D D4898 chr9:70,984,372-141,054,761 LOH 70070390 q21.11 - q34.3 -0.042148629 Diagnosis
41 R22D D4898 chr11:128,288,947-128,673,160 High Copy Gain 384214 q24.3 0.500761986 Diagnosis
42 R22D D4898 chr13:64,532,484-96,918,833 CN Gain 32386350 q21.31 - q32.1 0.328681141 Diagnosis
43 R22D D4898 chr17:400,959-21,944,675 CN Loss 21543717 p13.3 - p11.2 -0.726622462 Diagnosis
44 R22D D4898 chr22:22,323,568-23,710,483 CN Gain 1386916 q11.22 - q11.23 0.605351657 Diagnosis
45 R22D D4898 chrY:2,660,163-9,345,232 Homozygous Copy Loss 6685070 p11.31 - p11.2 -3.289373517 Diagnosis
46 R24D D4987 chr1:156,060,785-160,681,775 LOH 4620991 q22 - q23.3 0.27504839 Diagnosis
47 R24D D4987 chr8:10,540,931-11,491,128 CN Gain 950198 p23.1 0.496453553 Diagnosis
48 R24D D4987 chr16:59,166,579-76,954,006 CN Gain 17787428 q21 - q23.1 0.479880035 Diagnosis
49 R24D D4987 chr16:66,282,156-70,543,083 LOH 4260928 q21 - q22.1 0.457667649 Diagnosis
50 R24D D4987 chr16:76,969,076-77,377,830 High Copy Gain 408755 q23.1 0.703459203 Diagnosis
51 R24D D4987 chr16:77,383,780-84,091,105 CN Gain 6707326 q23.1 - q23.3 0.42123732 Diagnosis
52 R24D D4987 chr16:84,091,106-86,451,512 High Copy Gain 2360407 q23.3 - q24.1 0.640884578 Diagnosis
53 R24D D4987 chr19:247,232-4,772,202 LOH 4524971 p13.3 0.048328768 Diagnosis
54 R24D D4987 chrY:2,660,163-28,799,935 Homozygous Copy Loss 26139773 p11.31 - q11.23 -1.344213426 Diagnosis
55 R26R1 D3605 chr1:144,790,037-193,932,788 CN Gain 49142752 q21.1 - q31.3 0.413012281 Relapse
56 R26R1 D3605 chr2:134,242,471-139,641,542 CN Gain 5399072 q21.2 - q22.1 0.099892825 Relapse
57 R26R1 D3605 chr2:212,437,072-215,227,024 CN Gain 2789953 q34 0.157719932 Relapse
58 R26R1 D3605 chr3:63,411-60,777,554 LOH 60714144 p26.3 - p14.2 0.031273108 Relapse
59 R26R1 D3605 chr3:116,120,738-117,045,461 CN Loss 924724 q13.31 -0.334444731 Relapse
60 R26R1 D3605 chr4:181,713,895-190,915,650 CN Loss 9201756 q34.3 - q35.2 -0.102216519 Relapse
61 R26R1 D3605 chr5:38,139-1,985,845 CN Gain 1947707 p15.33 0.196880452 Relapse
62 R26R1 D3605 chr6:85,053,988-92,677,362 CN Gain 7623375 q14.3 - q15 0.121158428 Relapse
63 R26R1 D3605 chr7:88,362,639-94,444,750 CN Gain 6082112 q21.13 - q21.3 0.167499274 Relapse
64 R26R1 D3605 chr8:128,651,315-128,766,080 CN Gain 114766 q24.21 0.318408996 Relapse
65 R26R1 D3605 chr8:128,767,004-128,840,276 CN Loss 73273 q24.21 -0.170757502 Relapse
66 R26R1 D3605 chr11:19,973,768-27,645,530 LOH 7671763 p15.1 - p14.1 -0.017129924 Relapse
67 R26R1 D3605 chr13:64,574,475-69,315,335 CN Gain 4740861 q21.31 - q21.33 0.193698779 Relapse
68 R26R1 D3605 chr17:400,959-19,497,890 LOH 19096932 p13.3 - p11.2 -0.032206982 Relapse
69 R26R1 D3605 chr19:247,232-3,093,163 CN Gain 2845932 p13.3 0.274351418 Relapse
70 R26R1 D3605 chr22:42,109,917-51,213,826 CN Loss 9103910 q13.2 - q13.33 -0.404972315 Relapse
