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b/SCHEMA.md |
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**metadata** |
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Here is a list of each metadata field, with explanations where relevant |
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| Attribute | Description | |
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|------|-----| |
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| patientid | Internal identifier | |
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| offset | Number of days since the start of symptoms or hospitalization for each image. If a report indicates "after a few days", then 5 days is assumed. This is very important to have when there are multiple images for the same patient to track progression. | |
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| sex | Male (M), Female (F), or blank | |
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| age | Age of the patient in years | |
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| finding | Type of pneumonia | |
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| RT_PCR_positive | Yes (Y) or no (N) or blank if not reported/taken | |
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| survival | Yes (Y) or no (N) or blank if unknown| |
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| intubated | Yes (Y) if the patient was intubated (or ventilated) at any point during this illness or No (N) or blank if unknown. | |
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| went_icu | Yes (Y) if the patient was in the ICU (intensive care unit) or CCU (critical care unit) at any point during this illness or No (N) or blank if unknown.| |
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| needed_supplemental_O2 | Yes (Y) if the patient required supplemental oxygen at any point during this illness or No (N) or blank if unknown | |
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| extubated | Yes (Y) if the patient was successfully extubated or No (N) or blank if unknown | |
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| temperature | Temperature of the patient in Celsius at the time of the image| |
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| pO2 saturation | partial pressure of oxygen saturation in % at the time of the image | |
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| wbc count | white blood cell count in units of 10^3/uL at the time of the image | |
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| neutrophil count | neutrophil cell count in units of 10^3/uL at the time of the image | |
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| lymphocyte count | lymphocyte cell count in units of 10^3/uL at the time of the image | |
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| view | Posteroanterior (PA), Anteroposterior (AP), AP Supine (APS), or Lateral (L) for X-rays; Axial or Coronal for CT scans. Translations: Bettaufnahme->Supine, Liegend->Supine| |
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| modality | CT, X-ray, or something else | |
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| date | Date on which the image was acquired | |
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| location | Hospital name, city, state, country | |
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| filename | Name with extension | |
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| doi | Digital object identifier ([DOI](https://en.wikipedia.org/wiki/Digital_object_identifier)) of the research article | |
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| url | URL of the paper or website where the image came from | |
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| license | License of the image such as CC BY-NC-SA. Blank if unknown | |
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| clinical notes | Clinical notes about the image and/or the patient | |
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| other notes | e.g. credit | |
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Within the finding field, the following mappings have been used to simplify the findings in the source: |
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| Original Finding | Simplified Finding | |
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| ------------------ | ------------------- | |
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| Tuberculous spondylodiscitis | Spinal Tuberculosis | |
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| No Finding | No Finding | |
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| COVID-19 | COVID-19 | |
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| Swine-Origin Influenza A (H1N1) Viral Pneumonia | Swine-Origin Influenza A (H1N1) Viral Pneumonia | |
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| Complicated Legionnaires' disease. | Legionella | |
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| No Finding | No Finding | |
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| Disseminated "miliary" tuberculosis during biologic (adalimumab) treatment for Crohn's disease | Tuberculosis | |
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| Invasive Aspergillosis and Aspergilloma causing Pneumopericardium. | Invasive Aspergillosis | |
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| Herpes pneumonia and ARDS | "Herpes pneumonia" or "Herpes pneumonia, ARDS" based on sequence |
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| Acute Respiratory Distress Syndrome: a Sequela of Asphyxiation Injury | ARDS | |
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| ARDS secondary to fat embolism | ARDS | |
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| Accelerated Phase Usual Interstitial Pneumonia | Accelerated Phase Usual Interstitial Pneumonia | |
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| Cystic form of pneumocystis jirovecii pneumonia. | Pneumocystis | |
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| Round pneumonia | Round pneumonia | |
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| Pneumocytis jiroveci pneumonia | Pneumocystis | |
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| Lymphocytic interstitial pneumonia | Lymphocytic interstitial pneumonia | |
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| Idiopathic cryptogenic organizing pneumonia (COP) | Cryptogenic Organizing Pneumonia | |
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| Streptococcus pneumonia and multiple pulmonary emboli | Streptococcus | |
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| Fire-eater's pneumonia. | Lipoid | |
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| Allergic bronchopulmonary aspergillosis | Allergic bronchopulmonary aspergillosis | |
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| Cryptogenic organising pneumonia | Cryptogenic organising pneumonia | |
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| Chronic eosinophilic pneumonia | Chronic eosinophilic pneumonia | |
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| Aspiration pneumonia | Aspiration pneumonia | |
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| Pneumocystis Jirovecci Infection in an HIV patient. | Pneumocystis | |
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| Endobronchial tuberculosis (EBTB). | Tuberculosis | |
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| Endobronchial spread of tuberculosis. | Tuberculosis | |
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| Hydropneumothorax as the initial manifestation of postprimary tuberculosis. | Tuberculosis | |
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| Pulmonary nocardia infection in HIV | Nocardia | |
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| Empyema necessitans as manifestation of tuberculosis | Tuberculosis | |
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| MERS-CoV | MERS | |
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| Tuberculosis with consolidation | Tuberculosis | |
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| Klebsiella pneumonia | Klebsiella | |
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| Acute eosinophilic pneumonia | Eosinophilic pneumonia | |
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| Miliary tuberculosis | Tuberculosis | |
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| Bilateral pulmonary nodules - tuberculous granulomas | Tuberculosis | |
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| Pneumonia in transplant lungs (description mentions Mycoplasma) | Mycoplasma Bacterial Pneumonia | |
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| Tuberculosis - left upper lobe | Tuberculosis | |
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| Cavitating pneumonia - lingular segments | Pneumonia | |
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| Community acquired methicillin resistant staphylococcus aureus pneumonia | MRSA | |
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| Streptococcus | Pneumococcal pneumonia | |
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| Klebsiella pneumonia causing a bulging fissure | Klebsiella | |
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| Tree-in-bud caused by haemophilus influenzae | Influenza | |
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| Right middle lobe pneumonia | Pneumonia | |
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| Left lower lobe pneumonia | Pneumonia | |
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| Silhouette sign of Felson: right middle lobe pneumonia | Pneumonia | |
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| Left lower lobe pneumonia | Pneumonia | |
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When the view field is provided in the text/image, but is not explicit, the following mappings have been used: |
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| Original view | Simplified view | |
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| ------------- | --------------- | |
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| (AP) (Mobile) Sitting | AP | |
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| (AP) Seduto | AP | |
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| (AP) Seduto a letto | AP | |
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| (AP) (Mobile) AP Semi-Erect | AP | |
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| (AP) (Mobile) Semi-Erect | AP | |
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| (AP) Semiseduto | AP | |
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| (AP) (Mobile) Supine | AP Supine | |
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| (AP) Supino | AP Supine | |
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| SUP | AP Supine | |
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| Semi-Supine | AP Supine | |