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<table><tbody><tr><td><table cellpadding="2" cellspacing="0" width="600"><tbody><tr bgcolor="#cccccc" valign="top"><td colspan="2"><table width="600"><tbody><tr><td><strong class="acc" id="GSE272833"><a href="/geo/query/acc.cgi?acc=GSE272833" onmouseout="onLinkOut('HelpMessage' , geo_empty_help)" onmouseover="onLinkOver('HelpMessage' , geoaxema_recenter)">Series GSE272833</a></strong></td> |
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<td></td> |
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<td align="right" onmouseout="onLinkOut('HelpMessage' , geo_empty_help)" onmouseover="onLinkOver('HelpMessage' , geoaxema_gds)"><a href="/gds/?term=GSE272833[Accession]">Query DataSets for GSE272833</a></td> |
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</tr></tbody></table></td></tr> |
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<tr valign="top"><td>Status</td> |
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<td>Public on Mar 21, 2025</td> |
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<tr valign="top"><td nowrap="">Title</td> |
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<td style="text-align: justify">Spatial transcriptome analysis for squamous cell carcinoma arising from mature teratoma</td> |
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</tr> |
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<tr valign="top"><td nowrap="">Organism</td> |
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<td><a href="/Taxonomy/Browser/wwwtax.cgi?mode=Info&id=9606" onmouseout="onLinkOut('HelpMessage' , geo_empty_help)" onmouseover="onLinkOver('HelpMessage' , geoaxema_organismus)">Homo sapiens</a></td> |
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<tr valign="top"><td nowrap="">Experiment type</td> |
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<td>Other<br></td> |
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<tr valign="top"><td nowrap="">Summary</td> |
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<td style="text-align: justify">Squamous cell carcinoma arising from mature teratoma (SCC-MT) is one of the rare ovarian malignancies. Therefore, the molecular background of SCC-MT remains largely unelucidated. In this study, we performed the spatial transcriptomics for SCC-MT.<br></td> |
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<tr valign="top"><td nowrap=""> </td> |
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<td></td> |
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<tr valign="top"><td nowrap="">Overall design</td> |
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<td style="text-align: justify">Archival fresh-frozen samples of SCC-MT were obtained from the National Cancer Center Biobank and Nagoya University. We prepared four slices from three patients with SCC-MT. Spatial transcriptomics was performed using the Visium Spatial Gene Expression Reagent Kits (10x Genomics) according to the manufacturer’s instructions.<br></td> |
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<tr valign="top"><td nowrap=""> </td> |
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<td></td> |
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<tr valign="top"><td>Contributor(s)</td> |
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<td><a href="/pubmed/?term=Yoshida K[Author]">Yoshida K</a>, <a href="/pubmed/?term=Yokoi A[Author]">Yokoi A</a>, <a href="/pubmed/?term=Yamamoto Y[Author]">Yamamoto Y</a></td> |
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</tr> |
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<tr valign="top"><td nowrap="">Citation(s)</td> |
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<td><span class="pubmed_id" id="39948701"><!--?xml version="1.0" encoding="UTF-8"?--> |
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<div class="PubmedCitation"><ul><li><span class="authors">Yoshida K, Yokoi A, Suzuki H, Tamauchi S et al. </span><span class="title">Single-Nucleus RNA Sequencing and Spatial Transcriptomics for Squamous Cell Carcinoma Arising From Ovarian Mature Teratoma. </span><span class="source">Cancer Sci</span> 2025 Feb 13. PMID: <a title="Link to PubMed record" href="https://www.ncbi.nlm.nih.gov/pubmed/39948701">39948701</a></li></ul></div> |
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</span></td> |
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</tr> |
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<tr valign="top"><td colspan="2"><span id="geo2r"></span> <span id="rnaseq_counts"></span></td></tr> |
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<tr bgcolor="#eeeeee" valign="top"><td>Submission date</td> |
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<td>Jul 23, 2024</td> |
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</tr> |
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<tr bgcolor="#eeeeee" valign="top"><td>Last update date</td> |
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<td>Mar 22, 2025</td> |
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</tr> |
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<tr bgcolor="#eeeeee" valign="top"><td>Contact name</td> |
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<td>Kosuke Yoshida</td> |
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<tr bgcolor="#eeeeee" valign="top"><td nowrap="">E-mail(s)</td> |
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<td><a href="mailto:yoshida.kosuke.n7@f.mail.nagoya-u.ac.jp">yoshida.kosuke.n7@f.mail.nagoya-u.ac.jp</a><br></td> |
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</tr> |
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<tr bgcolor="#eeeeee" valign="top"><td nowrap="">Organization name</td> |
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<td style="text-align: justify">Nagoya University<br></td> |
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</tr> |
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<tr bgcolor="#eeeeee" valign="top"><td nowrap="">Street address</td> |
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<td style="text-align: justify">65 Tsuruma-cho<br></td> |
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</tr> |
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<tr bgcolor="#eeeeee" valign="top"><td nowrap="">City</td> |
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<td style="text-align: justify">Nagoya</td> |
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</tr> |
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<tr bgcolor="#eeeeee" valign="top"><td nowrap="">State/province</td> |
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<td style="text-align: justify">Aichi</td> |
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</tr> |
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<tr bgcolor="#eeeeee" valign="top"><td nowrap="">ZIP/Postal code</td> |
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<td style="text-align: justify">466-8550</td> |
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</tr> |
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<tr bgcolor="#eeeeee" valign="top"><td nowrap="">Country</td> |
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<td style="text-align: justify">Japan</td> |
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</tr> |
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<tr valign="top"><td nowrap=""> </td> |
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<td></td> |
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</tr> |
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<tr valign="top"><td>Platforms (1)</td> |
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<td onmouseout="onLinkOut('HelpMessage' , geo_empty_help)" onmouseover="onLinkOver('HelpMessage' , geoaxema_recenter)"><table cellpadding="3" style="position:relative;top:-5px;left:-5px"><tbody><tr><td valign="top"><a href="/geo/query/acc.cgi?acc=GPL28038" onmouseout="onLinkOut('HelpMessage' , geo_empty_help)" onmouseover="onLinkOver('HelpMessage' , geoaxema_recenter)">GPL28038</a></td> |
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<td valign="top">DNBSEQ-G400 (Homo sapiens)</td> |
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</tr></tbody></table></td> |
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</tr> |
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</tbody></table> |