71 R27R D3550 chr3:52,091,254-52,387,078 CN Gain 295825 p21.2 - p21.1 0.451920211 Relapse
72 R27R D3550 chr3:53,096,047-71,128,028 CN Loss 18031982 p21.1 - p13 -0.740445018 Relapse
73 R27R D3550 chr3:173,294,318-176,793,337 CN Loss 3499020 q26.31 - q26.32 -0.79662776 Relapse
74 R27R D3550 chr6:170,043,646-170,913,051 CN Loss 869406 q27 -0.227305084 Relapse
75 R27R D3550 chr7:27,127,231-27,288,041 CN Loss 160811 p15.2 -0.66324991 Relapse
76 R27R D3550 chr10:89,605,873-135,434,303 LOH 45828431 q23.31 - q26.3 -0.030198406 Relapse
77 R27R D3550 chr17:400,959-16,776,755 LOH 16375797 p13.3 - p11.2 -0.112308335 Relapse
78 R29D D3002 chr1:31,011,165-32,110,813 CN Loss 1099649 p35.2 -0.688853204 Diagnosis
79 R29D D3002 chr2:30,896,152-53,148,411 CN Loss 22252260 p23.1 - p16.2 -0.534387171 Diagnosis
80 R29D D3002 chr2:53,170,717-61,750,015 CN Gain 8579299 p16.2 - p15 0.293943018 Diagnosis
81 R29D D3002 chr4:1-191,154,276 CN Loss 191154276 p16.3 - q35.2 -0.549573988 Diagnosis
82 R29D D3002 chr9:77,198,281-106,699,071 CN Loss 29500791 q21.13 - q31.1 -0.661198556 Diagnosis
83 R29D D3002 chr17:400,959-22,217,883 LOH 21816925 p13.3 - p11.1 -0.098488841 Diagnosis
84 R29D D3002 chrY:2,660,163-28,799,935 Homozygous Copy Loss 26139773 p11.31 - q11.23 -2.904631257 Diagnosis
85 R29R D3003 chr1:31,011,165-32,110,813 CN Loss 1099649 p35.2 -0.766182899 Relapse
86 R29R D3003 chr2:30,896,152-53,092,820 CN Loss 22196669 p23.1 - p16.2 -0.6874144077301025 Relapse
87 R29R D3003 chr2:53,092,821-65,698,084 CN Gain 12605264 p16.2 - p14 0.133606017 Relapse
88 R29R D3003 chr2:111,749,277-112,766,267 CN Loss 1016991 q13 -0.798712969 Relapse
89 R29R D3003 chr3:63,411-87,287,120 CN Loss 87223710 p26.3 - p11.2 -0.6943492 Relapse
90 R29R D3003 chr3:116,138,039-116,857,434 Homozygous Copy Loss 719396 q13.31 -1.832753003 Relapse
91 R29R D3003 chr3:175,628,862-180,572,731 CN Loss 4943870 q26.31 - q26.33 -0.721342206 Relapse
92 R29R D3003 chr4:1-191,154,276 CN Loss 191154276 p16.3 - q35.2 -0.700191081 Relapse
93 R29R D3003 chr6:1-171,115,067 CN Loss 171115067 p25.3 - q27 -0.408267021 Relapse
94 R29R D3003 chr9:77,198,281-106,699,071 CN Loss 29500791 q21.13 - q31.1 -0.7789384126663208 Relapse
95 R29R D3003 chr10:35,678,082-135,434,303 CN Loss 99756222 p11.21 - q26.3 -0.661034048 Relapse
96 R29R D3003 chr11:59,547,323-60,380,272 CN Loss 832950 q12.1 - q12.2 -0.561492264 Relapse
97 R29R D3003 chr11:85,659,261-101,880,373 CN Loss 16221113 q14.2 - q22.1 -0.721561998 Relapse
98 R29R D3003 chr11:117,887,757-121,416,828 CN Loss 3529072 q23.3 - q24.1 -0.641128659 Relapse
99 R29R D3003 chr11:124,078,360-126,481,440 CN Loss 2403081 q24.2 -0.726306915 Relapse
100 R29R D3003 chr11:127,799,447-131,459,900 CN Loss 3660454 q24.2 - q25 -0.629294932 Relapse